Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508830 | XP_003600886.1 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508830 | sp|Q9SRM5|CPR49_ARATH | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.43e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508830 | G7JB85 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416590 | Msa0508830 | 0.819858 | 9.311864e-53 | -8.615850e-47 |
| Msa0277180 | Msa0508830 | 0.817411 | 3.343712e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508830 | MtrunA17_Chr3g0113401 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Msa0508830 | MtrunA17_Chr4g0006731 | 64.394 | 264 | 86 | 1 | 1 | 264 | 1 | 256 | 4.87e-125 | 356 |
| Msa0508830 | MtrunA17_Chr7g0242451 | 60.227 | 264 | 94 | 3 | 1 | 264 | 1 | 253 | 1.55e-115 | 332 |
| Msa0508830 | MtrunA17_Chr7g0242401 | 59.770 | 261 | 95 | 3 | 3 | 263 | 30 | 280 | 4.91e-112 | 323 |
| Msa0508830 | MtrunA17_Chr7g0242431 | 58.238 | 261 | 99 | 3 | 3 | 263 | 29 | 279 | 6.81e-109 | 316 |
| Msa0508830 | MtrunA17_Chr7g0242461 | 56.061 | 264 | 106 | 2 | 1 | 264 | 1 | 254 | 1.11e-107 | 311 |
| Msa0508830 | MtrunA17_Chr7g0242411 | 56.977 | 258 | 96 | 4 | 6 | 263 | 2 | 244 | 5.94e-102 | 297 |
| Msa0508830 | MtrunA17_Chr7g0242391 | 51.331 | 263 | 115 | 4 | 6 | 264 | 2 | 255 | 8.57e-93 | 274 |
| Msa0508830 | MtrunA17_Chr2g0283411 | 35.135 | 222 | 124 | 6 | 6 | 217 | 4 | 215 | 6.47e-40 | 138 |
| Msa0508830 | MtrunA17_Chr2g0283421 | 35.160 | 219 | 128 | 3 | 5 | 217 | 4 | 214 | 1.87e-39 | 137 |
| Msa0508830 | MtrunA17_Chr7g0242441 | 34.902 | 255 | 94 | 6 | 6 | 260 | 3 | 185 | 1.91e-37 | 130 |
| Msa0508830 | MtrunA17_Chr4g0059001 | 33.333 | 225 | 128 | 5 | 24 | 240 | 47 | 257 | 1.99e-31 | 117 |
| Msa0508830 | MtrunA17_Chr2g0283391 | 30.601 | 183 | 100 | 5 | 41 | 217 | 1 | 162 | 1.80e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508830 | AT3G11210.1 | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.48e-139 | 392 |
| Msa0508830 | AT2G38180.1 | 59.664 | 238 | 82 | 3 | 1 | 236 | 1 | 226 | 2.31e-99 | 293 |
| Msa0508830 | AT5G62930.1 | 36.667 | 240 | 135 | 4 | 6 | 240 | 2 | 229 | 5.94e-52 | 170 |
| Msa0508830 | AT5G62930.2 | 36.667 | 240 | 135 | 4 | 6 | 240 | 28 | 255 | 1.50e-51 | 169 |
| Msa0508830 | AT5G45920.1 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0508830 | AT5G45920.4 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0508830 | AT5G45920.2 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0508830 | AT5G45920.3 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0508830 | AT5G62930.3 | 30.818 | 159 | 97 | 2 | 65 | 218 | 3 | 153 | 4.90e-25 | 98.6 |
Find 71 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3_4:+57070091 | Msa0508830:CDS |
| TTAAATGTCAAGAAACATTT+TGG | 0.201471 | 3_4:+57067740 | Msa0508830:five_prime_UTR |
| TTATCATGTATTTGTTATTC+AGG | 0.220370 | 3_4:+57072134 | Msa0508830:three_prime_UTR |
| AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3_4:+57070192 | Msa0508830:CDS |
| TGCTTCCCTCGGCTGCTAAA+TGG | 0.258371 | 3_4:-57071740 | None:intergenic |
| AACATTATGGTTGGTTTGTT+AGG | 0.273179 | 3_4:-57067803 | None:intergenic |
| ACCAACCATAATGTTTGATT+TGG | 0.292289 | 3_4:+57067811 | Msa0508830:five_prime_UTR |
| CGGTTTGGCGCTGCCTGCTT+TGG | 0.298101 | 3_4:+57067893 | Msa0508830:five_prime_UTR |
| AAATACCAAATCAAACATTA+TGG | 0.309912 | 3_4:-57067816 | None:intergenic |
| CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3_4:+57071923 | Msa0508830:CDS |
| ATTCATCTAAGTTATTATAA+AGG | 0.332921 | 3_4:-57072202 | None:intergenic |
| GTGGAAACTGCTAAAATATA+AGG | 0.360830 | 3_4:-57071961 | None:intergenic |
| AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3_4:+57071776 | Msa0508830:CDS |
| GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3_4:-57069269 | None:intergenic |
| ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3_4:-57069278 | None:intergenic |
| CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3_4:+57068083 | Msa0508830:CDS |
| AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3_4:+57068042 | Msa0508830:CDS |
| TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3_4:+57070124 | Msa0508830:CDS |
| CGTTGACTCTCCACAAGCTT+AGG | 0.409304 | 3_4:+57067867 | Msa0508830:five_prime_UTR |
| CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3_4:+57071151 | Msa0508830:CDS |
| TATCATGTATTTGTTATTCA+GGG | 0.440442 | 3_4:+57072135 | Msa0508830:three_prime_UTR |
| GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3_4:+57070130 | Msa0508830:CDS |
