AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548280 MtrunA17_Chr4g0031181 100.000 166 0 0 1 166 1 166 1.64e-124 347
Msa0548280 MtrunA17_Chr2g0328001 93.373 166 11 0 1 166 1 166 2.68e-107 303
Msa0548280 MtrunA17_Chr8g0362321 38.272 162 86 2 1 162 1 148 9.27e-38 126
Msa0548280 MtrunA17_Chr4g0060351 38.272 162 86 2 1 162 1 148 3.34e-37 125
Msa0548280 MtrunA17_Chr7g0275361 37.838 148 78 2 5 152 2 135 4.41e-33 114
Msa0548280 MtrunA17_Chr3g0108261 37.162 148 79 2 5 152 2 135 1.78e-31 110
Msa0548280 MtrunA17_Chr5g0432831 37.162 148 79 2 5 152 2 135 2.29e-31 110
Msa0548280 MtrunA17_Chr1g0154011 36.486 148 80 2 5 152 2 135 8.13e-31 108
Msa0548280 MtrunA17_Chr4g0037011 37.415 147 78 2 5 151 2 134 9.56e-31 108
Msa0548280 MtrunA17_Chr8g0369311 35.135 148 82 2 5 152 58 191 3.02e-29 106
Msa0548280 MtrunA17_Chr4g0038891 36.184 152 82 3 9 160 37 173 5.26e-28 102
Msa0548280 MtrunA17_Chr5g0396451 36.184 152 82 3 9 160 37 173 4.44e-27 100
Msa0548280 MtrunA17_Chr2g0316211 33.571 140 79 2 11 150 12 137 3.95e-25 94.7
Msa0548280 MtrunA17_Chr1g0199951 35.484 155 86 2 3 157 40 180 9.14e-25 94.7
Msa0548280 MtrunA17_Chr2g0316201 32.857 140 80 2 11 150 12 137 1.05e-24 93.6
Msa0548280 MtrunA17_Chr3g0139901 32.192 146 82 4 2 145 3 133 9.37e-23 88.6
Msa0548280 MtrunA17_Chr5g0401831 30.952 168 95 4 1 161 1 154 1.74e-21 85.5
Msa0548280 MtrunA17_Chr4g0053191 31.447 159 94 2 1 155 1 148 1.90e-21 85.1
Msa0548280 MtrunA17_Chr8g0378601 30.822 146 87 2 3 148 21 152 2.36e-19 80.1
Msa0548280 MtrunA17_Chr3g0131871 27.586 145 89 4 9 151 7 137 3.21e-19 80.1
Msa0548280 MtrunA17_Chr5g0403591 30.833 120 70 1 40 159 63 169 8.65e-16 71.2
Msa0548280 MtrunA17_Chr7g0254701 26.897 145 92 2 9 153 15 145 1.28e-14 69.3
Msa0548280 MtrunA17_Chr8g0372391 32.500 120 65 3 1 119 12 116 5.80e-14 65.9
Msa0548280 MtrunA17_Chr5g0404931 33.929 112 58 3 9 119 20 116 3.38e-13 63.9
Msa0548280 MtrunA17_Chr4g0068301 27.108 166 93 6 1 162 7 148 4.25e-12 62.8
Msa0548280 MtrunA17_Chr4g0059291 25.735 136 85 4 32 164 27 149 5.38e-12 60.8
Msa0548280 MtrunA17_Chr8g0345331 30.303 132 70 6 1 127 1 115 1.44e-11 60.8
Msa0548280 MtrunA17_Chr8g0348701 23.377 154 102 4 10 161 6 145 4.44e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548280 AT5G59300.1 89.759 166 17 0 1 166 1 166 7.41e-105 297
Msa0548280 AT3G46460.1 88.554 166 19 0 1 166 1 166 1.69e-101 289
Msa0548280 AT3G55380.1 87.805 164 20 0 3 166 4 167 1.14e-100 286
Msa0548280 AT3G55380.2 71.717 198 22 1 3 166 4 201 2.17e-92 267
Msa0548280 AT3G46460.3 88.034 117 14 0 50 166 8 124 2.70e-75 221
Msa0548280 AT3G46460.2 88.034 117 14 0 50 166 8 124 2.70e-75 221
Msa0548280 AT2G02760.1 37.654 162 87 2 1 162 1 148 1.27e-36 124
Msa0548280 AT2G02760.2 37.654 162 87 2 1 162 1 148 1.27e-36 124
Msa0548280 AT2G02760.4 37.654 162 87 2 1 162 1 148 1.27e-36 124
Msa0548280 AT2G02760.3 37.654 162 87 2 1 162 1 148 1.27e-36 124
Msa0548280 AT1G14400.1 37.654 162 87 2 1 162 1 148 1.41e-36 124
Msa0548280 AT1G14400.2 37.654 162 87 2 1 162 1 148 1.41e-36 124
Msa0548280 AT5G62540.1 37.654 162 87 2 1 162 1 148 3.22e-36 123
Msa0548280 AT3G08690.2 35.669 157 87 2 5 161 2 144 2.63e-32 113
Msa0548280 AT3G08690.1 35.669 157 87 2 5 161 2 144 2.63e-32 113
Msa0548280 AT1G64230.2 37.838 148 78 2 5 152 2 135 1.14e-31 111
Msa0548280 AT1G64230.1 37.838 148 78 2 5 152 2 135 1.14e-31 111
Msa0548280 AT4G27960.1 36.486 148 80 2 5 152 2 135 2.60e-31 110
Msa0548280 AT5G41700.5 36.486 148 80 2 5 152 2 135 6.25e-31 109
Msa0548280 AT5G41700.2 36.486 148 80 2 5 152 2 135 6.25e-31 109
Msa0548280 AT5G41700.1 36.486 148 80 2 5 152 2 135 6.25e-31 109
Msa0548280 AT5G53300.2 35.811 148 81 2 5 152 2 135 1.25e-30 108
Msa0548280 AT5G53300.4 35.811 148 81 2 5 152 2 135 1.25e-30 108
Msa0548280 AT5G53300.1 35.811 148 81 2 5 152 2 135 1.25e-30 108
Msa0548280 AT3G08700.2 32.484 157 93 1 5 161 2 145 1.29e-30 108
Msa0548280 AT3G08700.1 32.484 157 93 1 5 161 2 145 1.29e-30 108
Msa0548280 AT4G27960.2 34.161 161 92 2 1 161 28 174 2.18e-30 108
Msa0548280 AT5G56150.1 32.484 157 92 2 5 161 2 144 7.83e-29 104
Msa0548280 AT5G41700.4 35.570 149 81 3 5 152 2 136 1.03e-28 103
