AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277180 MtrunA17_Chr2g0289841 96.624 237 4 1 1 237 1 233 8.59e-168 462
Msa0277180 MtrunA17_Chr4g0075711 80.660 212 41 0 25 236 15 226 1.03e-121 345
Msa0277180 MtrunA17_Chr3g0120921 77.273 198 45 0 39 236 28 225 6.04e-114 325
Msa0277180 MtrunA17_Chr8g0377621 67.052 173 57 0 64 236 59 231 5.73e-87 257
Msa0277180 MtrunA17_Chr3g0122221 67.429 175 56 1 63 236 52 226 3.59e-84 250
Msa0277180 MtrunA17_Chr7g0261611 50.000 190 93 2 46 234 29 217 2.86e-63 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277180 AT3G07880.1 77.273 198 44 1 39 236 41 237 7.42e-114 326
Msa0277180 AT1G62450.1 71.429 203 56 1 37 237 21 223 7.27e-98 285
Msa0277180 AT1G12070.1 69.608 204 60 1 35 236 19 222 3.41e-94 275

Find 89 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGGATTTCCATCTTC+TGG 0.210863 2_3:+9505623 None:intergenic
AGCACAAATAACAATGATTA+AGG 0.217161 2_3:+9504189 None:intergenic
GTCAACCATAACATTGTTTC+AGG 0.229464 2_3:-9505545 Msa0277180:CDS
CAATAACCCATCAACGAAAA+AGG 0.251245 2_3:+9506727 None:intergenic
AATCAAACTGTTCACTCTTT+TGG 0.268300 2_3:-9503944 Msa0277180:three_prime_UTR
CTCATCATTGTTAAGATTAC+CGG 0.289882 2_3:+9504096 None:intergenic
CTTTCAAACCTCCCCTATTT+CGG 0.305783 2_3:-9506943 Msa0277180:five_prime_UTR
CAGATTAATGTTCACTTTCC+AGG 0.308843 2_3:-9505567 Msa0277180:CDS
ACAAATATGGTCCTTGTTCT+TGG 0.315249 2_3:-9503988 Msa0277180:three_prime_UTR
CAAAACCACTTCTCCTTCAA+TGG 0.315692 2_3:+9506685 None:intergenic
CCAGATGGTGTTGTCTCTTC+AGG 0.324079 2_3:+9505087 None:intergenic
AGAAAGGACTGGCAGTAATT+AGG 0.336601 2_3:-9504262 Msa0277180:exon
ACCAACACTGTGTGGAAAAC+TGG 0.339922 2_3:-9505512 Msa0277180:CDS
GGGTCCACAATGTACCTTAA+AGG 0.356936 2_3:-9506458 Msa0277180:CDS
GAAGGAGGTGGTGGTGGTGG+TGG 0.358005 2_3:-9506568 Msa0277180:CDS
TCGTGTGGTGATCCGAAATA+GGG 0.363310 2_3:+9506931 None:intergenic
GGATTTCCATCTTCTGGTAT+TGG 0.367712 2_3:+9505629 None:intergenic
ATGATGAGAGCTTGAGGAGG+TGG 0.368412 2_3:-9506317 Msa0277180:CDS
CCTGAAGAGACAACACCATC+TGG 0.386766 2_3:-9505087 Msa0277180:CDS
GTCGTGTGGTGATCCGAAAT+AGG 0.397479 2_3:+9506930 None:intergenic
AGGAAGATGATGATGAAGAT+AGG 0.399631 2_3:-9506492 Msa0277180:CDS
CTTTGGAAGATTCTACCAAC+TGG 0.405068 2_3:-9506776 Msa0277180:five_prime_UTR
AAAGTAAACCACAAACCCTT+TGG 0.405134 2_3:+9505608 None:intergenic
AGGCTCAGAATCTTCACTTC+TGG 0.405375 2_3:+9505689 None:intergenic
TGTGAGAAATTTAGAAACTC+TGG 0.409824 2_3:-9505714 Msa0277180:intron
ATGTTTGGGGTGCACAAATA+TGG 0.411114 2_3:-9504001 Msa0277180:three_prime_UTR
ATGGAAATCCAAAGGGTTTG+TGG 0.414134 2_3:-9505616 Msa0277180:CDS
GGTATTGGAAGAACTATATC+AGG 0.417145 2_3:+9505644 None:intergenic
AATGAAGGAGGTGGTGGTGG+TGG 0.419453 2_3:-9506571 Msa0277180:CDS
AGGGAAAGAGAGAGAGGTGG+AGG 0.428643 2_3:+9507004 None:intergenic