| GTTCAGTGGGATTAGGATGT+TGG | 0.444644 | 3_4:+57071930 | Msa0508830:exon |
| AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3_4:-57068036 | None:intergenic |
| GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3_4:-57068092 | None:intergenic |
| CACAAGCTTAGGAAGCGGTT+TGG | 0.459190 | 3_4:+57067878 | Msa0508830:five_prime_UTR |
| TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3_4:-57071080 | None:intergenic |
| TTCAGTGGGATTAGGATGTT+GGG | 0.461381 | 3_4:+57071931 | Msa0508830:exon |
| ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3_4:+57071805 | Msa0508830:CDS |
| ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3_4:+57071152 | Msa0508830:CDS |
| AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3_4:-57068109 | None:intergenic |
| CAAGACAAAGAGGCAGAAGA+AGG | 0.474860 | 3_4:-57067922 | None:intergenic |
| TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3_4:+57071864 | Msa0508830:CDS |
| AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3_4:+57068084 | Msa0508830:CDS |
| ACCAAATCAAACATTATGGT+TGG | 0.483172 | 3_4:-57067812 | None:intergenic |
| AAGAAGGAAAAGACCAAAGC+AGG | 0.484171 | 3_4:-57067906 | None:intergenic |
| TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3_4:+57068116 | Msa0508830:CDS |
| AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3_4:+57071787 | Msa0508830:CDS |
| CTCTCCACAAGCTTAGGAAG+CGG | 0.522136 | 3_4:+57067873 | Msa0508830:five_prime_UTR |
| ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3_4:+57071102 | Msa0508830:CDS |
| CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3_4:+57068078 | Msa0508830:CDS |
| CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3_4:-57071907 | None:intergenic |
| TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3_4:+57068082 | Msa0508830:CDS |
| TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3_4:-57070163 | None:intergenic |
| ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3_4:-57070125 | None:intergenic |
| ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3_4:+57071865 | Msa0508830:CDS |
| TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3_4:+57070109 | Msa0508830:CDS |
| GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3_4:-57068045 | None:intergenic |
| AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3_4:-57070088 | None:intergenic |
| CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3_4:-57071903 | None:intergenic |
| TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3_4:-57070154 | None:intergenic |
| ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3_4:-57071813 | None:intergenic |
| TGGTATCCATTTAGCAGCCG+AGG | 0.597982 | 3_4:+57071734 | Msa0508830:CDS |
| CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3_4:+57071095 | Msa0508830:CDS |
| ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3_4:+57069225 | Msa0508830:CDS |
| TCTAAATCTATGATGAGTGA+TGG | 0.606771 | 3_4:-57067982 | None:intergenic |
| GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3_4:+57071779 | Msa0508830:CDS |
| TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3_4:+57069229 | Msa0508830:CDS |
| GGTATCCATTTAGCAGCCGA+GGG | 0.630946 | 3_4:+57071735 | Msa0508830:CDS |
| GTACATCATATAACTTACAC+TGG | 0.636627 | 3_4:-57072168 | None:intergenic |
| CAAACCGCTTCCTAAGCTTG+TGG | 0.638098 | 3_4:-57067877 | None:intergenic |
| CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3_4:-57071821 | None:intergenic |
| ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3_4:-57070153 | None:intergenic |
| AGCCGAGGGAAGCAAAATTG+TGG | 0.643278 | 3_4:+57071749 | Msa0508830:CDS |
| ATACGTAAGACAAGACAAAG+AGG | 0.655549 | 3_4:-57067932 | None:intergenic |
| CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3_4:-57069275 | None:intergenic |
| GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3_4:-57068070 | None:intergenic |
| TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3_4:+57069216 | Msa0508830:intron |
| TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3_4:-57071818 | None:intergenic |
| GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3_4:+57071892 | Msa0508830:CDS |
| GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3_4:-57070133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTTTATTTCAAAA+AGG | - | chr3_4:57068274-57068293 | None:intergenic | 10.0% |
| !!! | TTTGAAATAAACAATTATTT+TGG | + | chr3_4:57068275-57068294 | Msa0508830:intron | 10.0% |
