Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416590 | XP_003600886.1 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416590 | sp|Q9SRM5|CPR49_ARATH | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.43e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416590 | G7JB85 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0416590 | 0.802801 | 4.722154e-49 | -8.615850e-47 |
| Msa0017510 | Msa0416590 | 0.807994 | 3.851715e-50 | -8.615850e-47 |
| Msa0043670 | Msa0416590 | -0.821553 | 3.798350e-53 | -8.615850e-47 |
| Msa0077200 | Msa0416590 | 0.808440 | 3.094027e-50 | -8.615850e-47 |
| Msa0089630 | Msa0416590 | 0.803432 | 3.496371e-49 | -8.615850e-47 |
| Msa0090590 | Msa0416590 | 0.803238 | 3.834735e-49 | -8.615850e-47 |
| Msa0092740 | Msa0416590 | -0.801890 | 7.272262e-49 | -8.615850e-47 |
| Msa0110970 | Msa0416590 | 0.829915 | 3.939335e-55 | -8.615850e-47 |
| Msa0114540 | Msa0416590 | -0.800536 | 1.376667e-48 | -8.615850e-47 |
| Msa0115160 | Msa0416590 | 0.809348 | 1.978303e-50 | -8.615850e-47 |
| Msa0137610 | Msa0416590 | -0.808393 | 3.166648e-50 | -8.615850e-47 |
| Msa0146260 | Msa0416590 | 0.815372 | 9.562126e-52 | -8.615850e-47 |
| Msa0157290 | Msa0416590 | 0.808220 | 3.447488e-50 | -8.615850e-47 |
| Msa0168500 | Msa0416590 | 0.801062 | 1.074761e-48 | -8.615850e-47 |
| Msa0182620 | Msa0416590 | -0.807950 | 3.934657e-50 | -8.615850e-47 |
| Msa0183830 | Msa0416590 | 0.800402 | 1.465475e-48 | -8.615850e-47 |
| Msa0193890 | Msa0416590 | 0.806351 | 8.582497e-50 | -8.615850e-47 |
| Msa0197420 | Msa0416590 | 0.844705 | 6.408770e-59 | -8.615850e-47 |
| Msa0197890 | Msa0416590 | 0.827355 | 1.638099e-54 | -8.615850e-47 |
| Msa0197930 | Msa0416590 | 0.810662 | 1.031184e-50 | -8.615850e-47 |
| Msa0203030 | Msa0416590 | 0.812532 | 4.043063e-51 | -8.615850e-47 |
| Msa0219190 | Msa0416590 | 0.805396 | 1.362378e-49 | -8.615850e-47 |
| Msa0369170 | Msa0416590 | 0.918695 | 1.133679e-86 | -8.615850e-47 |
| Msa0392420 | Msa0416590 | 0.805513 | 1.287605e-49 | -8.615850e-47 |
| Msa0392460 | Msa0416590 | 0.808485 | 3.026473e-50 | -8.615850e-47 |
| Msa0392490 | Msa0416590 | 0.811951 | 5.414741e-51 | -8.615850e-47 |
| Msa0410500 | Msa0416590 | 0.808660 | 2.776304e-50 | -8.615850e-47 |
| Msa0416590 | Msa0419820 | 0.803661 | 3.133880e-49 | -8.615850e-47 |
| Msa0416590 | Msa0422850 | 0.804715 | 1.890905e-49 | -8.615850e-47 |
| Msa0416590 | Msa0422930 | 0.803079 | 4.136396e-49 | -8.615850e-47 |
| Msa0416590 | Msa0463210 | 0.845509 | 3.885253e-59 | -8.615850e-47 |
| Msa0416590 | Msa0475790 | 0.806789 | 6.934833e-50 | -8.615850e-47 |
| Msa0416590 | Msa0487570 | 0.803360 | 3.618921e-49 | -8.615850e-47 |
| Msa0416590 | Msa0487630 | 0.811837 | 5.734333e-51 | -8.615850e-47 |
| Msa0416590 | Msa0508830 | 0.819858 | 9.311864e-53 | -8.615850e-47 |
| Msa0416590 | Msa0509610 | 0.815335 | 9.745774e-52 | -8.615850e-47 |
| Msa0416590 | Msa0521880 | 0.805673 | 1.191410e-49 | -8.615850e-47 |
| Msa0416590 | Msa0527550 | 0.802041 | 6.772332e-49 | -8.615850e-47 |
| Msa0416590 | Msa0535040 | 0.817268 | 3.601037e-52 | -8.615850e-47 |
| Msa0416590 | Msa0574890 | 0.838938 | 2.135286e-57 | -8.615850e-47 |
| Msa0416590 | Msa0576690 | 0.810233 | 1.276337e-50 | -8.615850e-47 |
| Msa0416590 | Msa0582450 | 0.816222 | 6.179485e-52 | -8.615850e-47 |
| Msa0416590 | Msa0586190 | 0.818230 | 2.185206e-52 | -8.615850e-47 |
| Msa0416590 | Msa0620990 | 0.808231 | 3.428417e-50 | -8.615850e-47 |
| Msa0416590 | Msa0642720 | 0.808714 | 2.703423e-50 | -8.615850e-47 |
| Msa0416590 | Msa0683570 | 0.801865 | 7.359920e-49 | -8.615850e-47 |
| Msa0416590 | Msa0701280 | 0.810150 | 1.329692e-50 | -8.615850e-47 |