Msa0548280 AT1G64230.3 34.615 156 81 3 5 152 2 144 2.02e-28 103
Msa0548280 AT1G50490.1 37.405 131 68 2 30 160 60 176 2.02e-26 99.0
Msa0548280 AT2G16740.1 31.973 147 86 2 5 151 2 134 5.02e-26 97.1
Msa0548280 AT3G20060.1 35.526 152 83 3 9 160 41 177 9.96e-26 97.4
Msa0548280 AT1G64230.5 35.294 119 64 1 33 151 71 176 1.77e-25 97.1
Msa0548280 AT1G64230.4 35.294 119 64 1 33 151 71 176 1.77e-25 97.1
Msa0548280 AT3G20060.2 35.878 131 70 2 30 160 16 132 6.29e-25 94.0
Msa0548280 AT1G16890.2 32.857 140 80 2 11 150 12 137 1.41e-24 93.6
Msa0548280 AT1G78870.2 32.857 140 80 2 11 150 12 137 1.57e-24 93.6
Msa0548280 AT1G36340.2 36.364 132 70 2 24 155 27 144 8.90e-24 91.7
Msa0548280 AT1G36340.1 36.364 132 70 2 24 155 27 144 8.90e-24 91.7
Msa0548280 AT5G25760.1 33.562 146 80 4 2 145 3 133 1.79e-23 90.9
Msa0548280 AT5G25760.2 33.562 146 80 4 2 145 3 133 1.79e-23 90.9
Msa0548280 AT1G16890.3 33.333 132 74 2 19 150 29 146 9.13e-23 89.0
Msa0548280 AT5G41700.3 36.752 117 60 2 5 121 2 104 3.74e-22 87.0
Msa0548280 AT3G57870.1 33.775 151 85 2 9 155 10 149 6.52e-22 86.7
Msa0548280 AT1G16890.1 33.333 114 63 1 37 150 4 104 1.34e-21 84.7
Msa0548280 AT1G78870.4 33.333 114 63 1 37 150 4 104 1.35e-21 84.7
Msa0548280 AT5G53300.3 36.522 115 59 2 5 119 2 102 1.73e-21 84.3
Msa0548280 AT5G56150.2 33.621 116 63 2 5 120 2 103 7.65e-21 82.8
Msa0548280 AT3G24515.1 31.548 168 98 3 2 161 4 162 1.20e-20 87.8
Msa0548280 AT1G78870.1 33.043 115 63 2 37 150 4 105 7.69e-20 80.5
Msa0548280 AT3G13550.1 32.215 149 84 3 9 154 41 175 4.07e-19 80.1
Msa0548280 AT5G50870.1 28.472 144 89 2 9 151 7 137 9.48e-19 79.3
Msa0548280 AT3G24515.3 31.783 129 79 2 33 161 68 187 6.47e-18 80.1
Msa0548280 AT5G50870.2 28.889 135 82 2 9 142 7 128 2.07e-17 76.3
Msa0548280 AT5G05080.2 28.966 145 89 2 9 153 15 145 2.38e-17 77.0
Msa0548280 AT5G05080.3 28.966 145 89 2 9 153 15 145 2.38e-17 77.0
Msa0548280 AT5G05080.1 28.966 145 89 2 9 153 15 145 2.38e-17 77.0
Msa0548280 AT5G05080.4 28.966 145 89 2 9 153 15 145 2.38e-17 77.0
Msa0548280 AT1G78870.3 30.435 115 66 2 11 125 12 112 6.53e-17 72.4
Msa0548280 AT2G18600.1 30.075 133 79 2 31 163 57 175 2.97e-16 72.8
Msa0548280 AT2G18600.2 30.075 133 79 2 31 163 57 175 2.97e-16 72.8
Msa0548280 AT3G13550.2 32.787 122 68 2 9 130 41 148 5.94e-16 71.6
Msa0548280 AT4G36800.2 30.508 118 69 1 42 159 66 170 1.58e-15 70.9
Msa0548280 AT4G36800.1 30.508 118 69 1 42 159 66 170 1.58e-15 70.9
Msa0548280 AT1G45050.1 32.743 113 60 3 9 120 20 117 4.49e-14 66.2
Msa0548280 AT1G75440.1 32.500 120 65 3 1 119 12 116 7.29e-14 65.9
Msa0548280 AT5G42990.1 33.036 112 59 3 9 119 20 116 1.09e-13 65.5
Msa0548280 AT2G46030.4 29.921 127 74 3 37 161 35 148 2.05e-13 65.1
Msa0548280 AT2G46030.2 29.921 127 74 3 37 161 35 148 2.05e-13 65.1
Msa0548280 AT1G63800.1 25.325 154 99 4 10 161 6 145 2.40e-13 65.1
Msa0548280 AT2G46030.5 29.921 127 74 3 37 161 32 145 2.42e-13 65.1
Msa0548280 AT2G46030.1 29.921 127 74 3 37 161 32 145 2.42e-13 65.1
Msa0548280 AT3G17000.1 31.746 126 64 6 11 131 18 126 3.78e-13 66.2
Msa0548280 AT1G63800.2 28.125 128 77 3 36 161 16 130 4.77e-13 63.9
Msa0548280 AT5G41340.1 28.125 128 77 3 36 161 31 145 7.87e-13 63.5
Msa0548280 AT2G46030.3 29.921 127 74 3 37 161 104 217 7.88e-13 64.7
Msa0548280 AT1G17280.4 31.429 140 81 6 1 137 1 128 1.04e-12 64.3
Msa0548280 AT1G45050.2 36.471 85 51 2 9 92 20 102 1.60e-12 61.2
Msa0548280 AT5G50430.1 31.818 132 68 6 1 127 1 115 3.15e-12 62.8
Msa0548280 AT5G50430.2 31.818 132 68 6 1 127 1 115 3.15e-12 62.8
Msa0548280 AT1G17280.9 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.7 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.6 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.2 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.5 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.3 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.1 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT1G17280.8 31.818 132 68 6 1 127 1 115 3.92e-12 62.4
Msa0548280 AT2G32790.1 32.231 121 69 1 33 153 58 165 1.71e-11 60.1
Msa0548280 AT4G36410.1 32.967 91 58 2 5 94 16 104 6.05e-11 58.2

