Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507380 | XP_013460633.1 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 4.84e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507380 | sp|Q9LVH4|CAR4_ARATH | 65.476 | 168 | 58 | 0 | 26 | 193 | 10 | 177 | 2.98e-83 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507380 | B7FGT4 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 2.31e-114 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0507380 | Msa0507390 | 0.990084 | 5.496425e-181 | -8.615850e-47 |
| Msa0507380 | Msa0858250 | -0.802269 | 6.077262e-49 | -8.615850e-47 |
| Msa0507380 | Msa1244770 | -0.816548 | 5.226428e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507380 | MtrunA17_Chr3g0111361 | 97.546 | 163 | 4 | 0 | 29 | 191 | 1 | 163 | 4.45e-118 | 332 |
| Msa0507380 | MtrunA17_Chr2g0280981 | 82.209 | 163 | 29 | 0 | 31 | 193 | 2 | 164 | 3.48e-101 | 289 |
| Msa0507380 | MtrunA17_Chr8g0393081 | 66.867 | 166 | 55 | 0 | 28 | 193 | 16 | 181 | 2.00e-85 | 249 |
| Msa0507380 | MtrunA17_Chr6g0478401 | 65.663 | 166 | 57 | 0 | 28 | 193 | 12 | 177 | 1.64e-80 | 237 |
| Msa0507380 | MtrunA17_Chr1g0160811 | 61.585 | 164 | 62 | 1 | 31 | 193 | 4 | 167 | 1.19e-73 | 219 |
| Msa0507380 | MtrunA17_Chr4g0043861 | 53.659 | 164 | 76 | 0 | 29 | 192 | 1 | 164 | 2.15e-63 | 193 |
| Msa0507380 | MtrunA17_Chr8g0352751 | 46.203 | 158 | 84 | 1 | 29 | 185 | 1 | 158 | 8.43e-44 | 143 |
| Msa0507380 | MtrunA17_Chr8g0380381 | 42.500 | 160 | 91 | 1 | 29 | 187 | 85 | 244 | 6.63e-41 | 139 |
| Msa0507380 | MtrunA17_Chr2g0290631 | 43.312 | 157 | 87 | 1 | 29 | 183 | 1 | 157 | 5.04e-39 | 131 |
| Msa0507380 | MtrunA17_Chr2g0292461 | 41.071 | 168 | 95 | 2 | 24 | 187 | 160 | 327 | 1.80e-38 | 134 |
| Msa0507380 | MtrunA17_Chr3g0083541 | 44.444 | 162 | 81 | 2 | 29 | 185 | 239 | 396 | 6.55e-38 | 134 |
| Msa0507380 | MtrunA17_Chr2g0290721 | 39.744 | 78 | 46 | 1 | 36 | 112 | 3 | 80 | 7.31e-12 | 63.5 |
| Msa0507380 | MtrunA17_Chr1g0156811 | 35.238 | 105 | 63 | 3 | 13 | 112 | 239 | 343 | 2.14e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0507380 | AT3G17980.1 | 65.476 | 168 | 58 | 0 | 26 | 193 | 10 | 177 | 3.03e-84 | 247 |
| Msa0507380 | AT5G37740.1 | 66.071 | 168 | 54 | 1 | 29 | 193 | 1 | 168 | 9.00e-81 | 238 |
| Msa0507380 | AT1G48590.4 | 66.867 | 166 | 54 | 1 | 28 | 193 | 5 | 169 | 1.15e-80 | 237 |
| Msa0507380 | AT1G48590.1 | 66.867 | 166 | 54 | 1 | 28 | 193 | 5 | 169 | 1.15e-80 | 237 |
| Msa0507380 | AT1G48590.2 | 66.867 | 166 | 54 | 1 | 28 | 193 | 36 | 200 | 1.63e-80 | 238 |
| Msa0507380 | AT1G73580.1 | 61.446 | 166 | 64 | 0 | 28 | 193 | 3 | 168 | 2.94e-78 | 231 |
| Msa0507380 | AT1G66360.1 | 63.415 | 164 | 58 | 1 | 29 | 190 | 1 | 164 | 2.39e-77 | 229 |
| Msa0507380 | AT5G37740.2 | 62.360 | 178 | 54 | 2 | 29 | 193 | 1 | 178 | 3.11e-77 | 229 |
| Msa0507380 | AT1G70810.1 | 63.030 | 165 | 61 | 0 | 29 | 193 | 1 | 165 | 1.29e-74 | 222 |
| Msa0507380 | AT1G70790.3 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507380 | AT1G70790.2 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507380 | AT1G70790.1 | 61.350 | 163 | 61 | 1 | 33 | 193 | 6 | 168 | 1.87e-70 | 212 |
| Msa0507380 | AT2G01540.1 | 58.896 | 163 | 65 | 1 | 33 | 193 | 6 | 168 | 6.49e-67 | 203 |
| Msa0507380 | AT1G23140.1 | 56.442 | 163 | 71 | 0 | 29 | 191 | 1 | 163 | 4.48e-65 | 197 |
| Msa0507380 | AT1G70800.1 | 54.438 | 169 | 77 | 0 | 25 | 193 | 6 | 174 | 4.82e-65 | 198 |
| Msa0507380 | AT1G48590.3 | 53.614 | 166 | 44 | 2 | 28 | 193 | 36 | 168 | 3.34e-56 | 175 |
| Msa0507380 | AT1G70790.4 | 60.769 | 130 | 49 | 1 | 66 | 193 | 2 | 131 | 5.41e-52 | 164 |
| Msa0507380 | AT3G07940.1 | 46.154 | 156 | 83 | 1 | 29 | 183 | 224 | 379 | 7.22e-42 | 145 |
| Msa0507380 | AT4G05330.2 | 38.579 | 197 | 108 | 3 | 2 | 185 | 101 | 297 | 1.92e-40 | 139 |
