Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368780 | XP_003600780.1 | 97.902 | 572 | 12 | 0 | 1 | 572 | 1 | 572 | 0.0 | 1160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368780 | sp|Q39033|PLCD2_ARATH | 68.739 | 579 | 164 | 6 | 2 | 572 | 12 | 581 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368780 | G7JA07 | 97.902 | 572 | 12 | 0 | 1 | 572 | 1 | 572 | 0.0 | 1160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038310 | Msa0368780 | 0.828281 | 9.807409e-55 | -8.615850e-47 |
| Msa0132620 | Msa0368780 | 0.816296 | 5.948192e-52 | -8.615850e-47 |
| Msa0223100 | Msa0368780 | 0.812068 | 5.104575e-51 | -8.615850e-47 |
| Msa0368780 | Msa0416060 | 0.894805 | 1.744971e-75 | -8.615850e-47 |
| Msa0368780 | Msa0416320 | 0.803185 | 3.933582e-49 | -8.615850e-47 |
| Msa0368780 | Msa0508310 | 0.858441 | 8.222176e-63 | -8.615850e-47 |
| Msa0368780 | Msa0577870 | 0.826584 | 2.503572e-54 | -8.615850e-47 |
| Msa0368780 | Msa0610770 | 0.822240 | 2.632745e-53 | -8.615850e-47 |
| Msa0368780 | Msa0651320 | 0.813454 | 2.539329e-51 | -8.615850e-47 |
| Msa0368780 | Msa0713210 | 0.801591 | 8.375411e-49 | -8.615850e-47 |
| Msa0368780 | Msa0726610 | 0.801849 | 7.413958e-49 | -8.615850e-47 |
| Msa0368780 | Msa0755090 | 0.825495 | 4.544545e-54 | -8.615850e-47 |
| Msa0368780 | Msa0834450 | 0.802571 | 5.268016e-49 | -8.615850e-47 |
| Msa0368780 | Msa0834460 | 0.810359 | 1.198807e-50 | -8.615850e-47 |
| Msa0368780 | Msa1067910 | 0.812024 | 5.221092e-51 | -8.615850e-47 |
| Msa0368780 | Msa1383480 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
| Msa0368780 | Msa1395580 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0302650 | Msa0368780 | 0.816804 | 4.577849e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368780 | MtrunA17_Chr3g0112551 | 97.902 | 572 | 12 | 0 | 1 | 572 | 1 | 572 | 0.0 | 1160 |
| Msa0368780 | MtrunA17_Chr3g0113531 | 91.765 | 595 | 24 | 3 | 1 | 572 | 1 | 593 | 0.0 | 1018 |
| Msa0368780 | MtrunA17_Chr5g0437081 | 74.913 | 574 | 133 | 5 | 7 | 571 | 17 | 588 | 0.0 | 888 |
| Msa0368780 | MtrunA17_Chr5g0430181 | 61.356 | 590 | 204 | 7 | 2 | 572 | 10 | 594 | 0.0 | 731 |
| Msa0368780 | MtrunA17_Chr5g0437061 | 62.425 | 503 | 156 | 6 | 90 | 571 | 1 | 491 | 0.0 | 626 |
| Msa0368780 | MtrunA17_Chr5g0437041 | 50.167 | 600 | 253 | 10 | 6 | 571 | 19 | 606 | 0.0 | 577 |
| Msa0368780 | MtrunA17_Chr3g0113521 | 50.000 | 584 | 262 | 9 | 6 | 571 | 15 | 586 | 0.0 | 565 |
| Msa0368780 | MtrunA17_Chr3g0113471 | 50.433 | 577 | 258 | 8 | 12 | 571 | 22 | 587 | 0.0 | 562 |
| Msa0368780 | MtrunA17_Chr5g0430191 | 50.344 | 582 | 242 | 10 | 2 | 571 | 26 | 572 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368780 | AT3G08510.2 | 68.739 | 579 | 164 | 6 | 2 | 572 | 12 | 581 | 0.0 | 822 |
| Msa0368780 | AT3G08510.1 | 68.739 | 579 | 164 | 6 | 2 | 572 | 12 | 581 | 0.0 | 822 |
| Msa0368780 | AT3G55940.1 | 66.265 | 581 | 178 | 7 | 2 | 572 | 12 | 584 | 0.0 | 770 |
| Msa0368780 | AT3G08510.4 | 64.767 | 579 | 158 | 7 | 2 | 572 | 12 | 552 | 0.0 | 750 |
| Msa0368780 | AT3G08510.3 | 64.767 | 579 | 158 | 7 | 2 | 572 | 12 | 552 | 0.0 | 750 |
| Msa0368780 | AT2G40116.1 | 59.319 | 558 | 197 | 7 | 30 | 571 | 69 | 612 | 0.0 | 664 |
| Msa0368780 | AT5G58700.3 | 56.655 | 586 | 229 | 8 | 6 | 572 | 18 | 597 | 0.0 | 659 |
| Msa0368780 | AT5G58700.1 | 56.655 | 586 | 229 | 8 | 6 | 572 | 18 | 597 | 0.0 | 659 |
| Msa0368780 | AT5G58700.2 | 62.857 | 490 | 175 | 4 | 86 | 572 | 4 | 489 | 0.0 | 631 |
| Msa0368780 | AT5G58690.2 | 52.830 | 583 | 224 | 7 | 13 | 572 | 5 | 559 | 0.0 | 611 |
| Msa0368780 | AT5G58690.3 | 52.830 | 583 | 224 | 7 | 13 | 572 | 24 | 578 | 0.0 | 610 |
| Msa0368780 | AT5G58690.1 | 52.830 | 583 | 224 | 7 | 13 | 572 | 24 | 578 | 0.0 | 610 |
| Msa0368780 | AT5G58670.1 | 51.313 | 571 | 232 | 5 | 11 | 569 | 20 | 556 | 0.0 | 565 |
| Msa0368780 | AT4G38530.1 | 47.751 | 578 | 257 | 7 | 3 | 569 | 12 | 555 | 0.0 | 528 |
| Msa0368780 | AT3G47290.1 | 38.336 | 553 | 271 | 11 | 21 | 571 | 46 | 530 | 1.37e-120 | 367 |
| Msa0368780 | AT3G47290.2 | 38.208 | 547 | 265 | 12 | 21 | 565 | 46 | 521 | 1.19e-116 | 358 |
| Msa0368780 | AT3G47220.1 | 36.851 | 578 | 280 | 13 | 13 | 571 | 19 | 530 | 3.97e-111 | 342 |
Find 161 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3_1:-65642513 | Msa0368780:CDS |
| ATAATAGTTGGTTGCCTTCT+TGG | 0.178944 | 3_1:-65641353 | Msa0368780:CDS |
| AGGATCGAAAACCTCATTAT+TGG | 0.216160 | 3_1:+65642091 | None:intergenic |
| GCAATCATACATGCTATTAA+AGG | 0.227701 | 3_1:-65645423 | Msa0368780:five_prime_UTR |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3_1:-65643780 | Msa0368780:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3_1:+65642501 | None:intergenic |
| TAATTAGGTCACTGTATATA+TGG | 0.245203 | 3_1:-65641915 | Msa0368780:intron |
| ATACATGCTATTAAAGGATT+TGG | 0.249059 | 3_1:-65645417 | Msa0368780:five_prime_UTR |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3_1:-65642202 | Msa0368780:intron |
| TGTAGTCATCTGATGCATTT+TGG | 0.262746 | 3_1:+65643153 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3_1:-65642203 | Msa0368780:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3_1:+65643065 | None:intergenic |
| CCCGCTTTCTGTTCCGGAGC+TGG | 0.275180 | 3_1:-65641313 | Msa0368780:CDS |
| TTTGATGGCAAATGAGCTTT+AGG | 0.277773 | 3_1:+65642071 | None:intergenic |
| CTTATGCAGGTTGGAATTGC+TGG | 0.289356 | 3_1:-65641417 | Msa0368780:intron |
| TGAATTCCCGCTTTCTGTTC+CGG | 0.306917 | 3_1:-65641319 | Msa0368780:CDS |
| AATATTGTTGGGACCTGTTT+GGG | 0.310488 | 3_1:+65645258 | None:intergenic |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3_1:-65642190 | Msa0368780:CDS |
| GGATCGAAAACCTCATTATT+GGG | 0.335505 | 3_1:+65642092 | None:intergenic |
