AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244770 MtrunA17_Chr8g0360251 93.714 175 9 1 1 175 1 173 8.06e-108 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244770 AT3G15190.1 76.991 113 24 1 59 169 75 187 2.51e-56 176

Find 65 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGCCTCCTTAATCTTAA+TGG 0.170350 8_2:-33991627 Msa1244770:three_prime_UTR
CTCACTTTGGTACATATAAA+AGG 0.221922 8_2:+33991811 None:intergenic
ATAGCGGAATCAACCTTCTT+TGG 0.228814 8_2:+33993161 None:intergenic
TCATCATCAAATTCAAATTC+TGG 0.234488 8_2:-33993293 Msa1244770:CDS
AATCTTAATGGCAGTACTTT+TGG 0.260266 8_2:-33991615 Msa1244770:three_prime_UTR
CTCTACTGCCCTCTTTCTTC+TGG 0.276124 8_2:+33991881 None:intergenic
TTGAATTTGATGATGAAGTT+AGG 0.285667 8_2:+33993300 None:intergenic
AAGTACTGCCATTAAGATTA+AGG 0.300171 8_2:+33991619 None:intergenic
CTCTAGACTGGGAAATGTTT+CGG 0.313050 8_2:+33993255 None:intergenic
TCTAGACTGGGAAATGTTTC+GGG 0.313830 8_2:+33993256 None:intergenic
AAATACAGTTAAGGGTAGTA+TGG 0.329261 8_2:-33993492 Msa1244770:five_prime_UTR
TCTCTGTCTTAAATTCAAAT+TGG 0.329349 8_2:-33991741 Msa1244770:three_prime_UTR
TTAGAGTTACGGTACCTTCT+TGG 0.334810 8_2:+33993067 None:intergenic
CTTATCCCTTCAATTTCAAT+TGG 0.340771 8_2:+33993416 None:intergenic
ATGAGGAGATTATGAAATAA+AGG 0.345001 8_2:+33993439 None:intergenic
GACTCAAGAGGGAGTGTTTA+CGG 0.350572 8_2:+33991533 None:intergenic
TGGAAAAGAAATACAGTTAA+GGG 0.367102 8_2:-33993500 None:intergenic
CGCTATTAAGAGAGCTCGTC+AGG 0.368802 8_2:-33993144 Msa1244770:CDS
TTGGAAAAGAAATACAGTTA+AGG 0.384353 8_2:-33993501 None:intergenic
CTTGGTACGGGTTCTAATCT+CGG 0.388971 8_2:+33993085 None:intergenic
GCCTCAATTGAGAAGATGAT+TGG 0.400874 8_2:-33991987 Msa1244770:CDS
TGAATTTGATGATGAAGTTA+GGG 0.409538 8_2:+33993301 None:intergenic
AATACAACAATGACTAATTA+CGG 0.433579 8_2:+33991667 None:intergenic
CCTCATCCAATTGAAATTGA+AGG 0.440955 8_2:-33993422 Msa1244770:five_prime_UTR
CAGACACTGGCTTGAGGCAC+AGG 0.442721 8_2:+33991837 None:intergenic
AGGTATGTTATCTTTGAATA+CGG 0.445037 8_2:-33993222 Msa1244770:CDS
CTTGTGAAAGGACTCTAGAC+TGG 0.483441 8_2:+33993243 None:intergenic
GTTACGGTACCTTCTTGGTA+CGG 0.488702 8_2:+33993072 None:intergenic
TTGCGAGGCTGCTCCAAAGA+AGG 0.502462 8_2:-33993174 Msa1244770:CDS
TCCAATCATCTTCTCAATTG+AGG 0.507360 8_2:+33991986 None:intergenic
TTACGGTACCTTCTTGGTAC+GGG 0.518973 8_2:+33993073 None:intergenic
CCTTCAATTTCAATTGGATG+AGG 0.519784 8_2:+33993422 None:intergenic
GAGATGCTGTAAACATCAAA+GGG 0.521125 8_2:+33991689 None:intergenic
CAGTAGAGATTCATCATGGC+TGG 0.521381 8_2:-33991866 Msa1244770:CDS
CTCATCCAATTGAAATTGAA+GGG 0.535516 8_2:-33993421 Msa1244770:five_prime_UTR
TGTGCGTTAAGTTCTCACTT+TGG 0.540079 8_2:+33991798 None:intergenic
AATCGACAAAGCAGTGAAAG+TGG 0.542695 8_2:-33991949 Msa1244770:CDS
GGAGATGCTGTAAACATCAA+AGG 0.551688 8_2:+33991688 None:intergenic
CTCGGCTTGCCAGAAGAAAG+AGG 0.573656 8_2:-33991890 Msa1244770:CDS
AAGATAACATACCTTGTGAA+AGG 0.576623 8_2:+33993231 None:intergenic
CGGGAGCAAATCGCAAGTCT+CGG 0.578912 8_2:-33991908 Msa1244770:CDS
TTCGTAAATGTGACTCAAGA+GGG 0.579867 8_2:+33991522 None:intergenic
AGACACTGGCTTGAGGCACA+GGG 0.582207 8_2:+33991838 None:intergenic
CAGTCTAGAGTCCTTTCACA+AGG 0.588356 8_2:-33993242 Msa1244770:CDS
ATATAAAAGGATTCAGACAC+TGG 0.591833 8_2:+33991824 None:intergenic
AGAGAGCTCGTCAGGCTGAG+AGG 0.604628 8_2:-33993136 Msa1244770:CDS
GATTAGAACCCGTACCAAGA+AGG 0.607531 8_2:-33993081 Msa1244770:intron