| Msa0507380 | AT5G47710.1 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507380 | AT5G47710.2 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507380 | AT5G47710.3 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507380 | AT5G47710.4 | 40.854 | 164 | 95 | 1 | 29 | 190 | 1 | 164 | 3.20e-40 | 134 |
| Msa0507380 | AT4G05330.3 | 38.579 | 197 | 108 | 3 | 2 | 185 | 136 | 332 | 5.74e-40 | 139 |
| Msa0507380 | AT4G05330.1 | 38.579 | 197 | 108 | 3 | 2 | 185 | 136 | 332 | 5.74e-40 | 139 |
| Msa0507380 | AT4G21160.2 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507380 | AT4G21160.3 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507380 | AT4G21160.1 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507380 | AT4G21160.4 | 43.038 | 158 | 89 | 1 | 29 | 185 | 176 | 333 | 2.84e-38 | 134 |
| Msa0507380 | AT1G03370.1 | 36.458 | 96 | 60 | 1 | 36 | 130 | 3 | 98 | 5.50e-13 | 67.0 |
| Msa0507380 | AT1G03370.2 | 36.458 | 96 | 60 | 1 | 36 | 130 | 3 | 98 | 5.55e-13 | 67.0 |
Find 57 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGCTTGGACGACAAAA+TGG | 0.224120 | 3_4:+54858142 | Msa0507380:CDS |
| TTGCACTGGGTTGACATTCC+TGG | 0.251961 | 3_4:+54858374 | Msa0507380:CDS |
| TCCTTATGTTGTCATCAAAA+TGG | 0.255133 | 3_4:+54856454 | Msa0507380:CDS |
| CAGAAGAGAGTCACATTGTT+TGG | 0.286449 | 3_4:+54858279 | Msa0507380:CDS |
| CTTGTAACTATAGCCTCATT+TGG | 0.292906 | 3_4:-54858227 | None:intergenic |
| TCTAACACATTCTGTGTTCA+TGG | 0.302665 | 3_4:+54856355 | Msa0507380:CDS |
| TTAGTCTAAGAACCATGTTT+TGG | 0.329440 | 3_4:-54858319 | None:intergenic |
| TAATAGTGAGTGAAAAGAAA+TGG | 0.368459 | 3_4:+54858561 | Msa0507380:three_prime_UTR |
| TCCTGGTTCAAAGGGTATCT+AGG | 0.382188 | 3_4:+54858391 | Msa0507380:CDS |
| TTTCACTCACTATTAGTCAT+TGG | 0.388349 | 3_4:-54858553 | None:intergenic |
| GAATGTCAACCCAGTGCAAC+TGG | 0.390071 | 3_4:-54858370 | None:intergenic |
| AGTCACATTGTTTGGAAAGA+TGG | 0.401327 | 3_4:+54858287 | Msa0507380:CDS |
| TGTCATCAAAATGGGAAAAC+AGG | 0.408531 | 3_4:+54856463 | Msa0507380:CDS |
| CCTTATGTTGTCATCAAAAT+GGG | 0.422679 | 3_4:+54856455 | Msa0507380:CDS |
| AATAGTGAGTGAAAAGAAAT+GGG | 0.432071 | 3_4:+54858562 | Msa0507380:three_prime_UTR |
| GTGTTCATGGAGAATTTGTT+GGG | 0.441085 | 3_4:+54856368 | Msa0507380:CDS |
| TTCAGCTTGGACGACAAAAT+GGG | 0.451366 | 3_4:+54858143 | Msa0507380:CDS |
| TGGAGTATGAGGATCTGAAA+TGG | 0.452578 | 3_4:-54857496 | None:intergenic |
| AAGTGGAACTCCAGTTGCAC+TGG | 0.453056 | 3_4:+54858360 | Msa0507380:CDS |
| CAGATAGAAAACGTGATGGC+AGG | 0.458744 | 3_4:-54856312 | None:intergenic |
| TTGTAACTATAGCCTCATTT+GGG | 0.463736 | 3_4:-54858226 | None:intergenic |
| GGTTGACATTCCTGGTTCAA+AGG | 0.472769 | 3_4:+54858382 | Msa0507380:CDS |
| TGTGTTCATGGAGAATTTGT+TGG | 0.478285 | 3_4:+54856367 | Msa0507380:CDS |
| CTCAAAATTCATGTTCAAAG+AGG | 0.479689 | 3_4:+54856395 | Msa0507380:CDS |
| GCAGTAAAGATGCGGTTGGC+AGG | 0.486595 | 3_4:+54858200 | Msa0507380:CDS |
| AAGTTACTTACTAGATGGAT+TGG | 0.500412 | 3_4:-54857516 | None:intergenic |
| GACTAAGAAATGTTGAATGT+GGG | 0.501409 | 3_4:+54858336 | Msa0507380:CDS |
| GTTGACATTCCTGGTTCAAA+GGG | 0.509321 | 3_4:+54858383 | Msa0507380:CDS |
| ACTAGATGGATTGGAGTATG+AGG | 0.510431 | 3_4:-54857507 | None:intergenic |
| TGATGCAGAAGCTGAAGACT+AGG | 0.517179 | 3_4:+54857424 | Msa0507380:intron |
| AAATGTTGAATGTGGGGAAG+TGG | 0.522688 | 3_4:+54858343 | Msa0507380:CDS |
| CAAATGAGGCTATAGTTACA+AGG | 0.526356 | 3_4:+54858228 | Msa0507380:CDS |
| AGACTAAGAAATGTTGAATG+TGG | 0.533532 | 3_4:+54858335 | Msa0507380:CDS |
| AATGCAGTTTGTGTATGATA+AGG | 0.538833 | 3_4:+54858115 | Msa0507380:intron |
| AGATAGAAAACGTGATGGCA+GGG | 0.558943 | 3_4:-54856311 | None:intergenic |
| GTCAAGTCCTCGTCCCACTC+AGG | 0.564180 | 3_4:-54857468 | None:intergenic |
| ACCTAGATACCCTTTGAACC+AGG | 0.570746 | 3_4:-54858392 | None:intergenic |
| AATTCAAGTCTAAATATGCA+AGG | 0.571659 | 3_4:-54858601 | None:intergenic |
| TGATAAGGACACATTCAGCT+TGG | 0.578342 | 3_4:+54858130 | Msa0507380:CDS |