| !!! | TTGAAATAAACAATTATTTT+GGG | + | chr3_4:57068276-57068295 | Msa0508830:intron | 10.0% |
| !!! | AATATAATTTTGAAAACTTT+TGG | + | chr3_4:57068349-57068368 | Msa0508830:intron | 10.0% |
| !!! | ATATAATTTTGAAAACTTTT+GGG | + | chr3_4:57068350-57068369 | Msa0508830:intron | 10.0% |
| !!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3_4:57068693-57068712 | Msa0508830:intron | 10.0% |
| !!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3_4:57069051-57069070 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTAAATATGCAT+AGG | + | chr3_4:57069588-57069607 | Msa0508830:intron | 10.0% |
| !!! | TATATTTTTCATCATTATTA+AGG | - | chr3_4:57070742-57070761 | None:intergenic | 10.0% |
| !!! | AAAAATATTGATTTGTTATA+TGG | + | chr3_4:57072003-57072022 | Msa0508830:three_prime_UTR | 10.0% |
| !!! | AAAATACTAGATTAATGTTT+TGG | + | chr3_4:57068219-57068238 | Msa0508830:intron | 15.0% |
| !!! | AAATACTAGATTAATGTTTT+GGG | + | chr3_4:57068220-57068239 | Msa0508830:intron | 15.0% |
| !!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3_4:57068351-57068370 | Msa0508830:intron | 15.0% |
| !!! | AGATTTAAAAAAAAAGTACA+AGG | - | chr3_4:57068530-57068549 | None:intergenic | 15.0% |
| !!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3_4:57068903-57068922 | None:intergenic | 15.0% |
| !! | ATAATTTAATACTCTTACAT+TGG | + | chr3_4:57069054-57069073 | Msa0508830:intron | 15.0% |
| !! | AAAATAAAAATCATATACGA+TGG | - | chr3_4:57069578-57069597 | None:intergenic | 15.0% |
| !! | AATAAAATTGATTAAGAAAG+AGG | - | chr3_4:57071207-57071226 | None:intergenic | 15.0% |
| !! | TTTCTTGTGAAATATATTAA+AGG | + | chr3_4:57071596-57071615 | Msa0508830:intron | 15.0% |
| !!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3_4:57071648-57071667 | Msa0508830:intron | 15.0% |
| !!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3_4:57071649-57071668 | Msa0508830:intron | 15.0% |
| !! | TTTAAAGAAAAACTTAAACA+AGG | - | chr3_4:57071986-57072005 | None:intergenic | 15.0% |
| !! | ATTCATCTAAGTTATTATAA+AGG | - | chr3_4:57072205-57072224 | None:intergenic | 15.0% |
| !!! | TTAAATGTCAAGAAACATTT+TGG | + | chr3_4:57067740-57067759 | Msa0508830:five_prime_UTR | 20.0% |
| !! | AAATACCAAATCAAACATTA+TGG | - | chr3_4:57067819-57067838 | None:intergenic | 20.0% |
| !! | TACTATAAGAAAATCAATCA+TGG | - | chr3_4:57068600-57068619 | None:intergenic | 20.0% |
| !!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3_4:57068610-57068629 | Msa0508830:intron | 20.0% |
| !! | TTATATTTAGCAATTTGAGA+AGG | - | chr3_4:57068731-57068750 | None:intergenic | 20.0% |
| !! | TTCTCAAATTGCTAAATATA+AGG | + | chr3_4:57068730-57068749 | Msa0508830:intron | 20.0% |
| !!! | GATGTAAAATTACTCATTTT+AGG | + | chr3_4:57069197-57069216 | Msa0508830:intron | 20.0% |
| !!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3_4:57070943-57070962 | None:intergenic | 20.0% |
| !!! | TTATCATGTATTTGTTATTC+AGG | + | chr3_4:57072134-57072153 | Msa0508830:three_prime_UTR | 20.0% |
| !!! | TATCATGTATTTGTTATTCA+GGG | + | chr3_4:57072135-57072154 | Msa0508830:three_prime_UTR | 20.0% |
| ! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3_4:57068636-57068655 | Msa0508830:intron | 25.0% |
| ! | CAAATTGCTAAATATAAGGT+TGG | + | chr3_4:57068734-57068753 | Msa0508830:intron | 25.0% |
| ! | AACAAAACAAAATTCACAGT+TGG | - | chr3_4:57068825-57068844 | None:intergenic | 25.0% |
| !!! | TGTGAATTTTGTTTTGTTTG+TGG | + | chr3_4:57068827-57068846 | Msa0508830:intron | 25.0% |
| !! | TATTAATGGAGTATTTGTAC+AGG | - | chr3_4:57069037-57069056 | None:intergenic | 25.0% |
| ! | TTAATACTCTTACATTGGTA+TGG | + | chr3_4:57069059-57069078 | Msa0508830:intron | 25.0% |
| ! | AAGGAAAAAAAATCATGATC+AGG | - | chr3_4:57069118-57069137 | None:intergenic | 25.0% |
| ! | CGTCATCAAAGTTAATATTA+TGG | + | chr3_4:57069148-57069167 | Msa0508830:intron | 25.0% |
| ! | CATCAAAGTTAATATTATGG+AGG | + | chr3_4:57069151-57069170 | Msa0508830:intron | 25.0% |
| ! | AAATTAGGTACAATACCTTT+GGG | - | chr3_4:57069293-57069312 | None:intergenic | 25.0% |
| ! | TAAATTAGGTACAATACCTT+TGG | - | chr3_4:57069294-57069313 | None:intergenic | 25.0% |
| ! | CTTGTATTCAACATGATTTA+TGG | + | chr3_4:57069364-57069383 | Msa0508830:intron | 25.0% |
| !! | TTTCTAAAGACACGATATTA+AGG | + | chr3_4:57069431-57069450 | Msa0508830:intron | 25.0% |
| !!! | ATTAGGCAATTGTTTGTTAT+GGG | - | chr3_4:57069508-57069527 | None:intergenic | 25.0% |
| !!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3_4:57069671-57069690 | None:intergenic | 25.0% |