GGAACAACTTGAAAAGGATA+AGG 0.428665 2_3:-9506437 Msa0277180:intron
TCTTTGAGTACAACCATTGA+AGG 0.434934 2_3:-9506698 Msa0277180:five_prime_UTR
TGCTATGAGAGAGAAAGTTT+AGG 0.454724 2_3:+9506979 None:intergenic
AGGTGGAAGGAACAGCTTCT+TGG 0.460032 2_3:-9506300 Msa0277180:CDS
AGTCTCAGTTTGAGGACTAA+AGG 0.467180 2_3:+9505125 None:intergenic
GATAGCAGTAAAGAAATGAT+TGG 0.472454 2_3:-9505150 Msa0277180:CDS
CTTAAAGGAACAACTTGAAA+AGG 0.479070 2_3:-9506443 Msa0277180:CDS
AGATGCCAAGAAGGCAGAGA+AGG 0.484178 2_3:+9506902 None:intergenic
TTGTGGTTTACTTTGAAAGA+AGG 0.487138 2_3:-9505599 Msa0277180:CDS
TTTAGGATGATGAGAGCTTG+AGG 0.494234 2_3:-9506323 Msa0277180:intron
GATAATGAAGGAGGTGGTGG+TGG 0.500855 2_3:-9506574 Msa0277180:CDS
GAGAGAGAAAGTTTAGGAGA+GGG 0.505031 2_3:+9506985 None:intergenic
ATCTGGGATGTTTGCTAGAG+GGG 0.506001 2_3:-9505070 Msa0277180:CDS
TGAGACCTGAAACAATGTTA+TGG 0.506555 2_3:+9505540 None:intergenic
TGTGAAAAGTGATAAGGAAG+AGG 0.508987 2_3:-9506626 Msa0277180:CDS
AGGAAGAAAAGATGCCAAGA+AGG 0.512847 2_3:+9506893 None:intergenic
TGATGATAACAAGTGCTACT+TGG 0.512860 2_3:-9504308 Msa0277180:CDS
TAGGAGAGGGAAAGAGAGAG+AGG 0.513591 2_3:+9506998 None:intergenic
TTTCTAATCCTGTCTGAGAC+CGG 0.514082 2_3:-9504115 Msa0277180:three_prime_UTR
GTTCTTCCAATACCAGAAGA+TGG 0.514303 2_3:-9505635 Msa0277180:CDS
GAAGATAGGAAGATTGAGTT+GGG 0.520070 2_3:-9506478 Msa0277180:CDS
GGCATATTCAGCTAGAAGTA+AGG 0.525812 2_3:-9505049 Msa0277180:intron
TGAAGATAGGAAGATTGAGT+TGG 0.526221 2_3:-9506479 Msa0277180:CDS
TGAGTGTAAGTCTCAGTTTG+AGG 0.527673 2_3:+9505117 None:intergenic
TGAGAGAGAAAGTTTAGGAG+AGG 0.533581 2_3:+9506984 None:intergenic
TAAGATTACCGGTCTCAGAC+AGG 0.539093 2_3:+9504107 None:intergenic
ACATATGAATCAATCAATGT+AGG 0.540113 2_3:+9504217 None:intergenic
GTGTGGAAAACTGGTATCAA+AGG 0.544247 2_3:-9505503 Msa0277180:intron
CCAGAAGATGGAAATCCAAA+GGG 0.550094 2_3:-9505623 Msa0277180:CDS
GAGTTCTGTTGCTGCTACTG+AGG 0.550601 2_3:-9506515 Msa0277180:CDS
GAGAGGGAAAGAGAGAGAGG+TGG 0.555273 2_3:+9507001 None:intergenic
ACCAGAAGATGGAAATCCAA+AGG 0.565847 2_3:-9505624 Msa0277180:CDS
CAAGAAGGCAGAGAAGGAAA+AGG 0.566078 2_3:+9506908 None:intergenic
TACAACCATTGAAGGAGAAG+TGG 0.568479 2_3:-9506690 Msa0277180:five_prime_UTR
AGTGTTGACATCAATGCTGT+TGG 0.578216 2_3:-9506276 Msa0277180:CDS
AGTGATAATGAAGGAGGTGG+TGG 0.578607 2_3:-9506577 Msa0277180:CDS
TATGAATCAATCAATGTAGG+AGG 0.579564 2_3:+9504220 None:intergenic
CATCTGGGATGTTTGCTAGA+GGG 0.582598 2_3:-9505071 Msa0277180:CDS
TGTTCCTTTAAGGTACATTG+TGG 0.585755 2_3:+9506454 None:intergenic
TGATAATGTGAAAAGTGATA+AGG 0.588267 2_3:-9506632 Msa0277180:CDS
CTGAAGAGACAACACCATCT+GGG 0.589031 2_3:-9505086 Msa0277180:CDS
AGGATGATGAGAGCTTGAGG+AGG 0.599532 2_3:-9506320 Msa0277180:CDS
AAACAATGTTATGGTTGACC+TGG 0.602214 2_3:+9505549 None:intergenic