| CTCTGAAGTGCTTCGATGAT+GGG | 0.355533 | 3_1:+65643994 | None:intergenic |
| CTTCGTTGCGTCTGAATATC+CGG | 0.360784 | 3_1:-65643750 | Msa0368780:CDS |
| CCACCTTACTCCTGATCTTC+AGG | 0.370917 | 3_1:-65643708 | Msa0368780:CDS |
| AAATATTGTTGGGACCTGTT+TGG | 0.371843 | 3_1:+65645257 | None:intergenic |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3_1:-65643562 | Msa0368780:CDS |
| TCACAGAAGGGAAAGCCTTT+AGG | 0.380419 | 3_1:-65643403 | Msa0368780:CDS |
| ATGTCTGAGAAGGATGATTT+TGG | 0.381957 | 3_1:-65641258 | Msa0368780:CDS |
| TATATGGCCTAATGACTCTA+AGG | 0.383342 | 3_1:-65643947 | Msa0368780:CDS |
| AGTCATAATTCATATCTAAC+TGG | 0.383517 | 3_1:-65644048 | Msa0368780:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3_1:+65643101 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3_1:+65643698 | None:intergenic |
| CGCTTAATTGCTATTCATGC+TGG | 0.391854 | 3_1:-65643128 | Msa0368780:CDS |
| CCTCAGAAGCTTTCTGATTG+AGG | 0.391870 | 3_1:-65644997 | Msa0368780:CDS |
| GAGTGATTGAATTGGATATA+TGG | 0.394919 | 3_1:-65643963 | Msa0368780:CDS |
| AGCTTAGAAGTTTAGCTACT+AGG | 0.401385 | 3_1:-65641109 | Msa0368780:three_prime_UTR |
| GGAGGCACCGCCGGAGATAA+AGG | 0.402355 | 3_1:-65645069 | Msa0368780:CDS |
| TAAAATTCAATGAAATACTA+AGG | 0.405027 | 3_1:+65645374 | None:intergenic |
| TGTCCACGTGGGTCCCAAAC+AGG | 0.406390 | 3_1:-65645271 | Msa0368780:five_prime_UTR |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3_1:-65643386 | Msa0368780:CDS |
| CGGCGGTGCCTCCGATACGC+TGG | 0.420667 | 3_1:+65645079 | None:intergenic |
| TCTCTGAAGTGCTTCGATGA+TGG | 0.421908 | 3_1:+65643993 | None:intergenic |
| ACGAGTACAAATATGTGTTA+TGG | 0.424472 | 3_1:+65641031 | None:intergenic |
| AGGTGTTAGAGTGATTGAAT+TGG | 0.428703 | 3_1:-65643971 | Msa0368780:CDS |
| AATTCTGAAGAAATATTGTT+GGG | 0.429867 | 3_1:+65645247 | None:intergenic |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3_1:-65643524 | Msa0368780:CDS |
| GACATGGCACATGGCATCCT+TGG | 0.442411 | 3_1:+65645290 | None:intergenic |
| TCTTCTAGTGTTATTACAAC+CGG | 0.444726 | 3_1:+65643731 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3_1:+65641839 | None:intergenic |
| TCTCCTTCGCGGGAATGTAA+TGG | 0.452778 | 3_1:+65641183 | None:intergenic |
| GATGATGTTGATGTCCTTCA+TGG | 0.454017 | 3_1:-65643925 | Msa0368780:CDS |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3_1:-65642512 | Msa0368780:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3_1:+65641300 | None:intergenic |
| CATATGGAAAAGAAATTGTC+AGG | 0.456553 | 3_1:-65643007 | Msa0368780:intron |
| AGATTCCGATGAAGCGGAAA+AGG | 0.459147 | 3_1:-65643180 | Msa0368780:CDS |
| CCTTGAAGCTAAAGAAGAAA+AGG | 0.464912 | 3_1:-65643437 | Msa0368780:CDS |
| AAATCATGCTTGGAAAGTTA+AGG | 0.464924 | 3_1:+65640962 | None:intergenic |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3_1:+65643456 | None:intergenic |
| AAATTCTGAAGAAATATTGT+TGG | 0.466364 | 3_1:+65645246 | None:intergenic |
| GAAAAGGCTGCTGAAACATA+TGG | 0.467059 | 3_1:-65643023 | Msa0368780:CDS |
| CTAACTAACCTGAGCCACTT+TGG | 0.472125 | 3_1:+65643685 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3_1:+65643352 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3_1:+65642537 | None:intergenic |
| TACCATCGTTACTCCGATGA+AGG | 0.479952 | 3_1:-65645041 | Msa0368780:CDS |
| GTTTATCTTAAATACCCTCT+TGG | 0.480633 | 3_1:-65641087 | Msa0368780:three_prime_UTR |
| GACGTCAAACATTTGATAAG+TGG | 0.483251 | 3_1:+65643788 | None:intergenic |
| AGCTAAAGAAGAAAAGGAAA+AGG | 0.484145 | 3_1:-65643431 | Msa0368780:CDS |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3_1:+65642145 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3_1:-65642501 | Msa0368780:CDS |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3_1:-65643693 | Msa0368780:intron |
| CAAAGTCAACAGATAATAGT+TGG | 0.492685 | 3_1:-65641365 | Msa0368780:CDS |
| AATTAGGTCACTGTATATAT+GGG | 0.492839 | 3_1:-65641914 | Msa0368780:intron |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3_1:-65642472 | Msa0368780:intron |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3_1:+65643388 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3_1:-65641346 | Msa0368780:CDS |
| CAGCGTATCGGAGGCACCGC+CGG | 0.501237 | 3_1:-65645078 | Msa0368780:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3_1:-65643387 | Msa0368780:CDS |
| TAAAGAAGAAAAGGAAAAGG+AGG | 0.506940 | 3_1:-65643428 | Msa0368780:CDS |
| TGTCGATGAAGATGATCTTA+AGG | 0.513054 | 3_1:-65643210 | Msa0368780:CDS |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3_1:+65643523 | None:intergenic |
| GAAAACTGGTCCCAATAATG+AGG | 0.515061 | 3_1:-65642102 | Msa0368780:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3_1:-65643338 | Msa0368780:intron |
| GTTGTATTTATCTCCTTCGC+GGG | 0.517351 | 3_1:+65641173 | None:intergenic |
| GTTTGGGACCCACGTGGACA+TGG | 0.519758 | 3_1:+65645274 | None:intergenic |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3_1:-65642161 | Msa0368780:CDS |
| TGTCAAATGTAAATCATGCT+TGG | 0.521267 | 3_1:+65640952 | None:intergenic |
| GGCGGTGCCTCCGATACGCT+GGG | 0.521442 | 3_1:+65645080 | None:intergenic |
| AAGATCTCTACGATCAATGA+TGG | 0.522171 | 3_1:+65644935 | None:intergenic |
| AGGTGAAAGAAATTCCTTCA+AGG | 0.523272 | 3_1:+65643510 | None:intergenic |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.523615 | 3_1:-65643105 | Msa0368780:CDS |
| TTAGCTTCAAGGTACTCCTT+AGG | 0.524662 | 3_1:+65643448 | None:intergenic |
| ATCGTTACTCCGATGAAGGC+GGG | 0.525010 | 3_1:-65645037 | Msa0368780:CDS |
| TCTGAAGTGCTTCGATGATG+GGG | 0.528251 | 3_1:+65643995 | None:intergenic |
| TGGCCTGAAGATCAGGAGTA+AGG | 0.530572 | 3_1:+65643705 | None:intergenic |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3_1:-65643464 | Msa0368780:CDS |