Find 78 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCCTTGTTTAATATTT+TGG 0.034153 4_1:-42071953 None:intergenic
TTCACTGTTGGTGGACTATT+TGG 0.104211 4_1:+42074237 None:intergenic
TAAATTTGATGAGTTTAATT+AGG 0.240860 4_1:-42072119 Msa0548280:three_prime_UTR
CTTTGTGTTGTTGTGGGTTT+GGG 0.259416 4_1:+42075472 None:intergenic
GAATGGAGTGTCACCGTAAT+TGG 0.275234 4_1:-42075131 Msa0548280:CDS
AGGGCTTACTAGAGAGTATC+AGG 0.280516 4_1:+42075104 None:intergenic
ACAATTCTCTCTTCTCTTGA+TGG 0.299779 4_1:-42075357 Msa0548280:exon
TGGTGGACTATTTGGGTAAT+TGG 0.314693 4_1:+42074245 None:intergenic
CAGTTCCATATGCTAGGAAT+TGG 0.323967 4_1:-42072227 Msa0548280:three_prime_UTR
TTTGCAGGGGATTCATCATT+AGG 0.324994 4_1:+42073351 None:intergenic
TACAACTTATCTTAATGAAT+TGG 0.328175 4_1:-42072322 Msa0548280:three_prime_UTR
ACTGCTGCTTCAACATTTGC+AGG 0.332046 4_1:+42073336 None:intergenic
TGTTTCCAATTCCTAGCATA+TGG 0.336347 4_1:+42072222 None:intergenic
TCTTTGTGTTGTTGTGGGTT+TGG 0.357881 4_1:+42075471 None:intergenic
CACATCGGCCAACCTTCTTC+CGG 0.362631 4_1:+42072411 None:intergenic
TGAAATTTACTTCAGAGATA+TGG 0.378327 4_1:-42074218 Msa0548280:CDS
CTCGATTCTTTGTGTTGTTG+TGG 0.382663 4_1:+42075465 None:intergenic
AAAGAAAGAGAGAGAGTCAC+AGG 0.396711 4_1:-42075436 Msa0548280:five_prime_UTR
TCGATTCTTTGTGTTGTTGT+GGG 0.398776 4_1:+42075466 None:intergenic
GAGATAATAGAGATGAATTC+CGG 0.406903 4_1:-42072430 Msa0548280:CDS
AGATAAGTTGTATGTTCCTC+TGG 0.411546 4_1:+42072333 None:intergenic
TCACTGTTGGTGGACTATTT+GGG 0.414224 4_1:+42074238 None:intergenic
AAACTGTATTCTAAGTGCTT+TGG 0.415430 4_1:-42072198 Msa0548280:three_prime_UTR
TTGTGTGGTTATGCTCTGAT+TGG 0.423527 4_1:-42072050 Msa0548280:three_prime_UTR
CTTGCTAGCTCATAACCATT+AGG 0.424851 4_1:+42074057 None:intergenic
ATCCTGATTCCTAAGAAAAC+AGG 0.430563 4_1:+42071987 None:intergenic
GTTTAATTAGGTGCTTTGTT+TGG 0.433274 4_1:-42072107 Msa0548280:three_prime_UTR
CTTTGGCTGGTGGTTTGACA+TGG 0.436670 4_1:-42072181 Msa0548280:three_prime_UTR
GAAGTAAATTTCACTGTTGG+TGG 0.454688 4_1:+42074228 None:intergenic
CCTCCTGGTGACGATCCTAA+TGG 0.463112 4_1:-42074072 Msa0548280:CDS
AGAAGGTTGGCCGATGTGTA+AGG 0.477304 4_1:-42072406 Msa0548280:CDS
GTATCACTTACGGTATGAAC+AGG 0.488328 4_1:+42074021 None:intergenic
TCAGAGATATGGCATCCTAA+TGG 0.497837 4_1:-42074207 Msa0548280:intron
GTGGTTATGCTCTGATTGGT+TGG 0.499627 4_1:-42072046 Msa0548280:three_prime_UTR
CCAGCAGAAAATCCATCGAC+AGG 0.503148 4_1:+42075179 None:intergenic
TCTGAAGTAAATTTCACTGT+TGG 0.508094 4_1:+42074225 None:intergenic
ACAAAAGCACCGTGATGTGC+AGG 0.508969 4_1:+42072359 None:intergenic
TTGCAGTATACACTGATGGC+CGG 0.509793 4_1:-42074116 Msa0548280:intron
TGGATTTCTTACAGTGAGGG+AGG 0.519668 4_1:-42074297 Msa0548280:intron
TGCAGTATACACTGATGGCC+GGG 0.523686 4_1:-42074115 Msa0548280:intron
ATTCTAAGTGCTTTGGCTGG+TGG 0.524674 4_1:-42072191 Msa0548280:three_prime_UTR
CTGCTGCTTCAACATTTGCA+GGG 0.527019 4_1:+42073337 None:intergenic
TATAGAGAAAGAAAGATGGT+TGG 0.529221 4_1:+42075409 None:intergenic
TTTCTTCAGTTCCATATGCT+AGG 0.529505 4_1:-42072233 Msa0548280:three_prime_UTR
GGACTATTTGGGTAATTGGA+AGG 0.531635 4_1:+42074249 None:intergenic
ATGAGCTAGCAAGTGAGCGC+TGG 0.535537 4_1:-42074047 Msa0548280:CDS
ATATCAATCCTCCATCCTCC+TGG 0.538346 4_1:-42074087 Msa0548280:CDS
TAAATAATCAATCCAACTGT+CGG 0.539899 4_1:-42075388 Msa0548280:five_prime_UTR
TAGAGATGAATTCCGGAAGA+AGG 0.545308 4_1:-42072423 Msa0548280:CDS
TAATTTGCAGTATACACTGA+TGG 0.547446 4_1:-42074120 Msa0548280:intron
GGATTTCTTACAGTGAGGGA+GGG 0.551958 4_1:-42074296 Msa0548280:intron
GATCTAATTTGCAGAAAATG+TGG 0.556309 4_1:-42072454 Msa0548280:intron
TAGGATCGTCACCAGGAGGA+TGG 0.562353 4_1:+42074076 None:intergenic
TATGGAACTGAAGAAAATAG+AGG 0.565733 4_1:+42072240 None:intergenic
TATTTATAGAGAAAGAAAGA+TGG 0.570265 4_1:+42075405 None:intergenic
AGGGGATTCATCATTAGGAC+TGG 0.572408 4_1:+42073356 None:intergenic
ACTTTCAATTATGCATTGTG+TGG 0.572776 4_1:-42072065 Msa0548280:three_prime_UTR
GATGAATTCCGGAAGAAGGT+TGG 0.582006 4_1:-42072419 Msa0548280:CDS
TGTATTCTAAGTGCTTTGGC+TGG 0.587500 4_1:-42072194 Msa0548280:three_prime_UTR