GTTGACATCAATGCTGTTGG+AGG 0.602320 2_3:-9506273 Msa0277180:intron
CGTGTGGTGATCCGAAATAG+GGG 0.609821 2_3:+9506932 None:intergenic
TTTGGAAGATTCTACCAACT+GGG 0.610079 2_3:-9506775 Msa0277180:five_prime_UTR
TTCTGTTGCTGCTACTGAGG+AGG 0.610284 2_3:-9506512 Msa0277180:CDS
AGAAACAAGTAAAACACTGA+AGG 0.611286 2_3:+9504159 None:intergenic
TGAGAGCTTGAGGAGGTGGA+AGG 0.612840 2_3:-9506313 Msa0277180:CDS
CCATCTGGGATGTTTGCTAG+AGG 0.625157 2_3:-9505072 Msa0277180:CDS
GTTGAAGAAAGTGATAATGA+AGG 0.638901 2_3:-9506586 Msa0277180:CDS
CCTCTAGCAAACATCCCAGA+TGG 0.639199 2_3:+9505072 None:intergenic
GAAAGTGATAATGAAGGAGG+TGG 0.650808 2_3:-9506580 Msa0277180:CDS
TCAAGTACACCAACACTGTG+TGG 0.658417 2_3:-9505520 Msa0277180:CDS
GAAGAAAGTGATAATGAAGG+AGG 0.669435 2_3:-9506583 Msa0277180:CDS
GTAATCTTAACAATGATGAG+AGG 0.672415 2_3:-9504093 Msa0277180:three_prime_UTR
ATGCTATTATTCCAAGAACA+AGG 0.680928 2_3:+9503977 None:intergenic
CAGAGAAGGAAAAGGTCGTG+TGG 0.684242 2_3:+9506916 None:intergenic
GTGGTGATCCGAAATAGGGG+AGG 0.696813 2_3:+9506935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAACAACATAATTAAA+AGG + chr2_3:9505101-9505120 None:intergenic 10.0%
!! AATAAATGTTCTAATAAATT+TGG - chr2_3:9506363-9506382 Msa0277180:intron 10.0%
!! CAACAATAATAATATATGTT+CGG + chr2_3:9506056-9506075 None:intergenic 15.0%
!!! TTACATATTTTTACTTGTTT+GGG - chr2_3:9506279-9506298 Msa0277180:CDS 15.0%
!! ACATTTATTGAATTTATTGA+TGG + chr2_3:9506352-9506371 None:intergenic 15.0%
!!! TTTGTTTTTGTTGTGATTTT+AGG - chr2_3:9504629-9504648 Msa0277180:intron 20.0%
!!! AAACAGAATAAATGTCATTT+TGG - chr2_3:9504934-9504953 Msa0277180:intron 20.0%
!!! AATAAATGTCATTTTGGTTA+TGG - chr2_3:9504940-9504959 Msa0277180:intron 20.0%
!!! ATGTTGTTTATATAGTAGAT+AGG - chr2_3:9505108-9505127 Msa0277180:CDS 20.0%
!! TTAATGATTCAATTAGTACT+TGG + chr2_3:9505185-9505204 None:intergenic 20.0%
!! CGAACATATATTATTATTGT+TGG - chr2_3:9506054-9506073 Msa0277180:intron 20.0%
!!! CTTACATATTTTTACTTGTT+TGG - chr2_3:9506278-9506297 Msa0277180:CDS 20.0%
!! TAATTCAAATATCAGAAAAG+TGG + chr2_3:9506410-9506429 None:intergenic 20.0%
! AGAAAAATGAGATAAAGCAA+AGG + chr2_3:9504099-9504118 None:intergenic 25.0%
!! TTGAATTCTGAGAAAAAAGA+TGG - chr2_3:9504304-9504323 Msa0277180:CDS 25.0%
!! TGAATTCTGAGAAAAAAGAT+GGG - chr2_3:9504305-9504324 Msa0277180:CDS 25.0%
!! TGATAATGTGAAAAGTGATA+AGG - chr2_3:9504337-9504356 Msa0277180:intron 25.0%
!!! TCTTTGAAGATTTTGAATTG+TGG - chr2_3:9504894-9504913 Msa0277180:intron 25.0%
!!! TCTGTTTTAGATAATGCTTT+AGG + chr2_3:9504921-9504940 None:intergenic 25.0%
!!! TCTGCATCATCTTTTATTTA+AGG - chr2_3:9504993-9505012 Msa0277180:intron 25.0%
!!! CATCTTTTATTTAAGGTCTT+AGG - chr2_3:9505000-9505019 Msa0277180:intron 25.0%