| ! | GAGATAGTAAGTAAAACATA+TGG | - | chr3_4:57069706-57069725 | None:intergenic | 25.0% |
| !! | TTTTACTTACTATCTCTCTT+AGG | + | chr3_4:57069710-57069729 | Msa0508830:intron | 25.0% |
| ! | TTTACTTACTATCTCTCTTA+GGG | + | chr3_4:57069711-57069730 | Msa0508830:intron | 25.0% |
| ! | GTTGAAATAATCTATGGAAA+CGG | + | chr3_4:57069789-57069808 | Msa0508830:intron | 25.0% |
| !!! | AGCTTGTTTCTATAAGTTTA+AGG | + | chr3_4:57069839-57069858 | Msa0508830:intron | 25.0% |
| ! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3_4:57069974-57069993 | Msa0508830:intron | 25.0% |
| ! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3_4:57069975-57069994 | Msa0508830:intron | 25.0% |
| ! | GTGAGACAAAAATTATTGTA+TGG | - | chr3_4:57070046-57070065 | None:intergenic | 25.0% |
| ! | AAATAAACTATGACAAGAGA+AGG | - | chr3_4:57070091-57070110 | None:intergenic | 25.0% |
| !! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3_4:57070091-57070110 | Msa0508830:CDS | 25.0% |
| ! | ATATATTCCATTACATTGGA+AGG | - | chr3_4:57070349-57070368 | None:intergenic | 25.0% |
| ! | CAAGATATATTCCATTACAT+TGG | - | chr3_4:57070353-57070372 | None:intergenic | 25.0% |
| ! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3_4:57070529-57070548 | Msa0508830:intron | 25.0% |
| ! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3_4:57070576-57070595 | Msa0508830:intron | 25.0% |
| ! | AATACATGGATAATAGTTTG+AGG | + | chr3_4:57070590-57070609 | Msa0508830:intron | 25.0% |
| ! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3_4:57070648-57070667 | Msa0508830:intron | 25.0% |
| !!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3_4:57071030-57071049 | None:intergenic | 25.0% |
| ! | ACTACAAAGTATAGATGATT+GGG | + | chr3_4:57071152-57071171 | Msa0508830:CDS | 25.0% |
| ! | ACTTGATATTTCTTGGTATT+TGG | - | chr3_4:57071233-57071252 | None:intergenic | 25.0% |
| ! | CAAACAATAACTTAGACTAA+AGG | - | chr3_4:57071427-57071446 | None:intergenic | 25.0% |
| !! | GATATCAATTTTGTCTCTTA+CGG | + | chr3_4:57071467-57071486 | Msa0508830:intron | 25.0% |
| !!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3_4:57071645-57071664 | None:intergenic | 25.0% |
| !!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3_4:57071776-57071795 | Msa0508830:CDS | 25.0% |
| ! | AAAGAAAAACTTAAACAAGG+TGG | - | chr3_4:57071983-57072002 | None:intergenic | 25.0% |
| !! | AAACATTTTGGCAAGCATTA+AGG | + | chr3_4:57067752-57067771 | Msa0508830:five_prime_UTR | 30.0% |
| !! | AACATTATGGTTGGTTTGTT+AGG | - | chr3_4:57067806-57067825 | None:intergenic | 30.0% |
| ACCAACCATAATGTTTGATT+TGG | + | chr3_4:57067811-57067830 | Msa0508830:five_prime_UTR | 30.0% | |
| ACCAAATCAAACATTATGGT+TGG | - | chr3_4:57067815-57067834 | None:intergenic | 30.0% | |
| TAAAGGGCTAAAAAGAAAGA+AGG | - | chr3_4:57067958-57067977 | None:intergenic | 30.0% | |
| TCTAAATCTATGATGAGTGA+TGG | - | chr3_4:57067985-57068004 | None:intergenic | 30.0% | |
| AGAATAGATGTCAGAAAGAA+AGG | - | chr3_4:57068112-57068131 | None:intergenic | 30.0% | |
| GTTTATTTCAAAAAGGCAGA+AGG | - | chr3_4:57068267-57068286 | None:intergenic | 30.0% | |
| TTGGGCTATGTTTAAGAAAA+TGG | + | chr3_4:57068294-57068313 | Msa0508830:intron | 30.0% | |
| TGGGCTATGTTTAAGAAAAT+GGG | + | chr3_4:57068295-57068314 | Msa0508830:intron | 30.0% | |
| GAAAGTAGTAACTAGTAGTA+AGG | + | chr3_4:57068373-57068392 | Msa0508830:intron | 30.0% | |
| ! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3_4:57068739-57068758 | Msa0508830:intron | 30.0% |
| ATATTGTTACGAGGATACTA+CGG | + | chr3_4:57069225-57069244 | Msa0508830:CDS | 30.0% | |
| ATGCAGATATCTGCTAAATT+AGG | - | chr3_4:57069308-57069327 | None:intergenic | 30.0% | |
| GTATTCAACATGATTTATGG+TGG | + | chr3_4:57069367-57069386 | Msa0508830:intron | 30.0% | |
| ! | TCGTGTCTTTAGAAATTAAG+CGG | - | chr3_4:57069426-57069445 | None:intergenic | 30.0% |
| TACGCATAGATAAACTTGAT+TGG | - | chr3_4:57069470-57069489 | None:intergenic | 30.0% | |
| ! | GATTAGGCAATTGTTTGTTA+TGG | - | chr3_4:57069509-57069528 | None:intergenic | 30.0% |
| TAGAATAGTATATACGCTAC+CGG | - | chr3_4:57069537-57069556 | None:intergenic | 30.0% | |
| GAGACTGTTGAAATAATCTA+TGG | + | chr3_4:57069783-57069802 | Msa0508830:intron | 30.0% | |
| AACAAGCTGAAAACAGTTTA+TGG | - | chr3_4:57069827-57069846 | None:intergenic | 30.0% | |
| CAAAAATTATTGTATGGTGC+AGG | - | chr3_4:57070040-57070059 | None:intergenic | 30.0% | |
| ! | TAATTTTTGTCTCACTTCAC+AGG | + | chr3_4:57070051-57070070 | Msa0508830:intron | 30.0% |