ATCGACAAAGCAGTGAAAGT+GGG 0.608479 8_2:-33991948 Msa1244770:CDS
TCGGCTTGCCAGAAGAAAGA+GGG 0.614940 8_2:-33991889 Msa1244770:CDS
ATTCGTAAATGTGACTCAAG+AGG 0.615486 8_2:+33991521 None:intergenic
ATGGAGATTATCTTACTCGT+CGG 0.621496 8_2:-33993473 Msa1244770:five_prime_UTR
ATCAGAGAAAGAGATCGAGA+TGG 0.625270 8_2:-33993375 Msa1244770:exon
TTGTGAAAGGACTCTAGACT+GGG 0.643097 8_2:+33993244 None:intergenic
TTGAATACGGTGCAGAAGCG+TGG 0.643767 8_2:-33993209 Msa1244770:CDS
GGGAACTTTGCATAGAAACA+CGG 0.644538 8_2:-33991928 Msa1244770:CDS
TGGTGTTGTTGTTGTTTGCG+AGG 0.647337 8_2:-33993189 Msa1244770:CDS
TGTTTACGGCATGACTGATG+TGG 0.653475 8_2:+33991547 None:intergenic
AGGGCAGTAGAGATTCATCA+TGG 0.654489 8_2:-33991870 Msa1244770:CDS
AGGATTCAGACACTGGCTTG+AGG 0.656971 8_2:+33991831 None:intergenic
GGAACTTTGCATAGAAACAC+GGG 0.657374 8_2:-33991927 Msa1244770:CDS
TACTGCCATTAAGATTAAGG+AGG 0.666490 8_2:+33991622 None:intergenic
CTGACGAGCTCTCTTAATAG+CGG 0.668959 8_2:+33993145 None:intergenic
AATTGAGAAGATGATTGGAG+AGG 0.673219 8_2:-33991982 Msa1244770:CDS
GACACTGGCTTGAGGCACAG+GGG 0.714773 8_2:+33991839 None:intergenic
GTTTACGGCATGACTGATGT+GGG 0.715569 8_2:+33991548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTCAAATTATCAT+CGG - chr8_2:33992023-33992042 Msa1244770:CDS 20.0%
!! ATAGAATAGCTATAATAACA+TGG - chr8_2:33992112-33992131 Msa1244770:intron 20.0%
!!! GAAAACATGATTTGTATTTT+AGG - chr8_2:33992288-33992307 Msa1244770:intron 20.0%
!!! TTATATGGGTTAAACATTAT+GGG + chr8_2:33992378-33992397 None:intergenic 20.0%
!! TGATAATATGATAGAGTATA+TGG - chr8_2:33992469-33992488 Msa1244770:intron 20.0%
!! GATAATATGATAGAGTATAT+GGG - chr8_2:33992470-33992489 Msa1244770:intron 20.0%
!! AATACAACAATGACTAATTA+CGG + chr8_2:33993363-33993382 None:intergenic 20.0%
!!! TCATTTTCTCAAATTATCAT+CGG - chr8_2:33992023-33992042 Msa1244770:CDS 20.0%
!! ATAGAATAGCTATAATAACA+TGG - chr8_2:33992112-33992131 Msa1244770:intron 20.0%
!!! GAAAACATGATTTGTATTTT+AGG - chr8_2:33992288-33992307 Msa1244770:intron 20.0%
!!! TTATATGGGTTAAACATTAT+GGG + chr8_2:33992378-33992397 None:intergenic 20.0%
!! TGATAATATGATAGAGTATA+TGG - chr8_2:33992469-33992488 Msa1244770:intron 20.0%
!! GATAATATGATAGAGTATAT+GGG - chr8_2:33992470-33992489 Msa1244770:intron 20.0%
!! AATACAACAATGACTAATTA+CGG + chr8_2:33993363-33993382 None:intergenic 20.0%
! ATGAGGAGATTATGAAATAA+AGG + chr8_2:33991591-33991610 None:intergenic 25.0%
!!! TGAATTTGATGATGAAGTTA+GGG + chr8_2:33991729-33991748 None:intergenic 25.0%
!!! TTGAATTTGATGATGAAGTT+AGG + chr8_2:33991730-33991749 None:intergenic 25.0%
! TCATCATCAAATTCAAATTC+TGG - chr8_2:33991734-33991753 Msa1244770:three_prime_UTR 25.0%
! AGGTATGTTATCTTTGAATA+CGG - chr8_2:33991805-33991824 Msa1244770:three_prime_UTR 25.0%
!! AATAGTTCAAGTTAGAGTTA+CGG + chr8_2:33991974-33991993 None:intergenic 25.0%
!! AAAATTGATTCCATAGCTTT+AGG - chr8_2:33992181-33992200 Msa1244770:intron 25.0%
!! AAATTGATTCCATAGCTTTA+GGG - chr8_2:33992182-33992201 Msa1244770:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG + chr8_2:33992238-33992257 None:intergenic 25.0%
!!! ATGTTTTCAAGATGAAATTG+GGG + chr8_2:33992276-33992295 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG + chr8_2:33992277-33992296 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG + chr8_2:33992278-33992297 None:intergenic 25.0%
!! GTTATATGGGTTAAACATTA+TGG + chr8_2:33992379-33992398 None:intergenic 25.0%