| TCTAAATCCTGAGTGGGACG+AGG | 0.583435 | 3_4:+54857461 | Msa0507380:CDS |
| TGAAGCAGTAAAGATGCGGT+TGG | 0.586646 | 3_4:+54858196 | Msa0507380:CDS |
| GTTGGCAGGTCTCCCAAATG+AGG | 0.587204 | 3_4:+54858214 | Msa0507380:CDS |
| GATAGAAAACGTGATGGCAG+GGG | 0.587431 | 3_4:-54856310 | None:intergenic |
| TCAGCTTGGACGACAAAATG+GGG | 0.593533 | 3_4:+54858144 | Msa0507380:CDS |
| GAAGAATCTAAATCCTGAGT+GGG | 0.594479 | 3_4:+54857455 | Msa0507380:CDS |
| AGTGGAACTCCAGTTGCACT+GGG | 0.596489 | 3_4:+54858361 | Msa0507380:CDS |
| ACTAAGAAATGTTGAATGTG+GGG | 0.600301 | 3_4:+54858337 | Msa0507380:CDS |
| GTATAAGTATATGTTTACAT+TGG | 0.606188 | 3_4:+54856280 | None:intergenic |
| ATTCAAGTCTAAATATGCAA+GGG | 0.608988 | 3_4:-54858600 | None:intergenic |
| GATGCAGAAGCTGAAGACTA+GGG | 0.620713 | 3_4:+54857425 | Msa0507380:intron |
| TATATGTTTACATTGGTCAG+AGG | 0.621459 | 3_4:+54856287 | Msa0507380:exon |
| TTCAGCTTATGTAATGTACA+AGG | 0.624532 | 3_4:+54858627 | Msa0507380:three_prime_UTR |
| ATTTCAGATAGAAAACGTGA+TGG | 0.647910 | 3_4:-54856316 | None:intergenic |
| AAATGAGGCTATAGTTACAA+GGG | 0.662654 | 3_4:+54858229 | Msa0507380:CDS |
| AGAAGAATCTAAATCCTGAG+TGG | 0.665518 | 3_4:+54857454 | Msa0507380:CDS |
| GGGGACGCTGAGTTTGACAT+CGG | 0.670252 | 3_4:+54858164 | Msa0507380:CDS |
| CAGCTTGGACGACAAAATGG+GGG | 0.704105 | 3_4:+54858145 | Msa0507380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATAAATGAAAAATTT+AGG | + | chr3_4:54857579-54857598 | Msa0507380:intron | 10.0% |
| !! | AAAAGATAAATGAAAAATTT+AGG | + | chr3_4:54857579-54857598 | Msa0507380:intron | 10.0% |
| !!! | TCATTTTGTCAAATTATTAT+TGG | - | chr3_4:54856846-54856865 | None:intergenic | 15.0% |
| !!! | CGAAAATAAGTTATATTTTA+GGG | + | chr3_4:54857778-54857797 | Msa0507380:intron | 15.0% |
| !! | ACTATCTGAATATTAAAAAA+TGG | + | chr3_4:54858055-54858074 | Msa0507380:intron | 15.0% |
| !!! | TCATTTTGTCAAATTATTAT+TGG | - | chr3_4:54856846-54856865 | None:intergenic | 15.0% |
| !!! | CGAAAATAAGTTATATTTTA+GGG | + | chr3_4:54857778-54857797 | Msa0507380:intron | 15.0% |
| !! | ACTATCTGAATATTAAAAAA+TGG | + | chr3_4:54858055-54858074 | Msa0507380:intron | 15.0% |
| !!! | GATCTTTTTGTTAATCAATT+AGG | + | chr3_4:54856507-54856526 | Msa0507380:intron | 20.0% |
| !! | AATCACAGCTATATATTATA+TGG | + | chr3_4:54857095-54857114 | Msa0507380:intron | 20.0% |
| !!! | CTATTTTCTCAAATTACTAA+CGG | - | chr3_4:54857258-54857277 | None:intergenic | 20.0% |
| !!! | TGTGTTTCAAATCAAAATTT+TGG | + | chr3_4:54857553-54857572 | Msa0507380:intron | 20.0% |
| !!! | TATAACTTATTTTCGCTATA+AGG | - | chr3_4:54857773-54857792 | None:intergenic | 20.0% |
| !!! | GCGAAAATAAGTTATATTTT+AGG | + | chr3_4:54857777-54857796 | Msa0507380:intron | 20.0% |
| !! | ATCATGAACATTATCAAATA+TGG | + | chr3_4:54857803-54857822 | Msa0507380:intron | 20.0% |
| !! | TCATGAACATTATCAAATAT+GGG | + | chr3_4:54857804-54857823 | Msa0507380:intron | 20.0% |
| !! | TGCTTATTGTAATATGAATT+TGG | + | chr3_4:54857960-54857979 | Msa0507380:intron | 20.0% |
| !! | TTATTGTAATATGAATTTGG+TGG | + | chr3_4:54857963-54857982 | Msa0507380:intron | 20.0% |
| !!! | AAAAGCATAATCTGTTTTTA+CGG | - | chr3_4:54858460-54858479 | None:intergenic | 20.0% |
| !!! | GATCTTTTTGTTAATCAATT+AGG | + | chr3_4:54856507-54856526 | Msa0507380:intron | 20.0% |
| !! | AATCACAGCTATATATTATA+TGG | + | chr3_4:54857095-54857114 | Msa0507380:intron | 20.0% |
| !!! | CTATTTTCTCAAATTACTAA+CGG | - | chr3_4:54857258-54857277 | None:intergenic | 20.0% |
| !!! | TGTGTTTCAAATCAAAATTT+TGG | + | chr3_4:54857553-54857572 | Msa0507380:intron | 20.0% |
| !!! | TATAACTTATTTTCGCTATA+AGG | - | chr3_4:54857773-54857792 | None:intergenic | 20.0% |
| !!! | GCGAAAATAAGTTATATTTT+AGG | + | chr3_4:54857777-54857796 | Msa0507380:intron | 20.0% |
| !! | ATCATGAACATTATCAAATA+TGG | + | chr3_4:54857803-54857822 | Msa0507380:intron | 20.0% |
| !! | TCATGAACATTATCAAATAT+GGG | + | chr3_4:54857804-54857823 | Msa0507380:intron | 20.0% |