| !!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3_4:57070094-57070113 | Msa0508830:CDS | 30.0% |
| TTTGCGATATATTCTTCAAG+TGG | - | chr3_4:57070166-57070185 | None:intergenic | 30.0% | |
| AAAGATTCTCGTTCATATTC+AGG | + | chr3_4:57070192-57070211 | Msa0508830:CDS | 30.0% | |
| AGATATCTATCTCCAATACT+TGG | - | chr3_4:57070265-57070284 | None:intergenic | 30.0% | |
| TGTTAAACCTTCCAATGTAA+TGG | + | chr3_4:57070339-57070358 | Msa0508830:intron | 30.0% | |
| GAATATATCTTGTCTTACCT+GGG | + | chr3_4:57070361-57070380 | Msa0508830:intron | 30.0% | |
| ! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3_4:57070570-57070589 | None:intergenic | 30.0% |
| ! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3_4:57070571-57070590 | None:intergenic | 30.0% |
| AGTGAAAAATGACATGTTGT+AGG | + | chr3_4:57070689-57070708 | Msa0508830:intron | 30.0% | |
| !! | AAAATATGTTTTAGGCTACC+TGG | - | chr3_4:57070935-57070954 | None:intergenic | 30.0% |
| CACTACAAAGTATAGATGAT+TGG | + | chr3_4:57071151-57071170 | Msa0508830:CDS | 30.0% | |
| ! | GTATGTCACTTGATATTTCT+TGG | - | chr3_4:57071240-57071259 | None:intergenic | 30.0% |
| AGAAAAGTTAGTGAAGGATT+TGG | - | chr3_4:57071284-57071303 | None:intergenic | 30.0% | |
| TACTTGAGAAAAGTTAGTGA+AGG | - | chr3_4:57071290-57071309 | None:intergenic | 30.0% | |
| TAACCTTAAAATCGTCTTTC+CGG | - | chr3_4:57071513-57071532 | None:intergenic | 30.0% | |
| AAGGTTACTTCAATGATGTT+AGG | + | chr3_4:57071526-57071545 | Msa0508830:intron | 30.0% | |
| TTCAATGAATTATGCAGTGA+TGG | + | chr3_4:57071714-57071733 | Msa0508830:intron | 30.0% | |
| !! | GATATTGAAAGTACTTAAGG+AGG | + | chr3_4:57071779-57071798 | Msa0508830:CDS | 30.0% |
| GTGGAAACTGCTAAAATATA+AGG | - | chr3_4:57071964-57071983 | None:intergenic | 30.0% | |
| GTACATCATATAACTTACAC+TGG | - | chr3_4:57072171-57072190 | None:intergenic | 30.0% | |
| ATACGTAAGACAAGACAAAG+AGG | - | chr3_4:57067935-57067954 | None:intergenic | 35.0% | |
| ! | GATGAGTGATGGCTTTTAAA+GGG | - | chr3_4:57067974-57067993 | None:intergenic | 35.0% |
| ! | TGATGAGTGATGGCTTTTAA+AGG | - | chr3_4:57067975-57067994 | None:intergenic | 35.0% |
| ! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3_4:57068042-57068061 | Msa0508830:CDS | 35.0% |
| TTCTGACATCTATTCTCGTA+AGG | + | chr3_4:57068116-57068135 | Msa0508830:CDS | 35.0% | |
| !!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3_4:57068167-57068186 | Msa0508830:intron | 35.0% |
| CCAACATCAATTCTTTCCTT+GGG | - | chr3_4:57068424-57068443 | None:intergenic | 35.0% | |
| CCAAGGAAAGAATTGATGTT+GGG | + | chr3_4:57068422-57068441 | Msa0508830:intron | 35.0% | |
| CAATATTGAAACTCACTGCT+GGG | - | chr3_4:57068461-57068480 | None:intergenic | 35.0% | |
| ACAATATTGAAACTCACTGC+TGG | - | chr3_4:57068462-57068481 | None:intergenic | 35.0% | |
| !! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3_4:57068487-57068506 | Msa0508830:intron | 35.0% |
| !!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3_4:57068488-57068507 | Msa0508830:intron | 35.0% |
| ! | GTACAAGGTCATTACTCTTT+TGG | - | chr3_4:57068515-57068534 | None:intergenic | 35.0% |
| GATTTAAGGATTGGAGTGAT+AGG | + | chr3_4:57068775-57068794 | Msa0508830:intron | 35.0% | |
| ACAAAATTCACAGTTGGAGT+GGG | - | chr3_4:57068819-57068838 | None:intergenic | 35.0% | |
| AACAAAATTCACAGTTGGAG+TGG | - | chr3_4:57068820-57068839 | None:intergenic | 35.0% | |
| AATCACTATGAGCATCTCTT+AGG | - | chr3_4:57069001-57069020 | None:intergenic | 35.0% | |
| TAGGCAGATATATTGTTACG+AGG | + | chr3_4:57069216-57069235 | Msa0508830:intron | 35.0% | |
| ! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3_4:57069281-57069300 | None:intergenic | 35.0% |
| TCAAGTTTATCTATGCGTAG+TGG | + | chr3_4:57069471-57069490 | Msa0508830:intron | 35.0% | |
| !!! | GTTTGTTATGGGTTTTTGTC+CGG | - | chr3_4:57069497-57069516 | None:intergenic | 35.0% |
| TATCTCTCTTAGGGTATGTT+TGG | + | chr3_4:57069720-57069739 | Msa0508830:intron | 35.0% | |
| ! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3_4:57069936-57069955 | Msa0508830:intron | 35.0% |
| ! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3_4:57069937-57069956 | Msa0508830:intron | 35.0% |
| TATCTATCTCCAATACTTGG+AGG | - | chr3_4:57070262-57070281 | None:intergenic | 35.0% | |
| GGAATATATCTTGTCTTACC+TGG | + | chr3_4:57070360-57070379 | Msa0508830:intron | 35.0% | |
| GTGTACTCAATGATGAAACA+TGG | + | chr3_4:57070419-57070438 | Msa0508830:intron | 35.0% | |
| ! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3_4:57070569-57070588 | None:intergenic | 35.0% |
| CATGTTGTAGGATGAAAGAA+TGG | + | chr3_4:57070701-57070720 | Msa0508830:intron | 35.0% | |
| !!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3_4:57071038-57071057 | Msa0508830:intron | 35.0% |
| ATAAAGCTATGCAAGGAACT+TGG | + | chr3_4:57071102-57071121 | Msa0508830:CDS | 35.0% | |
| TCTATATAACCAACTCCTTC+TGG | + | chr3_4:57071393-57071412 | Msa0508830:intron | 35.0% | |
| AACCTTAAAATCGTCTTTCC+GGG | - | chr3_4:57071512-57071531 | None:intergenic | 35.0% | |
| TACAAGTTATGTCAGGTTAG+AGG | - | chr3_4:57071638-57071657 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGACCAAAGC+AGG | - | chr3_4:57067909-57067928 | None:intergenic | 40.0% | |
| !! | AACCATGTTTTTGCTTCTGG+TGG | - | chr3_4:57068013-57068032 | None:intergenic | 40.0% |
| !! | TGCAACCATGTTTTTGCTTC+TGG | - | chr3_4:57068016-57068035 | None:intergenic | 40.0% |
| AGAACAAATTGAGGTCTTGC+AGG | - | chr3_4:57068039-57068058 | None:intergenic | 40.0% | |
| GATCCGAAGAGAACAAATTG+AGG | - | chr3_4:57068048-57068067 | None:intergenic | 40.0% | |
| AAGTGCCTATTGTAGCTTGA+GGG | - | chr3_4:57068401-57068420 | None:intergenic | 40.0% | |
| CCCAAGGAAAGAATTGATGT+TGG | + | chr3_4:57068421-57068440 | Msa0508830:intron | 40.0% | |
| CCCAACATCAATTCTTTCCT+TGG | - | chr3_4:57068425-57068444 | None:intergenic | 40.0% | |
| TGGTCCCACTCAAAAAGATA+AGG | - | chr3_4:57068495-57068514 | None:intergenic | 40.0% | |
| !! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3_4:57068747-57068766 | Msa0508830:intron | 40.0% |
| !! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3_4:57068748-57068767 | Msa0508830:intron | 40.0% |
| TAGGGTGGAGATTTAAGGAT+TGG | + | chr3_4:57068766-57068785 | Msa0508830:intron | 40.0% | |
| CAAAATTCACAGTTGGAGTG+GGG | - | chr3_4:57068818-57068837 | None:intergenic | 40.0% | |
| CAAGACATGTTGCAATAACG+AGG | - | chr3_4:57068936-57068955 | None:intergenic | 40.0% | |
| CTCGTTATTGCAACATGTCT+TGG | + | chr3_4:57068934-57068953 | Msa0508830:intron | 40.0% | |
| TGGCAAATATGTGTGTGAAG+TGG | + | chr3_4:57069079-57069098 | Msa0508830:intron | 40.0% | |
| !! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3_4:57069137-57069156 | None:intergenic | 40.0% |
| !! | CATGATTTATGGTGGATGCA+CGG | + | chr3_4:57069375-57069394 | Msa0508830:intron | 40.0% |
| ACAATTGCCTAATCTTCCTC+CGG | + | chr3_4:57069515-57069534 | Msa0508830:intron | 40.0% | |
| AATAGTATATACGCTACCGG+AGG | - | chr3_4:57069534-57069553 | None:intergenic | 40.0% | |
| TAGGATTACCAGCTCTACAT+TGG | + | chr3_4:57069607-57069626 | Msa0508830:intron | 40.0% | |
| CTGCACGAACTTATACAAAC+AGG | - | chr3_4:57069635-57069654 | None:intergenic | 40.0% | |
| CTGTTTGTATAAGTTCGTGC+AGG | + | chr3_4:57069633-57069652 | Msa0508830:intron | 40.0% | |
| ! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3_4:57069938-57069957 | Msa0508830:intron | 40.0% |
| AATTATTGTATGGTGCAGGC+AGG | - | chr3_4:57070036-57070055 | None:intergenic | 40.0% | |
| !! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3_4:57070108-57070127 | Msa0508830:CDS | 40.0% |
| TTTGGAGGCAATGATTCCAT+GGG | + | chr3_4:57070109-57070128 | Msa0508830:CDS | 40.0% | |
| ATTCTTCAAGTGGCACATGA+GGG | - | chr3_4:57070156-57070175 | None:intergenic | 40.0% | |
| TATTCTTCAAGTGGCACATG+AGG | - | chr3_4:57070157-57070176 | None:intergenic | 40.0% | |
| CAATACTTGGAGGACACTAA+TGG | - | chr3_4:57070252-57070271 | None:intergenic | 40.0% | |
| CATTAGTGTCCTCCAAGTAT+TGG | + | chr3_4:57070250-57070269 | Msa0508830:intron | 40.0% | |
| !! | GAAACAATTTTGGAGAACCC+AGG | - | chr3_4:57070381-57070400 | None:intergenic | 40.0% |
| ! | TGTGCGCAACGAAACAATTT+TGG | - | chr3_4:57070391-57070410 | None:intergenic | 40.0% |
| ! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3_4:57070568-57070587 | None:intergenic | 40.0% |
| AGTAACAAGTCAAACGGATG+AGG | + | chr3_4:57070654-57070673 | Msa0508830:intron | 40.0% | |
| GTAACAAGTCAAACGGATGA+GGG | + | chr3_4:57070655-57070674 | Msa0508830:intron | 40.0% | |
| ! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3_4:57070864-57070883 | None:intergenic | 40.0% |
| !! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3_4:57070901-57070920 | None:intergenic | 40.0% |
| TACAAGCGTCAGAATAGCTT+CGG | - | chr3_4:57071083-57071102 | None:intergenic | 40.0% | |
| CGCTTGTATAAAGCTATGCA+AGG | + | chr3_4:57071095-57071114 | Msa0508830:CDS | 40.0% | |
| TCGATGCTTTCTTTGCTAGA+TGG | + | chr3_4:57071322-57071341 | Msa0508830:intron | 40.0% | |