| TGTTGTATTTATCTCCTTCG+CGG | 0.535824 | 3_1:+65641172 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3_1:-65642509 | Msa0368780:CDS |
| GGAAAAGGAGGAATCACAGA+AGG | 0.541089 | 3_1:-65643416 | Msa0368780:CDS |
| TGGTAAAGCTCCTTTATCTC+CGG | 0.542445 | 3_1:+65645059 | None:intergenic |
| CATGATAATAGATAATAAAG+TGG | 0.542789 | 3_1:-65640991 | Msa0368780:three_prime_UTR |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3_1:-65642152 | Msa0368780:CDS |
| ATTCATGCTGGGAAGCCTAA+AGG | 0.548804 | 3_1:-65643116 | Msa0368780:CDS |
| ATGTTACTTCATTCAATCCA+AGG | 0.549197 | 3_1:-65645307 | Msa0368780:five_prime_UTR |
| GCCAGCTCCGGAACAGAAAG+CGG | 0.549635 | 3_1:+65641312 | None:intergenic |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3_1:-65643039 | Msa0368780:CDS |
| CCAGCTCCGGAACAGAAAGC+GGG | 0.556338 | 3_1:+65641313 | None:intergenic |
| AGTCATGATCCCGCCTTCAT+CGG | 0.556822 | 3_1:+65645028 | None:intergenic |
| GCTTAATTGCTATTCATGCT+GGG | 0.557069 | 3_1:-65643127 | Msa0368780:CDS |
| CCTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3_1:+65644997 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3_1:+65643353 | None:intergenic |
| TGAAGATGATCTTAAGGAGG+AGG | 0.558834 | 3_1:-65643204 | Msa0368780:CDS |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3_1:+65644091 | None:intergenic |
| CGGATATTCAGACGCAACGA+AGG | 0.561402 | 3_1:+65643751 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3_1:+65642518 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3_1:-65642490 | Msa0368780:CDS |
| ACCCCAGTGGAAGGTAAAAG+AGG | 0.562878 | 3_1:+65644867 | None:intergenic |
| ACATCATCCTTAGAGTCATT+AGG | 0.562946 | 3_1:+65643940 | None:intergenic |
| TGCAAGATGGTGATGACACT+TGG | 0.566067 | 3_1:+65641064 | None:intergenic |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3_1:-65643699 | Msa0368780:CDS |
| ACCCACGTGGACATGGCACA+TGG | 0.572265 | 3_1:+65645281 | None:intergenic |
| CCTGTGTGGGAACTAAGAAA+CGG | 0.577952 | 3_1:-65641219 | Msa0368780:CDS |
| ATCTCCAGACTTCTATGCAA+GGG | 0.579812 | 3_1:-65641843 | Msa0368780:intron |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.582171 | 3_1:+65643451 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3_1:-65642179 | Msa0368780:CDS |
| GTGATGACACTTGGCCAAGA+GGG | 0.584450 | 3_1:+65641073 | None:intergenic |
| CATCGTTACTCCGATGAAGG+CGG | 0.584531 | 3_1:-65645038 | Msa0368780:CDS |
| CTGAAGTGCTTCGATGATGG+GGG | 0.585163 | 3_1:+65643996 | None:intergenic |
| GTCACTGTATATATGGGAGA+AGG | 0.587116 | 3_1:-65641908 | Msa0368780:CDS |
| TCAAATACCTCATTCCAAGA+AGG | 0.587279 | 3_1:+65641339 | None:intergenic |
| CATCTCCAGACTTCTATGCA+AGG | 0.588070 | 3_1:-65641844 | Msa0368780:CDS |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.588145 | 3_1:+65643519 | None:intergenic |
| AAACATTTGATAAGTGGCAC+AGG | 0.590787 | 3_1:+65643794 | None:intergenic |
| AAGAGGATTACCCCAGTGGA+AGG | 0.591185 | 3_1:+65644858 | None:intergenic |
| GGAGGAAGATTCCGATGAAG+CGG | 0.594226 | 3_1:-65643186 | Msa0368780:CDS |
| GTTCCATTACATTCCCGCGA+AGG | 0.594715 | 3_1:-65641186 | Msa0368780:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.597062 | 3_1:+65643911 | None:intergenic |
| CGCCTTCATCGGAGTAACGA+TGG | 0.598173 | 3_1:+65645039 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3_1:-65643233 | Msa0368780:intron |
| GAAAAGGAGGAATCACAGAA+GGG | 0.605582 | 3_1:-65643415 | Msa0368780:CDS |
| CGATGAAGATGATCTTAAGG+AGG | 0.606898 | 3_1:-65643207 | Msa0368780:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3_1:-65643361 | Msa0368780:CDS |
| TGCCATGTGCCATGTCCACG+TGG | 0.619699 | 3_1:-65645283 | Msa0368780:five_prime_UTR |
| AATATGTAATAATGTGACAA+TGG | 0.622860 | 3_1:+65644075 | None:intergenic |
| CCGTTTCTTAGTTCCCACAC+AGG | 0.623175 | 3_1:+65641219 | None:intergenic |
| TGGAACTTAAAGATGCAAGA+TGG | 0.627322 | 3_1:+65641051 | None:intergenic |
| CTGTATATATGGGAGAAGGA+TGG | 0.631132 | 3_1:-65641904 | Msa0368780:CDS |
| ACAAACATGCTTACCTGTGT+GGG | 0.631770 | 3_1:-65641232 | Msa0368780:CDS |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.638010 | 3_1:+65645062 | None:intergenic |
| TGAATATGACATGTCTGAGA+AGG | 0.639315 | 3_1:-65641268 | Msa0368780:CDS |
| GGACCTGTTTGGGACCCACG+TGG | 0.651146 | 3_1:+65645268 | None:intergenic |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3_1:-65643385 | Msa0368780:CDS |
| GGTGATGACACTTGGCCAAG+AGG | 0.656047 | 3_1:+65641072 | None:intergenic |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3_1:-65643090 | Msa0368780:CDS |
| GACAAACATGCTTACCTGTG+TGG | 0.665048 | 3_1:-65641233 | Msa0368780:CDS |
| CCAGTGGAAGGTAAAAGAGG+AGG | 0.668421 | 3_1:+65644870 | None:intergenic |
| CCTGAAGATCAGGAGTAAGG+TGG | 0.674793 | 3_1:+65643708 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3_1:-65642158 | Msa0368780:CDS |
| CATGCTGGGAAGCCTAAAGG+TGG | 0.677747 | 3_1:-65643113 | Msa0368780:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3_1:-65642552 | Msa0368780:CDS |
| GCCATGTGCCATGTCCACGT+GGG | 0.683301 | 3_1:-65645282 | Msa0368780:five_prime_UTR |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3_1:-65643358 | Msa0368780:CDS |
| GTAAAAGAGGATTACCCCAG+TGG | 0.701192 | 3_1:+65644854 | None:intergenic |
| ATCATCGAAGCACTTCAGAG+AGG | 0.734048 | 3_1:-65643991 | Msa0368780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAGATAAATCAATTT+TGG | + | chr3_1:65641967-65641986 | None:intergenic | 10.0% |
| !! | TAAAATTCAATGAAATACTA+AGG | + | chr3_1:65640950-65640969 | None:intergenic | 15.0% |
| !! | TTGTAACTCATAATATATAT+TGG | - | chr3_1:65641527-65641546 | Msa0368780:intron | 15.0% |
| !! | TGTAACTCATAATATATATT+GGG | - | chr3_1:65641528-65641547 | Msa0368780:intron | 15.0% |