! ATCGATAATATGCAAGAAAA+GGG - chr8_2:33992421-33992440 Msa1244770:intron 25.0%
!!! TTAGTTCTAGTTTCTGATAT+AGG - chr8_2:33992636-33992655 Msa1244770:intron 25.0%
! TGTAAATAAACTACAAGTTG+GGG + chr8_2:33992923-33992942 None:intergenic 25.0%
! CTGTAAATAAACTACAAGTT+GGG + chr8_2:33992924-33992943 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG - chr8_2:33993286-33993305 Msa1244770:CDS 25.0%
! ATGAGGAGATTATGAAATAA+AGG + chr8_2:33991591-33991610 None:intergenic 25.0%
!!! TGAATTTGATGATGAAGTTA+GGG + chr8_2:33991729-33991748 None:intergenic 25.0%
!!! TTGAATTTGATGATGAAGTT+AGG + chr8_2:33991730-33991749 None:intergenic 25.0%
! TCATCATCAAATTCAAATTC+TGG - chr8_2:33991734-33991753 Msa1244770:three_prime_UTR 25.0%
! AGGTATGTTATCTTTGAATA+CGG - chr8_2:33991805-33991824 Msa1244770:three_prime_UTR 25.0%
!! AATAGTTCAAGTTAGAGTTA+CGG + chr8_2:33991974-33991993 None:intergenic 25.0%
!! AAAATTGATTCCATAGCTTT+AGG - chr8_2:33992181-33992200 Msa1244770:intron 25.0%
!! AAATTGATTCCATAGCTTTA+GGG - chr8_2:33992182-33992201 Msa1244770:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG + chr8_2:33992238-33992257 None:intergenic 25.0%
!!! ATGTTTTCAAGATGAAATTG+GGG + chr8_2:33992276-33992295 None:intergenic 25.0%
!!! CATGTTTTCAAGATGAAATT+GGG + chr8_2:33992277-33992296 None:intergenic 25.0%
!!! TCATGTTTTCAAGATGAAAT+TGG + chr8_2:33992278-33992297 None:intergenic 25.0%
!! GTTATATGGGTTAAACATTA+TGG + chr8_2:33992379-33992398 None:intergenic 25.0%
! ATCGATAATATGCAAGAAAA+GGG - chr8_2:33992421-33992440 Msa1244770:intron 25.0%
!!! TTAGTTCTAGTTTCTGATAT+AGG - chr8_2:33992636-33992655 Msa1244770:intron 25.0%
! TGTAAATAAACTACAAGTTG+GGG + chr8_2:33992923-33992942 None:intergenic 25.0%
! CTGTAAATAAACTACAAGTT+GGG + chr8_2:33992924-33992943 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG - chr8_2:33993286-33993305 Msa1244770:CDS 25.0%
AAATACAGTTAAGGGTAGTA+TGG - chr8_2:33991535-33991554 Msa1244770:three_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG - chr8_2:33991606-33991625 Msa1244770:three_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG + chr8_2:33991614-33991633 None:intergenic 30.0%
!! GTAAGATTCCTCATTTTTGA+AGG + chr8_2:33991707-33991726 None:intergenic 30.0%
AAGATAACATACCTTGTGAA+AGG + chr8_2:33991799-33991818 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG + chr8_2:33992105-33992124 None:intergenic 30.0%
!! TGTTTTCAAGATGAAATTGG+GGG + chr8_2:33992275-33992294 None:intergenic 30.0%
AAAACAAAAACACAACTCCT+AGG + chr8_2:33992321-33992340 None:intergenic 30.0%
ATTCTCAAGGCAAGTTATAT+GGG + chr8_2:33992392-33992411 None:intergenic 30.0%
TATTCTCAAGGCAAGTTATA+TGG + chr8_2:33992393-33992412 None:intergenic 30.0%
! CTTTTCTTGCATATTATCGA+TGG + chr8_2:33992422-33992441 None:intergenic 30.0%
CATCGATAATATGCAAGAAA+AGG - chr8_2:33992420-33992439 Msa1244770:intron 30.0%
ATATGATAGAGTATATGGGA+TGG - chr8_2:33992474-33992493 Msa1244770:intron 30.0%
! ACAATCAGAAAATGTTGCTT+CGG + chr8_2:33992526-33992545 None:intergenic 30.0%
TGACAATTCAACAGTTTAGA+AGG - chr8_2:33992598-33992617 Msa1244770:intron 30.0%
CAGAAACTAGAACTAAAACA+TGG + chr8_2:33992632-33992651 None:intergenic 30.0%
CCTGTAAATAAACTACAAGT+TGG + chr8_2:33992925-33992944 None:intergenic 30.0%
CCAACTTGTAGTTTATTTAC+AGG - chr8_2:33992922-33992941 Msa1244770:intron 30.0%
TCTTACTTTCAATTGTCTGT+AGG - chr8_2:33992961-33992980 Msa1244770:intron 30.0%