TTTGGCTGGTGGTTTGACAT+GGG 0.589249 4_1:-42072180 Msa0548280:three_prime_UTR
ATTGGAAGGAAAACTCATGA+TGG 0.595810 4_1:+42074263 None:intergenic
TGCTGCTTCAACATTTGCAG+GGG 0.607745 4_1:+42073338 None:intergenic
TAAACAAGGCAAACAGCGGA+GGG 0.609344 4_1:+42071962 None:intergenic
TTAAACAAGGCAAACAGCGG+AGG 0.615636 4_1:+42071961 None:intergenic
TAACCATTAGGATCGTCACC+AGG 0.638653 4_1:+42074069 None:intergenic
CAGCAGAAAATCCATCGACA+GGG 0.638834 4_1:+42075180 None:intergenic
GGAGGATTGATATGCAAACC+CGG 0.639939 4_1:+42074097 None:intergenic
GGGCTTACTAGAGAGTATCA+GGG 0.641002 4_1:+42075105 None:intergenic
CTTGTGACTTCCTTACACAT+CGG 0.644003 4_1:+42072396 None:intergenic
GGCTTACTAGAGAGTATCAG+GGG 0.652033 4_1:+42075106 None:intergenic
GATCGTCACCAGGAGGATGG+AGG 0.656283 4_1:+42074079 None:intergenic
AAGAAAGAGAGAGAGTCACA+GGG 0.661627 4_1:-42075435 Msa0548280:five_prime_UTR
ATGACCCAAAATATTAAACA+AGG 0.677089 4_1:+42071948 None:intergenic
TTGTGATTGCCTGCACATCA+CGG 0.685257 4_1:-42072368 Msa0548280:exon
ATATTAAACAAGGCAAACAG+CGG 0.704755 4_1:+42071958 None:intergenic
CCATTAGGATCGTCACCAGG+AGG 0.714778 4_1:+42074072 None:intergenic
AAGAAAATAGAGGTGCAGTG+TGG 0.725971 4_1:+42072250 None:intergenic
GCTTACTAGAGAGTATCAGG+GGG 0.769332 4_1:+42075107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAATGTTACTTATTT+TGG - chr4_1:42074884-42074903 Msa0548280:intron 10.0%
!!! AAAATAATGTTACTTATTTT+GGG - chr4_1:42074885-42074904 Msa0548280:intron 10.0%
!! ATCAAATTTAAAAAAAGAAA+AGG + chr4_1:42075317-42075336 None:intergenic 10.0%
!! ATAATCGAAAACAATAAAAA+GGG + chr4_1:42072175-42072194 None:intergenic 15.0%
!! AATAATCGAAAACAATAAAA+AGG + chr4_1:42072176-42072195 None:intergenic 15.0%
!!! ATGAAAACAATATTTTTGAA+TGG - chr4_1:42072298-42072317 Msa0548280:three_prime_UTR 15.0%
!!! AGTTGATTGTTTTTATTAAT+AGG - chr4_1:42072652-42072671 Msa0548280:intron 15.0%
!! TCAAATTAACTAATCTAAAT+AGG - chr4_1:42074852-42074871 Msa0548280:intron 15.0%
!! TAAATTTGATGAGTTTAATT+AGG - chr4_1:42075327-42075346 Msa0548280:CDS 15.0%
!!! TTCATTTTATATTTTGCAAT+AGG - chr4_1:42075424-42075443 Msa0548280:five_prime_UTR 15.0%
!! TATTTATAGAGAAAGAAAGA+TGG + chr4_1:42072044-42072063 None:intergenic 20.0%
!!! TTTGGTTTATAATTCGTTTT+TGG - chr4_1:42072388-42072407 Msa0548280:CDS 20.0%
!! TTGTTTATACTGTTAACTAT+TGG - chr4_1:42072614-42072633 Msa0548280:intron 20.0%
!! TGTTTATACTGTTAACTATT+GGG - chr4_1:42072615-42072634 Msa0548280:intron 20.0%
!! TTATTAATAGGAATCAAACT+CGG - chr4_1:42072664-42072683 Msa0548280:intron 20.0%
!!! TGTTTTGTTTGTTAATTCAT+TGG - chr4_1:42073124-42073143 Msa0548280:intron 20.0%
!!! GTTTTTCTTATTTGTGTTTT+TGG - chr4_1:42073265-42073284 Msa0548280:intron 20.0%
!! TAATGAAAAGTGAATTCTTA+TGG + chr4_1:42073458-42073477 None:intergenic 20.0%
!! GAAGATAAATTATACTAAAC+AGG + chr4_1:42073486-42073505 None:intergenic 20.0%
!!! TAATTTGAACTTTTATCTAC+TGG + chr4_1:42074840-42074859 None:intergenic 20.0%
!!! AGTAACATTATTTTATGTCA+AGG + chr4_1:42074879-42074898 None:intergenic 20.0%
!! TACAACTTATCTTAATGAAT+TGG - chr4_1:42075124-42075143 Msa0548280:CDS 20.0%
! TAAATAATCAATCCAACTGT+CGG - chr4_1:42072058-42072077 Msa0548280:three_prime_UTR 25.0%
! AAAATCCAAACAAGGAATAA+GGG + chr4_1:42072364-42072383 None:intergenic 25.0%
!!! TTATTCCTTGTTTGGATTTT+GGG - chr4_1:42072364-42072383 Msa0548280:three_prime_UTR 25.0%
!! TGTGTTTGATTACTTCTTTT+AGG - chr4_1:42072452-42072471 Msa0548280:intron 25.0%
!!! CTGATCATGATAATTTGTTA+AGG - chr4_1:42072528-42072547 Msa0548280:intron 25.0%
! TATTGACAGTGATAATTGTT+GGG - chr4_1:42072900-42072919 Msa0548280:intron 25.0%
!! CTTAGGCATATTTTATTCTT+AGG - chr4_1:42072960-42072979 Msa0548280:intron 25.0%
!!! AAAACTTTTTTGCAACTAGA+GGG + chr4_1:42073037-42073056 None:intergenic 25.0%
! TGAAATTTACTTCAGAGATA+TGG - chr4_1:42073228-42073247 Msa0548280:intron 25.0%
! AATAAGAAAAACCAACCATT+AGG + chr4_1:42073257-42073276 None:intergenic 25.0%
!!! TGGTTTGATTTTTAATCACA+TGG - chr4_1:42073285-42073304 Msa0548280:intron 25.0%
!!! TGGTTTTATAGTATCACTTA+CGG + chr4_1:42073438-42073457 None:intergenic 25.0%
! ACACTCAATAAAAACTTAGA+AGG + chr4_1:42073513-42073532 None:intergenic 25.0%