| !! | TTTGATTATGAGTTATTAAA+CGG | + | chr3_1:65643509-65643528 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | - | chr3_1:65643808-65643827 | Msa0368780:CDS | 15.0% |
| !! | CAAATTATAATCCATTAATT+GGG | - | chr3_1:65643809-65643828 | Msa0368780:CDS | 15.0% |
| !!! | TAAGATTTAAGATGATTTAT+GGG | - | chr3_1:65644506-65644525 | Msa0368780:intron | 15.0% |
| !! | TCAAATAAAATAATTCATAC+AGG | + | chr3_1:65644532-65644551 | None:intergenic | 15.0% |
| !!! | TAATTTTTTATGGAAAAATG+TGG | + | chr3_1:65645445-65645464 | None:intergenic | 15.0% |
| !!! | GTCATGAGTTAATTATTTTT+TGG | + | chr3_1:65640989-65641008 | None:intergenic | 20.0% |
| !!! | AATTCTGAAGAAATATTGTT+GGG | + | chr3_1:65641077-65641096 | None:intergenic | 20.0% |
| !!! | AAATTCTGAAGAAATATTGT+TGG | + | chr3_1:65641078-65641097 | None:intergenic | 20.0% |
| !!! | GAATTTTTTGTGCTTATTAT+AGG | - | chr3_1:65641092-65641111 | Msa0368780:three_prime_UTR | 20.0% |
| !!! | ATTTAATTTAATAGCCAACA+AGG | + | chr3_1:65641492-65641511 | None:intergenic | 20.0% |
| !! | TCAACTCTATAAATTATGTT+TGG | + | chr3_1:65641991-65642010 | None:intergenic | 20.0% |
| !!! | GTAATTTTTATGAACTATGT+TGG | - | chr3_1:65642152-65642171 | Msa0368780:CDS | 20.0% |
| !! | AATATGTAATAATGTGACAA+TGG | + | chr3_1:65642249-65642268 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | - | chr3_1:65643020-65643039 | Msa0368780:CDS | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | + | chr3_1:65643436-65643455 | None:intergenic | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | + | chr3_1:65643806-65643825 | None:intergenic | 20.0% |
| !!! | ATGATATATTATTTTTGCTG+TGG | - | chr3_1:65644095-65644114 | Msa0368780:CDS | 20.0% |
| !!! | TGATATATTATTTTTGCTGT+GGG | - | chr3_1:65644096-65644115 | Msa0368780:CDS | 20.0% |
| !!! | CTAAGATTTAAGATGATTTA+TGG | - | chr3_1:65644505-65644524 | Msa0368780:intron | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | + | chr3_1:65644933-65644952 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | + | chr3_1:65644934-65644953 | None:intergenic | 20.0% |
| !! | CATGATAATAGATAATAAAG+TGG | - | chr3_1:65645330-65645349 | Msa0368780:five_prime_UTR | 20.0% |
| ! | ATACATGCTATTAAAGGATT+TGG | - | chr3_1:65640904-65640923 | Msa0368780:intron | 25.0% |
| !!! | TTTGTTTGTGTTTTTTCACA+CGG | + | chr3_1:65641189-65641208 | None:intergenic | 25.0% |
| ! | CATGTAAAATGGTTTATGTT+TGG | + | chr3_1:65641714-65641733 | None:intergenic | 25.0% |
| ! | GAGTTACATTACATGTAAAA+TGG | + | chr3_1:65641725-65641744 | None:intergenic | 25.0% |
| !! | TAGATAAAGTGATTTGTGTT+TGG | - | chr3_1:65641835-65641854 | Msa0368780:intron | 25.0% |
| !!! | AGAATCAATTCTAGAATCAA+AGG | - | chr3_1:65641901-65641920 | Msa0368780:CDS | 25.0% |
| ! | AGTCATAATTCATATCTAAC+TGG | - | chr3_1:65642273-65642292 | Msa0368780:intron | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | + | chr3_1:65642434-65642453 | None:intergenic | 25.0% |
| ! | GTTGTCATTAGTAAAATACA+TGG | + | chr3_1:65642474-65642493 | None:intergenic | 25.0% |
| !! | TAACCATCTAAAATTTGAAC+GGG | + | chr3_1:65642749-65642768 | None:intergenic | 25.0% |
| !! | GTAACCATCTAAAATTTGAA+CGG | + | chr3_1:65642750-65642769 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTTTAAGTGAATC+AGG | + | chr3_1:65642834-65642853 | None:intergenic | 25.0% |
| !! | TCTAATTTTGTATGTGAGAT+TGG | - | chr3_1:65643046-65643065 | Msa0368780:CDS | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | - | chr3_1:65643386-65643405 | Msa0368780:CDS | 25.0% |
| !! | TTCAATCCTTTTATTGTTAC+CGG | - | chr3_1:65643414-65643433 | Msa0368780:CDS | 25.0% |
| ! | TTTAATCCGGTAACAATAAA+AGG | + | chr3_1:65643423-65643442 | None:intergenic | 25.0% |
| ! | ATGAGATAAATATTTGTCCT+TGG | - | chr3_1:65643448-65643467 | Msa0368780:CDS | 25.0% |
| ! | TTTCCAACTTGACAAAATAA+CGG | - | chr3_1:65643545-65643564 | Msa0368780:CDS | 25.0% |
| !! | TTAATGGACGAAAATGATAT+CGG | - | chr3_1:65643594-65643613 | Msa0368780:intron | 25.0% |
| ! | CATTTATATTCAATCAGCTT+TGG | - | chr3_1:65643657-65643676 | Msa0368780:intron | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | - | chr3_1:65643812-65643831 | Msa0368780:intron | 25.0% |
| ! | GGCTACTAATTGAAAATTTA+GGG | - | chr3_1:65643932-65643951 | Msa0368780:CDS | 25.0% |
| !! | TTTTGTCTTGAATTTCTCTT+TGG | - | chr3_1:65643999-65644018 | Msa0368780:CDS | 25.0% |
| ! | AGACTTGATTATAGTTAACA+AGG | - | chr3_1:65644365-65644384 | Msa0368780:intron | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | - | chr3_1:65644391-65644410 | Msa0368780:intron | 25.0% |
| ! | TAATTAGGTCACTGTATATA+TGG | - | chr3_1:65644406-65644425 | Msa0368780:intron | 25.0% |
| ! | AATTAGGTCACTGTATATAT+GGG | - | chr3_1:65644407-65644426 | Msa0368780:intron | 25.0% |
| ! | AATATATGGATGCTATAACT+TGG | + | chr3_1:65644790-65644809 | None:intergenic | 25.0% |
| ! | GGAAGAGTTTGAAAAATATA+TGG | + | chr3_1:65644804-65644823 | None:intergenic | 25.0% |
| ! | AATAAGTGATAACTTCTCTT+CGG | - | chr3_1:65644848-65644867 | Msa0368780:intron | 25.0% |
| ! | TAATTGATAAACTCTTATGC+AGG | - | chr3_1:65644891-65644910 | Msa0368780:CDS | 25.0% |
| GCAATCATACATGCTATTAA+AGG | - | chr3_1:65640898-65640917 | Msa0368780:intron | 30.0% | |
| ! | ATGTTACTTCATTCAATCCA+AGG | - | chr3_1:65641014-65641033 | Msa0368780:three_prime_UTR | 30.0% |
| ! | GTAGACAAAATTGGTTTAAG+AGG | - | chr3_1:65641616-65641635 | Msa0368780:intron | 30.0% |
| !!! | CTCACTTTTTAGTGTATGTT+TGG | - | chr3_1:65641742-65641761 | Msa0368780:intron | 30.0% |
| !! | ATCTACATCTCACTTTTAGT+CGG | + | chr3_1:65641820-65641839 | None:intergenic | 30.0% |
| AATCAAAGGCTACAAATAGT+AGG | - | chr3_1:65641915-65641934 | Msa0368780:intron | 30.0% | |