! TTTCAATTGTCTGTAGGTTT+TGG - chr8_2:33992967-33992986 Msa1244770:intron 30.0%
ATATAAAAGGATTCAGACAC+TGG + chr8_2:33993206-33993225 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG + chr8_2:33993219-33993238 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG + chr8_2:33993411-33993430 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG - chr8_2:33993412-33993431 Msa1244770:five_prime_UTR 30.0%
AAATACAGTTAAGGGTAGTA+TGG - chr8_2:33991535-33991554 Msa1244770:three_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG - chr8_2:33991606-33991625 Msa1244770:three_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG + chr8_2:33991614-33991633 None:intergenic 30.0%
!! GTAAGATTCCTCATTTTTGA+AGG + chr8_2:33991707-33991726 None:intergenic 30.0%
AAGATAACATACCTTGTGAA+AGG + chr8_2:33991799-33991818 None:intergenic 30.0%
ATAGCTATTCTATGAAGAAC+TGG + chr8_2:33992105-33992124 None:intergenic 30.0%
!! TGTTTTCAAGATGAAATTGG+GGG + chr8_2:33992275-33992294 None:intergenic 30.0%
AAAACAAAAACACAACTCCT+AGG + chr8_2:33992321-33992340 None:intergenic 30.0%
ATTCTCAAGGCAAGTTATAT+GGG + chr8_2:33992392-33992411 None:intergenic 30.0%
TATTCTCAAGGCAAGTTATA+TGG + chr8_2:33992393-33992412 None:intergenic 30.0%
! CTTTTCTTGCATATTATCGA+TGG + chr8_2:33992422-33992441 None:intergenic 30.0%
CATCGATAATATGCAAGAAA+AGG - chr8_2:33992420-33992439 Msa1244770:intron 30.0%
ATATGATAGAGTATATGGGA+TGG - chr8_2:33992474-33992493 Msa1244770:intron 30.0%
! ACAATCAGAAAATGTTGCTT+CGG + chr8_2:33992526-33992545 None:intergenic 30.0%
TGACAATTCAACAGTTTAGA+AGG - chr8_2:33992598-33992617 Msa1244770:intron 30.0%
CAGAAACTAGAACTAAAACA+TGG + chr8_2:33992632-33992651 None:intergenic 30.0%
CCTGTAAATAAACTACAAGT+TGG + chr8_2:33992925-33992944 None:intergenic 30.0%
CCAACTTGTAGTTTATTTAC+AGG - chr8_2:33992922-33992941 Msa1244770:intron 30.0%
TCTTACTTTCAATTGTCTGT+AGG - chr8_2:33992961-33992980 Msa1244770:intron 30.0%
! TTTCAATTGTCTGTAGGTTT+TGG - chr8_2:33992967-33992986 Msa1244770:intron 30.0%
ATATAAAAGGATTCAGACAC+TGG + chr8_2:33993206-33993225 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG + chr8_2:33993219-33993238 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG + chr8_2:33993411-33993430 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG - chr8_2:33993412-33993431 Msa1244770:five_prime_UTR 30.0%
ATGGAGATTATCTTACTCGT+CGG - chr8_2:33991554-33991573 Msa1244770:three_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG + chr8_2:33991608-33991627 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG - chr8_2:33991605-33991624 Msa1244770:three_prime_UTR 35.0%
TGAACCTTCCTTCAAAAATG+AGG - chr8_2:33991696-33991715 Msa1244770:three_prime_UTR 35.0%
!! GATTCCTCATTTTTGAAGGA+AGG + chr8_2:33991703-33991722 None:intergenic 35.0%
TCTCAAATTATCATCGGTGT+TGG - chr8_2:33992029-33992048 Msa1244770:CDS 35.0%
CGATGGTCAAAATATTCTCA+AGG + chr8_2:33992405-33992424 None:intergenic 35.0%
AAAAGCAAGCAGTATGTACA+AGG + chr8_2:33992711-33992730 None:intergenic 35.0%
TCAAGGGTTCTTATTGTTTG+TGG + chr8_2:33992801-33992820 None:intergenic 35.0%
GTAGCTGATGTTATAATTGC+AGG - chr8_2:33992825-33992844 Msa1244770:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG + chr8_2:33993044-33993063 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG - chr8_2:33993045-33993064 Msa1244770:intron 35.0%
