AlfalfaGEDB | Msa0548280

M. sativa cultivar zhongmu-4 / Msa0548280

KEGG: K10575
GO: GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548280	XP_003606648.1	100.000	166	0	0	1	166	1	166	1.79e-120	347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548280	sp\|Q42540\|UBC7_ARATH	89.759	166	17	0	1	166	1	166	7.29e-104	297

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548280	G7JTS6	100.000	166	0	0	1	166	1	166	8.53e-121	347

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0548280	0.871107	8.789628e-67	-8.615850e-47
Msa0006400	Msa0548280	-0.808875	2.498429e-50	-8.615850e-47
Msa0007080	Msa0548280	-0.801296	9.625330e-49	-8.615850e-47
Msa0013050	Msa0548280	0.805347	1.394710e-49	-8.615850e-47
Msa0014710	Msa0548280	-0.800014	1.758209e-48	-8.615850e-47
Msa0017510	Msa0548280	-0.836465	9.209315e-57	-8.615850e-47
Msa0024210	Msa0548280	0.807807	4.220467e-50	-8.615850e-47
Msa0031360	Msa0548280	-0.802294	6.005960e-49	-8.615850e-47
Msa0038350	Msa0548280	0.823490	1.347128e-53	-8.615850e-47
Msa0039420	Msa0548280	0.819275	1.264786e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548280	MtrunA17_Chr4g0031181	100.000	166	0	0	1	166	1	166	1.64e-124	347
Msa0548280	MtrunA17_Chr2g0328001	93.373	166	11	0	1	166	1	166	2.68e-107	303
Msa0548280	MtrunA17_Chr8g0362321	38.272	162	86	2	1	162	1	148	9.27e-38	126
Msa0548280	MtrunA17_Chr4g0060351	38.272	162	86	2	1	162	1	148	3.34e-37	125
Msa0548280	MtrunA17_Chr7g0275361	37.838	148	78	2	5	152	2	135	4.41e-33	114
Msa0548280	MtrunA17_Chr3g0108261	37.162	148	79	2	5	152	2	135	1.78e-31	110
Msa0548280	MtrunA17_Chr5g0432831	37.162	148	79	2	5	152	2	135	2.29e-31	110
Msa0548280	MtrunA17_Chr1g0154011	36.486	148	80	2	5	152	2	135	8.13e-31	108
Msa0548280	MtrunA17_Chr4g0037011	37.415	147	78	2	5	151	2	134	9.56e-31	108
Msa0548280	MtrunA17_Chr8g0369311	35.135	148	82	2	5	152	58	191	3.02e-29	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0548280	AT5G59300.1	89.759	166	17	0	1	166	1	166	7.41e-105	297
Msa0548280	AT3G46460.1	88.554	166	19	0	1	166	1	166	1.69e-101	289
Msa0548280	AT3G55380.1	87.805	164	20	0	3	166	4	167	1.14e-100	286
Msa0548280	AT3G55380.2	71.717	198	22	1	3	166	4	201	2.17e-92	267
Msa0548280	AT3G46460.3	88.034	117	14	0	50	166	8	124	2.70e-75	221
Msa0548280	AT3G46460.2	88.034	117	14	0	50	166	8	124	2.70e-75	221
Msa0548280	AT2G02760.1	37.654	162	87	2	1	162	1	148	1.27e-36	124
Msa0548280	AT2G02760.2	37.654	162	87	2	1	162	1	148	1.27e-36	124
Msa0548280	AT2G02760.4	37.654	162	87	2	1	162	1	148	1.27e-36	124
Msa0548280	AT2G02760.3	37.654	162	87	2	1	162	1	148	1.27e-36	124

