Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507390 | XP_013460633.1 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 4.84e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507390 | sp|Q9LVH4|CAR4_ARATH | 65.476 | 168 | 58 | 0 | 26 | 193 | 10 | 177 | 2.98e-83 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507390 | B7FGT4 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 2.31e-114 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0507380 | Msa0507390 | 0.990084 | 5.496425e-181 | -8.615850e-47 |
| Msa0507390 | Msa1244770 | -0.812743 | 3.636509e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507390 | MtrunA17_Chr3g0111361 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 4.45e-118 | 332 |
| Msa0507390 | MtrunA17_Chr2g0280981 | 82.209 | 163 | 29 | 0 | 31 | 193 | 2 | 164 | 3.48e-101 | 289 |
| Msa0507390 | MtrunA17_Chr8g0393081 | 66.867 | 166 | 55 | 0 | 28 | 193 | 16 | 181 | 2.00e-85 | 249 |
| Msa0507390 | MtrunA17_Chr6g0478401 | 65.663 | 166 | 57 | 0 | 28 | 193 | 12 | 177 | 1.64e-80 | 237 |
| Msa0507390 | MtrunA17_Chr1g0160811 | 61.585 | 164 | 62 | 1 | 31 | 193 | 4 | 167 | 1.19e-73 | 219 |
| Msa0507390 | MtrunA17_Chr4g0043861 | 53.659 | 164 | 76 | 0 | 29 | 192 | 1 | 164 | 2.15e-63 | 193 |
| Msa0507390 | MtrunA17_Chr8g0352751 | 46.203 | 158 | 84 | 1 | 29 | 185 | 1 | 158 | 8.43e-44 | 143 |
| Msa0507390 | MtrunA17_Chr8g0380381 | 42.500 | 160 | 91 | 1 | 29 | 187 | 85 | 244 | 6.63e-41 | 139 |
| Msa0507390 | MtrunA17_Chr2g0290631 | 43.312 | 157 | 87 | 1 | 29 | 183 | 1 | 157 | 5.04e-39 | 131 |
| Msa0507390 | MtrunA17_Chr2g0292461 | 41.071 | 168 | 95 | 2 | 24 | 187 | 160 | 327 | 1.80e-38 | 134 |
| Msa0507390 | MtrunA17_Chr3g0083541 | 44.444 | 162 | 81 | 2 | 29 | 185 | 239 | 396 | 6.55e-38 | 134 |
| Msa0507390 | MtrunA17_Chr2g0290721 | 39.744 | 78 | 46 | 1 | 36 | 112 | 3 | 80 | 7.31e-12 | 63.5 |
| Msa0507390 | MtrunA17_Chr1g0156811 | 35.238 | 105 | 63 | 3 | 13 | 112 | 239 | 343 | 2.14e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507390 | AT3G17980.1 | 65.476 | 168 | 58 | 0 | 26 | 193 | 10 | 177 | 3.03e-84 | 247 |
| Msa0507390 | AT5G37740.1 | 66.071 | 168 | 54 | 1 | 29 | 193 | 1 | 168 | 9.00e-81 | 238 |
| Msa0507390 | AT1G48590.4 | 66.867 | 166 | 54 | 1 | 28 | 193 | 5 | 169 | 1.15e-80 | 237 |
| Msa0507390 | AT1G48590.1 | 66.867 | 166 | 54 | 1 | 28 | 193 | 5 | 169 | 1.15e-80 | 237 |
| Msa0507390 | AT1G48590.2 | 66.867 | 166 | 54 | 1 | 28 | 193 | 36 | 200 | 1.63e-80 | 238 |
| Msa0507390 | AT1G73580.1 | 61.446 | 166 | 64 | 0 | 28 | 193 | 3 | 168 | 2.94e-78 | 231 |