| !! | TTATAGAGTTGAGTTGCTTT+TGG | - | chr3_1:65641999-65642018 | Msa0368780:intron | 30.0% |
| ACAATGGTAAACTCATATCT+TGG | + | chr3_1:65642233-65642252 | None:intergenic | 30.0% | |
| GAGTGATTGAATTGGATATA+TGG | - | chr3_1:65642358-65642377 | Msa0368780:intron | 30.0% | |
| ATGAATTCTCGTCAAATTGT+TGG | + | chr3_1:65642451-65642470 | None:intergenic | 30.0% | |
| ACAAAATGATGCAATCTTAC+AGG | - | chr3_1:65642492-65642511 | Msa0368780:CDS | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | - | chr3_1:65642541-65642560 | Msa0368780:CDS | 30.0% | |
| ! | TCTTCTAGTGTTATTACAAC+CGG | + | chr3_1:65642593-65642612 | None:intergenic | 30.0% |
| ! | AACCATCTAAAATTTGAACG+GGG | + | chr3_1:65642748-65642767 | None:intergenic | 30.0% |
| TAGATGGTTACTCAAACATT+TGG | - | chr3_1:65642759-65642778 | Msa0368780:intron | 30.0% | |
| CACCTGATTCACTTAAAAAA+AGG | - | chr3_1:65642829-65642848 | Msa0368780:intron | 30.0% | |
| AGCTAAAGAAGAAAAGGAAA+AGG | - | chr3_1:65642890-65642909 | Msa0368780:intron | 30.0% | |
| TAAAGAAGAAAAGGAAAAGG+AGG | - | chr3_1:65642893-65642912 | Msa0368780:intron | 30.0% | |
| ! | ATTTTGTATGTGAGATTGGT+TGG | - | chr3_1:65643050-65643069 | Msa0368780:CDS | 30.0% |
| TTCTATCTTTAGCAAAACAG+TGG | - | chr3_1:65643088-65643107 | Msa0368780:CDS | 30.0% | |
| CATATGGAAAAGAAATTGTC+AGG | - | chr3_1:65643314-65643333 | Msa0368780:intron | 30.0% | |
| TAAATATTTGTCCTTGGCAA+TGG | - | chr3_1:65643454-65643473 | Msa0368780:CDS | 30.0% | |
| !! | TTTCCGTTATTTTGTCAAGT+TGG | + | chr3_1:65643551-65643570 | None:intergenic | 30.0% |
| TATATAACAAGAAACCTGTG+AGG | - | chr3_1:65643901-65643920 | Msa0368780:intron | 30.0% | |
| CGGCTACTAATTGAAAATTT+AGG | - | chr3_1:65643931-65643950 | Msa0368780:CDS | 30.0% | |
| !!! | TATATTATTTTTGCTGTGGG+TGG | - | chr3_1:65644099-65644118 | Msa0368780:CDS | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | + | chr3_1:65644208-65644227 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | - | chr3_1:65644205-65644224 | Msa0368780:intron | 30.0% |
| ! | ACCTTCAAAGTAGTTTTTGA+TGG | + | chr3_1:65644268-65644287 | None:intergenic | 30.0% |
| ! | TTTGAGTAGTGACTTTTACA+AGG | - | chr3_1:65644309-65644328 | Msa0368780:intron | 30.0% |
| ! | TTGAGTAGTGACTTTTACAA+GGG | - | chr3_1:65644310-65644329 | Msa0368780:intron | 30.0% |
| ATTAAGCTGAAAACAGCTTA+TGG | + | chr3_1:65644621-65644640 | None:intergenic | 30.0% | |
| TAACTTGGAACATAACTGTT+TGG | + | chr3_1:65644775-65644794 | None:intergenic | 30.0% | |
| TTCATATCTAATAGACTGCA+AGG | + | chr3_1:65644825-65644844 | None:intergenic | 30.0% | |
| CAAAGTCAACAGATAATAGT+TGG | - | chr3_1:65644956-65644975 | Msa0368780:CDS | 30.0% | |
| GTTTATCTTAAATACCCTCT+TGG | - | chr3_1:65645234-65645253 | Msa0368780:five_prime_UTR | 30.0% | |
| ACGAGTACAAATATGTGTTA+TGG | + | chr3_1:65645293-65645312 | None:intergenic | 30.0% | |
| AAATCATGCTTGGAAAGTTA+AGG | + | chr3_1:65645362-65645381 | None:intergenic | 30.0% | |
| TGTCAAATGTAAATCATGCT+TGG | + | chr3_1:65645372-65645391 | None:intergenic | 30.0% | |
| AATATTGTTGGGACCTGTTT+GGG | + | chr3_1:65641066-65641085 | None:intergenic | 35.0% | |
| AAATATTGTTGGGACCTGTT+TGG | + | chr3_1:65641067-65641086 | None:intergenic | 35.0% | |
| AAGATCTCTACGATCAATGA+TGG | + | chr3_1:65641389-65641408 | None:intergenic | 35.0% | |
| ! | GTAATCCTCTTTTACCTTGT+TGG | - | chr3_1:65641475-65641494 | Msa0368780:intron | 35.0% |
| AATAGCCAACAAGGTAAAAG+AGG | + | chr3_1:65641483-65641502 | None:intergenic | 35.0% | |
| !! | GCACTTGAAAAGCACTTATA+AGG | - | chr3_1:65642021-65642040 | Msa0368780:intron | 35.0% |
| AGGTGTTAGAGTGATTGAAT+TGG | - | chr3_1:65642350-65642369 | Msa0368780:intron | 35.0% | |
| TATATGGCCTAATGACTCTA+AGG | - | chr3_1:65642374-65642393 | Msa0368780:intron | 35.0% | |
| ACATCATCCTTAGAGTCATT+AGG | + | chr3_1:65642384-65642403 | None:intergenic | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | + | chr3_1:65642413-65642432 | None:intergenic | 35.0% | |
| AAACATTTGATAAGTGGCAC+AGG | + | chr3_1:65642530-65642549 | None:intergenic | 35.0% | |
| GACGTCAAACATTTGATAAG+TGG | + | chr3_1:65642536-65642555 | None:intergenic | 35.0% | |
| AAATTCCTTCAAGGTTTCTG+AGG | + | chr3_1:65642805-65642824 | None:intergenic | 35.0% | |
| AGGTGAAAGAAATTCCTTCA+AGG | + | chr3_1:65642814-65642833 | None:intergenic | 35.0% | |
| !! | CCTTTTCTTCTTTAGCTTCA+AGG | + | chr3_1:65642887-65642906 | None:intergenic | 35.0% |
| CCTTGAAGCTAAAGAAGAAA+AGG | - | chr3_1:65642884-65642903 | Msa0368780:intron | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | - | chr3_1:65642935-65642954 | Msa0368780:intron | 35.0% | |
| TGTCGATGAAGATGATCTTA+AGG | - | chr3_1:65643111-65643130 | Msa0368780:CDS | 35.0% | |
| ! | TGTAGTCATCTGATGCATTT+TGG | + | chr3_1:65643171-65643190 | None:intergenic | 35.0% |
| ! | GCTTAATTGCTATTCATGCT+GGG | - | chr3_1:65643194-65643213 | Msa0368780:CDS | 35.0% |
| ! | AATAGTGGAATGTCTCAAAG+TGG | - | chr3_1:65643231-65643250 | Msa0368780:intron | 35.0% |
| TCTTGAATTTCTCTTTGGTG+AGG | - | chr3_1:65644004-65644023 | Msa0368780:CDS | 35.0% | |
| AATGTCTTGATACAGCTGAA+AGG | + | chr3_1:65644052-65644071 | None:intergenic | 35.0% | |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | - | chr3_1:65644160-65644179 | Msa0368780:intron | 35.0% |
| GGATCGAAAACCTCATTATT+GGG | + | chr3_1:65644232-65644251 | None:intergenic | 35.0% | |
| AGGATCGAAAACCTCATTAT+TGG | + | chr3_1:65644233-65644252 | None:intergenic | 35.0% | |
| ! | TTTGATGGCAAATGAGCTTT+AGG | + | chr3_1:65644253-65644272 | None:intergenic | 35.0% |
| GCCATCAAAAACTACTTTGA+AGG | - | chr3_1:65644264-65644283 | Msa0368780:intron | 35.0% | |
| ! | CAAAAACTACTTTGAAGGTG+AGG | - | chr3_1:65644269-65644288 | Msa0368780:intron | 35.0% |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | - | chr3_1:65644640-65644659 | Msa0368780:intron | 35.0% |