! AATTTCTCACAATAAACCAA+TGG + chr2_3:9505246-9505265 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAATCA+GGG - chr2_3:9505734-9505753 Msa0277180:intron 25.0%
! TTGAAATTGAGTTATGACAA+AGG - chr2_3:9506088-9506107 Msa0277180:intron 25.0%
! CAATATTATGAATGTTGTGA+AGG - chr2_3:9506173-9506192 Msa0277180:intron 25.0%
!!! AATTACTTCTCTGAAATTCT+TGG - chr2_3:9506425-9506444 Msa0277180:intron 25.0%
! ACATATGAATCAATCAATGT+AGG + chr2_3:9506755-9506774 None:intergenic 25.0%
! AGCACAAATAACAATGATTA+AGG + chr2_3:9506783-9506802 None:intergenic 25.0%
!!! AAATTTGAGTTTTGCATGTT+TGG - chr2_3:9506953-9506972 Msa0277180:five_prime_UTR 25.0%
!!! AATTTGAGTTTTGCATGTTT+GGG - chr2_3:9506954-9506973 Msa0277180:five_prime_UTR 25.0%
! TTTCTTTTGTTACAAACCCA+AGG - chr2_3:9504155-9504174 Msa0277180:three_prime_UTR 30.0%
!! GAACAAGAAAAAAGTACCTT+GGG + chr2_3:9504174-9504193 None:intergenic 30.0%
!! AGAACAAGAAAAAAGTACCT+TGG + chr2_3:9504175-9504194 None:intergenic 30.0%
!!! GGTACTTTTTTCTTGTTCTT+TGG - chr2_3:9504176-9504195 Msa0277180:three_prime_UTR 30.0%
AATAACCCATCAACGAAAAA+GGG + chr2_3:9504244-9504263 None:intergenic 30.0%
! GTTGAAGAAAGTGATAATGA+AGG - chr2_3:9504383-9504402 Msa0277180:intron 30.0%
!!! CTTTTCAAGTTGTTCCTTTA+AGG + chr2_3:9504528-9504547 None:intergenic 30.0%
CTTAAAGGAACAACTTGAAA+AGG - chr2_3:9504526-9504545 Msa0277180:intron 30.0%
ACCTCATAATGAAAATCCAT+TGG - chr2_3:9505227-9505246 Msa0277180:intron 30.0%
!! ACCAATGGATTTTCATTATG+AGG + chr2_3:9505231-9505250 None:intergenic 30.0%
TGTGAGAAATTTAGAAACTC+TGG - chr2_3:9505255-9505274 Msa0277180:intron 30.0%
! TTGTGGTTTACTTTGAAAGA+AGG - chr2_3:9505370-9505389 Msa0277180:intron 30.0%
GTAAGTGATTATGCGATAAA+CGG - chr2_3:9505707-9505726 Msa0277180:intron 30.0%
! GTTAAGTTGTTTATCCAATC+AGG - chr2_3:9505733-9505752 Msa0277180:intron 30.0%
ACATAAACTATTACCCTGAT+TGG + chr2_3:9505750-9505769 None:intergenic 30.0%
GTTTATGTCAAACCATAAAC+TGG - chr2_3:9505762-9505781 Msa0277180:intron 30.0%
TCAACTGTAACAAACAAACA+AGG + chr2_3:9505801-9505820 None:intergenic 30.0%
GATAGCAGTAAAGAAATGAT+TGG - chr2_3:9505819-9505838 Msa0277180:intron 30.0%
! ATGAAATTAGTGAAAGGTGT+AGG + chr2_3:9506199-9506218 None:intergenic 30.0%
TGGCAAATGAAATTAGTGAA+AGG + chr2_3:9506205-9506224 None:intergenic 30.0%
AATATCAGAAAAGTGGTTGA+AGG + chr2_3:9506403-9506422 None:intergenic 30.0%
ATTGCTTCATTCAAAAGCAA+AGG + chr2_3:9506472-9506491 None:intergenic 30.0%
! CTACACTTTTGATATCAGAA+AGG - chr2_3:9506691-9506710 Msa0277180:five_prime_UTR 30.0%
TATGAATCAATCAATGTAGG+AGG + chr2_3:9506752-9506771 None:intergenic 30.0%
AGAAACAAGTAAAACACTGA+AGG + chr2_3:9506813-9506832 None:intergenic 30.0%
CTCATCATTGTTAAGATTAC+CGG + chr2_3:9506876-9506895 None:intergenic 30.0%
GTAATCTTAACAATGATGAG+AGG - chr2_3:9506876-9506895 Msa0277180:five_prime_UTR 30.0%
!! AGGATTTTGAAGGATGAAAT+TGG - chr2_3:9506896-9506915 Msa0277180:five_prime_UTR 30.0%