| Msa0507390 | AT1G66360.1 | 63.415 | 164 | 58 | 1 | 29 | 190 | 1 | 164 | 2.39e-77 | 229 |
| Msa0507390 | AT5G37740.2 | 62.360 | 178 | 54 | 2 | 29 | 193 | 1 | 178 | 3.11e-77 | 229 |
| Msa0507390 | AT1G70810.1 | 63.030 | 165 | 61 | 0 | 29 | 193 | 1 | 165 | 1.29e-74 | 222 |
| Msa0507390 | AT1G70790.3 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507390 | AT1G70790.2 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507390 | AT1G70790.1 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507390 | AT2G01540.1 | 58.896 | 163 | 65 | 1 | 33 | 193 | 6 | 168 | 6.49e-67 | 203 |
| Msa0507390 | AT1G23140.1 | 56.442 | 163 | 71 | 0 | 29 | 191 | 1 | 163 | 4.48e-65 | 197 |
| Msa0507390 | AT1G70800.1 | 54.438 | 169 | 77 | 0 | 25 | 193 | 6 | 174 | 4.82e-65 | 198 |
| Msa0507390 | AT1G48590.3 | 53.614 | 166 | 44 | 2 | 28 | 193 | 36 | 168 | 3.34e-56 | 175 |
| Msa0507390 | AT1G70790.4 | 60.769 | 130 | 49 | 1 | 66 | 193 | 2 | 131 | 5.41e-52 | 164 |
| Msa0507390 | AT3G07940.1 | 46.154 | 156 | 83 | 1 | 29 | 183 | 224 | 379 | 7.22e-42 | 145 |
| Msa0507390 | AT4G05330.2 | 38.579 | 197 | 108 | 3 | 2 | 185 | 101 | 297 | 1.92e-40 | 139 |
| Msa0507390 | AT5G47710.1 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507390 | AT5G47710.2 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507390 | AT5G47710.3 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507390 | AT5G47710.4 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507390 | AT4G05330.3 | 38.579 | 197 | 108 | 3 | 2 | 185 | 136 | 332 | 5.74e-40 | 139 |
| Msa0507390 | AT4G05330.1 | 38.579 | 197 | 108 | 3 | 2 | 185 | 136 | 332 | 5.74e-40 | 139 |
| Msa0507390 | AT4G21160.2 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507390 | AT4G21160.3 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507390 | AT4G21160.1 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507390 | AT4G21160.4 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507390 | AT1G03370.1 | 36.458 | 96 | 60 | 1 | 36 | 130 | 3 | 98 | 5.50e-13 | 67.0 |
| Msa0507390 | AT1G03370.2 | 36.458 | 96 | 60 | 1 | 36 | 130 | 3 | 98 | 5.55e-13 | 67.0 |
Find 57 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGCTTGGACGACAAAA+TGG | 0.224120 | 3_4:-54866219 | Msa0507390:CDS |
| TTGCACTGGGTTGACATTCC+TGG | 0.251961 | 3_4:-54865987 | Msa0507390:CDS |
| TCCTTATGTTGTCATCAAAA+TGG | 0.255133 | 3_4:-54867907 | Msa0507390:CDS |
| CAGAAGAGAGTCACATTGTT+TGG | 0.286449 | 3_4:-54866082 | Msa0507390:CDS |
| CTTGTAACTATAGCCTCATT+TGG | 0.292906 | 3_4:+54866134 | None:intergenic |
| TCTAACACATTCTGTGTTCA+TGG | 0.302665 | 3_4:-54868006 | Msa0507390:CDS |