| ATATAACCAACTCCTTCTGG+TGG | + | chr3_4:57071396-57071415 | Msa0508830:intron | 40.0% | |
| TATAACCAACTCCTTCTGGT+GGG | + | chr3_4:57071397-57071416 | Msa0508830:intron | 40.0% | |
| ! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3_4:57071491-57071510 | Msa0508830:intron | 40.0% |
| ! | TACCCGGAAAGACGATTTTA+AGG | + | chr3_4:57071507-57071526 | Msa0508830:intron | 40.0% |
| CAGGTTAGAGGACACTAAAA+GGG | - | chr3_4:57071626-57071645 | None:intergenic | 40.0% | |
| TCAGGTTAGAGGACACTAAA+AGG | - | chr3_4:57071627-57071646 | None:intergenic | 40.0% | |
| AAGTACTTAAGGAGGCTGAT+TGG | + | chr3_4:57071787-57071806 | Msa0508830:CDS | 40.0% | |
| TATGATCTTGTTGCTGCTGA+TGG | + | chr3_4:57071864-57071883 | Msa0508830:CDS | 40.0% | |
| ATGATCTTGTTGCTGCTGAT+GGG | + | chr3_4:57071865-57071884 | Msa0508830:CDS | 40.0% | |
| ! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3_4:57071917-57071936 | Msa0508830:CDS | 40.0% |
| TTCAGTGGGATTAGGATGTT+GGG | + | chr3_4:57071931-57071950 | Msa0508830:exon | 40.0% | |
| CAAGACAAAGAGGCAGAAGA+AGG | - | chr3_4:57067925-57067944 | None:intergenic | 45.0% | |
| CACCACCAGAAGCAAAAACA+TGG | + | chr3_4:57068008-57068027 | Msa0508830:exon | 45.0% | |
| TCAGTTACAGCCATAGTGGT+TGG | + | chr3_4:57068082-57068101 | Msa0508830:CDS | 45.0% | |
| CAGTTACAGCCATAGTGGTT+GGG | + | chr3_4:57068083-57068102 | Msa0508830:CDS | 45.0% | |
| AGTTACAGCCATAGTGGTTG+GGG | + | chr3_4:57068084-57068103 | Msa0508830:CDS | 45.0% | |
| AGTGCCTATTGTAGCTTGAG+GGG | - | chr3_4:57068400-57068419 | None:intergenic | 45.0% | |
| ! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3_4:57068402-57068421 | None:intergenic | 45.0% |
| ! | GTGTCTAGGGTGGAGATTTA+AGG | + | chr3_4:57068761-57068780 | Msa0508830:intron | 45.0% |
| GTAACCGTTAGCATCACACT+CGG | - | chr3_4:57068862-57068881 | None:intergenic | 45.0% | |
| GCTCATAGTGATTGCAGAGT+AGG | + | chr3_4:57069008-57069027 | Msa0508830:intron | 45.0% | |
| TGTTACGAGGATACTACGGA+TGG | + | chr3_4:57069229-57069248 | Msa0508830:CDS | 45.0% | |
| GGAAAACTTGATGGAGGACT+TGG | - | chr3_4:57069272-57069291 | None:intergenic | 45.0% | |
| ! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3_4:57069278-57069297 | None:intergenic | 45.0% |
| ! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3_4:57069275-57069294 | Msa0508830:CDS | 45.0% |
| GTTTATCTATGCGTAGTGGC+CGG | + | chr3_4:57069475-57069494 | Msa0508830:intron | 45.0% | |
| TGCACAAATGGGGTTACAGA+CGG | + | chr3_4:57069948-57069967 | Msa0508830:intron | 45.0% | |
| ! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3_4:57070566-57070585 | None:intergenic | 45.0% |
| ! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3_4:57070567-57070586 | None:intergenic | 45.0% |
| !!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3_4:57070904-57070923 | None:intergenic | 45.0% |
| ! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3_4:57070904-57070923 | Msa0508830:CDS | 45.0% |
| !!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3_4:57070909-57070928 | None:intergenic | 45.0% |
| ! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3_4:57071411-57071430 | None:intergenic | 45.0% |
| ! | CACCACAATTTTGCTTCCCT+CGG | - | chr3_4:57071754-57071773 | None:intergenic | 45.0% |
| GAACATTGAATCCTTCCGAG+TGG | + | chr3_4:57071892-57071911 | Msa0508830:CDS | 45.0% | |
| CTCTCTGTGAAAAGTCCACT+CGG | - | chr3_4:57071910-57071929 | None:intergenic | 45.0% | |
| ! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3_4:57071916-57071935 | Msa0508830:CDS | 45.0% |
| GTTCAGTGGGATTAGGATGT+TGG | + | chr3_4:57071930-57071949 | Msa0508830:exon | 45.0% | |
| !!! | TTTTATGATTTTTTTTTTTT+TGG | - | chr3_4:57070503-57070522 | None:intergenic | 5.0% |
| !! | CGTTGACTCTCCACAAGCTT+AGG | + | chr3_4:57067867-57067886 | Msa0508830:five_prime_UTR | 50.0% |
| CTCTCCACAAGCTTAGGAAG+CGG | + | chr3_4:57067873-57067892 | Msa0508830:five_prime_UTR | 50.0% | |
| CAAACCGCTTCCTAAGCTTG+TGG | - | chr3_4:57067880-57067899 | None:intergenic | 50.0% | |
| CACAAGCTTAGGAAGCGGTT+TGG | + | chr3_4:57067878-57067897 | Msa0508830:five_prime_UTR | 50.0% | |
| GCTGTAACTGAGCTGAACGA+TGG | - | chr3_4:57068073-57068092 | None:intergenic | 50.0% | |
| CAGCTCAGTTACAGCCATAG+TGG | + | chr3_4:57068078-57068097 | Msa0508830:CDS | 50.0% | |
| GAAAGGAACCCCAACCACTA+TGG | - | chr3_4:57068095-57068114 | None:intergenic | 50.0% | |
| AGGTCCCCTCAAGCTACAAT+AGG | + | chr3_4:57068393-57068412 | Msa0508830:intron | 50.0% | |