| !! | TGCTTATTGTAATATGAATT+TGG | + | chr3_4:54857960-54857979 | Msa0507380:intron | 20.0% |
| !! | TTATTGTAATATGAATTTGG+TGG | + | chr3_4:54857963-54857982 | Msa0507380:intron | 20.0% |
| !!! | AAAAGCATAATCTGTTTTTA+CGG | - | chr3_4:54858460-54858479 | None:intergenic | 20.0% |
| !!! | ATTGCTTTTATACTGTCATT+AGG | + | chr3_4:54856990-54857009 | Msa0507380:intron | 25.0% |
| ! | ACTAATAGAATTAACTGAGT+TGG | - | chr3_4:54857032-54857051 | None:intergenic | 25.0% |
| ! | TAACTAATGTTAGATTGTAG+AGG | + | chr3_4:54857173-54857192 | Msa0507380:intron | 25.0% |
| ! | AACTAATGTTAGATTGTAGA+GGG | + | chr3_4:54857174-54857193 | Msa0507380:intron | 25.0% |
| ! | CATAAAATACAGCAATTAGA+TGG | - | chr3_4:54857402-54857421 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTACTTACTAGA+TGG | - | chr3_4:54857524-54857543 | None:intergenic | 25.0% |
| !! | ACATGATAAGACTTTTCAAT+TGG | + | chr3_4:54857695-54857714 | Msa0507380:intron | 25.0% |
| ! | CATGAACATTATCAAATATG+GGG | + | chr3_4:54857805-54857824 | Msa0507380:intron | 25.0% |
| !! | AATTAGTTCAAGTTCTTACT+CGG | + | chr3_4:54857842-54857861 | Msa0507380:intron | 25.0% |
| ! | TCTTTACTGCTTCAAAAAAT+GGG | - | chr3_4:54858190-54858209 | None:intergenic | 25.0% |
| ! | ATCTTTACTGCTTCAAAAAA+TGG | - | chr3_4:54858191-54858210 | None:intergenic | 25.0% |
| !!! | ATGTCTTTTTTATTTTCTGC+TGG | + | chr3_4:54858512-54858531 | Msa0507380:three_prime_UTR | 25.0% |
| ! | TAATAGTGAGTGAAAAGAAA+TGG | + | chr3_4:54858561-54858580 | Msa0507380:three_prime_UTR | 25.0% |
| ! | AATAGTGAGTGAAAAGAAAT+GGG | + | chr3_4:54858562-54858581 | Msa0507380:three_prime_UTR | 25.0% |
| ! | ATTCAAGTCTAAATATGCAA+GGG | - | chr3_4:54858603-54858622 | None:intergenic | 25.0% |
| ! | AATTCAAGTCTAAATATGCA+AGG | - | chr3_4:54858604-54858623 | None:intergenic | 25.0% |
| !! | TAATTTGCAAGTGAGAAAAA+AGG | + | chr3_4:54858663-54858682 | Msa0507380:three_prime_UTR | 25.0% |
| !!! | ATTGCTTTTATACTGTCATT+AGG | + | chr3_4:54856990-54857009 | Msa0507380:intron | 25.0% |
| ! | ACTAATAGAATTAACTGAGT+TGG | - | chr3_4:54857032-54857051 | None:intergenic | 25.0% |
| ! | TAACTAATGTTAGATTGTAG+AGG | + | chr3_4:54857173-54857192 | Msa0507380:intron | 25.0% |
| ! | AACTAATGTTAGATTGTAGA+GGG | + | chr3_4:54857174-54857193 | Msa0507380:intron | 25.0% |
| ! | CATAAAATACAGCAATTAGA+TGG | - | chr3_4:54857402-54857421 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTACTTACTAGA+TGG | - | chr3_4:54857524-54857543 | None:intergenic | 25.0% |
| !! | ACATGATAAGACTTTTCAAT+TGG | + | chr3_4:54857695-54857714 | Msa0507380:intron | 25.0% |
| ! | CATGAACATTATCAAATATG+GGG | + | chr3_4:54857805-54857824 | Msa0507380:intron | 25.0% |
| !! | AATTAGTTCAAGTTCTTACT+CGG | + | chr3_4:54857842-54857861 | Msa0507380:intron | 25.0% |
| ! | TCTTTACTGCTTCAAAAAAT+GGG | - | chr3_4:54858190-54858209 | None:intergenic | 25.0% |
| ! | ATCTTTACTGCTTCAAAAAA+TGG | - | chr3_4:54858191-54858210 | None:intergenic | 25.0% |
| !!! | ATGTCTTTTTTATTTTCTGC+TGG | + | chr3_4:54858512-54858531 | Msa0507380:three_prime_UTR | 25.0% |
| ! | TAATAGTGAGTGAAAAGAAA+TGG | + | chr3_4:54858561-54858580 | Msa0507380:three_prime_UTR | 25.0% |
| ! | AATAGTGAGTGAAAAGAAAT+GGG | + | chr3_4:54858562-54858581 | Msa0507380:three_prime_UTR | 25.0% |
| ! | ATTCAAGTCTAAATATGCAA+GGG | - | chr3_4:54858603-54858622 | None:intergenic | 25.0% |
| ! | AATTCAAGTCTAAATATGCA+AGG | - | chr3_4:54858604-54858623 | None:intergenic | 25.0% |
| !! | TAATTTGCAAGTGAGAAAAA+AGG | + | chr3_4:54858663-54858682 | Msa0507380:three_prime_UTR | 25.0% |
| TATATGTTTACATTGGTCAG+AGG | + | chr3_4:54856287-54856306 | Msa0507380:exon | 30.0% | |
| ATTTCAGATAGAAAACGTGA+TGG | - | chr3_4:54856319-54856338 | None:intergenic | 30.0% | |
| CTCAAAATTCATGTTCAAAG+AGG | + | chr3_4:54856395-54856414 | Msa0507380:CDS | 30.0% | |
| TCCTTATGTTGTCATCAAAA+TGG | + | chr3_4:54856454-54856473 | Msa0507380:CDS | 30.0% | |