| AACCTATCTTAGAGAGCTTA+TGG | + | chr3_1:65644645-65644664 | None:intergenic | 35.0% | |
| ! | ACGAAAACAGCTTTTAAGCA+AGG | - | chr3_1:65644665-65644684 | Msa0368780:intron | 35.0% |
| TGATAAACTCTTATGCAGGT+TGG | - | chr3_1:65644895-65644914 | Msa0368780:CDS | 35.0% | |
| ATAATAGTTGGTTGCCTTCT+TGG | - | chr3_1:65644968-65644987 | Msa0368780:CDS | 35.0% | |
| TCAAATACCTCATTCCAAGA+AGG | + | chr3_1:65644985-65645004 | None:intergenic | 35.0% | |
| TGAATATGACATGTCTGAGA+AGG | - | chr3_1:65645053-65645072 | Msa0368780:CDS | 35.0% | |
| ! | ATGTCTGAGAAGGATGATTT+TGG | - | chr3_1:65645063-65645082 | Msa0368780:CDS | 35.0% |
| TGTTGTATTTATCTCCTTCG+CGG | + | chr3_1:65645152-65645171 | None:intergenic | 35.0% | |
| AGCTTAGAAGTTTAGCTACT+AGG | - | chr3_1:65645212-65645231 | Msa0368780:five_prime_UTR | 35.0% | |
| TGGAACTTAAAGATGCAAGA+TGG | + | chr3_1:65645273-65645292 | None:intergenic | 35.0% | |
| ! | GACAATCAAGAGTCTTTTAG+TGG | - | chr3_1:65645388-65645407 | Msa0368780:five_prime_UTR | 35.0% |
| TGGTAAAGCTCCTTTATCTC+CGG | + | chr3_1:65641265-65641284 | None:intergenic | 40.0% | |
| CGAAACGCAGAAACAAACAT+AGG | + | chr3_1:65641595-65641614 | None:intergenic | 40.0% | |
| ! | GCGTTTCGAGTAGACAAAAT+TGG | - | chr3_1:65641607-65641626 | Msa0368780:intron | 40.0% |
| !! | GTGTATGTTTGGTTCTGCTT+TGG | - | chr3_1:65641753-65641772 | Msa0368780:intron | 40.0% |
| TCAACACTCAAGTGCATGTT+TGG | + | chr3_1:65642111-65642130 | None:intergenic | 40.0% | |
| ACTATGTTGGTGTGCGATAA+TGG | - | chr3_1:65642165-65642184 | Msa0368780:CDS | 40.0% | |
| !! | TGCTGTTTCTGTGTGATTTC+AGG | - | chr3_1:65642203-65642222 | Msa0368780:intron | 40.0% |
| GATGATGTTGATGTCCTTCA+TGG | - | chr3_1:65642396-65642415 | Msa0368780:intron | 40.0% | |
| ! | AGCCCCGTTCAAATTTTAGA+TGG | - | chr3_1:65642743-65642762 | Msa0368780:intron | 40.0% |
| ! | TTAGCTTCAAGGTACTCCTT+AGG | + | chr3_1:65642876-65642895 | None:intergenic | 40.0% |
| GAAAAGGAGGAATCACAGAA+GGG | - | chr3_1:65642906-65642925 | Msa0368780:intron | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | + | chr3_1:65642936-65642955 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | - | chr3_1:65642934-65642953 | Msa0368780:intron | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | - | chr3_1:65642936-65642955 | Msa0368780:intron | 40.0% | |
| AAAGAAGTCCCTAGTTTGAG+AGG | - | chr3_1:65642960-65642979 | Msa0368780:intron | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | - | chr3_1:65642983-65643002 | Msa0368780:intron | 40.0% | |
| CGATGAAGATGATCTTAAGG+AGG | - | chr3_1:65643114-65643133 | Msa0368780:CDS | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | - | chr3_1:65643117-65643136 | Msa0368780:CDS | 40.0% | |
| ! | CGCTTAATTGCTATTCATGC+TGG | - | chr3_1:65643193-65643212 | Msa0368780:CDS | 40.0% |
| CATTCCACTATTCCACCTTT+AGG | + | chr3_1:65643223-65643242 | None:intergenic | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | + | chr3_1:65643259-65643278 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTGAAACATA+TGG | - | chr3_1:65643298-65643317 | Msa0368780:intron | 40.0% | |
| TTGAATCAAGCCAATGCAAC+AGG | + | chr3_1:65643399-65643418 | None:intergenic | 40.0% | |
| ATGCCATCTAAGAAGACAGT+CGG | + | chr3_1:65643485-65643504 | None:intergenic | 40.0% | |
| TGGACGAAAATGATATCGGA+CGG | - | chr3_1:65643598-65643617 | Msa0368780:intron | 40.0% | |
| !! | CTTTGGAACAAACACATTGC+AGG | - | chr3_1:65643674-65643693 | Msa0368780:intron | 40.0% |
| TTGATCCTCTGATTGTTGAC+AGG | - | chr3_1:65643731-65643750 | Msa0368780:CDS | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | - | chr3_1:65643769-65643788 | Msa0368780:CDS | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | - | chr3_1:65643849-65643868 | Msa0368780:intron | 40.0% | |
| ! | TTTTCAATTAGTAGCCGTGC+TGG | + | chr3_1:65643928-65643947 | None:intergenic | 40.0% |
| ! | AGATCTCTTTGGTTGATGCA+AGG | - | chr3_1:65644142-65644161 | Msa0368780:intron | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | - | chr3_1:65644163-65644182 | Msa0368780:intron | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | - | chr3_1:65644169-65644188 | Msa0368780:intron | 40.0% |
| GAAAACTGGTCCCAATAATG+AGG | - | chr3_1:65644219-65644238 | Msa0368780:intron | 40.0% | |
| CTCAAATCTCAAAGCCGTAA+AGG | + | chr3_1:65644295-65644314 | None:intergenic | 40.0% | |
| GTCTAGAGACACTTGAATGA+CGG | + | chr3_1:65644349-65644368 | None:intergenic | 40.0% | |
| GTCACTGTATATATGGGAGA+AGG | - | chr3_1:65644413-65644432 | Msa0368780:intron | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | - | chr3_1:65644417-65644436 | Msa0368780:intron | 40.0% | |
| ATCTCCAGACTTCTATGCAA+GGG | - | chr3_1:65644478-65644497 | Msa0368780:intron | 40.0% | |
| ! | TCTGAGAAGGATGATTTTGG+TGG | - | chr3_1:65645066-65645085 | Msa0368780:CDS | 40.0% |
| ACAAACATGCTTACCTGTGT+GGG | - | chr3_1:65645089-65645108 | Msa0368780:CDS | 40.0% | |
| GTTGTATTTATCTCCTTCGC+GGG | + | chr3_1:65645151-65645170 | None:intergenic | 40.0% | |
| ACCGAAAAAACCCAGCGTAT+CGG | - | chr3_1:65641231-65641250 | Msa0368780:CDS | 45.0% | |
| !!! | TCCGATACGCTGGGTTTTTT+CGG | + | chr3_1:65641235-65641254 | None:intergenic | 45.0% |
| TAAAGCTCCTTTATCTCCGG+CGG | + | chr3_1:65641262-65641281 | None:intergenic | 45.0% | |
| TACCATCGTTACTCCGATGA+AGG | - | chr3_1:65641280-65641299 | Msa0368780:CDS | 45.0% | |
| CCTCAATCAGAAAGCTTCTG+AGG | + | chr3_1:65641327-65641346 | None:intergenic | 45.0% | |
| CCTCAGAAGCTTTCTGATTG+AGG | - | chr3_1:65641324-65641343 | Msa0368780:CDS | 45.0% | |
| ! | CTCCTCTTTTACCTTCCACT+GGG | - | chr3_1:65641452-65641471 | Msa0368780:intron | 45.0% |