! TTTCCTTTGCTTGTATAAAT+GGG - chr4_1:42073602-42073621 Msa0548280:intron 25.0%
! GTGATTAATATCAATACACA+TGG - chr4_1:42073670-42073689 Msa0548280:intron 25.0%
!! TTGTAGTGTTGAAAATTTCA+CGG - chr4_1:42073876-42073895 Msa0548280:intron 25.0%
! AATTATATATGCTATCTTGC+AGG - chr4_1:42074031-42074050 Msa0548280:intron 25.0%
! TTGTATCCTAGTAAACATAA+AGG - chr4_1:42074207-42074226 Msa0548280:intron 25.0%
!!! GGAAGTATTATATAAGCAAA+TGG + chr4_1:42074332-42074351 None:intergenic 25.0%
! TTCACTTCTGATTACAAATT+GGG + chr4_1:42074354-42074373 None:intergenic 25.0%
!! AGTGAACAAAAAGTTCTTTT+AGG - chr4_1:42074368-42074387 Msa0548280:intron 25.0%
! GCAGAAACTAATTATTAATG+TGG + chr4_1:42074445-42074464 None:intergenic 25.0%
! CTAAATCCTAAAATATCCAA+AGG + chr4_1:42074576-42074595 None:intergenic 25.0%
!!! CTTTGGATATTTTAGGATTT+AGG - chr4_1:42074574-42074593 Msa0548280:intron 25.0%
! TTAAGATGTTTATCCAAACA+AGG + chr4_1:42074600-42074619 None:intergenic 25.0%
! CTCATACATAAGAACTAATA+TGG + chr4_1:42074649-42074668 None:intergenic 25.0%
!! CATGTGAATTTTAGATAACA+AGG + chr4_1:42074914-42074933 None:intergenic 25.0%
TATAGAGAAAGAAAGATGGT+TGG + chr4_1:42072040-42072059 None:intergenic 30.0%
CAAAATCCAAACAAGGAATA+AGG + chr4_1:42072365-42072384 None:intergenic 30.0%
!! CTTATTCCTTGTTTGGATTT+TGG - chr4_1:42072363-42072382 Msa0548280:three_prime_UTR 30.0%
ATACTGTTAACTATTGGGAT+TGG - chr4_1:42072620-42072639 Msa0548280:intron 30.0%
!!! TTAACTATTGGGATTGGTTT+TGG - chr4_1:42072626-42072645 Msa0548280:intron 30.0%
! GGTTGAATTTTATTGTCAGT+AGG - chr4_1:42072731-42072750 Msa0548280:intron 30.0%
!!! GTTGGGTTGAGTTTTTTTAT+CGG - chr4_1:42072822-42072841 Msa0548280:intron 30.0%
CTATTGACAGTGATAATTGT+TGG - chr4_1:42072899-42072918 Msa0548280:intron 30.0%
!!! CAAAACTTTTTTGCAACTAG+AGG + chr4_1:42073038-42073057 None:intergenic 30.0%
! CTCTAGTTGCAAAAAAGTTT+TGG - chr4_1:42073036-42073055 Msa0548280:intron 30.0%
! TGTTTGTTAATTCATTGGCT+TGG - chr4_1:42073129-42073148 Msa0548280:intron 30.0%
! TCTGAAGTAAATTTCACTGT+TGG + chr4_1:42073224-42073243 None:intergenic 30.0%
! GATTTTTAATCACATGGAAC+TGG - chr4_1:42073291-42073310 Msa0548280:intron 30.0%
! TAATTTGCAGTATACACTGA+TGG - chr4_1:42073326-42073345 Msa0548280:intron 30.0%
CTTTCCTTTGCTTGTATAAA+TGG - chr4_1:42073601-42073620 Msa0548280:intron 30.0%
TACTACTAATGTTGAAGACT+GGG - chr4_1:42073647-42073666 Msa0548280:intron 30.0%
! CTTTCACGCTACTTATATTT+TGG + chr4_1:42073717-42073736 None:intergenic 30.0%
CAAAATATAAGTAGCGTGAA+AGG - chr4_1:42073715-42073734 Msa0548280:intron 30.0%
ATGAAGAGCTACAAAGTTAA+AGG - chr4_1:42073756-42073775 Msa0548280:intron 30.0%
!! CTTTCCATTAATAGCTTGTT+GGG - chr4_1:42073903-42073922 Msa0548280:intron 30.0%
CAAGTATATGAAATCACAAG+TGG + chr4_1:42073963-42073982 None:intergenic 30.0%
AAGATGCCTTTATGTTTACT+AGG + chr4_1:42074216-42074235 None:intergenic 30.0%
! ATAATGTGAAGCTTTCTAGT+GGG - chr4_1:42074260-42074279 Msa0548280:CDS 30.0%
TCACTTCTGATTACAAATTG+GGG + chr4_1:42074353-42074372 None:intergenic 30.0%
GTTCACTTCTGATTACAAAT+TGG + chr4_1:42074355-42074374 None:intergenic 30.0%
TTAGATACATCCCAAATGAA+TGG + chr4_1:42074472-42074491 None:intergenic 30.0%
ATCTGGACATAAAACAAAGT+AGG + chr4_1:42074509-42074528 None:intergenic 30.0%
GAGTCAAAAATCAAATGATC+TGG + chr4_1:42074526-42074545 None:intergenic 30.0%
! ACATTATGTGCAAGGTTTTA+TGG + chr4_1:42074548-42074567 None:intergenic 30.0%
AAACCTTGCACATAATGTAT+AGG - chr4_1:42074550-42074569 Msa0548280:intron 30.0%
! TATAGGCCTTTGGATATTTT+AGG - chr4_1:42074567-42074586 Msa0548280:intron 30.0%
AATAAGCTGAAAACTGCTTA+TGG - chr4_1:42074759-42074778 Msa0548280:intron 30.0%
CTGCAAATTAGATCAAGTAT+AGG + chr4_1:42074986-42075005 None:intergenic 30.0%
! GATCTAATTTGCAGAAAATG+TGG - chr4_1:42074992-42075011 Msa0548280:intron 30.0%
GAGATAATAGAGATGAATTC+CGG - chr4_1:42075016-42075035 Msa0548280:intron 30.0%
TATGGAACTGAAGAAAATAG+AGG + chr4_1:42075209-42075228 None:intergenic 30.0%
AAACTGTATTCTAAGTGCTT+TGG - chr4_1:42075248-42075267 Msa0548280:intron 30.0%
! GTTTAATTAGGTGCTTTGTT+TGG - chr4_1:42075339-42075358 Msa0548280:CDS 30.0%
ACTTTCAATTATGCATTGTG+TGG - chr4_1:42075381-42075400 Msa0548280:five_prime_UTR 30.0%