| CCTTATGTTGTCATCAAAAT+GGG | + | chr3_4:54856455-54856474 | Msa0507380:CDS | 30.0% | |
| TTCATTTCAACATGCATAGA+TGG | + | chr3_4:54856751-54856770 | Msa0507380:intron | 30.0% | |
| ACACATTTGATCATAAGTGT+CGG | + | chr3_4:54856932-54856951 | Msa0507380:intron | 30.0% | |
| ATAGTCTGCAATTTATGAGT+GGG | + | chr3_4:54857054-54857073 | Msa0507380:intron | 30.0% | |
| ACTAATGTTAGATTGTAGAG+GGG | + | chr3_4:54857175-54857194 | Msa0507380:intron | 30.0% | |
| AAGTTACTTACTAGATGGAT+TGG | - | chr3_4:54857519-54857538 | None:intergenic | 30.0% | |
| ! | GATATGAAATTTTCTCGCTT+TGG | + | chr3_4:54857611-54857630 | Msa0507380:intron | 30.0% |
| TCTCATATTATCCGTTGTTA+AGG | + | chr3_4:54857869-54857888 | Msa0507380:intron | 30.0% | |
| ! | CGTGTATTTTACCTTAACAA+CGG | - | chr3_4:54857883-54857902 | None:intergenic | 30.0% |
| ! | TGTAATATGAATTTGGTGGA+AGG | + | chr3_4:54857967-54857986 | Msa0507380:intron | 30.0% |
| AATGCAGTTTGTGTATGATA+AGG | + | chr3_4:54858115-54858134 | Msa0507380:intron | 30.0% | |
| !!! | TTTTTGAAGCAGTAAAGATG+CGG | + | chr3_4:54858192-54858211 | Msa0507380:CDS | 30.0% |
| TTGTAACTATAGCCTCATTT+GGG | - | chr3_4:54858229-54858248 | None:intergenic | 30.0% | |
| AAATGAGGCTATAGTTACAA+GGG | + | chr3_4:54858229-54858248 | Msa0507380:CDS | 30.0% | |
| ! | TGGTCAAATTTTCCAAAACA+TGG | + | chr3_4:54858307-54858326 | Msa0507380:CDS | 30.0% |
| ! | TTAGTCTAAGAACCATGTTT+TGG | - | chr3_4:54858322-54858341 | None:intergenic | 30.0% |
| AGACTAAGAAATGTTGAATG+TGG | + | chr3_4:54858335-54858354 | Msa0507380:CDS | 30.0% | |
| GACTAAGAAATGTTGAATGT+GGG | + | chr3_4:54858336-54858355 | Msa0507380:CDS | 30.0% | |
| ACTAAGAAATGTTGAATGTG+GGG | + | chr3_4:54858337-54858356 | Msa0507380:CDS | 30.0% | |
| TTTCACTCACTATTAGTCAT+TGG | - | chr3_4:54858556-54858575 | None:intergenic | 30.0% | |
| TTCAGCTTATGTAATGTACA+AGG | + | chr3_4:54858627-54858646 | Msa0507380:three_prime_UTR | 30.0% | |
| TATATGTTTACATTGGTCAG+AGG | + | chr3_4:54856287-54856306 | Msa0507380:exon | 30.0% | |
| ATTTCAGATAGAAAACGTGA+TGG | - | chr3_4:54856319-54856338 | None:intergenic | 30.0% | |
| CTCAAAATTCATGTTCAAAG+AGG | + | chr3_4:54856395-54856414 | Msa0507380:CDS | 30.0% | |
| TCCTTATGTTGTCATCAAAA+TGG | + | chr3_4:54856454-54856473 | Msa0507380:CDS | 30.0% | |
| CCTTATGTTGTCATCAAAAT+GGG | + | chr3_4:54856455-54856474 | Msa0507380:CDS | 30.0% | |
| TTCATTTCAACATGCATAGA+TGG | + | chr3_4:54856751-54856770 | Msa0507380:intron | 30.0% | |
| ACACATTTGATCATAAGTGT+CGG | + | chr3_4:54856932-54856951 | Msa0507380:intron | 30.0% | |
| ATAGTCTGCAATTTATGAGT+GGG | + | chr3_4:54857054-54857073 | Msa0507380:intron | 30.0% | |
| ACTAATGTTAGATTGTAGAG+GGG | + | chr3_4:54857175-54857194 | Msa0507380:intron | 30.0% | |
| AAGTTACTTACTAGATGGAT+TGG | - | chr3_4:54857519-54857538 | None:intergenic | 30.0% | |
| ! | GATATGAAATTTTCTCGCTT+TGG | + | chr3_4:54857611-54857630 | Msa0507380:intron | 30.0% |
| TCTCATATTATCCGTTGTTA+AGG | + | chr3_4:54857869-54857888 | Msa0507380:intron | 30.0% | |
| ! | CGTGTATTTTACCTTAACAA+CGG | - | chr3_4:54857883-54857902 | None:intergenic | 30.0% |
| ! | TGTAATATGAATTTGGTGGA+AGG | + | chr3_4:54857967-54857986 | Msa0507380:intron | 30.0% |
| AATGCAGTTTGTGTATGATA+AGG | + | chr3_4:54858115-54858134 | Msa0507380:intron | 30.0% | |
| !!! | TTTTTGAAGCAGTAAAGATG+CGG | + | chr3_4:54858192-54858211 | Msa0507380:CDS | 30.0% |
| TTGTAACTATAGCCTCATTT+GGG | - | chr3_4:54858229-54858248 | None:intergenic | 30.0% | |
| AAATGAGGCTATAGTTACAA+GGG | + | chr3_4:54858229-54858248 | Msa0507380:CDS | 30.0% | |
| ! | TGGTCAAATTTTCCAAAACA+TGG | + | chr3_4:54858307-54858326 | Msa0507380:CDS | 30.0% |
| ! | TTAGTCTAAGAACCATGTTT+TGG | - | chr3_4:54858322-54858341 | None:intergenic | 30.0% |
| AGACTAAGAAATGTTGAATG+TGG | + | chr3_4:54858335-54858354 | Msa0507380:CDS | 30.0% | |
| GACTAAGAAATGTTGAATGT+GGG | + | chr3_4:54858336-54858355 | Msa0507380:CDS | 30.0% | |
| ACTAAGAAATGTTGAATGTG+GGG | + | chr3_4:54858337-54858356 | Msa0507380:CDS | 30.0% | |