| ! | TCCTCTTTTACCTTCCACTG+GGG | - | chr3_1:65641453-65641472 | Msa0368780:intron | 45.0% |
| GTAAAAGAGGATTACCCCAG+TGG | + | chr3_1:65641470-65641489 | None:intergenic | 45.0% | |
| CAAGTGCATGTTTGGATCTG+CGG | + | chr3_1:65642103-65642122 | None:intergenic | 45.0% | |
| ! | TCTGAAGTGCTTCGATGATG+GGG | + | chr3_1:65642329-65642348 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTCGATGAT+GGG | + | chr3_1:65642330-65642349 | None:intergenic | 45.0% |
| !! | TCTCTGAAGTGCTTCGATGA+TGG | + | chr3_1:65642331-65642350 | None:intergenic | 45.0% |
| ! | ATCATCGAAGCACTTCAGAG+AGG | - | chr3_1:65642330-65642349 | Msa0368780:intron | 45.0% |
| CTTCGTTGCGTCTGAATATC+CGG | - | chr3_1:65642571-65642590 | Msa0368780:CDS | 45.0% | |
| CTAACTAACCTGAGCCACTT+TGG | + | chr3_1:65642639-65642658 | None:intergenic | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTAGT+TGG | - | chr3_1:65642640-65642659 | Msa0368780:intron | 45.0% |
| TCCTACCTCAGAAACCTTGA+AGG | - | chr3_1:65642797-65642816 | Msa0368780:intron | 45.0% | |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | + | chr3_1:65642801-65642820 | None:intergenic | 45.0% |
| GGAAAAGGAGGAATCACAGA+AGG | - | chr3_1:65642905-65642924 | Msa0368780:intron | 45.0% | |
| TCACAGAAGGGAAAGCCTTT+AGG | - | chr3_1:65642918-65642937 | Msa0368780:intron | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | + | chr3_1:65642971-65642990 | None:intergenic | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | + | chr3_1:65642972-65642991 | None:intergenic | 45.0% | |
| AGATTCCGATGAAGCGGAAA+AGG | - | chr3_1:65643141-65643160 | Msa0368780:CDS | 45.0% | |
| ATTCATGCTGGGAAGCCTAA+AGG | - | chr3_1:65643205-65643224 | Msa0368780:CDS | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | - | chr3_1:65643216-65643235 | Msa0368780:CDS | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | - | chr3_1:65643282-65643301 | Msa0368780:intron | 45.0% | |
| ! | TCACCGACTGTCTTCTTAGA+TGG | - | chr3_1:65643479-65643498 | Msa0368780:CDS | 45.0% |
| GTGAACCTGTCAACAATCAG+AGG | + | chr3_1:65643739-65643758 | None:intergenic | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | + | chr3_1:65643787-65643806 | None:intergenic | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | + | chr3_1:65643823-65643842 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | - | chr3_1:65643820-65643839 | Msa0368780:intron | 45.0% | |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | - | chr3_1:65644107-65644126 | Msa0368780:intron | 45.0% |
| TGGTTCTTTGGCAGGGTTAT+GGG | - | chr3_1:65644119-65644138 | Msa0368780:intron | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | - | chr3_1:65644131-65644150 | Msa0368780:intron | 45.0% | |
| AACAAAACCGCATCCTCCAT+TGG | + | chr3_1:65644179-65644198 | None:intergenic | 45.0% | |
| ! | CTTTGAAGGTGAGGCCTTTA+CGG | - | chr3_1:65644278-65644297 | Msa0368780:intron | 45.0% |
| CATCTCCAGACTTCTATGCA+AGG | - | chr3_1:65644477-65644496 | Msa0368780:intron | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | + | chr3_1:65644485-65644504 | None:intergenic | 45.0% | |
| ! | CTTATGCAGGTTGGAATTGC+TGG | - | chr3_1:65644904-65644923 | Msa0368780:CDS | 45.0% |
| TTGGTTGCCTTCTTGGAATG+AGG | - | chr3_1:65644975-65644994 | Msa0368780:CDS | 45.0% | |
| TGAATTCCCGCTTTCTGTTC+CGG | - | chr3_1:65645002-65645021 | Msa0368780:CDS | 45.0% | |
| GACAAACATGCTTACCTGTG+TGG | - | chr3_1:65645088-65645107 | Msa0368780:CDS | 45.0% | |
| CCTGTGTGGGAACTAAGAAA+CGG | - | chr3_1:65645102-65645121 | Msa0368780:CDS | 45.0% | |
| ! | TGCAAGATGGTGATGACACT+TGG | + | chr3_1:65645260-65645279 | None:intergenic | 45.0% |
| !! | TATTAAATTAAATTTGTAAA+TGG | - | chr3_1:65641499-65641518 | Msa0368780:intron | 5.0% |
| !! | AGTAATTAAATATTATTTAA+TGG | - | chr3_1:65643578-65643597 | Msa0368780:intron | 5.0% |
| GAAAAAACCCAGCGTATCGG+AGG | - | chr3_1:65641234-65641253 | Msa0368780:CDS | 50.0% | |
| CATCGTTACTCCGATGAAGG+CGG | - | chr3_1:65641283-65641302 | Msa0368780:CDS | 50.0% | |
| ATCGTTACTCCGATGAAGGC+GGG | - | chr3_1:65641284-65641303 | Msa0368780:CDS | 50.0% | |
| AGTCATGATCCCGCCTTCAT+CGG | + | chr3_1:65641296-65641315 | None:intergenic | 50.0% | |
| CCAGTGGAAGGTAAAAGAGG+AGG | + | chr3_1:65641454-65641473 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTACCTTCCAC+TGG | - | chr3_1:65641451-65641470 | Msa0368780:intron | 50.0% |
| ACCCCAGTGGAAGGTAAAAG+AGG | + | chr3_1:65641457-65641476 | None:intergenic | 50.0% | |
| AAGAGGATTACCCCAGTGGA+AGG | + | chr3_1:65641466-65641485 | None:intergenic | 50.0% | |
| TGACGTGTTTGCGTTGCTCT+TGG | - | chr3_1:65641653-65641672 | Msa0368780:intron | 50.0% | |
| GACGTGTTTGCGTTGCTCTT+GGG | - | chr3_1:65641654-65641673 | Msa0368780:intron | 50.0% | |
| ! | CTGAAGTGCTTCGATGATGG+GGG | + | chr3_1:65642328-65642347 | None:intergenic | 50.0% |
| CGGATATTCAGACGCAACGA+AGG | + | chr3_1:65642573-65642592 | None:intergenic | 50.0% | |
| CCTGAAGATCAGGAGTAAGG+TGG | + | chr3_1:65642616-65642635 | None:intergenic | 50.0% | |
| CCACCTTACTCCTGATCTTC+AGG | - | chr3_1:65642613-65642632 | Msa0368780:intron | 50.0% | |
| TGGCCTGAAGATCAGGAGTA+AGG | + | chr3_1:65642619-65642638 | None:intergenic | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | - | chr3_1:65642622-65642641 | Msa0368780:intron | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | - | chr3_1:65642857-65642876 | Msa0368780:intron | 50.0% | |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | + | chr3_1:65642873-65642892 | None:intergenic | 50.0% |
| GAAGTCCCTAGTTTGAGAGG+CGG | - | chr3_1:65642963-65642982 | Msa0368780:intron | 50.0% | |
| GGAGGAAGATTCCGATGAAG+CGG | - | chr3_1:65643135-65643154 | Msa0368780:CDS | 50.0% | |