| GCTACAATAGGCACTTCCCA+AGG | + | chr3_4:57068405-57068424 | Msa0508830:intron | 50.0% | |
| TTGGAGTGATAGGAAGACCG+AGG | + | chr3_4:57068785-57068804 | Msa0508830:intron | 50.0% | |
| TGGAGTGATAGGAAGACCGA+GGG | + | chr3_4:57068786-57068805 | Msa0508830:intron | 50.0% | |
| CACTCCGAGTGTGATGCTAA+CGG | + | chr3_4:57068855-57068874 | Msa0508830:intron | 50.0% | |
| CTCTTAGGAGAATGCGAGGA+AGG | - | chr3_4:57068986-57069005 | None:intergenic | 50.0% | |
| GCATCTCTTAGGAGAATGCG+AGG | - | chr3_4:57068990-57069009 | None:intergenic | 50.0% | |
| TACGCTACCGGAGGAAGATT+AGG | - | chr3_4:57069525-57069544 | None:intergenic | 50.0% | |
| AACAGGTGCCAATGTAGAGC+TGG | - | chr3_4:57069618-57069637 | None:intergenic | 50.0% | |
| ! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3_4:57070858-57070877 | None:intergenic | 50.0% |
| ! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3_4:57070914-57070933 | Msa0508830:CDS | 50.0% |
| ! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3_4:57071405-57071424 | None:intergenic | 50.0% |
| TGGTATCCATTTAGCAGCCG+AGG | + | chr3_4:57071734-57071753 | Msa0508830:CDS | 50.0% | |
| GGTATCCATTTAGCAGCCGA+GGG | + | chr3_4:57071735-57071754 | Msa0508830:CDS | 50.0% | |
| AGCCGAGGGAAGCAAAATTG+TGG | + | chr3_4:57071749-57071768 | Msa0508830:CDS | 50.0% | |
| ATAGACTTCCAGTGGAGGCA+TGG | - | chr3_4:57071816-57071835 | None:intergenic | 50.0% | |
| TGTGCATAGACTTCCAGTGG+AGG | - | chr3_4:57071821-57071840 | None:intergenic | 50.0% | |
| CAGTGTGCATAGACTTCCAG+TGG | - | chr3_4:57071824-57071843 | None:intergenic | 50.0% | |
| CTGTGAAAAGTCCACTCGGA+AGG | - | chr3_4:57071906-57071925 | None:intergenic | 50.0% | |
| !! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3_4:57071908-57071927 | Msa0508830:CDS | 50.0% |
| CAGAGAGGTTCAGTGGGATT+AGG | + | chr3_4:57071923-57071942 | Msa0508830:CDS | 50.0% | |
| !! | GGTTGGTTTGGTGTCTAGGG+TGG | + | chr3_4:57068751-57068770 | Msa0508830:intron | 55.0% |
| TCCATGGGTCCTCACTCATC+TGG | + | chr3_4:57070124-57070143 | Msa0508830:CDS | 55.0% | |
| ACCAGATGAGTGAGGACCCA+TGG | - | chr3_4:57070128-57070147 | None:intergenic | 55.0% | |
| GGTCCTCACTCATCTGGTCT+AGG | + | chr3_4:57070130-57070149 | Msa0508830:CDS | 55.0% | |
| TGCTTCCCTCGGCTGCTAAA+TGG | - | chr3_4:57071743-57071762 | None:intergenic | 55.0% | |
| ATTGGAAGCCATGCCTCCAC+TGG | + | chr3_4:57071805-57071824 | Msa0508830:CDS | 55.0% | |
| TGGAGTGGGGATCGAACCCT+CGG | - | chr3_4:57068805-57068824 | None:intergenic | 60.0% | |
| GGGCCTAGACCAGATGAGTG+AGG | - | chr3_4:57070136-57070155 | None:intergenic | 60.0% | |
| ! | CGGTTTGGCGCTGCCTGCTT+TGG | + | chr3_4:57067893-57067912 | Msa0508830:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57067733 | 57072226 | 57067733 | ID=Msa0508830;Name=Msa0508830 |
| chr3_4 | mRNA | 57067733 | 57072226 | 57067733 | ID=Msa0508830-mRNA-1;Parent=Msa0508830;Name=Msa0508830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=294|0.8|0.83|1|1|1|6|282|264 |
| chr3_4 | exon | 57067733 | 57068137 | 57067733 | ID=Msa0508830-mRNA-1:exon:12942;Parent=Msa0508830-mRNA-1 |
| chr3_4 | exon | 57069219 | 57069296 | 57069219 | ID=Msa0508830-mRNA-1:exon:12943;Parent=Msa0508830-mRNA-1 |
| chr3_4 | exon | 57070073 | 57070213 | 57070073 | ID=Msa0508830-mRNA-1:exon:12944;Parent=Msa0508830-mRNA-1 |
| chr3_4 | exon | 57070835 | 57070935 | 57070835 | ID=Msa0508830-mRNA-1:exon:12945;Parent=Msa0508830-mRNA-1 |
| chr3_4 | exon | 57071041 | 57071190 | 57071041 | ID=Msa0508830-mRNA-1:exon:12946;Parent=Msa0508830-mRNA-1 |
| chr3_4 | exon | 57071731 | 57072226 | 57071731 | ID=Msa0508830-mRNA-1:exon:12947;Parent=Msa0508830-mRNA-1 |
| chr3_4 | five_prime_UTR | 57067733 | 57068026 | 57067733 | ID=Msa0508830-mRNA-1:five_prime_utr;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57068027 | 57068137 | 57068027 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57069219 | 57069296 | 57069219 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57070073 | 57070213 | 57070073 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57070835 | 57070935 | 57070835 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57071041 | 57071190 | 57071041 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | CDS | 57071731 | 57071944 | 57071731 | ID=Msa0508830-mRNA-1:cds;Parent=Msa0508830-mRNA-1 |
| chr3_4 | three_prime_UTR | 57071945 | 57072226 | 57071945 | ID=Msa0508830-mRNA-1:three_prime_utr;Parent=Msa0508830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