GAGATGCTGTAAACATCAAA+GGG + chr8_2:33993341-33993360 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG - chr8_2:33993400-33993419 Msa1244770:five_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG + chr8_2:33993408-33993427 None:intergenic 35.0%
ATGGAGATTATCTTACTCGT+CGG - chr8_2:33991554-33991573 Msa1244770:three_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG + chr8_2:33991608-33991627 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG - chr8_2:33991605-33991624 Msa1244770:three_prime_UTR 35.0%
TGAACCTTCCTTCAAAAATG+AGG - chr8_2:33991696-33991715 Msa1244770:three_prime_UTR 35.0%
!! GATTCCTCATTTTTGAAGGA+AGG + chr8_2:33991703-33991722 None:intergenic 35.0%
TCTCAAATTATCATCGGTGT+TGG - chr8_2:33992029-33992048 Msa1244770:CDS 35.0%
CGATGGTCAAAATATTCTCA+AGG + chr8_2:33992405-33992424 None:intergenic 35.0%
AAAAGCAAGCAGTATGTACA+AGG + chr8_2:33992711-33992730 None:intergenic 35.0%
TCAAGGGTTCTTATTGTTTG+TGG + chr8_2:33992801-33992820 None:intergenic 35.0%
GTAGCTGATGTTATAATTGC+AGG - chr8_2:33992825-33992844 Msa1244770:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG + chr8_2:33993044-33993063 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG - chr8_2:33993045-33993064 Msa1244770:intron 35.0%
GAGATGCTGTAAACATCAAA+GGG + chr8_2:33993341-33993360 None:intergenic 35.0%
ACATGCCTCCTTAATCTTAA+TGG - chr8_2:33993400-33993419 Msa1244770:five_prime_UTR 35.0%
TACTGCCATTAAGATTAAGG+AGG + chr8_2:33993408-33993427 None:intergenic 35.0%
ATCAGAGAAAGAGATCGAGA+TGG - chr8_2:33991652-33991671 Msa1244770:three_prime_UTR 40.0%
TCTAGACTGGGAAATGTTTC+GGG + chr8_2:33991774-33991793 None:intergenic 40.0%
CTCTAGACTGGGAAATGTTT+CGG + chr8_2:33991775-33991794 None:intergenic 40.0%
TTGTGAAAGGACTCTAGACT+GGG + chr8_2:33991786-33991805 None:intergenic 40.0%
! ATAGCGGAATCAACCTTCTT+TGG + chr8_2:33991869-33991888 None:intergenic 40.0%
TTAGAGTTACGGTACCTTCT+TGG + chr8_2:33991963-33991982 None:intergenic 40.0%
!! TCCATAGCTTTAGGGATTAG+AGG - chr8_2:33992190-33992209 Msa1244770:intron 40.0%
!! CCATAGCTTTAGGGATTAGA+GGG - chr8_2:33992191-33992210 Msa1244770:intron 40.0%
AGAGGGAAGTTTGAGTAACA+TGG - chr8_2:33992208-33992227 Msa1244770:intron 40.0%
!! GTATTTTAGGTGTCAGACCT+AGG - chr8_2:33992301-33992320 Msa1244770:intron 40.0%
TGATAGAGTATATGGGATGG+TGG - chr8_2:33992477-33992496 Msa1244770:intron 40.0%
GATAGAGTATATGGGATGGT+GGG - chr8_2:33992478-33992497 Msa1244770:intron 40.0%
!! TGTTTCAAGTTACTGAACCC+TGG - chr8_2:33992543-33992562 Msa1244770:intron 40.0%
!! GTTTCAAGTTACTGAACCCT+GGG - chr8_2:33992544-33992563 Msa1244770:intron 40.0%
!! TTTCAAGTTACTGAACCCTG+GGG - chr8_2:33992545-33992564 Msa1244770:intron 40.0%
AACAATAAGAACCCTTGACG+TGG - chr8_2:33992803-33992822 Msa1244770:intron 40.0%
GCCTCAATTGAGAAGATGAT+TGG - chr8_2:33993040-33993059 Msa1244770:intron 40.0%
AATCGACAAAGCAGTGAAAG+TGG - chr8_2:33993078-33993097 Msa1244770:intron 40.0%
ATCGACAAAGCAGTGAAAGT+GGG - chr8_2:33993079-33993098 Msa1244770:intron 40.0%
GGGAACTTTGCATAGAAACA+CGG - chr8_2:33993099-33993118 Msa1244770:CDS 40.0%
GGAACTTTGCATAGAAACAC+GGG - chr8_2:33993100-33993119 Msa1244770:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG + chr8_2:33993232-33993251 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG + chr8_2:33993342-33993361 None:intergenic 40.0%
ATCAGAGAAAGAGATCGAGA+TGG - chr8_2:33991652-33991671 Msa1244770:three_prime_UTR 40.0%
TCTAGACTGGGAAATGTTTC+GGG + chr8_2:33991774-33991793 None:intergenic 40.0%