| Msa0416590 | Msa0785210 | 0.801180 | 1.016981e-48 | -8.615850e-47 |
| Msa0416590 | Msa0813740 | 0.800268 | 1.560540e-48 | -8.615850e-47 |
| Msa0416590 | Msa0828560 | 0.800098 | 1.690402e-48 | -8.615850e-47 |
| Msa0416590 | Msa0844560 | 0.800351 | 1.501000e-48 | -8.615850e-47 |
| Msa0416590 | Msa0880140 | 0.805112 | 1.561912e-49 | -8.615850e-47 |
| Msa0416590 | Msa0896970 | 0.851761 | 7.190508e-61 | -8.615850e-47 |
| Msa0416590 | Msa0908050 | 0.803975 | 2.697006e-49 | -8.615850e-47 |
| Msa0416590 | Msa0930780 | 0.835476 | 1.641752e-56 | -8.615850e-47 |
| Msa0416590 | Msa0936340 | 0.836680 | 8.120901e-57 | -8.615850e-47 |
| Msa0416590 | Msa0961690 | 0.813045 | 3.121978e-51 | -8.615850e-47 |
| Msa0416590 | Msa0996960 | 0.802369 | 5.795486e-49 | -8.615850e-47 |
| Msa0416590 | Msa1012810 | 0.819982 | 8.725962e-53 | -8.615850e-47 |
| Msa0416590 | Msa1037920 | 0.843014 | 1.818026e-58 | -8.615850e-47 |
| Msa0416590 | Msa1041530 | 0.809559 | 1.782149e-50 | -8.615850e-47 |
| Msa0416590 | Msa1066490 | 0.823793 | 1.143867e-53 | -8.615850e-47 |
| Msa0416590 | Msa1097640 | 0.826558 | 2.539998e-54 | -8.615850e-47 |
| Msa0416590 | Msa1127140 | 0.806397 | 8.390445e-50 | -8.615850e-47 |
| Msa0416590 | Msa1129980 | 0.846098 | 2.688182e-59 | -8.615850e-47 |
| Msa0416590 | Msa1139810 | 0.835472 | 1.645387e-56 | -8.615850e-47 |
| Msa0416590 | Msa1157870 | 0.803726 | 3.037831e-49 | -8.615850e-47 |
| Msa0416590 | Msa1166400 | 0.817108 | 3.912170e-52 | -8.615850e-47 |
| Msa0416590 | Msa1169710 | 0.804386 | 2.214302e-49 | -8.615850e-47 |
| Msa0416590 | Msa1179940 | 0.824044 | 9.989063e-54 | -8.615850e-47 |
| Msa0416590 | Msa1179970 | 0.829984 | 3.790089e-55 | -8.615850e-47 |
| Msa0416590 | Msa1203710 | 0.800988 | 1.112815e-48 | -8.615850e-47 |
| Msa0416590 | Msa1231550 | 0.806870 | 6.667269e-50 | -8.615850e-47 |
| Msa0416590 | Msa1232710 | 0.806123 | 9.582883e-50 | -8.615850e-47 |
| Msa0416590 | Msa1236100 | 0.812635 | 3.838770e-51 | -8.615850e-47 |
| Msa0416590 | Msa1252190 | 0.820709 | 5.943929e-53 | -8.615850e-47 |
| Msa0416590 | Msa1261010 | 0.809354 | 1.971988e-50 | -8.615850e-47 |
| Msa0416590 | Msa1274060 | 0.819919 | 9.020155e-53 | -8.615850e-47 |
| Msa0416590 | Msa1274280 | 0.820299 | 7.381211e-53 | -8.615850e-47 |
| Msa0416590 | Msa1313300 | 0.805530 | 1.277093e-49 | -8.615850e-47 |
| Msa0416590 | Msa1323670 | 0.801704 | 7.941884e-49 | -8.615850e-47 |
| Msa0416590 | Msa1346370 | 0.809334 | 1.992138e-50 | -8.615850e-47 |
| Msa0416590 | Msa1374040 | 0.815546 | 8.744614e-52 | -8.615850e-47 |
| Msa0416590 | Msa1374550 | 0.806030 | 1.002810e-49 | -8.615850e-47 |
| Msa0416590 | Msa1406040 | 0.807975 | 3.887114e-50 | -8.615850e-47 |
| Msa0416590 | Msa1420060 | 0.804948 | 1.690318e-49 | -8.615850e-47 |
| Msa0416590 | Msa1430240 | 0.802790 | 4.746996e-49 | -8.615850e-47 |
| Msa0416590 | Msa1430280 | 0.818893 | 1.545139e-52 | -8.615850e-47 |
| Msa0416590 | Msa1437460 | 0.806508 | 7.950908e-50 | -8.615850e-47 |
| Msa0416590 | Msa1440260 | -0.817349 | 3.452583e-52 | -8.615850e-47 |
| Msa0416590 | Msa1459180 | 0.802827 | 4.663534e-49 | -8.615850e-47 |
| Msa0416590 | Msa1459380 | 0.825539 | 4.435954e-54 | -8.615850e-47 |
| Msa0239190 | Msa0416590 | 0.854196 | 1.445436e-61 | -8.615850e-47 |
| Msa0239570 | Msa0416590 | 0.817011 | 4.113220e-52 | -8.615850e-47 |
| Msa0248970 | Msa0416590 | 0.812384 | 4.355234e-51 | -8.615850e-47 |
| Msa0264870 | Msa0416590 | 0.801288 | 9.661939e-49 | -8.615850e-47 |
| Msa0274680 | Msa0416590 | 0.808041 | 3.763557e-50 | -8.615850e-47 |
| Msa0277180 | Msa0416590 | 0.829514 | 4.932084e-55 | -8.615850e-47 |
| Msa0292400 | Msa0416590 | 0.803495 | 3.393172e-49 | -8.615850e-47 |