| TTTCACTCACTATTAGTCAT+TGG | - | chr3_4:54858556-54858575 | None:intergenic | 30.0% | |
| TTCAGCTTATGTAATGTACA+AGG | + | chr3_4:54858627-54858646 | Msa0507380:three_prime_UTR | 30.0% | |
| TCTAACACATTCTGTGTTCA+TGG | + | chr3_4:54856355-54856374 | Msa0507380:CDS | 35.0% | |
| TGTGTTCATGGAGAATTTGT+TGG | + | chr3_4:54856367-54856386 | Msa0507380:CDS | 35.0% | |
| ! | GTGTTCATGGAGAATTTGTT+GGG | + | chr3_4:54856368-54856387 | Msa0507380:CDS | 35.0% |
| !! | CCCATTTTGATGACAACATA+AGG | - | chr3_4:54856458-54856477 | None:intergenic | 35.0% |
| TGTCATCAAAATGGGAAAAC+AGG | + | chr3_4:54856463-54856482 | Msa0507380:CDS | 35.0% | |
| GATAGTCTGCAATTTATGAG+TGG | + | chr3_4:54857053-54857072 | Msa0507380:intron | 35.0% | |
| TAGTCTGCAATTTATGAGTG+GGG | + | chr3_4:54857055-54857074 | Msa0507380:intron | 35.0% | |
| ACAATAAGTTGTTCTCCCAT+TGG | + | chr3_4:54857139-54857158 | Msa0507380:intron | 35.0% | |
| CAATAAGTTGTTCTCCCATT+GGG | + | chr3_4:54857140-54857159 | Msa0507380:intron | 35.0% | |
| AATAAGTTGTTCTCCCATTG+GGG | + | chr3_4:54857141-54857160 | Msa0507380:intron | 35.0% | |
| GTTAACACAATAACCCCAAT+GGG | - | chr3_4:54857157-54857176 | None:intergenic | 35.0% | |
| AGTTAACACAATAACCCCAA+TGG | - | chr3_4:54857158-54857177 | None:intergenic | 35.0% | |
| ! | GCACTGATAATTCACATTGA+AGG | - | chr3_4:54857338-54857357 | None:intergenic | 35.0% |
| GTGAATTATCAGTGCTACAT+AGG | + | chr3_4:54857343-54857362 | Msa0507380:intron | 35.0% | |
| AGAAGAATCTAAATCCTGAG+TGG | + | chr3_4:54857454-54857473 | Msa0507380:CDS | 35.0% | |
| GAAGAATCTAAATCCTGAGT+GGG | + | chr3_4:54857455-54857474 | Msa0507380:CDS | 35.0% | |
| ! | GAAATTTTCTCGCTTTGGTT+TGG | + | chr3_4:54857616-54857635 | Msa0507380:intron | 35.0% |
| CTTGTAACTATAGCCTCATT+TGG | - | chr3_4:54858230-54858249 | None:intergenic | 35.0% | |
| CAAATGAGGCTATAGTTACA+AGG | + | chr3_4:54858228-54858247 | Msa0507380:CDS | 35.0% | |
| AGTCACATTGTTTGGAAAGA+TGG | + | chr3_4:54858287-54858306 | Msa0507380:CDS | 35.0% | |
| GAGAAAAAAGGATCTATTGC+AGG | + | chr3_4:54858675-54858694 | Msa0507380:three_prime_UTR | 35.0% | |
| TCTAACACATTCTGTGTTCA+TGG | + | chr3_4:54856355-54856374 | Msa0507380:CDS | 35.0% | |
| TGTGTTCATGGAGAATTTGT+TGG | + | chr3_4:54856367-54856386 | Msa0507380:CDS | 35.0% | |
| ! | GTGTTCATGGAGAATTTGTT+GGG | + | chr3_4:54856368-54856387 | Msa0507380:CDS | 35.0% |
| !! | CCCATTTTGATGACAACATA+AGG | - | chr3_4:54856458-54856477 | None:intergenic | 35.0% |
| TGTCATCAAAATGGGAAAAC+AGG | + | chr3_4:54856463-54856482 | Msa0507380:CDS | 35.0% | |
| GATAGTCTGCAATTTATGAG+TGG | + | chr3_4:54857053-54857072 | Msa0507380:intron | 35.0% | |
| TAGTCTGCAATTTATGAGTG+GGG | + | chr3_4:54857055-54857074 | Msa0507380:intron | 35.0% | |
| ACAATAAGTTGTTCTCCCAT+TGG | + | chr3_4:54857139-54857158 | Msa0507380:intron | 35.0% | |
| CAATAAGTTGTTCTCCCATT+GGG | + | chr3_4:54857140-54857159 | Msa0507380:intron | 35.0% | |
| AATAAGTTGTTCTCCCATTG+GGG | + | chr3_4:54857141-54857160 | Msa0507380:intron | 35.0% | |
| GTTAACACAATAACCCCAAT+GGG | - | chr3_4:54857157-54857176 | None:intergenic | 35.0% | |
| AGTTAACACAATAACCCCAA+TGG | - | chr3_4:54857158-54857177 | None:intergenic | 35.0% | |
| ! | GCACTGATAATTCACATTGA+AGG | - | chr3_4:54857338-54857357 | None:intergenic | 35.0% |
| GTGAATTATCAGTGCTACAT+AGG | + | chr3_4:54857343-54857362 | Msa0507380:intron | 35.0% | |
| AGAAGAATCTAAATCCTGAG+TGG | + | chr3_4:54857454-54857473 | Msa0507380:CDS | 35.0% | |
| GAAGAATCTAAATCCTGAGT+GGG | + | chr3_4:54857455-54857474 | Msa0507380:CDS | 35.0% | |
| ! | GAAATTTTCTCGCTTTGGTT+TGG | + | chr3_4:54857616-54857635 | Msa0507380:intron | 35.0% |
| CTTGTAACTATAGCCTCATT+TGG | - | chr3_4:54858230-54858249 | None:intergenic | 35.0% | |
| CAAATGAGGCTATAGTTACA+AGG | + | chr3_4:54858228-54858247 | Msa0507380:CDS | 35.0% | |
| AGTCACATTGTTTGGAAAGA+TGG | + | chr3_4:54858287-54858306 | Msa0507380:CDS | 35.0% | |