CTCTAGACTGGGAAATGTTT+CGG + chr8_2:33991775-33991794 None:intergenic 40.0%
TTGTGAAAGGACTCTAGACT+GGG + chr8_2:33991786-33991805 None:intergenic 40.0%
! ATAGCGGAATCAACCTTCTT+TGG + chr8_2:33991869-33991888 None:intergenic 40.0%
TTAGAGTTACGGTACCTTCT+TGG + chr8_2:33991963-33991982 None:intergenic 40.0%
!! TCCATAGCTTTAGGGATTAG+AGG - chr8_2:33992190-33992209 Msa1244770:intron 40.0%
!! CCATAGCTTTAGGGATTAGA+GGG - chr8_2:33992191-33992210 Msa1244770:intron 40.0%
AGAGGGAAGTTTGAGTAACA+TGG - chr8_2:33992208-33992227 Msa1244770:intron 40.0%
!! GTATTTTAGGTGTCAGACCT+AGG - chr8_2:33992301-33992320 Msa1244770:intron 40.0%
TGATAGAGTATATGGGATGG+TGG - chr8_2:33992477-33992496 Msa1244770:intron 40.0%
GATAGAGTATATGGGATGGT+GGG - chr8_2:33992478-33992497 Msa1244770:intron 40.0%
!! TGTTTCAAGTTACTGAACCC+TGG - chr8_2:33992543-33992562 Msa1244770:intron 40.0%
!! GTTTCAAGTTACTGAACCCT+GGG - chr8_2:33992544-33992563 Msa1244770:intron 40.0%
!! TTTCAAGTTACTGAACCCTG+GGG - chr8_2:33992545-33992564 Msa1244770:intron 40.0%
AACAATAAGAACCCTTGACG+TGG - chr8_2:33992803-33992822 Msa1244770:intron 40.0%
GCCTCAATTGAGAAGATGAT+TGG - chr8_2:33993040-33993059 Msa1244770:intron 40.0%
AATCGACAAAGCAGTGAAAG+TGG - chr8_2:33993078-33993097 Msa1244770:intron 40.0%
ATCGACAAAGCAGTGAAAGT+GGG - chr8_2:33993079-33993098 Msa1244770:intron 40.0%
GGGAACTTTGCATAGAAACA+CGG - chr8_2:33993099-33993118 Msa1244770:CDS 40.0%
GGAACTTTGCATAGAAACAC+GGG - chr8_2:33993100-33993119 Msa1244770:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG + chr8_2:33993232-33993251 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG + chr8_2:33993342-33993361 None:intergenic 40.0%
CTTGTGAAAGGACTCTAGAC+TGG + chr8_2:33991787-33991806 None:intergenic 45.0%
! CAGTCTAGAGTCCTTTCACA+AGG - chr8_2:33991785-33991804 Msa1244770:three_prime_UTR 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG - chr8_2:33991838-33991857 Msa1244770:CDS 45.0%
CTGACGAGCTCTCTTAATAG+CGG + chr8_2:33991885-33991904 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG + chr8_2:33991945-33991964 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG - chr8_2:33991946-33991965 Msa1244770:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG + chr8_2:33991957-33991976 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG + chr8_2:33991958-33991977 None:intergenic 45.0%
!! TATCATCGGTGTTGGCATGT+TGG - chr8_2:33992037-33992056 Msa1244770:CDS 45.0%
CCCTCTAATCCCTAAAGCTA+TGG + chr8_2:33992194-33992213 None:intergenic 45.0%
ATGAAATTGGGGGACGACAA+TGG + chr8_2:33992265-33992284 None:intergenic 45.0%
! TTCAAGTTACTGAACCCTGG+GGG - chr8_2:33992546-33992565 Msa1244770:intron 45.0%
AACATCAGCTACCACGTCAA+GGG + chr8_2:33992817-33992836 None:intergenic 45.0%
TAACATCAGCTACCACGTCA+AGG + chr8_2:33992818-33992837 None:intergenic 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG - chr8_2:33992976-33992995 Msa1244770:intron 45.0%
AGGGCAGTAGAGATTCATCA+TGG - chr8_2:33993157-33993176 Msa1244770:CDS 45.0%
CAGTAGAGATTCATCATGGC+TGG - chr8_2:33993161-33993180 Msa1244770:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG + chr8_2:33993482-33993501 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG + chr8_2:33993483-33993502 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG + chr8_2:33993497-33993516 None:intergenic 45.0%
CTTGTGAAAGGACTCTAGAC+TGG + chr8_2:33991787-33991806 None:intergenic 45.0%