| Msa0300120 | Msa0416590 | 0.803628 | 3.184254e-49 | -8.615850e-47 |
| Msa0316810 | Msa0416590 | 0.856987 | 2.217567e-62 | -8.615850e-47 |
| Msa0317250 | Msa0416590 | 0.803926 | 2.761083e-49 | -8.615850e-47 |
| Msa0317280 | Msa0416590 | 0.810351 | 1.203427e-50 | -8.615850e-47 |
| Msa0337620 | Msa0416590 | 0.808594 | 2.868075e-50 | -8.615850e-47 |
| Msa0344570 | Msa0416590 | 0.809699 | 1.662711e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416590 | MtrunA17_Chr3g0113401 | 96.591 | 264 | 1 | 1 | 1 | 264 | 1 | 256 | 0.0 | 525 |
| Msa0416590 | MtrunA17_Chr4g0006731 | 64.394 | 264 | 86 | 1 | 1 | 264 | 1 | 256 | 4.87e-125 | 356 |
| Msa0416590 | MtrunA17_Chr7g0242451 | 60.227 | 264 | 94 | 3 | 1 | 264 | 1 | 253 | 1.55e-115 | 332 |
| Msa0416590 | MtrunA17_Chr7g0242401 | 59.770 | 261 | 95 | 3 | 3 | 263 | 30 | 280 | 4.91e-112 | 323 |
| Msa0416590 | MtrunA17_Chr7g0242431 | 58.238 | 261 | 99 | 3 | 3 | 263 | 29 | 279 | 6.81e-109 | 316 |
| Msa0416590 | MtrunA17_Chr7g0242461 | 56.061 | 264 | 106 | 2 | 1 | 264 | 1 | 254 | 1.11e-107 | 311 |
| Msa0416590 | MtrunA17_Chr7g0242411 | 56.977 | 258 | 96 | 4 | 6 | 263 | 2 | 244 | 5.94e-102 | 297 |
| Msa0416590 | MtrunA17_Chr7g0242391 | 51.331 | 263 | 115 | 4 | 6 | 264 | 2 | 255 | 8.57e-93 | 274 |
| Msa0416590 | MtrunA17_Chr2g0283411 | 35.135 | 222 | 124 | 6 | 6 | 217 | 4 | 215 | 6.47e-40 | 138 |
| Msa0416590 | MtrunA17_Chr2g0283421 | 35.160 | 219 | 128 | 3 | 5 | 217 | 4 | 214 | 1.87e-39 | 137 |
| Msa0416590 | MtrunA17_Chr7g0242441 | 34.902 | 255 | 94 | 6 | 6 | 260 | 3 | 185 | 1.91e-37 | 130 |
| Msa0416590 | MtrunA17_Chr4g0059001 | 33.333 | 225 | 128 | 5 | 24 | 240 | 47 | 257 | 1.99e-31 | 117 |
| Msa0416590 | MtrunA17_Chr2g0283391 | 30.601 | 183 | 100 | 5 | 41 | 217 | 1 | 162 | 1.80e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416590 | AT3G11210.1 | 68.561 | 264 | 75 | 1 | 1 | 264 | 1 | 256 | 3.48e-139 | 392 |
| Msa0416590 | AT2G38180.1 | 59.664 | 238 | 82 | 3 | 1 | 236 | 1 | 226 | 2.31e-99 | 293 |
| Msa0416590 | AT5G62930.1 | 36.667 | 240 | 135 | 4 | 6 | 240 | 2 | 229 | 5.94e-52 | 170 |
| Msa0416590 | AT5G62930.2 | 36.667 | 240 | 135 | 4 | 6 | 240 | 28 | 255 | 1.50e-51 | 169 |
| Msa0416590 | AT5G45920.1 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0416590 | AT5G45920.4 | 40.455 | 220 | 112 | 6 | 6 | 217 | 3 | 211 | 2.55e-47 | 158 |
| Msa0416590 | AT5G45920.2 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0416590 | AT5G45920.3 | 39.286 | 196 | 100 | 6 | 6 | 193 | 3 | 187 | 1.31e-38 | 134 |
| Msa0416590 | AT5G62930.3 | 30.818 | 159 | 97 | 2 | 65 | 218 | 3 | 153 | 4.90e-25 | 98.6 |
Find 71 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3_2:+63515881 | Msa0416590:CDS |
| TTAAATGTCAAGAAACATTT+TGG | 0.201471 | 3_2:+63513521 | Msa0416590:five_prime_UTR |
| TTATCATGTATTTGTTATTC+AGG | 0.220370 | 3_2:+63517927 | Msa0416590:three_prime_UTR |
| AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3_2:+63515982 | Msa0416590:CDS |
| TGCTTCCCTCGGCTGCTAAA+TGG | 0.258371 | 3_2:-63517533 | None:intergenic |
| AACATTATGGTTGGTTTGTT+AGG | 0.273179 | 3_2:-63513584 | None:intergenic |
| ACCAACCATAATGTTTGATT+TGG | 0.292289 | 3_2:+63513592 | Msa0416590:five_prime_UTR |
| CGGTTTGGCGCTGCCTGCTT+TGG | 0.298101 | 3_2:+63513674 | Msa0416590:five_prime_UTR |
| CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3_2:+63517716 | Msa0416590:CDS |
| ATTCATCTAAGTTATTATAA+AGG | 0.332921 | 3_2:-63517995 | None:intergenic |
| GTGGAAACTGCTAAAATATA+AGG | 0.360830 | 3_2:-63517754 | None:intergenic |
| AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3_2:+63517569 | Msa0416590:CDS |
| GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3_2:-63515058 | None:intergenic |
| ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3_2:-63515067 | None:intergenic |
| CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3_2:+63513864 | Msa0416590:CDS |
| AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3_2:+63513823 | Msa0416590:CDS |
| TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3_2:+63515914 | Msa0416590:CDS |
| CGTTGACCCTCCACAAGCTT+AGG | 0.409304 | 3_2:+63513648 | Msa0416590:five_prime_UTR |
| CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3_2:+63516944 | Msa0416590:CDS |
| TATCATGTATTTGTTATTCA+GGG | 0.440442 | 3_2:+63517928 | Msa0416590:three_prime_UTR |
| GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3_2:+63515920 | Msa0416590:CDS |
| GTTCAGTGGGATTAGGATGT+TGG | 0.444644 | 3_2:+63517723 | Msa0416590:exon |
| AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3_2:-63513817 | None:intergenic |
| GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3_2:-63513873 | None:intergenic |
| TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3_2:-63516873 | None:intergenic |
| TTCAGTGGGATTAGGATGTT+GGG | 0.461381 | 3_2:+63517724 | Msa0416590:exon |
| CACAAGCTTAGGAAGCGGTT+TGG | 0.465041 | 3_2:+63513659 | Msa0416590:five_prime_UTR |
| ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3_2:+63517598 | Msa0416590:CDS |
| ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3_2:+63516945 | Msa0416590:CDS |
| AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3_2:-63513890 | None:intergenic |
| CAAGACAAAGAGGCAGAAGA+AGG | 0.474860 | 3_2:-63513703 | None:intergenic |
| TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3_2:+63517657 | Msa0416590:CDS |
| AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3_2:+63513865 | Msa0416590:CDS |
| ACCAAATCAAACATTATGGT+TGG | 0.483172 | 3_2:-63513593 | None:intergenic |
| AAGAAGGAAAAGACCAAAGC+AGG | 0.484171 | 3_2:-63513687 | None:intergenic |
| TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3_2:+63513897 | Msa0416590:CDS |
| AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3_2:+63517580 | Msa0416590:CDS |
| CCCTCCACAAGCTTAGGAAG+CGG | 0.524309 | 3_2:+63513654 | Msa0416590:five_prime_UTR |
| ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3_2:+63516895 | Msa0416590:CDS |
| CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3_2:+63513859 | Msa0416590:CDS |
| CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3_2:-63517700 | None:intergenic |
| TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3_2:+63513863 | Msa0416590:CDS |
| TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3_2:-63515953 | None:intergenic |
| ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3_2:-63515915 | None:intergenic |
| ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3_2:+63517658 | Msa0416590:CDS |
| TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3_2:+63515899 | Msa0416590:CDS |
| GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3_2:-63513826 | None:intergenic |
| AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3_2:-63515878 | None:intergenic |
| CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3_2:-63517696 | None:intergenic |
| TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3_2:-63515944 | None:intergenic |
| ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3_2:-63517606 | None:intergenic |
| ACCGCTTCCTAAGCTTGTGG+AGG | 0.589333 | 3_2:-63513655 | None:intergenic |
| TGGTATCCATTTAGCAGCCG+AGG | 0.597982 | 3_2:+63517527 | Msa0416590:CDS |
| CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3_2:+63516888 | Msa0416590:CDS |
| ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3_2:+63515014 | Msa0416590:CDS |
| GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3_2:+63517572 | Msa0416590:CDS |
| CCGCTTCCTAAGCTTGTGGA+GGG | 0.617976 | 3_2:-63513654 | None:intergenic |
| TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3_2:+63515018 | Msa0416590:CDS |
| GGTATCCATTTAGCAGCCGA+GGG | 0.630946 | 3_2:+63517528 | Msa0416590:CDS |
| CAAACCGCTTCCTAAGCTTG+TGG | 0.636079 | 3_2:-63513658 | None:intergenic |
| GTACATCATATAACTTACAC+TGG | 0.636627 | 3_2:-63517961 | None:intergenic |
| CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3_2:-63517614 | None:intergenic |
| ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3_2:-63515943 | None:intergenic |
| AGCCGAGGGAAGCAAAATTG+TGG | 0.643278 | 3_2:+63517542 | Msa0416590:CDS |
| ATACGTAAGACAAGACAAAG+AGG | 0.655549 | 3_2:-63513713 | None:intergenic |
| CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3_2:-63515064 | None:intergenic |
| GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3_2:-63513851 | None:intergenic |
| TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3_2:+63515005 | Msa0416590:intron |
| TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3_2:-63517611 | None:intergenic |
| GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3_2:+63517685 | Msa0416590:CDS |
| GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3_2:-63515923 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTATATTTCAAAA+AGG | - | chr3_2:63514059-63514078 | None:intergenic | 10.0% |
| !!! | TTTGAAATATACAATTATTT+TGG | + | chr3_2:63514060-63514079 | Msa0416590:intron | 10.0% |
| !!! | TTGAAATATACAATTATTTT+GGG | + | chr3_2:63514061-63514080 | Msa0416590:intron | 10.0% |
| !!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3_2:63514481-63514500 | Msa0416590:intron | 10.0% |
| !!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3_2:63514840-63514859 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTAAATATGCAT+AGG | + | chr3_2:63515378-63515397 | Msa0416590:intron | 10.0% |
| !!! | TATATTTTTCATCATTATTA+AGG | - | chr3_2:63516535-63516554 | None:intergenic | 10.0% |
| !!! | AAAAATATTGATTTGTTATA+TGG | + | chr3_2:63517796-63517815 | Msa0416590:three_prime_UTR | 10.0% |
| !!! | AAAATACTAGATTAATGTTT+TGG | + | chr3_2:63514004-63514023 | Msa0416590:intron | 15.0% |
| !!! | AAATACTAGATTAATGTTTT+GGG | + | chr3_2:63514005-63514024 | Msa0416590:intron | 15.0% |
| !!! | TGTATAATTTTGAAAACTTT+TGG | + | chr3_2:63514138-63514157 | Msa0416590:intron | 15.0% |
| !!! | GTATAATTTTGAAAACTTTT+GGG | + | chr3_2:63514139-63514158 | Msa0416590:intron | 15.0% |
| !!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3_2:63514140-63514159 | Msa0416590:intron | 15.0% |
| !!! | AAGATTTAAAAAAAAGTACA+AGG | - | chr3_2:63514319-63514338 | None:intergenic | 15.0% |
| !!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3_2:63514692-63514711 | None:intergenic | 15.0% |
| !! | ATAATTTAATACTCTTACAT+TGG | + | chr3_2:63514843-63514862 | Msa0416590:intron | 15.0% |
| !! | AAAATAAAAATCATATACGA+TGG | - | chr3_2:63515367-63515386 | None:intergenic | 15.0% |
| !! | AATAAAATTGATTAAGAAAG+AGG | - | chr3_2:63517000-63517019 | None:intergenic | 15.0% |
| !! | TTTCTTGTGAAATATATTAA+AGG | + | chr3_2:63517389-63517408 | Msa0416590:intron | 15.0% |
| !!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3_2:63517441-63517460 | Msa0416590:intron | 15.0% |
| !!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3_2:63517442-63517461 | Msa0416590:intron | 15.0% |
| !! | TTTAAAGAAAAACTTAAACA+AGG | - | chr3_2:63517779-63517798 | None:intergenic | 15.0% |
| !! | ATTCATCTAAGTTATTATAA+AGG | - | chr3_2:63517998-63518017 | None:intergenic | 15.0% |