ATATTAAACAAGGCAAACAG+CGG + chr4_1:42075491-42075510 None:intergenic 30.0%
! TCGATTCTTTGTGTTGTTGT+GGG + chr4_1:42071983-42072002 None:intergenic 35.0%
!!! TTGTTTTGAAAACCGACAGT+TGG + chr4_1:42072073-42072092 None:intergenic 35.0%
ACAATTCTCTCTTCTCTTGA+TGG - chr4_1:42072089-42072108 Msa0548280:three_prime_UTR 35.0%
!!! TGAGCTGTTTTTGAAGAAGA+AGG + chr4_1:42072128-42072147 None:intergenic 35.0%
CTTCTTCAAAAACAGCTCAA+AGG - chr4_1:42072129-42072148 Msa0548280:three_prime_UTR 35.0%
CAAAACCCAAAATCCAAACA+AGG + chr4_1:42072372-42072391 None:intergenic 35.0%
!!! CTTGTTTGGATTTTGGGTTT+TGG - chr4_1:42072370-42072389 Msa0548280:exon 35.0%
TTCAACCCAACCAATATCAT+CGG + chr4_1:42072718-42072737 None:intergenic 35.0%
!! TTGACCTAGTGATAATGGTT+GGG - chr4_1:42072805-42072824 Msa0548280:intron 35.0%
!!! GGTTGAGTTTTTTTATCGGT+AGG - chr4_1:42072826-42072845 Msa0548280:intron 35.0%
AGGAATCAAACTCGATATTC+TGG - chr4_1:42072846-42072865 Msa0548280:intron 35.0%
TTGTGATTGCGCTAATTCTT+AGG - chr4_1:42072943-42072962 Msa0548280:intron 35.0%
ATTGGAAGGAAAACTCATGA+TGG + chr4_1:42073186-42073205 None:intergenic 35.0%
GAAGTAAATTTCACTGTTGG+TGG + chr4_1:42073221-42073240 None:intergenic 35.0%
!! TACCGCAAGAAAGTACTATA+AGG - chr4_1:42073570-42073589 Msa0548280:intron 35.0%
! AGCCTTATAGTACTTTCTTG+CGG + chr4_1:42073575-42073594 None:intergenic 35.0%
ATGCCCATTTATACAAGCAA+AGG + chr4_1:42073608-42073627 None:intergenic 35.0%
CTACTACTAATGTTGAAGAC+TGG - chr4_1:42073646-42073665 Msa0548280:intron 35.0%
ACTACTAATGTTGAAGACTG+GGG - chr4_1:42073648-42073667 Msa0548280:intron 35.0%
ATCAATACACATGGAGCTAT+CGG - chr4_1:42073679-42073698 Msa0548280:intron 35.0%
AGCTACAAAGTTAAAGGCTA+AGG - chr4_1:42073762-42073781 Msa0548280:intron 35.0%
! AGTGTTGAAAATTTCACGGT+TGG - chr4_1:42073880-42073899 Msa0548280:intron 35.0%
! GCTTTCCATTAATAGCTTGT+TGG - chr4_1:42073902-42073921 Msa0548280:intron 35.0%
ACAAATAAGTAACCTGTGAC+AGG + chr4_1:42074191-42074210 None:intergenic 35.0%
CATAATGTGAAGCTTTCTAG+TGG - chr4_1:42074259-42074278 Msa0548280:CDS 35.0%
!! TTTAGGATTTAGGCCTTGTT+TGG - chr4_1:42074584-42074603 Msa0548280:intron 35.0%
ATTCACATGTGCTTCAATCT+TGG - chr4_1:42074925-42074944 Msa0548280:intron 35.0%
AGATAAGTTGTATGTTCCTC+TGG + chr4_1:42075116-42075135 None:intergenic 35.0%
! CTTTTTGATCTGTGTAAGCA+TGG - chr4_1:42075158-42075177 Msa0548280:CDS 35.0%
TTTCTTCAGTTCCATATGCT+AGG - chr4_1:42075213-42075232 Msa0548280:intron 35.0%
TGTTTCCAATTCCTAGCATA+TGG + chr4_1:42075227-42075246 None:intergenic 35.0%
! AATGCTGAACCTGTTTTCTT+AGG - chr4_1:42075450-42075469 Msa0548280:five_prime_UTR 35.0%
! AACCTGTTTTCTTAGGAATC+AGG - chr4_1:42075457-42075476 Msa0548280:five_prime_UTR 35.0%
ATCCTGATTCCTAAGAAAAC+AGG + chr4_1:42075462-42075481 None:intergenic 35.0%
! CTTTGTGTTGTTGTGGGTTT+GGG + chr4_1:42071977-42071996 None:intergenic 40.0%
! TCTTTGTGTTGTTGTGGGTT+TGG + chr4_1:42071978-42071997 None:intergenic 40.0%
! CTCGATTCTTTGTGTTGTTG+TGG + chr4_1:42071984-42072003 None:intergenic 40.0%
AAAGAAAGAGAGAGAGTCAC+AGG - chr4_1:42072010-42072029 Msa0548280:three_prime_UTR 40.0%
AAGAAAGAGAGAGAGTCACA+GGG - chr4_1:42072011-42072030 Msa0548280:three_prime_UTR 40.0%
!!! CTGTTTTTGAAGAAGAAGGC+TGG + chr4_1:42072124-42072143 None:intergenic 40.0%
GTAAGCCCTTATTCCTTGTT+TGG - chr4_1:42072356-42072375 Msa0548280:three_prime_UTR 40.0%
TTGTCAGTAGGAATCAGACT+CGG - chr4_1:42072743-42072762 Msa0548280:intron 40.0%
ATCACTAGGTCAAGTGCAAA+CGG + chr4_1:42072798-42072817 None:intergenic 40.0%
TGCACTTGACCTAGTGATAA+TGG - chr4_1:42072800-42072819 Msa0548280:intron 40.0%
!! CTTGACCTAGTGATAATGGT+TGG - chr4_1:42072804-42072823 Msa0548280:intron 40.0%
TCAACCCAACCATTATCACT+AGG + chr4_1:42072812-42072831 None:intergenic 40.0%
GCTTGGATTTCTTACAGTGA+GGG - chr4_1:42073146-42073165 Msa0548280:intron 40.0%
GGACTATTTGGGTAATTGGA+AGG + chr4_1:42073200-42073219 None:intergenic 40.0%
!! TGGTGGACTATTTGGGTAAT+TGG + chr4_1:42073204-42073223 None:intergenic 40.0%
!! TCACTGTTGGTGGACTATTT+GGG + chr4_1:42073211-42073230 None:intergenic 40.0%
!! TTCACTGTTGGTGGACTATT+TGG + chr4_1:42073212-42073231 None:intergenic 40.0%