| TTAGTCTAAGAACCATGTTT+TGG | 0.329440 | 3_4:+54866042 | None:intergenic |
| TAATAGTGAGTGAAAAGAAA+TGG | 0.368459 | 3_4:-54865800 | Msa0507390:three_prime_UTR |
| TCCTGGTTCAAAGGGTATCT+AGG | 0.382188 | 3_4:-54865970 | Msa0507390:exon |
| TTTCACTCACTATTAGTCAT+TGG | 0.388349 | 3_4:+54865808 | None:intergenic |
| GAATGTCAACCCAGTGCAAC+TGG | 0.390071 | 3_4:+54865991 | None:intergenic |
| AGTCACATTGTTTGGAAAGA+TGG | 0.401327 | 3_4:-54866074 | Msa0507390:CDS |
| TGTCATCAAAATGGGAAAAC+AGG | 0.408531 | 3_4:-54867898 | Msa0507390:intron |
| CCTTATGTTGTCATCAAAAT+GGG | 0.422679 | 3_4:-54867906 | Msa0507390:CDS |
| AATAGTGAGTGAAAAGAAAT+GGG | 0.432071 | 3_4:-54865799 | Msa0507390:three_prime_UTR |
| GTGTTCATGGAGAATTTGTT+GGG | 0.441085 | 3_4:-54867993 | Msa0507390:CDS |
| TTCAGCTTGGACGACAAAAT+GGG | 0.451366 | 3_4:-54866218 | Msa0507390:CDS |
| TGGAGTATGAGGATCTGAAA+TGG | 0.452578 | 3_4:+54866865 | None:intergenic |
| AAGTGGAACTCCAGTTGCAC+TGG | 0.453056 | 3_4:-54866001 | Msa0507390:CDS |
| CAGATAGAAAACGTGATGGC+AGG | 0.458744 | 3_4:+54868049 | None:intergenic |
| TTGTAACTATAGCCTCATTT+GGG | 0.463736 | 3_4:+54866135 | None:intergenic |
| GGTTGACATTCCTGGTTCAA+AGG | 0.472769 | 3_4:-54865979 | Msa0507390:CDS |
| TGTGTTCATGGAGAATTTGT+TGG | 0.478285 | 3_4:-54867994 | Msa0507390:CDS |
| CTCAAAATTCATGTTCAAAG+AGG | 0.479689 | 3_4:-54867966 | Msa0507390:CDS |
| GCAGTAAAGATGCGGTTGGC+AGG | 0.486595 | 3_4:-54866161 | Msa0507390:CDS |
| AAGTTACTTACTAGATGGAT+TGG | 0.500412 | 3_4:+54866845 | None:intergenic |
| GACTAAGAAATGTTGAATGT+GGG | 0.501409 | 3_4:-54866025 | Msa0507390:CDS |
| GTTGACATTCCTGGTTCAAA+GGG | 0.509321 | 3_4:-54865978 | Msa0507390:CDS |
| ACTAGATGGATTGGAGTATG+AGG | 0.510431 | 3_4:+54866854 | None:intergenic |
| TGATGCAGAAGCTGAAGACT+AGG | 0.517179 | 3_4:-54866937 | Msa0507390:intron |
| AAATGTTGAATGTGGGGAAG+TGG | 0.522688 | 3_4:-54866018 | Msa0507390:CDS |
| CAAATGAGGCTATAGTTACA+AGG | 0.526356 | 3_4:-54866133 | Msa0507390:CDS |
| AGACTAAGAAATGTTGAATG+TGG | 0.533532 | 3_4:-54866026 | Msa0507390:CDS |
| AATGCAGTTTGTGTATGATA+AGG | 0.538833 | 3_4:-54866246 | Msa0507390:intron |
| AGATAGAAAACGTGATGGCA+GGG | 0.558943 | 3_4:+54868050 | None:intergenic |
| GTCAAGTCCTCGTCCCACTC+AGG | 0.564180 | 3_4:+54866893 | None:intergenic |
| ACCTAGATACCCTTTGAACC+AGG | 0.570746 | 3_4:+54865969 | None:intergenic |
| AATTCAAGTCTAAATATGCA+AGG | 0.571659 | 3_4:+54865760 | None:intergenic |
| TGATAAGGACACATTCAGCT+TGG | 0.578342 | 3_4:-54866231 | Msa0507390:CDS |
| TCTAAATCCTGAGTGGGACG+AGG | 0.583435 | 3_4:-54866900 | Msa0507390:CDS |
| TGAAGCAGTAAAGATGCGGT+TGG | 0.586646 | 3_4:-54866165 | Msa0507390:CDS |