!! ATTTGAGTTTTGCATGTTTG+GGG - chr2_3:9506955-9506974 Msa0277180:five_prime_UTR 30.0%
ATGCTATTATTCCAAGAACA+AGG + chr2_3:9506995-9507014 None:intergenic 30.0%
! AATCAAACTGTTCACTCTTT+TGG - chr2_3:9507025-9507044 Msa0277180:five_prime_UTR 30.0%
TGCTATGAGAGAGAAAGTTT+AGG + chr2_3:9503993-9504012 None:intergenic 35.0%
TTTGGAAGATTCTACCAACT+GGG - chr2_3:9504194-9504213 Msa0277180:three_prime_UTR 35.0%
AAAAACAAAAACGACCCAGT+TGG + chr2_3:9504211-9504230 None:intergenic 35.0%
!! ATTTGTCCCTTTTTCGTTGA+TGG - chr2_3:9504235-9504254 Msa0277180:three_prime_UTR 35.0%
!! TTTGTCCCTTTTTCGTTGAT+GGG - chr2_3:9504236-9504255 Msa0277180:three_prime_UTR 35.0%
CAATAACCCATCAACGAAAA+AGG + chr2_3:9504245-9504264 None:intergenic 35.0%
TCTTTGAGTACAACCATTGA+AGG - chr2_3:9504271-9504290 Msa0277180:CDS 35.0%
TGTGAAAAGTGATAAGGAAG+AGG - chr2_3:9504343-9504362 Msa0277180:intron 35.0%
! GAAGAAAGTGATAATGAAGG+AGG - chr2_3:9504386-9504405 Msa0277180:intron 35.0%
! AGGAAGATGATGATGAAGAT+AGG - chr2_3:9504477-9504496 Msa0277180:intron 35.0%
TGAAGATAGGAAGATTGAGT+TGG - chr2_3:9504490-9504509 Msa0277180:intron 35.0%
GAAGATAGGAAGATTGAGTT+GGG - chr2_3:9504491-9504510 Msa0277180:intron 35.0%
!! TGTTCCTTTAAGGTACATTG+TGG + chr2_3:9504518-9504537 None:intergenic 35.0%
GGAACAACTTGAAAAGGATA+AGG - chr2_3:9504532-9504551 Msa0277180:intron 35.0%
! GCATTTTCTGCATTGTTTGT+TGG - chr2_3:9504831-9504850 Msa0277180:intron 35.0%
AAATATCCTTCTAGTGTTGC+TGG - chr2_3:9505070-9505089 Msa0277180:CDS 35.0%
! TATCAGCAGCTTTTATTGCA+AGG + chr2_3:9505303-9505322 None:intergenic 35.0%
! GGTATTGGAAGAACTATATC+AGG + chr2_3:9505328-9505347 None:intergenic 35.0%
AAAGTAAACCACAAACCCTT+TGG + chr2_3:9505364-9505383 None:intergenic 35.0%
CAGATTAATGTTCACTTTCC+AGG - chr2_3:9505402-9505421 Msa0277180:intron 35.0%
AAACAATGTTATGGTTGACC+TGG + chr2_3:9505423-9505442 None:intergenic 35.0%
GTCAACCATAACATTGTTTC+AGG - chr2_3:9505424-9505443 Msa0277180:intron 35.0%
TGAGACCTGAAACAATGTTA+TGG + chr2_3:9505432-9505451 None:intergenic 35.0%
TAGCTCTTGATTCATCGTTA+AGG + chr2_3:9505973-9505992 None:intergenic 35.0%
ATCAAGAGCTAGTGTATGTT+TGG - chr2_3:9505982-9506001 Msa0277180:intron 35.0%
TGAGTTTGACAAAACCATAG+TGG + chr2_3:9506025-9506044 None:intergenic 35.0%
! TTTTCTTAACTCATAGCAGC+TGG + chr2_3:9506225-9506244 None:intergenic 35.0%
TTGAATGAAGCAATTGACAG+AGG - chr2_3:9506478-9506497 Msa0277180:CDS 35.0%
! TGATGATAACAAGTGCTACT+TGG - chr2_3:9506661-9506680 Msa0277180:exon 35.0%
! CTTTTGATATCAGAAAGGAC+TGG - chr2_3:9506696-9506715 Msa0277180:five_prime_UTR 35.0%
! CAATGATGAGAGGATTTTGA+AGG - chr2_3:9506886-9506905 Msa0277180:five_prime_UTR 35.0%
ACAAATATGGTCCTTGTTCT+TGG - chr2_3:9506981-9507000 Msa0277180:five_prime_UTR 35.0%
GAGAGAGAAAGTTTAGGAGA+GGG + chr2_3:9503987-9504006 None:intergenic 40.0%