! CAGTCTAGAGTCCTTTCACA+AGG - chr8_2:33991785-33991804 Msa1244770:three_prime_UTR 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG - chr8_2:33991838-33991857 Msa1244770:CDS 45.0%
CTGACGAGCTCTCTTAATAG+CGG + chr8_2:33991885-33991904 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG + chr8_2:33991945-33991964 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG - chr8_2:33991946-33991965 Msa1244770:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG + chr8_2:33991957-33991976 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG + chr8_2:33991958-33991977 None:intergenic 45.0%
!! TATCATCGGTGTTGGCATGT+TGG - chr8_2:33992037-33992056 Msa1244770:CDS 45.0%
CCCTCTAATCCCTAAAGCTA+TGG + chr8_2:33992194-33992213 None:intergenic 45.0%
ATGAAATTGGGGGACGACAA+TGG + chr8_2:33992265-33992284 None:intergenic 45.0%
! TTCAAGTTACTGAACCCTGG+GGG - chr8_2:33992546-33992565 Msa1244770:intron 45.0%
AACATCAGCTACCACGTCAA+GGG + chr8_2:33992817-33992836 None:intergenic 45.0%
TAACATCAGCTACCACGTCA+AGG + chr8_2:33992818-33992837 None:intergenic 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG - chr8_2:33992976-33992995 Msa1244770:intron 45.0%
AGGGCAGTAGAGATTCATCA+TGG - chr8_2:33993157-33993176 Msa1244770:CDS 45.0%
CAGTAGAGATTCATCATGGC+TGG - chr8_2:33993161-33993180 Msa1244770:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG + chr8_2:33993482-33993501 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG + chr8_2:33993483-33993502 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG + chr8_2:33993497-33993516 None:intergenic 45.0%
TTGAATACGGTGCAGAAGCG+TGG - chr8_2:33991818-33991837 Msa1244770:exon 50.0%
CGCTATTAAGAGAGCTCGTC+AGG - chr8_2:33991883-33991902 Msa1244770:CDS 50.0%
!! GTTGGCATGTTGGTGTTGGT+TGG - chr8_2:33992047-33992066 Msa1244770:CDS 50.0%
ACTGGCACAAACACAGACAC+CGG + chr8_2:33992087-33992106 None:intergenic 50.0%
!! TGGGATGGTGGGAGAGAAAA+TGG - chr8_2:33992489-33992508 Msa1244770:intron 50.0%
! TCGGCTTGCCAGAAGAAAGA+GGG - chr8_2:33993138-33993157 Msa1244770:CDS 50.0%
CTCTACTGCCCTCTTTCTTC+TGG + chr8_2:33993149-33993168 None:intergenic 50.0%
!! AGGATTCAGACACTGGCTTG+AGG + chr8_2:33993199-33993218 None:intergenic 50.0%
TTGAATACGGTGCAGAAGCG+TGG - chr8_2:33991818-33991837 Msa1244770:exon 50.0%
CGCTATTAAGAGAGCTCGTC+AGG - chr8_2:33991883-33991902 Msa1244770:CDS 50.0%
!! GTTGGCATGTTGGTGTTGGT+TGG - chr8_2:33992047-33992066 Msa1244770:CDS 50.0%
ACTGGCACAAACACAGACAC+CGG + chr8_2:33992087-33992106 None:intergenic 50.0%
!! TGGGATGGTGGGAGAGAAAA+TGG - chr8_2:33992489-33992508 Msa1244770:intron 50.0%
! TCGGCTTGCCAGAAGAAAGA+GGG - chr8_2:33993138-33993157 Msa1244770:CDS 50.0%
CTCTACTGCCCTCTTTCTTC+TGG + chr8_2:33993149-33993168 None:intergenic 50.0%
!! AGGATTCAGACACTGGCTTG+AGG + chr8_2:33993199-33993218 None:intergenic 50.0%
TTGCGAGGCTGCTCCAAAGA+AGG - chr8_2:33991853-33991872 Msa1244770:CDS 55.0%
!! CGGTGTTGGCATGTTGGTGT+TGG - chr8_2:33992043-33992062 Msa1244770:CDS 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG - chr8_2:33992065-33992084 Msa1244770:intron 55.0%
ACAGACACCGGACACAACAC+TGG + chr8_2:33992075-33992094 None:intergenic 55.0%
GGGCGCAAATTAGGTGGTAC+TGG - chr8_2:33992566-33992585 Msa1244770:intron 55.0%
CGGGAGCAAATCGCAAGTCT+CGG - chr8_2:33993119-33993138 Msa1244770:CDS 55.0%
! CTCGGCTTGCCAGAAGAAAG+AGG - chr8_2:33993137-33993156 Msa1244770:CDS 55.0%
!! AGACACTGGCTTGAGGCACA+GGG + chr8_2:33993192-33993211 None:intergenic 55.0%