| GTTGGCAGGTCTCCCAAATG+AGG | 0.587204 | 3_4:-54866147 | Msa0507390:CDS |
| GATAGAAAACGTGATGGCAG+GGG | 0.587431 | 3_4:+54868051 | None:intergenic |
| TCAGCTTGGACGACAAAATG+GGG | 0.593533 | 3_4:-54866217 | Msa0507390:CDS |
| GAAGAATCTAAATCCTGAGT+GGG | 0.594479 | 3_4:-54866906 | Msa0507390:CDS |
| AGTGGAACTCCAGTTGCACT+GGG | 0.596489 | 3_4:-54866000 | Msa0507390:CDS |
| ACTAAGAAATGTTGAATGTG+GGG | 0.600301 | 3_4:-54866024 | Msa0507390:CDS |
| GTATAAGTATATGTTTACAT+TGG | 0.606188 | 3_4:-54868081 | None:intergenic |
| ATTCAAGTCTAAATATGCAA+GGG | 0.608988 | 3_4:+54865761 | None:intergenic |
| GATGCAGAAGCTGAAGACTA+GGG | 0.620713 | 3_4:-54866936 | Msa0507390:intron |
| TATATGTTTACATTGGTCAG+AGG | 0.621459 | 3_4:-54868074 | Msa0507390:CDS |
| TTCAGCTTATGTAATGTACA+AGG | 0.624532 | 3_4:-54865734 | Msa0507390:three_prime_UTR |
| ATTTCAGATAGAAAACGTGA+TGG | 0.647910 | 3_4:+54868045 | None:intergenic |
| AAATGAGGCTATAGTTACAA+GGG | 0.662654 | 3_4:-54866132 | Msa0507390:CDS |
| AGAAGAATCTAAATCCTGAG+TGG | 0.665518 | 3_4:-54866907 | Msa0507390:CDS |
| GGGGACGCTGAGTTTGACAT+CGG | 0.670252 | 3_4:-54866197 | Msa0507390:CDS |
| CAGCTTGGACGACAAAATGG+GGG | 0.704105 | 3_4:-54866216 | Msa0507390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATAAATGAAAAATTT+AGG | - | chr3_4:54866981-54867000 | Msa0507390:intron | 10.0% |
| !!! | TCATTTTGTCAAATTATTAT+TGG | + | chr3_4:54866248-54866267 | None:intergenic | 15.0% |
| !!! | CGAAAATAAGTTATATTTTA+GGG | - | chr3_4:54867180-54867199 | Msa0507390:intron | 15.0% |
| !! | ACTATCTGAATATTAAAAAA+TGG | - | chr3_4:54867457-54867476 | Msa0507390:intron | 15.0% |
| !!! | GATCTTTTTGTTAATCAATT+AGG | - | chr3_4:54865909-54865928 | Msa0507390:three_prime_UTR | 20.0% |
| !! | AATCACAGCTATATATTATA+TGG | - | chr3_4:54866497-54866516 | Msa0507390:intron | 20.0% |
| !!! | CTATTTTCTCAAATTACTAA+CGG | + | chr3_4:54866660-54866679 | None:intergenic | 20.0% |
| !!! | TGTGTTTCAAATCAAAATTT+TGG | - | chr3_4:54866955-54866974 | Msa0507390:intron | 20.0% |
| !!! | TATAACTTATTTTCGCTATA+AGG | + | chr3_4:54867175-54867194 | None:intergenic | 20.0% |
| !!! | GCGAAAATAAGTTATATTTT+AGG | - | chr3_4:54867179-54867198 | Msa0507390:intron | 20.0% |
| !! | ATCATGAACATTATCAAATA+TGG | - | chr3_4:54867205-54867224 | Msa0507390:intron | 20.0% |
| !! | TCATGAACATTATCAAATAT+GGG | - | chr3_4:54867206-54867225 | Msa0507390:intron | 20.0% |
| !! | TGCTTATTGTAATATGAATT+TGG | - | chr3_4:54867362-54867381 | Msa0507390:intron | 20.0% |
| !! | TTATTGTAATATGAATTTGG+TGG | - | chr3_4:54867365-54867384 | Msa0507390:intron | 20.0% |