TGAGAGAGAAAGTTTAGGAG+AGG + chr2_3:9503988-9504007 None:intergenic 40.0%
CTTTCAAACCTCCCCTATTT+CGG - chr2_3:9504026-9504045 Msa0277180:three_prime_UTR 40.0%
AGGAAGAAAAGATGCCAAGA+AGG + chr2_3:9504079-9504098 None:intergenic 40.0%
! CTTTGGAAGATTCTACCAAC+TGG - chr2_3:9504193-9504212 Msa0277180:three_prime_UTR 40.0%
TACAACCATTGAAGGAGAAG+TGG - chr2_3:9504279-9504298 Msa0277180:CDS 40.0%
CAAAACCACTTCTCCTTCAA+TGG + chr2_3:9504287-9504306 None:intergenic 40.0%
! GAAAGTGATAATGAAGGAGG+TGG - chr2_3:9504389-9504408 Msa0277180:intron 40.0%
! TTTAGGATGATGAGAGCTTG+AGG - chr2_3:9504646-9504665 Msa0277180:intron 40.0%
!! AGTGTTGACATCAATGCTGT+TGG - chr2_3:9504693-9504712 Msa0277180:intron 40.0%
GAAAAACCAGCAACACTAGA+AGG + chr2_3:9505079-9505098 None:intergenic 40.0%
GTTCTTCCAATACCAGAAGA+TGG - chr2_3:9505334-9505353 Msa0277180:intron 40.0%
GGATTTCCATCTTCTGGTAT+TGG + chr2_3:9505343-9505362 None:intergenic 40.0%
ACCAGAAGATGGAAATCCAA+AGG - chr2_3:9505345-9505364 Msa0277180:intron 40.0%
CCAGAAGATGGAAATCCAAA+GGG - chr2_3:9505346-9505365 Msa0277180:intron 40.0%
ATGGAAATCCAAAGGGTTTG+TGG - chr2_3:9505353-9505372 Msa0277180:intron 40.0%
GTGTGGAAAACTGGTATCAA+AGG - chr2_3:9505466-9505485 Msa0277180:intron 40.0%
TCATATCAATCCCTCTCTCA+GGG - chr2_3:9505493-9505512 Msa0277180:intron 40.0%
TCAACAATGAGGCCAGTTTA+TGG + chr2_3:9505777-9505796 None:intergenic 40.0%
ACAAACAAGGCTCAACAATG+AGG + chr2_3:9505788-9505807 None:intergenic 40.0%
AGTCTCAGTTTGAGGACTAA+AGG + chr2_3:9505847-9505866 None:intergenic 40.0%
TGAGTGTAAGTCTCAGTTTG+AGG + chr2_3:9505855-9505874 None:intergenic 40.0%
GGCATATTCAGCTAGAAGTA+AGG - chr2_3:9505920-9505939 Msa0277180:intron 40.0%
GAGCTAGTGTATGTTTGGAT+TGG - chr2_3:9505987-9506006 Msa0277180:intron 40.0%
! CTAGTGTATGTTTGGATTGG+CGG - chr2_3:9505990-9506009 Msa0277180:intron 40.0%
TGTCTGTGTCAATGCTTCAT+AGG + chr2_3:9506543-9506562 None:intergenic 40.0%
! AGAAAGGACTGGCAGTAATT+AGG - chr2_3:9506707-9506726 Msa0277180:five_prime_UTR 40.0%
! TTTCTAATCCTGTCTGAGAC+CGG - chr2_3:9506854-9506873 Msa0277180:five_prime_UTR 40.0%
! ATGTTTGGGGTGCACAAATA+TGG - chr2_3:9506968-9506987 Msa0277180:five_prime_UTR 40.0%
TCGTGTGGTGATCCGAAATA+GGG + chr2_3:9504041-9504060 None:intergenic 45.0%
CAAGAAGGCAGAGAAGGAAA+AGG + chr2_3:9504064-9504083 None:intergenic 45.0%
! CTTTTCCTTCTCTGCCTTCT+TGG - chr2_3:9504062-9504081 Msa0277180:three_prime_UTR 45.0%
! AGTGATAATGAAGGAGGTGG+TGG - chr2_3:9504392-9504411 Msa0277180:intron 45.0%
GGGTCCACAATGTACCTTAA+AGG - chr2_3:9504511-9504530 Msa0277180:intron 45.0%
GTTGACATCAATGCTGTTGG+AGG - chr2_3:9504696-9504715 Msa0277180:intron 45.0%
AGGCTCAGAATCTTCACTTC+TGG + chr2_3:9505283-9505302 None:intergenic 45.0%
CCCTTTGGATTTCCATCTTC+TGG + chr2_3:9505349-9505368 None:intergenic 45.0%