| AGTCGGTGAAACCATTGCCA+AGG | + | chr3_1:65643468-65643487 | None:intergenic | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | - | chr3_1:65644118-65644137 | Msa0368780:intron | 50.0% | |
| CCGTTTCTTAGTTCCCACAC+AGG | + | chr3_1:65645105-65645124 | None:intergenic | 50.0% | |
| GTTCCATTACATTCCCGCGA+AGG | - | chr3_1:65645135-65645154 | Msa0368780:five_prime_UTR | 50.0% | |
| TCTCCTTCGCGGGAATGTAA+TGG | + | chr3_1:65645141-65645160 | None:intergenic | 50.0% | |
| GTGATGACACTTGGCCAAGA+GGG | + | chr3_1:65645251-65645270 | None:intergenic | 50.0% | |
| GACATGGCACATGGCATCCT+TGG | + | chr3_1:65641034-65641053 | None:intergenic | 55.0% | |
| CGCCTTCATCGGAGTAACGA+TGG | + | chr3_1:65641285-65641304 | None:intergenic | 55.0% | |
| ! | GCCACTTTGGCCTGAAGATC+AGG | + | chr3_1:65642626-65642645 | None:intergenic | 55.0% |
| TCTTCAGGCCAAAGTGGCTC+AGG | - | chr3_1:65642628-65642647 | Msa0368780:intron | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | + | chr3_1:65642868-65642887 | None:intergenic | 55.0% |
| ! | GCGTGCCTTTTCCGCTTCAT+CGG | + | chr3_1:65643149-65643168 | None:intergenic | 55.0% |
| CATGCTGGGAAGCCTAAAGG+TGG | - | chr3_1:65643208-65643227 | Msa0368780:CDS | 55.0% | |
| GTGGATGCATGGAGCTCAGA+TGG | - | chr3_1:65643831-65643850 | Msa0368780:intron | 55.0% | |
| GAAACCTGTGAGGTCCAGCA+CGG | - | chr3_1:65643911-65643930 | Msa0368780:intron | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | - | chr3_1:65644112-65644131 | Msa0368780:intron | 55.0% | |
| GGTGATGACACTTGGCCAAG+AGG | + | chr3_1:65645252-65645271 | None:intergenic | 55.0% | |
| TGCCATGTGCCATGTCCACG+TGG | - | chr3_1:65641038-65641057 | Msa0368780:three_prime_UTR | 60.0% | |
| GCCATGTGCCATGTCCACGT+GGG | - | chr3_1:65641039-65641058 | Msa0368780:three_prime_UTR | 60.0% | |
| ACCCACGTGGACATGGCACA+TGG | + | chr3_1:65641043-65641062 | None:intergenic | 60.0% | |
| ! | GTTTGGGACCCACGTGGACA+TGG | + | chr3_1:65641050-65641069 | None:intergenic | 60.0% |
| TGTCCACGTGGGTCCCAAAC+AGG | - | chr3_1:65641050-65641069 | Msa0368780:three_prime_UTR | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | - | chr3_1:65644111-65644130 | Msa0368780:intron | 60.0% | |
| CCAGCTCCGGAACAGAAAGC+GGG | + | chr3_1:65645011-65645030 | None:intergenic | 60.0% | |
| GCCAGCTCCGGAACAGAAAG+CGG | + | chr3_1:65645012-65645031 | None:intergenic | 60.0% | |
| ! | GGACCTGTTTGGGACCCACG+TGG | + | chr3_1:65641056-65641075 | None:intergenic | 65.0% |
| !! | GGAGGCACCGCCGGAGATAA+AGG | - | chr3_1:65641252-65641271 | Msa0368780:CDS | 65.0% |
| GTAGCCGTGCTGGACCTCAC+AGG | + | chr3_1:65643918-65643937 | None:intergenic | 65.0% | |
| CCCGCTTTCTGTTCCGGAGC+TGG | - | chr3_1:65645008-65645027 | Msa0368780:CDS | 65.0% | |
| ATGCGAAGCAGCGCCAGCTC+CGG | + | chr3_1:65645024-65645043 | None:intergenic | 65.0% | |
| GGCGGTGCCTCCGATACGCT+GGG | + | chr3_1:65641244-65641263 | None:intergenic | 70.0% | |
| !! | CAGCGTATCGGAGGCACCGC+CGG | - | chr3_1:65641243-65641262 | Msa0368780:CDS | 70.0% |
| CGGCGGTGCCTCCGATACGC+TGG | + | chr3_1:65641245-65641264 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65640879 | 65645464 | 65640879 | ID=Msa0368780;Name=Msa0368780 |
| chr3_1 | mRNA | 65640879 | 65645464 | 65640879 | ID=Msa0368780-mRNA-1;Parent=Msa0368780;Name=Msa0368780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=341|1|1|1|0.88|0.8|10|236|572 |
| chr3_1 | exon | 65640879 | 65640906 | 65640879 | ID=Msa0368780-mRNA-1:exon:13226;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65640929 | 65641430 | 65640929 | ID=Msa0368780-mRNA-1:exon:13225;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65641844 | 65641930 | 65641844 | ID=Msa0368780-mRNA-1:exon:13224;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65642058 | 65642210 | 65642058 | ID=Msa0368780-mRNA-1:exon:13223;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65642473 | 65642590 | 65642473 | ID=Msa0368780-mRNA-1:exon:13222;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65643008 | 65643243 | 65643008 | ID=Msa0368780-mRNA-1:exon:13221;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65643339 | 65643581 | 65643339 | ID=Msa0368780-mRNA-1:exon:13220;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65643694 | 65643829 | 65643694 | ID=Msa0368780-mRNA-1:exon:13219;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65643922 | 65644118 | 65643922 | ID=Msa0368780-mRNA-1:exon:13218;Parent=Msa0368780-mRNA-1 |
| chr3_1 | exon | 65644869 | 65645464 | 65644869 | ID=Msa0368780-mRNA-1:exon:13217;Parent=Msa0368780-mRNA-1 |
| chr3_1 | five_prime_UTR | 65645124 | 65645464 | 65645124 | ID=Msa0368780-mRNA-1:five_prime_utr;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65644869 | 65645123 | 65644869 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65643922 | 65644118 | 65643922 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65643694 | 65643829 | 65643694 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65643339 | 65643581 | 65643339 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65643008 | 65643243 | 65643008 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65642473 | 65642590 | 65642473 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65642058 | 65642210 | 65642058 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65641844 | 65641930 | 65641844 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | CDS | 65641137 | 65641430 | 65641137 | ID=Msa0368780-mRNA-1:cds;Parent=Msa0368780-mRNA-1 |
| chr3_1 | three_prime_UTR | 65640929 | 65641136 | 65640929 | ID=Msa0368780-mRNA-1:three_prime_utr;Parent=Msa0368780-mRNA-1 |
| chr3_1 | three_prime_UTR | 65640879 | 65640906 | 65640879 | ID=Msa0368780-mRNA-1:three_prime_utr;Parent=Msa0368780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