TCAGAGATATGGCATCCTAA+TGG - chr4_1:42073239-42073258 Msa0548280:intron 40.0%
AGATATGGCATCCTAATGGT+TGG - chr4_1:42073243-42073262 Msa0548280:intron 40.0%
CTTGCTAGCTCATAACCATT+AGG + chr4_1:42073392-42073411 None:intergenic 40.0%
GTATCACTTACGGTATGAAC+AGG + chr4_1:42073428-42073447 None:intergenic 40.0%
GACACCCAACAAGCTATTAA+TGG + chr4_1:42073910-42073929 None:intergenic 40.0%
! GAGTAGCATACGATTTTCCT+AGG + chr4_1:42073932-42073951 None:intergenic 40.0%
TTTGCAGGGGATTCATCATT+AGG + chr4_1:42074098-42074117 None:intergenic 40.0%
GCATCTTAACAGTAGTCAGT+AGG - chr4_1:42074229-42074248 Msa0548280:CDS 40.0%
TTTCTGCACGACCATTCATT+TGG - chr4_1:42074458-42074477 Msa0548280:intron 40.0%
TTCTGCACGACCATTCATTT+GGG - chr4_1:42074459-42074478 Msa0548280:intron 40.0%
AGGCCTATACATTATGTGCA+AGG + chr4_1:42074556-42074575 None:intergenic 40.0%
GCACATAATGTATAGGCCTT+TGG - chr4_1:42074557-42074576 Msa0548280:intron 40.0%
AAGCTATCATTGAGAGCTCA+TGG - chr4_1:42074735-42074754 Msa0548280:intron 40.0%
TAGAGATGAATTCCGGAAGA+AGG - chr4_1:42075023-42075042 Msa0548280:intron 40.0%
CTTGTGACTTCCTTACACAT+CGG + chr4_1:42075053-42075072 None:intergenic 40.0%
! TCTGTGTAAGCATGGCTTTT+TGG - chr4_1:42075166-42075185 Msa0548280:CDS 40.0%
!! AAGCATGGCTTTTTGGAAGT+TGG - chr4_1:42075173-42075192 Msa0548280:CDS 40.0%
! AAGAAAATAGAGGTGCAGTG+TGG + chr4_1:42075199-42075218 None:intergenic 40.0%
CAGTTCCATATGCTAGGAAT+TGG - chr4_1:42075219-42075238 Msa0548280:intron 40.0%
TGTATTCTAAGTGCTTTGGC+TGG - chr4_1:42075252-42075271 Msa0548280:intron 40.0%
TTGTGTGGTTATGCTCTGAT+TGG - chr4_1:42075396-42075415 Msa0548280:five_prime_UTR 40.0%
CTTTGCAAAAACCCTGTCGA+TGG - chr4_1:42072255-42072274 Msa0548280:three_prime_UTR 45.0%
CAGCAGAAAATCCATCGACA+GGG + chr4_1:42072269-42072288 None:intergenic 45.0%
!! CGATGGATTTTCTGCTGGTT+TGG - chr4_1:42072272-42072291 Msa0548280:three_prime_UTR 45.0%
! GAATGGAGTGTCACCGTAAT+TGG - chr4_1:42072315-42072334 Msa0548280:three_prime_UTR 45.0%
AGTATCAGGGGGACCAATTA+CGG + chr4_1:42072331-42072350 None:intergenic 45.0%
!! GCTTACTAGAGAGTATCAGG+GGG + chr4_1:42072342-42072361 None:intergenic 45.0%
!! GGCTTACTAGAGAGTATCAG+GGG + chr4_1:42072343-42072362 None:intergenic 45.0%
!! GGGCTTACTAGAGAGTATCA+GGG + chr4_1:42072344-42072363 None:intergenic 45.0%
!! AGGGCTTACTAGAGAGTATC+AGG + chr4_1:42072345-42072364 None:intergenic 45.0%
!! AGGAATCAAACTCGGTGTTC+CGG - chr4_1:42072672-42072691 Msa0548280:intron 45.0%
ACACTGCTCACCGATGATAT+TGG - chr4_1:42072705-42072724 Msa0548280:intron 45.0%
TGCTCACCGATGATATTGGT+TGG - chr4_1:42072709-42072728 Msa0548280:intron 45.0%
! GCTCACCGATGATATTGGTT+GGG - chr4_1:42072710-42072729 Msa0548280:intron 45.0%
GGTGTGCAGCATATGTGATT+CGG + chr4_1:42072773-42072792 None:intergenic 45.0%
CACTGTCAATAGCAACCAGT+TGG + chr4_1:42072891-42072910 None:intergenic 45.0%
CAACTAGAGGGAAAGCAGAA+TGG + chr4_1:42073025-42073044 None:intergenic 45.0%
GGCTTGGATTTCTTACAGTG+AGG - chr4_1:42073145-42073164 Msa0548280:intron 45.0%
TGGATTTCTTACAGTGAGGG+AGG - chr4_1:42073149-42073168 Msa0548280:intron 45.0%
GGATTTCTTACAGTGAGGGA+GGG - chr4_1:42073150-42073169 Msa0548280:intron 45.0%
TTGCAGTATACACTGATGGC+CGG - chr4_1:42073330-42073349 Msa0548280:intron 45.0%
GGAGGATTGATATGCAAACC+CGG + chr4_1:42073352-42073371 None:intergenic 45.0%
ATATCAATCCTCCATCCTCC+TGG - chr4_1:42073359-42073378 Msa0548280:CDS 45.0%
TAACCATTAGGATCGTCACC+AGG + chr4_1:42073380-42073399 None:intergenic 45.0%
!! AATAGCTTGTTGGGTGTCCT+AGG - chr4_1:42073912-42073931 Msa0548280:intron 45.0%
AGGGGATTCATCATTAGGAC+TGG + chr4_1:42074093-42074112 None:intergenic 45.0%
! TGCTGCTTCAACATTTGCAG+GGG + chr4_1:42074111-42074130 None:intergenic 45.0%
! CTGCTGCTTCAACATTTGCA+GGG + chr4_1:42074112-42074131 None:intergenic 45.0%
! ACTGCTGCTTCAACATTTGC+AGG + chr4_1:42074113-42074132 None:intergenic 45.0%
CCTGTGACAGGAAAGAATGT+AGG + chr4_1:42074179-42074198 None:intergenic 45.0%
CCTACATTCTTTCCTGTCAC+AGG - chr4_1:42074176-42074195 Msa0548280:intron 45.0%
GCTGAAAACTGCTTATGGAC+AGG - chr4_1:42074764-42074783 Msa0548280:intron 45.0%
! GGACAGGTCATATGCTGTTT+CGG - chr4_1:42074780-42074799 Msa0548280:intron 45.0%