| AGATAGAAAACGTGATGGCA+GGG | - | chr3_4:54856314-54856333 | None:intergenic | 40.0% | |
| CTATGTTGTGTCAAGTGTCT+GGG | - | chr3_4:54856820-54856839 | None:intergenic | 40.0% | |
| TCTATGTTGTGTCAAGTGTC+TGG | - | chr3_4:54856821-54856840 | None:intergenic | 40.0% | |
| TACATGTGTCAGTATCGTGT+AGG | + | chr3_4:54857295-54857314 | Msa0507380:intron | 40.0% | |
| ACACAGACAAGAGATGCATA+AGG | - | chr3_4:54857375-54857394 | None:intergenic | 40.0% | |
| TGGAGTATGAGGATCTGAAA+TGG | - | chr3_4:54857499-54857518 | None:intergenic | 40.0% | |
| !! | ACTAGATGGATTGGAGTATG+AGG | - | chr3_4:54857510-54857529 | None:intergenic | 40.0% |
| CATACACAAACTGCATTGCA+AGG | - | chr3_4:54858112-54858131 | None:intergenic | 40.0% | |
| TGATAAGGACACATTCAGCT+TGG | + | chr3_4:54858130-54858149 | Msa0507380:CDS | 40.0% | |
| ATTCAGCTTGGACGACAAAA+TGG | + | chr3_4:54858142-54858161 | Msa0507380:CDS | 40.0% | |
| TTCAGCTTGGACGACAAAAT+GGG | + | chr3_4:54858143-54858162 | Msa0507380:CDS | 40.0% | |
| ! | GCTAAGCAATTTTGTCTGCT+AGG | - | chr3_4:54858260-54858279 | None:intergenic | 40.0% |
| CAGAAGAGAGTCACATTGTT+TGG | + | chr3_4:54858279-54858298 | Msa0507380:CDS | 40.0% | |
| AAATGTTGAATGTGGGGAAG+TGG | + | chr3_4:54858343-54858362 | Msa0507380:CDS | 40.0% | |
| GTTGACATTCCTGGTTCAAA+GGG | + | chr3_4:54858383-54858402 | Msa0507380:CDS | 40.0% | |
| AGATAGAAAACGTGATGGCA+GGG | - | chr3_4:54856314-54856333 | None:intergenic | 40.0% | |
| CTATGTTGTGTCAAGTGTCT+GGG | - | chr3_4:54856820-54856839 | None:intergenic | 40.0% | |
| TCTATGTTGTGTCAAGTGTC+TGG | - | chr3_4:54856821-54856840 | None:intergenic | 40.0% | |
| TACATGTGTCAGTATCGTGT+AGG | + | chr3_4:54857295-54857314 | Msa0507380:intron | 40.0% | |
| ACACAGACAAGAGATGCATA+AGG | - | chr3_4:54857375-54857394 | None:intergenic | 40.0% | |
| TGGAGTATGAGGATCTGAAA+TGG | - | chr3_4:54857499-54857518 | None:intergenic | 40.0% | |
| !! | ACTAGATGGATTGGAGTATG+AGG | - | chr3_4:54857510-54857529 | None:intergenic | 40.0% |
| CATACACAAACTGCATTGCA+AGG | - | chr3_4:54858112-54858131 | None:intergenic | 40.0% | |
| TGATAAGGACACATTCAGCT+TGG | + | chr3_4:54858130-54858149 | Msa0507380:CDS | 40.0% | |
| ATTCAGCTTGGACGACAAAA+TGG | + | chr3_4:54858142-54858161 | Msa0507380:CDS | 40.0% | |
| TTCAGCTTGGACGACAAAAT+GGG | + | chr3_4:54858143-54858162 | Msa0507380:CDS | 40.0% | |
| ! | GCTAAGCAATTTTGTCTGCT+AGG | - | chr3_4:54858260-54858279 | None:intergenic | 40.0% |
| CAGAAGAGAGTCACATTGTT+TGG | + | chr3_4:54858279-54858298 | Msa0507380:CDS | 40.0% | |
| AAATGTTGAATGTGGGGAAG+TGG | + | chr3_4:54858343-54858362 | Msa0507380:CDS | 40.0% | |
| GTTGACATTCCTGGTTCAAA+GGG | + | chr3_4:54858383-54858402 | Msa0507380:CDS | 40.0% | |
| GATAGAAAACGTGATGGCAG+GGG | - | chr3_4:54856313-54856332 | None:intergenic | 45.0% | |
| CAGATAGAAAACGTGATGGC+AGG | - | chr3_4:54856315-54856334 | None:intergenic | 45.0% | |
| TGATGCAGAAGCTGAAGACT+AGG | + | chr3_4:54857424-54857443 | Msa0507380:intron | 45.0% | |
| GATGCAGAAGCTGAAGACTA+GGG | + | chr3_4:54857425-54857444 | Msa0507380:intron | 45.0% | |
| TCAGCTTGGACGACAAAATG+GGG | + | chr3_4:54858144-54858163 | Msa0507380:CDS | 45.0% | |
| TGAAGCAGTAAAGATGCGGT+TGG | + | chr3_4:54858196-54858215 | Msa0507380:CDS | 45.0% | |
| GGTTGACATTCCTGGTTCAA+AGG | + | chr3_4:54858382-54858401 | Msa0507380:CDS | 45.0% | |
| !! | TCCTGGTTCAAAGGGTATCT+AGG | + | chr3_4:54858391-54858410 | Msa0507380:CDS | 45.0% |
| ACCTAGATACCCTTTGAACC+AGG | - | chr3_4:54858395-54858414 | None:intergenic | 45.0% | |
| GATAGAAAACGTGATGGCAG+GGG | - | chr3_4:54856313-54856332 | None:intergenic | 45.0% | |
| CAGATAGAAAACGTGATGGC+AGG | - | chr3_4:54856315-54856334 | None:intergenic | 45.0% | |
| TGATGCAGAAGCTGAAGACT+AGG | + | chr3_4:54857424-54857443 | Msa0507380:intron | 45.0% | |
| GATGCAGAAGCTGAAGACTA+GGG | + | chr3_4:54857425-54857444 | Msa0507380:intron | 45.0% | |
| TCAGCTTGGACGACAAAATG+GGG | + | chr3_4:54858144-54858163 | Msa0507380:CDS | 45.0% | |