| !!! | AAAAGCATAATCTGTTTTTA+CGG | + | chr3_4:54867862-54867881 | None:intergenic | 20.0% |
| !!! | ATTGCTTTTATACTGTCATT+AGG | - | chr3_4:54866392-54866411 | Msa0507390:intron | 25.0% |
| ! | ACTAATAGAATTAACTGAGT+TGG | + | chr3_4:54866434-54866453 | None:intergenic | 25.0% |
| ! | TAACTAATGTTAGATTGTAG+AGG | - | chr3_4:54866575-54866594 | Msa0507390:intron | 25.0% |
| ! | AACTAATGTTAGATTGTAGA+GGG | - | chr3_4:54866576-54866595 | Msa0507390:intron | 25.0% |
| ! | CATAAAATACAGCAATTAGA+TGG | + | chr3_4:54866804-54866823 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTACTTACTAGA+TGG | + | chr3_4:54866926-54866945 | None:intergenic | 25.0% |
| !! | ACATGATAAGACTTTTCAAT+TGG | - | chr3_4:54867097-54867116 | Msa0507390:intron | 25.0% |
| ! | CATGAACATTATCAAATATG+GGG | - | chr3_4:54867207-54867226 | Msa0507390:intron | 25.0% |
| !! | AATTAGTTCAAGTTCTTACT+CGG | - | chr3_4:54867244-54867263 | Msa0507390:intron | 25.0% |
| ! | TCTTTACTGCTTCAAAAAAT+GGG | + | chr3_4:54867592-54867611 | None:intergenic | 25.0% |
| ! | ATCTTTACTGCTTCAAAAAA+TGG | + | chr3_4:54867593-54867612 | None:intergenic | 25.0% |
| !!! | ATGTCTTTTTTATTTTCTGC+TGG | - | chr3_4:54867914-54867933 | Msa0507390:CDS | 25.0% |
| ! | TAATAGTGAGTGAAAAGAAA+TGG | - | chr3_4:54867963-54867982 | Msa0507390:CDS | 25.0% |
| ! | AATAGTGAGTGAAAAGAAAT+GGG | - | chr3_4:54867964-54867983 | Msa0507390:CDS | 25.0% |
| ! | ATTCAAGTCTAAATATGCAA+GGG | + | chr3_4:54868005-54868024 | None:intergenic | 25.0% |
| ! | AATTCAAGTCTAAATATGCA+AGG | + | chr3_4:54868006-54868025 | None:intergenic | 25.0% |
| !! | TAATTTGCAAGTGAGAAAAA+AGG | - | chr3_4:54868065-54868084 | Msa0507390:CDS | 25.0% |
| TATATGTTTACATTGGTCAG+AGG | - | chr3_4:54865689-54865708 | Msa0507390:three_prime_UTR | 30.0% | |
| ATTTCAGATAGAAAACGTGA+TGG | + | chr3_4:54865721-54865740 | None:intergenic | 30.0% | |
| CTCAAAATTCATGTTCAAAG+AGG | - | chr3_4:54865797-54865816 | Msa0507390:three_prime_UTR | 30.0% | |
| TCCTTATGTTGTCATCAAAA+TGG | - | chr3_4:54865856-54865875 | Msa0507390:three_prime_UTR | 30.0% | |
| CCTTATGTTGTCATCAAAAT+GGG | - | chr3_4:54865857-54865876 | Msa0507390:three_prime_UTR | 30.0% | |
| TTCATTTCAACATGCATAGA+TGG | - | chr3_4:54866153-54866172 | Msa0507390:CDS | 30.0% | |
| ACACATTTGATCATAAGTGT+CGG | - | chr3_4:54866334-54866353 | Msa0507390:intron | 30.0% | |
| ATAGTCTGCAATTTATGAGT+GGG | - | chr3_4:54866456-54866475 | Msa0507390:intron | 30.0% | |
| ACTAATGTTAGATTGTAGAG+GGG | - | chr3_4:54866577-54866596 | Msa0507390:intron | 30.0% | |
| AAGTTACTTACTAGATGGAT+TGG | + | chr3_4:54866921-54866940 | None:intergenic | 30.0% | |