TTGCGAGGCTGCTCCAAAGA+AGG - chr8_2:33991853-33991872 Msa1244770:CDS 55.0%
!! CGGTGTTGGCATGTTGGTGT+TGG - chr8_2:33992043-33992062 Msa1244770:CDS 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG - chr8_2:33992065-33992084 Msa1244770:intron 55.0%
ACAGACACCGGACACAACAC+TGG + chr8_2:33992075-33992094 None:intergenic 55.0%
GGGCGCAAATTAGGTGGTAC+TGG - chr8_2:33992566-33992585 Msa1244770:intron 55.0%
CGGGAGCAAATCGCAAGTCT+CGG - chr8_2:33993119-33993138 Msa1244770:CDS 55.0%
! CTCGGCTTGCCAGAAGAAAG+AGG - chr8_2:33993137-33993156 Msa1244770:CDS 55.0%
!! AGACACTGGCTTGAGGCACA+GGG + chr8_2:33993192-33993211 None:intergenic 55.0%
AGAGAGCTCGTCAGGCTGAG+AGG - chr8_2:33991891-33991910 Msa1244770:CDS 60.0%
! GAACCCTGGGGGCGCAAATT+AGG - chr8_2:33992557-33992576 Msa1244770:intron 60.0%
! CCACCTAATTTGCGCCCCCA+GGG + chr8_2:33992563-33992582 None:intergenic 60.0%
! ACCACCTAATTTGCGCCCCC+AGG + chr8_2:33992564-33992583 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG + chr8_2:33993191-33993210 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG + chr8_2:33993193-33993212 None:intergenic 60.0%
AGAGAGCTCGTCAGGCTGAG+AGG - chr8_2:33991891-33991910 Msa1244770:CDS 60.0%
! GAACCCTGGGGGCGCAAATT+AGG - chr8_2:33992557-33992576 Msa1244770:intron 60.0%
! CCACCTAATTTGCGCCCCCA+GGG + chr8_2:33992563-33992582 None:intergenic 60.0%
! ACCACCTAATTTGCGCCCCC+AGG + chr8_2:33992564-33992583 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG + chr8_2:33993191-33993210 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG + chr8_2:33993193-33993212 None:intergenic 60.0%
! CCCTGGGGGCGCAAATTAGG+TGG - chr8_2:33992560-33992579 Msa1244770:intron 65.0%
! CCCTGGGGGCGCAAATTAGG+TGG - chr8_2:33992560-33992579 Msa1244770:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 33991532 33993517 33991532 ID=Msa1244770;Name=Msa1244770
chr8_2 mRNA 33991532 33993517 33991532 ID=Msa1244770-mRNA-1;Parent=Msa1244770;Name=Msa1244770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|2|304|175
chr8_2 exon 33991532 33992066 33991532 ID=Msa1244770-mRNA-1:exon:10876;Parent=Msa1244770-mRNA-1
chr8_2 exon 33993082 33993517 33993082 ID=Msa1244770-mRNA-1:exon:10875;Parent=Msa1244770-mRNA-1
chr8_2 five_prime_UTR 33993379 33993517 33993379 ID=Msa1244770-mRNA-1:five_prime_utr;Parent=Msa1244770-mRNA-1
chr8_2 CDS 33993082 33993378 33993082 ID=Msa1244770-mRNA-1:cds;Parent=Msa1244770-mRNA-1
chr8_2 CDS 33991836 33992066 33991836 ID=Msa1244770-mRNA-1:cds;Parent=Msa1244770-mRNA-1
chr8_2 three_prime_UTR 33991532 33991835 33991532 ID=Msa1244770-mRNA-1:three_prime_utr;Parent=Msa1244770-mRNA-1
Gene Sequence

>Msa1244770

ATGGCTTCAGTTTCATGTTCATTGTTGAACCTTCCTTCAAAAATGAGGAATCTTACCCTAACTTCATCATCAAATTCAAATTCTGGTTCTCTAAGTTTCTCCCGAAACATTTCCCAGTCTAGAGTCCTTTCACAAGGTATGTTATCTTTGAATACGGTGCAGAAGCGTGGTGTTGTTGTTGTTTGCGAGGCTGCTCCAAAGAAGGTTGATTCCGCTATTAAGAGAGCTCGTCAGGCTGAGAGGCGTCGCGTTTACAACAAAGCTCGTAAATCCGAGATTAGAACCCGTACCAAGAAGGTTTTGGAAGCACTGGAGTTGCTTAAAAAGAAATCTGATGCACAAGCAGAAGAAATTGCCTCAATTGAGAAGATGATTGGAGAGGCATACTCTATAATCGACAAAGCAGTGAAAGTGGGAACTTTGCATAGAAACACGGGAGCAAATCGCAAGTCTCGGCTTGCCAGAAGAAAGAGGGCAGTAGAGATTCATCATGGCTGGTATGCCCCTGTGCCTCAAGCCAGTGTCTGA

Protein sequence

>Msa1244770

MASVSCSLLNLPSKMRNLTLTSSSNSNSGSLSFSRNISQSRVLSQGMLSLNTVQKRGVVVVCEAAPKKVDSAIKRARQAERRRVYNKARKSEIRTRTKKVLEALELLKKKSDAQAEEIASIEKMIGEAYSIIDKAVKVGTLHRNTGANRKSRLARRKRAVEIHHGWYAPVPQASV*