TCAAGTACACCAACACTGTG+TGG - chr2_3:9505449-9505468 Msa0277180:intron 45.0%
ACCAACACTGTGTGGAAAAC+TGG - chr2_3:9505457-9505476 Msa0277180:intron 45.0%
! ACCAGTTTTCCACACAGTGT+TGG + chr2_3:9505461-9505480 None:intergenic 45.0%
CTCATATCAATCCCTCTCTC+AGG - chr2_3:9505492-9505511 Msa0277180:intron 45.0%
TCAAAACATGCCCTGAGAGA+GGG + chr2_3:9505506-9505525 None:intergenic 45.0%
ATCAAAACATGCCCTGAGAG+AGG + chr2_3:9505507-9505526 None:intergenic 45.0%
CTGAAGAGACAACACCATCT+GGG - chr2_3:9505883-9505902 Msa0277180:intron 45.0%
! CATCTGGGATGTTTGCTAGA+GGG - chr2_3:9505898-9505917 Msa0277180:intron 45.0%
! ATCTGGGATGTTTGCTAGAG+GGG - chr2_3:9505899-9505918 Msa0277180:intron 45.0%
!! GTTTGGATTGGCGGTGTATT+TGG - chr2_3:9505999-9506018 Msa0277180:intron 45.0%
TAAGATTACCGGTCTCAGAC+AGG + chr2_3:9506865-9506884 None:intergenic 45.0%
TAGGAGAGGGAAAGAGAGAG+AGG + chr2_3:9503974-9503993 None:intergenic 50.0%
CGTGTGGTGATCCGAAATAG+GGG + chr2_3:9504040-9504059 None:intergenic 50.0%
GTCGTGTGGTGATCCGAAAT+AGG + chr2_3:9504042-9504061 None:intergenic 50.0%
CAGAGAAGGAAAAGGTCGTG+TGG + chr2_3:9504056-9504075 None:intergenic 50.0%
AGATGCCAAGAAGGCAGAGA+AGG + chr2_3:9504070-9504089 None:intergenic 50.0%
! GATAATGAAGGAGGTGGTGG+TGG - chr2_3:9504395-9504414 Msa0277180:intron 50.0%
GAGTTCTGTTGCTGCTACTG+AGG - chr2_3:9504454-9504473 Msa0277180:intron 50.0%
TTCTGTTGCTGCTACTGAGG+AGG - chr2_3:9504457-9504476 Msa0277180:intron 50.0%
AGGATGATGAGAGCTTGAGG+AGG - chr2_3:9504649-9504668 Msa0277180:intron 50.0%
ATGATGAGAGCTTGAGGAGG+TGG - chr2_3:9504652-9504671 Msa0277180:intron 50.0%
AGGTGGAAGGAACAGCTTCT+TGG - chr2_3:9504669-9504688 Msa0277180:intron 50.0%
!! CCAGATGGTGTTGTCTCTTC+AGG + chr2_3:9505885-9505904 None:intergenic 50.0%
CCTGAAGAGACAACACCATC+TGG - chr2_3:9505882-9505901 Msa0277180:intron 50.0%
CCTCTAGCAAACATCCCAGA+TGG + chr2_3:9505900-9505919 None:intergenic 50.0%
! CCATCTGGGATGTTTGCTAG+AGG - chr2_3:9505897-9505916 Msa0277180:intron 50.0%
AAGAGTTAGTGAGCCTGAGC+TGG - chr2_3:9506244-9506263 Msa0277180:intron 50.0%
AGCAGATAAGAGTCCAGCTC+AGG + chr2_3:9506260-9506279 None:intergenic 50.0%
CATTGACACAGACACGACAC+TGG - chr2_3:9506549-9506568 Msa0277180:CDS 50.0%
AGGGAAAGAGAGAGAGGTGG+AGG + chr2_3:9503968-9503987 None:intergenic 55.0%
GAGAGGGAAAGAGAGAGAGG+TGG + chr2_3:9503971-9503990 None:intergenic 55.0%
GTGGTGATCCGAAATAGGGG+AGG + chr2_3:9504037-9504056 None:intergenic 55.0%
!! AATGAAGGAGGTGGTGGTGG+TGG - chr2_3:9504398-9504417 Msa0277180:intron 55.0%
TGAGAGCTTGAGGAGGTGGA+AGG - chr2_3:9504656-9504675 Msa0277180:intron 55.0%
GGCGGTGTATTTGGCCACTA+TGG - chr2_3:9506008-9506027 Msa0277180:intron 55.0%
!! GAAGGAGGTGGTGGTGGTGG+TGG - chr2_3:9504401-9504420 Msa0277180:intron 65.0%
!! GAGGTGGTGGTGGTGGTGGT+GGG - chr2_3:9504405-9504424 Msa0277180:intron 65.0%