| ! | GATATGAAATTTTCTCGCTT+TGG | - | chr3_4:54867013-54867032 | Msa0507390:intron | 30.0% |
| TCTCATATTATCCGTTGTTA+AGG | - | chr3_4:54867271-54867290 | Msa0507390:intron | 30.0% | |
| ! | CGTGTATTTTACCTTAACAA+CGG | + | chr3_4:54867285-54867304 | None:intergenic | 30.0% |
| ! | TGTAATATGAATTTGGTGGA+AGG | - | chr3_4:54867369-54867388 | Msa0507390:intron | 30.0% |
| AATGCAGTTTGTGTATGATA+AGG | - | chr3_4:54867517-54867536 | Msa0507390:intron | 30.0% | |
| !!! | TTTTTGAAGCAGTAAAGATG+CGG | - | chr3_4:54867594-54867613 | Msa0507390:intron | 30.0% |
| TTGTAACTATAGCCTCATTT+GGG | + | chr3_4:54867631-54867650 | None:intergenic | 30.0% | |
| AAATGAGGCTATAGTTACAA+GGG | - | chr3_4:54867631-54867650 | Msa0507390:intron | 30.0% | |
| ! | TGGTCAAATTTTCCAAAACA+TGG | - | chr3_4:54867709-54867728 | Msa0507390:intron | 30.0% |
| ! | TTAGTCTAAGAACCATGTTT+TGG | + | chr3_4:54867724-54867743 | None:intergenic | 30.0% |
| AGACTAAGAAATGTTGAATG+TGG | - | chr3_4:54867737-54867756 | Msa0507390:intron | 30.0% | |
| GACTAAGAAATGTTGAATGT+GGG | - | chr3_4:54867738-54867757 | Msa0507390:intron | 30.0% | |
| ACTAAGAAATGTTGAATGTG+GGG | - | chr3_4:54867739-54867758 | Msa0507390:intron | 30.0% | |
| TTTCACTCACTATTAGTCAT+TGG | + | chr3_4:54867958-54867977 | None:intergenic | 30.0% | |
| TTCAGCTTATGTAATGTACA+AGG | - | chr3_4:54868029-54868048 | Msa0507390:CDS | 30.0% | |
| TCTAACACATTCTGTGTTCA+TGG | - | chr3_4:54865757-54865776 | Msa0507390:three_prime_UTR | 35.0% | |
| TGTGTTCATGGAGAATTTGT+TGG | - | chr3_4:54865769-54865788 | Msa0507390:three_prime_UTR | 35.0% | |
| ! | GTGTTCATGGAGAATTTGTT+GGG | - | chr3_4:54865770-54865789 | Msa0507390:three_prime_UTR | 35.0% |
| !! | CCCATTTTGATGACAACATA+AGG | + | chr3_4:54865860-54865879 | None:intergenic | 35.0% |
| TGTCATCAAAATGGGAAAAC+AGG | - | chr3_4:54865865-54865884 | Msa0507390:three_prime_UTR | 35.0% | |
| GATAGTCTGCAATTTATGAG+TGG | - | chr3_4:54866455-54866474 | Msa0507390:intron | 35.0% | |
| TAGTCTGCAATTTATGAGTG+GGG | - | chr3_4:54866457-54866476 | Msa0507390:intron | 35.0% | |
| ACAATAAGTTGTTCTCCCAT+TGG | - | chr3_4:54866541-54866560 | Msa0507390:intron | 35.0% | |
| CAATAAGTTGTTCTCCCATT+GGG | - | chr3_4:54866542-54866561 | Msa0507390:intron | 35.0% | |
| AATAAGTTGTTCTCCCATTG+GGG | - | chr3_4:54866543-54866562 | Msa0507390:intron | 35.0% | |
| GTTAACACAATAACCCCAAT+GGG | + | chr3_4:54866559-54866578 | None:intergenic | 35.0% | |
| AGTTAACACAATAACCCCAA+TGG | + | chr3_4:54866560-54866579 | None:intergenic | 35.0% | |
| ! | GCACTGATAATTCACATTGA+AGG | + | chr3_4:54866740-54866759 | None:intergenic | 35.0% |