GGCATAAGCAATTGTGAGAC+TGG + chr4_1:42074819-42074838 None:intergenic 45.0%
GATGAATTCCGGAAGAAGGT+TGG - chr4_1:42075027-42075046 Msa0548280:intron 45.0%
TTGTGATTGCCTGCACATCA+CGG - chr4_1:42075078-42075097 Msa0548280:intron 45.0%
ATTCTAAGTGCTTTGGCTGG+TGG - chr4_1:42075255-42075274 Msa0548280:intron 45.0%
TTTGGCTGGTGGTTTGACAT+GGG - chr4_1:42075266-42075285 Msa0548280:intron 45.0%
GTGGTTATGCTCTGATTGGT+TGG - chr4_1:42075400-42075419 Msa0548280:five_prime_UTR 45.0%
TAAACAAGGCAAACAGCGGA+GGG + chr4_1:42075487-42075506 None:intergenic 45.0%
TTAAACAAGGCAAACAGCGG+AGG + chr4_1:42075488-42075507 None:intergenic 45.0%
CCAGCAGAAAATCCATCGAC+AGG + chr4_1:42072270-42072289 None:intergenic 50.0%
!! CCTGTCGATGGATTTTCTGC+TGG - chr4_1:42072267-42072286 Msa0548280:three_prime_UTR 50.0%
CTAGGTCAAGTGCAAACGGT+TGG + chr4_1:42072794-42072813 None:intergenic 50.0%
TGCAGTATACACTGATGGCC+GGG - chr4_1:42073331-42073350 Msa0548280:intron 50.0%
! AGAAGGTTGGCCGATGTGTA+AGG - chr4_1:42075040-42075059 Msa0548280:intron 50.0%
!! ACAAAAGCACCGTGATGTGC+AGG + chr4_1:42075090-42075109 None:intergenic 50.0%
! ACGGTGCTTTTGTGAACCAG+AGG - chr4_1:42075097-42075116 Msa0548280:intron 50.0%
CTTTGGCTGGTGGTTTGACA+TGG - chr4_1:42075265-42075284 Msa0548280:intron 50.0%
GAGCAGTGTGTGCAAGTGTC+CGG + chr4_1:42072694-42072713 None:intergenic 55.0%
TCAGACACATGCGCACCAAC+TGG - chr4_1:42072873-42072892 Msa0548280:intron 55.0%
TAGGATCGTCACCAGGAGGA+TGG + chr4_1:42073373-42073392 None:intergenic 55.0%
CCATTAGGATCGTCACCAGG+AGG + chr4_1:42073377-42073396 None:intergenic 55.0%
! CCTCCTGGTGACGATCCTAA+TGG - chr4_1:42073374-42073393 Msa0548280:CDS 55.0%
ATGAGCTAGCAAGTGAGCGC+TGG - chr4_1:42073399-42073418 Msa0548280:intron 55.0%
CACATCGGCCAACCTTCTTC+CGG + chr4_1:42075038-42075057 None:intergenic 55.0%
GATCGTCACCAGGAGGATGG+AGG + chr4_1:42073370-42073389 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42071955 42075513 42071955 ID=Msa0548280;Name=Msa0548280
chr4_1 mRNA 42071955 42075513 42071955 ID=Msa0548280-mRNA-1;Parent=Msa0548280;Name=Msa0548280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=153|1|1|1|1|1|6|430|166
chr4_1 exon 42071955 42072462 42071955 ID=Msa0548280-mRNA-1:exon:10874;Parent=Msa0548280-mRNA-1
chr4_1 exon 42073338 42073415 42073338 ID=Msa0548280-mRNA-1:exon:10873;Parent=Msa0548280-mRNA-1
chr4_1 exon 42074032 42074132 42074032 ID=Msa0548280-mRNA-1:exon:10872;Parent=Msa0548280-mRNA-1
chr4_1 exon 42074208 42074305 42074208 ID=Msa0548280-mRNA-1:exon:10871;Parent=Msa0548280-mRNA-1
chr4_1 exon 42075113 42075215 42075113 ID=Msa0548280-mRNA-1:exon:10870;Parent=Msa0548280-mRNA-1
chr4_1 exon 42075318 42075513 42075318 ID=Msa0548280-mRNA-1:exon:10869;Parent=Msa0548280-mRNA-1
chr4_1 five_prime_UTR 42075361 42075513 42075361 ID=Msa0548280-mRNA-1:five_prime_utr;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42075318 42075360 42075318 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42075113 42075215 42075113 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42074208 42074305 42074208 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42074032 42074132 42074032 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42073338 42073415 42073338 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 CDS 42072385 42072462 42072385 ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1 three_prime_UTR 42071955 42072384 42071955 ID=Msa0548280-mRNA-1:three_prime_utr;Parent=Msa0548280-mRNA-1
Gene Sequence

>Msa0548280

ATGGCGTCTCAAGCCAGCCTTCTTCTTCAAAAACAGCTCAAAGATCTTTGCAAAAACCCTGTCGATGGATTTTCTGCTGGTTTGGTTGATGAAAACAATATTTTTGAATGGAGTGTCACCGTAATTGGTCCCCCTGATACTCTCTATGAGGGAGGGTTTTTCAATGCCATCATGAGTTTTCCTTCCAATTACCCAAATAGTCCACCAACAGTGAAATTTACTTCAGAGATATGGCATCCTAATGTATACACTGATGGCCGGGTTTGCATATCAATCCTCCATCCTCCTGGTGACGATCCTAATGGTTATGAGCTAGCAAGTGAGCGCTGGACACCTGTTCATACCGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCCCCTGCAAATGTTGAAGCAGCAAAAATGTGGAGAGATAATAGAGATGAATTCCGGAAGAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA

Protein sequence

>Msa0548280

MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKMWRDNRDEFRKKVGRCVRKSQEML*