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Find 78 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTATTCTAAGTGCTT+TGG	0.415430	4_1:-42072198	Msa0548280:three_prime_UTR
AAAGAAAGAGAGAGAGTCAC+AGG	0.396711	4_1:-42075436	Msa0548280:five_prime_UTR
AAGAAAATAGAGGTGCAGTG+TGG	0.725971	4_1:+42072250	None:intergenic
AAGAAAGAGAGAGAGTCACA+GGG	0.661627	4_1:-42075435	Msa0548280:five_prime_UTR
ACAAAAGCACCGTGATGTGC+AGG	0.508969	4_1:+42072359	None:intergenic
ACAATTCTCTCTTCTCTTGA+TGG	0.299779	4_1:-42075357	Msa0548280:exon
ACTGCTGCTTCAACATTTGC+AGG	0.332046	4_1:+42073336	None:intergenic
ACTTTCAATTATGCATTGTG+TGG	0.572776	4_1:-42072065	Msa0548280:three_prime_UTR
AGAAGGTTGGCCGATGTGTA+AGG	0.477304	4_1:-42072406	Msa0548280:CDS
AGATAAGTTGTATGTTCCTC+TGG	0.411546	4_1:+42072333	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAGAGAAAGAAAGATGGT+TGG	+	chr4_1:42072040-42072059	None:intergenic	30.0%
CAAAATCCAAACAAGGAATA+AGG	+	chr4_1:42072365-42072384	None:intergenic	30.0%
ATACTGTTAACTATTGGGAT+TGG	-	chr4_1:42072620-42072639	Msa0548280:intron	30.0%
CTATTGACAGTGATAATTGT+TGG	-	chr4_1:42072899-42072918	Msa0548280:intron	30.0%
CTTTCCTTTGCTTGTATAAA+TGG	-	chr4_1:42073601-42073620	Msa0548280:intron	30.0%
TACTACTAATGTTGAAGACT+GGG	-	chr4_1:42073647-42073666	Msa0548280:intron	30.0%
CAAAATATAAGTAGCGTGAA+AGG	-	chr4_1:42073715-42073734	Msa0548280:intron	30.0%
ATGAAGAGCTACAAAGTTAA+AGG	-	chr4_1:42073756-42073775	Msa0548280:intron	30.0%
CAAGTATATGAAATCACAAG+TGG	+	chr4_1:42073963-42073982	None:intergenic	30.0%
AAGATGCCTTTATGTTTACT+AGG	+	chr4_1:42074216-42074235	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	42071955	42075513	42071955	ID=Msa0548280;Name=Msa0548280
chr4_1	mRNA	42071955	42075513	42071955	ID=Msa0548280-mRNA-1;Parent=Msa0548280;Name=Msa0548280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=153\|1\|1\|1\|1\|1\|6\|430\|166
chr4_1	exon	42071955	42072462	42071955	ID=Msa0548280-mRNA-1:exon:10874;Parent=Msa0548280-mRNA-1
chr4_1	exon	42073338	42073415	42073338	ID=Msa0548280-mRNA-1:exon:10873;Parent=Msa0548280-mRNA-1
chr4_1	exon	42074032	42074132	42074032	ID=Msa0548280-mRNA-1:exon:10872;Parent=Msa0548280-mRNA-1
chr4_1	exon	42074208	42074305	42074208	ID=Msa0548280-mRNA-1:exon:10871;Parent=Msa0548280-mRNA-1
chr4_1	exon	42075113	42075215	42075113	ID=Msa0548280-mRNA-1:exon:10870;Parent=Msa0548280-mRNA-1
chr4_1	exon	42075318	42075513	42075318	ID=Msa0548280-mRNA-1:exon:10869;Parent=Msa0548280-mRNA-1
chr4_1	five_prime_UTR	42075361	42075513	42075361	ID=Msa0548280-mRNA-1:five_prime_utr;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42075318	42075360	42075318	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42075113	42075215	42075113	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42074208	42074305	42074208	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42074032	42074132	42074032	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42073338	42073415	42073338	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	CDS	42072385	42072462	42072385	ID=Msa0548280-mRNA-1:cds;Parent=Msa0548280-mRNA-1
chr4_1	three_prime_UTR	42071955	42072384	42071955	ID=Msa0548280-mRNA-1:three_prime_utr;Parent=Msa0548280-mRNA-1

Gene Sequence

>Msa0548280

ATGGCGTCTCAAGCCAGCCTTCTTCTTCAAAAACAGCTCAAAGATCTTTGCAAAAACCCTGTCGATGGATTTTCTGCTGGTTTGGTTGATGAAAACAATATTTTTGAATGGAGTGTCACCGTAATTGGTCCCCCTGATACTCTCTATGAGGGAGGGTTTTTCAATGCCATCATGAGTTTTCCTTCCAATTACCCAAATAGTCCACCAACAGTGAAATTTACTTCAGAGATATGGCATCCTAATGTATACACTGATGGCCGGGTTTGCATATCAATCCTCCATCCTCCTGGTGACGATCCTAATGGTTATGAGCTAGCAAGTGAGCGCTGGACACCTGTTCATACCGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCCCCTGCAAATGTTGAAGCAGCAAAAATGTGGAGAGATAATAGAGATGAATTCCGGAAGAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA

Protein sequence

>Msa0548280

MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKMWRDNRDEFRKKVGRCVRKSQEML*