| GTGAATTATCAGTGCTACAT+AGG | - | chr3_4:54866745-54866764 | Msa0507390:intron | 35.0% | |
| AGAAGAATCTAAATCCTGAG+TGG | - | chr3_4:54866856-54866875 | Msa0507390:CDS | 35.0% | |
| GAAGAATCTAAATCCTGAGT+GGG | - | chr3_4:54866857-54866876 | Msa0507390:CDS | 35.0% | |
| ! | GAAATTTTCTCGCTTTGGTT+TGG | - | chr3_4:54867018-54867037 | Msa0507390:intron | 35.0% |
| CTTGTAACTATAGCCTCATT+TGG | + | chr3_4:54867632-54867651 | None:intergenic | 35.0% | |
| CAAATGAGGCTATAGTTACA+AGG | - | chr3_4:54867630-54867649 | Msa0507390:intron | 35.0% | |
| AGTCACATTGTTTGGAAAGA+TGG | - | chr3_4:54867689-54867708 | Msa0507390:intron | 35.0% | |
| AGATAGAAAACGTGATGGCA+GGG | + | chr3_4:54865716-54865735 | None:intergenic | 40.0% | |
| CTATGTTGTGTCAAGTGTCT+GGG | + | chr3_4:54866222-54866241 | None:intergenic | 40.0% | |
| TCTATGTTGTGTCAAGTGTC+TGG | + | chr3_4:54866223-54866242 | None:intergenic | 40.0% | |
| TACATGTGTCAGTATCGTGT+AGG | - | chr3_4:54866697-54866716 | Msa0507390:intron | 40.0% | |
| ACACAGACAAGAGATGCATA+AGG | + | chr3_4:54866777-54866796 | None:intergenic | 40.0% | |
| TGGAGTATGAGGATCTGAAA+TGG | + | chr3_4:54866901-54866920 | None:intergenic | 40.0% | |
| !! | ACTAGATGGATTGGAGTATG+AGG | + | chr3_4:54866912-54866931 | None:intergenic | 40.0% |
| CATACACAAACTGCATTGCA+AGG | + | chr3_4:54867514-54867533 | None:intergenic | 40.0% | |
| TGATAAGGACACATTCAGCT+TGG | - | chr3_4:54867532-54867551 | Msa0507390:intron | 40.0% | |
| ATTCAGCTTGGACGACAAAA+TGG | - | chr3_4:54867544-54867563 | Msa0507390:intron | 40.0% | |
| TTCAGCTTGGACGACAAAAT+GGG | - | chr3_4:54867545-54867564 | Msa0507390:intron | 40.0% | |
| ! | GCTAAGCAATTTTGTCTGCT+AGG | + | chr3_4:54867662-54867681 | None:intergenic | 40.0% |
| CAGAAGAGAGTCACATTGTT+TGG | - | chr3_4:54867681-54867700 | Msa0507390:intron | 40.0% | |
| AAATGTTGAATGTGGGGAAG+TGG | - | chr3_4:54867745-54867764 | Msa0507390:intron | 40.0% | |
| GTTGACATTCCTGGTTCAAA+GGG | - | chr3_4:54867785-54867804 | Msa0507390:intron | 40.0% | |
| GATAGAAAACGTGATGGCAG+GGG | + | chr3_4:54865715-54865734 | None:intergenic | 45.0% | |
| CAGATAGAAAACGTGATGGC+AGG | + | chr3_4:54865717-54865736 | None:intergenic | 45.0% | |
| TGATGCAGAAGCTGAAGACT+AGG | - | chr3_4:54866826-54866845 | Msa0507390:intron | 45.0% | |
| GATGCAGAAGCTGAAGACTA+GGG | - | chr3_4:54866827-54866846 | Msa0507390:intron | 45.0% | |
| TCAGCTTGGACGACAAAATG+GGG | - | chr3_4:54867546-54867565 | Msa0507390:intron | 45.0% | |
| TGAAGCAGTAAAGATGCGGT+TGG | - | chr3_4:54867598-54867617 | Msa0507390:intron | 45.0% | |
| GGTTGACATTCCTGGTTCAA+AGG | - | chr3_4:54867784-54867803 | Msa0507390:intron | 45.0% | |