!! AGGTGGTGGTGGTGGTGGTG+GGG - chr2_3:9504406-9504425 Msa0277180:intron 65.0%
!! GGAGGTGGTGGTGGTGGTGG+TGG - chr2_3:9504404-9504423 Msa0277180:intron 70.0%
!! GGTGGTGGTGGTGGTGGTGG+GGG - chr2_3:9504407-9504426 Msa0277180:intron 70.0%
!! GGTGGTGGTGGTGGTGGGGG+TGG - chr2_3:9504410-9504429 Msa0277180:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 9503922 9507069 9503922 ID=Msa0277180;Name=Msa0277180
chr2_3 mRNA 9503922 9507069 9503922 ID=Msa0277180-mRNA-1;Parent=Msa0277180;Name=Msa0277180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=401|1|1|1|1|1|5|345|237
chr2_3 exon 9503922 9504338 9503922 ID=Msa0277180-mRNA-1:exon:4340;Parent=Msa0277180-mRNA-1
chr2_3 exon 9505050 9505174 9505050 ID=Msa0277180-mRNA-1:exon:4339;Parent=Msa0277180-mRNA-1
chr2_3 exon 9505504 9505722 9505504 ID=Msa0277180-mRNA-1:exon:4338;Parent=Msa0277180-mRNA-1
chr2_3 exon 9506274 9506340 9506274 ID=Msa0277180-mRNA-1:exon:4337;Parent=Msa0277180-mRNA-1
chr2_3 exon 9506438 9507069 9506438 ID=Msa0277180-mRNA-1:exon:4336;Parent=Msa0277180-mRNA-1
chr2_3 five_prime_UTR 9506669 9507069 9506669 ID=Msa0277180-mRNA-1:five_prime_utr;Parent=Msa0277180-mRNA-1
chr2_3 CDS 9506438 9506668 9506438 ID=Msa0277180-mRNA-1:cds;Parent=Msa0277180-mRNA-1
chr2_3 CDS 9506274 9506340 9506274 ID=Msa0277180-mRNA-1:cds;Parent=Msa0277180-mRNA-1
chr2_3 CDS 9505504 9505722 9505504 ID=Msa0277180-mRNA-1:cds;Parent=Msa0277180-mRNA-1
chr2_3 CDS 9505050 9505174 9505050 ID=Msa0277180-mRNA-1:cds;Parent=Msa0277180-mRNA-1
chr2_3 CDS 9504267 9504338 9504267 ID=Msa0277180-mRNA-1:cds;Parent=Msa0277180-mRNA-1
chr2_3 three_prime_UTR 9503922 9504266 9503922 ID=Msa0277180-mRNA-1:three_prime_utr;Parent=Msa0277180-mRNA-1
Gene Sequence

>Msa0277180

ATGGGTCTTGATGATGATAATGTGAAAAGTGATAAGGAAGAGGAGAAGAGTTCTCGTGTTGTTGAAGAAAGTGATAATGAAGGAGGTGGTGGTGGTGGTGGTGGGGGTGGCGATAGCAGATACATGAGTGAGAGTTCTGTTGCTGCTACTGAGGAGGAAGATGATGATGAAGATAGGAAGATTGAGTTGGGTCCACAATGTACCTTAAAGGAACAACTTGAAAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAACAGCTTCTTGGAAGTGTTGACATCAATGCTGTTGGAGAAACTCTGGAGCCAGAAGTGAAGATTCTGAGCCTTGCAATAAAAGCTGCTGATAGACCTGATATAGTTCTTCCAATACCAGAAGATGGAAATCCAAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCAAATACAGATTAATGTTCACTTTCCAGGTCAACCATAACATTGTTTCAGGTCTCAAGTACACCAACACTGTGTGGAAAACTGGTATCAAAGTTGATAGCAGTAAAGAAATGATTGGAACCTTTAGTCCTCAAACTGAGACTTACACTCATGAGATGCCTGAAGAGACAACACCATCTGGGATGTTTGCTAGAGGGGCATATTCAGCTAGAAGTAAGTTTGTTGATGATGATAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCAGAAAGGACTGGCAGTAA

Protein sequence

>Msa0277180

MGLDDDNVKSDKEEEKSSRVVEESDNEGGGGGGGGGGDSRYMSESSVAATEEEDDDEDRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLEPEVKILSLAIKAADRPDIVLPIPEDGNPKGLWFTLKEGSKYRLMFTFQVNHNIVSGLKYTNTVWKTGIKVDSSKEMIGTFSPQTETYTHEMPEETTPSGMFARGAYSARSKFVDDDNKCYLEINYTFDIRKDWQ*