| TGAAGCAGTAAAGATGCGGT+TGG | + | chr3_4:54858196-54858215 | Msa0507380:CDS | 45.0% | |
| GGTTGACATTCCTGGTTCAA+AGG | + | chr3_4:54858382-54858401 | Msa0507380:CDS | 45.0% | |
| !! | TCCTGGTTCAAAGGGTATCT+AGG | + | chr3_4:54858391-54858410 | Msa0507380:CDS | 45.0% |
| ACCTAGATACCCTTTGAACC+AGG | - | chr3_4:54858395-54858414 | None:intergenic | 45.0% | |
| !! | CATAAGTGTCGGTGCTACAG+AGG | + | chr3_4:54856943-54856962 | Msa0507380:intron | 50.0% |
| CAAGCTGTCAGCTTCGATGT+CGG | - | chr3_4:54857224-54857243 | None:intergenic | 50.0% | |
| GTGTCAGTATCGTGTAGGTG+CGG | + | chr3_4:54857300-54857319 | Msa0507380:intron | 50.0% | |
| TCTAAATCCTGAGTGGGACG+AGG | + | chr3_4:54857461-54857480 | Msa0507380:CDS | 50.0% | |
| CAGCTTGGACGACAAAATGG+GGG | + | chr3_4:54858145-54858164 | Msa0507380:CDS | 50.0% | |
| AAGTGGAACTCCAGTTGCAC+TGG | + | chr3_4:54858360-54858379 | Msa0507380:CDS | 50.0% | |
| AGTGGAACTCCAGTTGCACT+GGG | + | chr3_4:54858361-54858380 | Msa0507380:CDS | 50.0% | |
| GAATGTCAACCCAGTGCAAC+TGG | - | chr3_4:54858373-54858392 | None:intergenic | 50.0% | |
| ! | TTGCACTGGGTTGACATTCC+TGG | + | chr3_4:54858374-54858393 | Msa0507380:CDS | 50.0% |
| !! | CATAAGTGTCGGTGCTACAG+AGG | + | chr3_4:54856943-54856962 | Msa0507380:intron | 50.0% |
| CAAGCTGTCAGCTTCGATGT+CGG | - | chr3_4:54857224-54857243 | None:intergenic | 50.0% | |
| GTGTCAGTATCGTGTAGGTG+CGG | + | chr3_4:54857300-54857319 | Msa0507380:intron | 50.0% | |
| TCTAAATCCTGAGTGGGACG+AGG | + | chr3_4:54857461-54857480 | Msa0507380:CDS | 50.0% | |
| CAGCTTGGACGACAAAATGG+GGG | + | chr3_4:54858145-54858164 | Msa0507380:CDS | 50.0% | |
| AAGTGGAACTCCAGTTGCAC+TGG | + | chr3_4:54858360-54858379 | Msa0507380:CDS | 50.0% | |
| AGTGGAACTCCAGTTGCACT+GGG | + | chr3_4:54858361-54858380 | Msa0507380:CDS | 50.0% | |
| GAATGTCAACCCAGTGCAAC+TGG | - | chr3_4:54858373-54858392 | None:intergenic | 50.0% | |
| ! | TTGCACTGGGTTGACATTCC+TGG | + | chr3_4:54858374-54858393 | Msa0507380:CDS | 50.0% |
| GGGGACGCTGAGTTTGACAT+CGG | + | chr3_4:54858164-54858183 | Msa0507380:CDS | 55.0% | |
| GCAGTAAAGATGCGGTTGGC+AGG | + | chr3_4:54858200-54858219 | Msa0507380:CDS | 55.0% | |
| GTTGGCAGGTCTCCCAAATG+AGG | + | chr3_4:54858214-54858233 | Msa0507380:CDS | 55.0% | |
| GGGGACGCTGAGTTTGACAT+CGG | + | chr3_4:54858164-54858183 | Msa0507380:CDS | 55.0% | |
| GCAGTAAAGATGCGGTTGGC+AGG | + | chr3_4:54858200-54858219 | Msa0507380:CDS | 55.0% | |
| GTTGGCAGGTCTCCCAAATG+AGG | + | chr3_4:54858214-54858233 | Msa0507380:CDS | 55.0% | |
| GTCAAGTCCTCGTCCCACTC+AGG | - | chr3_4:54857471-54857490 | None:intergenic | 60.0% | |
| GTCAAGTCCTCGTCCCACTC+AGG | - | chr3_4:54857471-54857490 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 54856284 | 54858697 | 54856284 | ID=Msa0507380;Name=Msa0507380 |
| chr3_4 | mRNA | 54856284 | 54858697 | 54856284 | ID=Msa0507380-mRNA-1;Parent=Msa0507380;Name=Msa0507380-mRNA-1;_AED=0.13;_eAED=0.13;_QI=6|1|1|1|1|1|3|285|193 |
| chr3_4 | exon | 54856284 | 54856484 | 54856284 | ID=Msa0507380-mRNA-1:exon:12102;Parent=Msa0507380-mRNA-1 |
| chr3_4 | exon | 54857432 | 54857527 | 54857432 | ID=Msa0507380-mRNA-1:exon:12103;Parent=Msa0507380-mRNA-1 |
| chr3_4 | exon | 54858122 | 54858697 | 54858122 | ID=Msa0507380-mRNA-1:exon:12104;Parent=Msa0507380-mRNA-1 |
| chr3_4 | five_prime_UTR | 54856284 | 54856289 | 54856284 | ID=Msa0507380-mRNA-1:five_prime_utr;Parent=Msa0507380-mRNA-1 |
| chr3_4 | CDS | 54856290 | 54856484 | 54856290 | ID=Msa0507380-mRNA-1:cds;Parent=Msa0507380-mRNA-1 |
| chr3_4 | CDS | 54857432 | 54857527 | 54857432 | ID=Msa0507380-mRNA-1:cds;Parent=Msa0507380-mRNA-1 |
| chr3_4 | CDS | 54858122 | 54858412 | 54858122 | ID=Msa0507380-mRNA-1:cds;Parent=Msa0507380-mRNA-1 |
| chr3_4 | three_prime_UTR | 54858413 | 54858697 | 54858413 | ID=Msa0507380-mRNA-1:three_prime_utr;Parent=Msa0507380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