| !! | TCCTGGTTCAAAGGGTATCT+AGG | - | chr3_4:54867793-54867812 | Msa0507390:intron | 45.0% |
| ACCTAGATACCCTTTGAACC+AGG | + | chr3_4:54867797-54867816 | None:intergenic | 45.0% | |
| !! | CATAAGTGTCGGTGCTACAG+AGG | - | chr3_4:54866345-54866364 | Msa0507390:intron | 50.0% |
| CAAGCTGTCAGCTTCGATGT+CGG | + | chr3_4:54866626-54866645 | None:intergenic | 50.0% | |
| GTGTCAGTATCGTGTAGGTG+CGG | - | chr3_4:54866702-54866721 | Msa0507390:intron | 50.0% | |
| TCTAAATCCTGAGTGGGACG+AGG | - | chr3_4:54866863-54866882 | Msa0507390:CDS | 50.0% | |
| CAGCTTGGACGACAAAATGG+GGG | - | chr3_4:54867547-54867566 | Msa0507390:intron | 50.0% | |
| AAGTGGAACTCCAGTTGCAC+TGG | - | chr3_4:54867762-54867781 | Msa0507390:intron | 50.0% | |
| AGTGGAACTCCAGTTGCACT+GGG | - | chr3_4:54867763-54867782 | Msa0507390:intron | 50.0% | |
| GAATGTCAACCCAGTGCAAC+TGG | + | chr3_4:54867775-54867794 | None:intergenic | 50.0% | |
| ! | TTGCACTGGGTTGACATTCC+TGG | - | chr3_4:54867776-54867795 | Msa0507390:intron | 50.0% |
| GGGGACGCTGAGTTTGACAT+CGG | - | chr3_4:54867566-54867585 | Msa0507390:intron | 55.0% | |
| GCAGTAAAGATGCGGTTGGC+AGG | - | chr3_4:54867602-54867621 | Msa0507390:intron | 55.0% | |
| GTTGGCAGGTCTCCCAAATG+AGG | - | chr3_4:54867616-54867635 | Msa0507390:intron | 55.0% | |
| GTCAAGTCCTCGTCCCACTC+AGG | + | chr3_4:54866873-54866892 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 54865686 | 54868099 | 54865686 | ID=Msa0507390;Name=Msa0507390 |
| chr3_4 | mRNA | 54865686 | 54868099 | 54865686 | ID=Msa0507390-mRNA-1;Parent=Msa0507390;Name=Msa0507390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=6|1|1|1|1|1|3|285|193 |
| chr3_4 | exon | 54865686 | 54866261 | 54865686 | ID=Msa0507390-mRNA-1:exon:12108;Parent=Msa0507390-mRNA-1 |
| chr3_4 | exon | 54866856 | 54866951 | 54866856 | ID=Msa0507390-mRNA-1:exon:12107;Parent=Msa0507390-mRNA-1 |
| chr3_4 | exon | 54867899 | 54868099 | 54867899 | ID=Msa0507390-mRNA-1:exon:12106;Parent=Msa0507390-mRNA-1 |
| chr3_4 | five_prime_UTR | 54868094 | 54868099 | 54868094 | ID=Msa0507390-mRNA-1:five_prime_utr;Parent=Msa0507390-mRNA-1 |
| chr3_4 | CDS | 54867899 | 54868093 | 54867899 | ID=Msa0507390-mRNA-1:cds;Parent=Msa0507390-mRNA-1 |
| chr3_4 | CDS | 54866856 | 54866951 | 54866856 | ID=Msa0507390-mRNA-1:cds;Parent=Msa0507390-mRNA-1 |
| chr3_4 | CDS | 54865971 | 54866261 | 54865971 | ID=Msa0507390-mRNA-1:cds;Parent=Msa0507390-mRNA-1 |
| chr3_4 | three_prime_UTR | 54865686 | 54865970 | 54865686 | ID=Msa0507390-mRNA-1:three_prime_utr;Parent=Msa0507390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