| !!! | TTAAATGTCAAGAAACATTT+TGG | + | chr3_2:63513521-63513540 | Msa0416590:five_prime_UTR | 20.0% |
| !! | AAAAACCAAATCAAACATTA+TGG | - | chr3_2:63513600-63513619 | None:intergenic | 20.0% |
| !! | TACTATAAGAAAATCAATCA+TGG | - | chr3_2:63514388-63514407 | None:intergenic | 20.0% |
| !!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3_2:63514398-63514417 | Msa0416590:intron | 20.0% |
| !! | TTATATTTAGCAATTTGAGA+AGG | - | chr3_2:63514519-63514538 | None:intergenic | 20.0% |
| !! | TTCTCAAATTGCTAAATATA+AGG | + | chr3_2:63514518-63514537 | Msa0416590:intron | 20.0% |
| !!! | GATGTAAAATTACTCATTTT+AGG | + | chr3_2:63514986-63515005 | Msa0416590:intron | 20.0% |
| !!! | TTTCTAAAGACACAATATTA+AGG | + | chr3_2:63515220-63515239 | Msa0416590:intron | 20.0% |
| !!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3_2:63516736-63516755 | None:intergenic | 20.0% |
| !!! | TTATCATGTATTTGTTATTC+AGG | + | chr3_2:63517927-63517946 | Msa0416590:three_prime_UTR | 20.0% |
| !!! | TATCATGTATTTGTTATTCA+GGG | + | chr3_2:63517928-63517947 | Msa0416590:three_prime_UTR | 20.0% |
| ! | TAAAGGGTTAAAAAGAAAGA+AGG | - | chr3_2:63513739-63513758 | None:intergenic | 25.0% |
| ! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3_2:63514424-63514443 | Msa0416590:intron | 25.0% |
| ! | CAAATTGCTAAATATAAGGT+TGG | + | chr3_2:63514522-63514541 | Msa0416590:intron | 25.0% |
| ! | ACAAAACAAAAAATCACAGT+TGG | - | chr3_2:63514613-63514632 | None:intergenic | 25.0% |
| !!! | GTGATTTTTTGTTTTGTTTG+TGG | + | chr3_2:63514616-63514635 | Msa0416590:intron | 25.0% |
| !! | TATTAATGGAGTATTTGTAC+AGG | - | chr3_2:63514826-63514845 | None:intergenic | 25.0% |
| ! | TTAATACTCTTACATTGGTA+TGG | + | chr3_2:63514848-63514867 | Msa0416590:intron | 25.0% |
| ! | AAGGAAAAAAAATCATGATC+AGG | - | chr3_2:63514907-63514926 | None:intergenic | 25.0% |
| ! | CGTCATCAAAGTTAATATTA+TGG | + | chr3_2:63514937-63514956 | Msa0416590:intron | 25.0% |
| ! | CATCAAAGTTAATATTATGG+AGG | + | chr3_2:63514940-63514959 | Msa0416590:intron | 25.0% |
| ! | AAATTAGGTACAATACCTTT+GGG | - | chr3_2:63515082-63515101 | None:intergenic | 25.0% |
| ! | CTTGTATTCAACATGATTTA+TGG | + | chr3_2:63515153-63515172 | Msa0416590:intron | 25.0% |
| !! | TTGTGTCTTTAGAAATTAAG+CGG | - | chr3_2:63515215-63515234 | None:intergenic | 25.0% |
| !!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3_2:63515461-63515480 | None:intergenic | 25.0% |
| ! | GAGATAGTAAGTAAAACATA+TGG | - | chr3_2:63515496-63515515 | None:intergenic | 25.0% |
| !! | TTTTACTTACTATCTCTCTT+AGG | + | chr3_2:63515500-63515519 | Msa0416590:intron | 25.0% |
| ! | TTTACTTACTATCTCTCTTA+GGG | + | chr3_2:63515501-63515520 | Msa0416590:intron | 25.0% |
| ! | GTTGAAATAATCTATGGAAA+CGG | + | chr3_2:63515579-63515598 | Msa0416590:intron | 25.0% |
| ! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3_2:63515764-63515783 | Msa0416590:intron | 25.0% |
| ! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3_2:63515765-63515784 | Msa0416590:intron | 25.0% |
| ! | AAATAAACTATGACAAGAGA+AGG | - | chr3_2:63515881-63515900 | None:intergenic | 25.0% |
| !! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3_2:63515881-63515900 | Msa0416590:CDS | 25.0% |
| ! | ATATATTCCATTACATTGGA+AGG | - | chr3_2:63516139-63516158 | None:intergenic | 25.0% |
| ! | CAAGATATATTCCATTACAT+TGG | - | chr3_2:63516143-63516162 | None:intergenic | 25.0% |
| ! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3_2:63516322-63516341 | Msa0416590:intron | 25.0% |
| ! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3_2:63516369-63516388 | Msa0416590:intron | 25.0% |
| ! | AATACATGGATAATAGTTTG+AGG | + | chr3_2:63516383-63516402 | Msa0416590:intron | 25.0% |
| ! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3_2:63516441-63516460 | Msa0416590:intron | 25.0% |
| !!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3_2:63516823-63516842 | None:intergenic | 25.0% |
| ! | ACTACAAAGTATAGATGATT+GGG | + | chr3_2:63516945-63516964 | Msa0416590:CDS | 25.0% |
| ! | ACTTGATATTTCTTGGTATT+TGG | - | chr3_2:63517026-63517045 | None:intergenic | 25.0% |
| ! | CAAACAATAACTTAGACTAA+AGG | - | chr3_2:63517220-63517239 | None:intergenic | 25.0% |
| !! | GATATCAATTTTGTCTCTTA+CGG | + | chr3_2:63517260-63517279 | Msa0416590:intron | 25.0% |
| !!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3_2:63517438-63517457 | None:intergenic | 25.0% |
| !!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3_2:63517569-63517588 | Msa0416590:CDS | 25.0% |
| ! | AAAGAAAAACTTAAACAAGG+TGG | - | chr3_2:63517776-63517795 | None:intergenic | 25.0% |
| !! | AAACATTTTGGCAAGCATTA+AGG | + | chr3_2:63513533-63513552 | Msa0416590:five_prime_UTR | 30.0% |
| !! | AACATTATGGTTGGTTTGTT+AGG | - | chr3_2:63513587-63513606 | None:intergenic | 30.0% |
| ACCAACCATAATGTTTGATT+TGG | + | chr3_2:63513592-63513611 | Msa0416590:five_prime_UTR | 30.0% | |
| ACCAAATCAAACATTATGGT+TGG | - | chr3_2:63513596-63513615 | None:intergenic | 30.0% | |
| AGAATAGATGTCAGAAAGAA+AGG | - | chr3_2:63513893-63513912 | None:intergenic | 30.0% | |
| GTATATTTCAAAAAGGCAGA+AGG | - | chr3_2:63514052-63514071 | None:intergenic | 30.0% | |
| TTGGGCTATGTTTAAGAAAA+TGG | + | chr3_2:63514079-63514098 | Msa0416590:intron | 30.0% | |
| TGGGCTATGTTTAAGAAAAT+GGG | + | chr3_2:63514080-63514099 | Msa0416590:intron | 30.0% | |
| !! | TTTTGAAAACTTTTGGGGAA+AGG | + | chr3_2:63514145-63514164 | Msa0416590:intron | 30.0% |
| CAATATTGAAACTCACTACT+GGG | - | chr3_2:63514250-63514269 | None:intergenic | 30.0% | |
| ACAATATTGAAACTCACTAC+TGG | - | chr3_2:63514251-63514270 | None:intergenic | 30.0% | |
| ! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3_2:63514527-63514546 | Msa0416590:intron | 30.0% |
| ATATTGTTACGAGGATACTA+CGG | + | chr3_2:63515014-63515033 | Msa0416590:CDS | 30.0% | |
| CAAATTAGGTACAATACCTT+TGG | - | chr3_2:63515083-63515102 | None:intergenic | 30.0% | |
| !! | CAAAGGTATTGTACCTAATT+TGG | + | chr3_2:63515081-63515100 | Msa0416590:intron | 30.0% |
| GTATTCAACATGATTTATGG+TGG | + | chr3_2:63515156-63515175 | Msa0416590:intron | 30.0% | |
| TACGCATAGATAAACTTGAT+TGG | - | chr3_2:63515259-63515278 | None:intergenic | 30.0% | |
| ATTAGGCAATTGTTCGTTAT+GGG | - | chr3_2:63515297-63515316 | None:intergenic | 30.0% | |
| TAGAATAGTATATACGCTAC+CGG | - | chr3_2:63515326-63515345 | None:intergenic | 30.0% | |
| GAGACTGTTGAAATAATCTA+TGG | + | chr3_2:63515573-63515592 | Msa0416590:intron | 30.0% | |
| ! | ACATGTCCATAAACTGTTTT+CGG | + | chr3_2:63515608-63515627 | Msa0416590:intron | 30.0% |
| !! | GGCTTGTTTCTATAAGTTTA+AGG | + | chr3_2:63515629-63515648 | Msa0416590:intron | 30.0% |
| CAAAAATTATTGTATGGTGC+AGG | - | chr3_2:63515830-63515849 | None:intergenic | 30.0% | |
| GTGGGACAAAAATTATTGTA+TGG | - | chr3_2:63515836-63515855 | None:intergenic | 30.0% | |
| !!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3_2:63515884-63515903 | Msa0416590:CDS | 30.0% |
| TTTGCGATATATTCTTCAAG+TGG | - | chr3_2:63515956-63515975 | None:intergenic | 30.0% | |
| AAAGATTCTCGTTCATATTC+AGG | + | chr3_2:63515982-63516001 | Msa0416590:CDS | 30.0% | |
| AGATATCTATCTCCAATACT+TGG | - | chr3_2:63516055-63516074 | None:intergenic | 30.0% | |
| TGTTAAACCTTCCAATGTAA+TGG | + | chr3_2:63516129-63516148 | Msa0416590:intron | 30.0% | |
| ! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3_2:63516363-63516382 | None:intergenic | 30.0% |
| ! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3_2:63516364-63516383 | None:intergenic | 30.0% |
| AGTGAAAAATGACATGTTGT+AGG | + | chr3_2:63516482-63516501 | Msa0416590:intron | 30.0% | |
| !! | AAAATATGTTTTAGGCTACC+TGG | - | chr3_2:63516728-63516747 | None:intergenic | 30.0% |
| CACTACAAAGTATAGATGAT+TGG | + | chr3_2:63516944-63516963 | Msa0416590:CDS | 30.0% | |
| ! | GTATGTCACTTGATATTTCT+TGG | - | chr3_2:63517033-63517052 | None:intergenic | 30.0% |
| AGAAAAGTTAGTGAAGGATT+TGG | - | chr3_2:63517077-63517096 | None:intergenic | 30.0% | |
| TACTTGAGAAAAGTTAGTGA+AGG | - | chr3_2:63517083-63517102 | None:intergenic | 30.0% | |
| TAACCTTAAAATCGTCTTTC+CGG | - | chr3_2:63517306-63517325 | None:intergenic | 30.0% | |
| AAGGTTACTTCAATGATGTT+AGG | + | chr3_2:63517319-63517338 | Msa0416590:intron | 30.0% | |
| TTCAATGAATTATGCAGTGA+TGG | + | chr3_2:63517507-63517526 | Msa0416590:intron | 30.0% | |
| !! | GATATTGAAAGTACTTAAGG+AGG | + | chr3_2:63517572-63517591 | Msa0416590:CDS | 30.0% |
| GTGGAAACTGCTAAAATATA+AGG | - | chr3_2:63517757-63517776 | None:intergenic | 30.0% | |
| GTACATCATATAACTTACAC+TGG | - | chr3_2:63517964-63517983 | None:intergenic | 30.0% | |
| ATACGTAAGACAAGACAAAG+AGG | - | chr3_2:63513716-63513735 | None:intergenic | 35.0% | |
| !! | GATGAGTGATCGCTTTTAAA+GGG | - | chr3_2:63513755-63513774 | None:intergenic | 35.0% |
| !! | TGATGAGTGATCGCTTTTAA+AGG | - | chr3_2:63513756-63513775 | None:intergenic | 35.0% |
| ! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3_2:63513823-63513842 | Msa0416590:CDS | 35.0% |
| TTCTGACATCTATTCTCGTA+AGG | + | chr3_2:63513897-63513916 | Msa0416590:CDS | 35.0% | |
| !!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3_2:63513952-63513971 | Msa0416590:intron | 35.0% |
| GAAAGGAGTAACTAGTAGTA+AGG | + | chr3_2:63514162-63514181 | Msa0416590:intron | 35.0% | |
| CCAACATCAATTCTTTCCTT+GGG | - | chr3_2:63514213-63514232 | None:intergenic | 35.0% | |
| CCAAGGAAAGAATTGATGTT+GGG | + | chr3_2:63514211-63514230 | Msa0416590:intron | 35.0% | |
| CAAGGAAAGAATTGATGTTG+GGG | + | chr3_2:63514212-63514231 | Msa0416590:intron | 35.0% | |
| !! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3_2:63514276-63514295 | Msa0416590:intron | 35.0% |
| !!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3_2:63514277-63514296 | Msa0416590:intron | 35.0% |
| ! | GTACAAGGTCATTACTCTTT+TGG | - | chr3_2:63514304-63514323 | None:intergenic | 35.0% |
| GATTTAAGGATTGGAGTGAT+AGG | + | chr3_2:63514563-63514582 | Msa0416590:intron | 35.0% | |
| AAAAAATCACAGTTGGAGTG+GGG | - | chr3_2:63514606-63514625 | None:intergenic | 35.0% | |
| CAAAAAATCACAGTTGGAGT+GGG | - | chr3_2:63514607-63514626 | None:intergenic | 35.0% | |
| ACAAAAAATCACAGTTGGAG+TGG | - | chr3_2:63514608-63514627 | None:intergenic | 35.0% | |
| TAGGCAGATATATTGTTACG+AGG | + | chr3_2:63515005-63515024 | Msa0416590:intron | 35.0% | |
| ! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3_2:63515070-63515089 | None:intergenic | 35.0% |
| ATGCAGATATCTGCCAAATT+AGG | - | chr3_2:63515097-63515116 | None:intergenic | 35.0% | |
| TCAAGTTTATCTATGCGTAG+TGG | + | chr3_2:63515260-63515279 | Msa0416590:intron | 35.0% | |
| GATTAGGCAATTGTTCGTTA+TGG | - | chr3_2:63515298-63515317 | None:intergenic | 35.0% | |
| TATCTCTCTTAGGGTATGTT+TGG | + | chr3_2:63515510-63515529 | Msa0416590:intron | 35.0% | |
| AACAAGCCGAAAACAGTTTA+TGG | - | chr3_2:63515617-63515636 | None:intergenic | 35.0% | |
| ! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3_2:63515726-63515745 | Msa0416590:intron | 35.0% |
| ! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3_2:63515727-63515746 | Msa0416590:intron | 35.0% |
| ! | TAATTTTTGTCCCACTTCAC+AGG | + | chr3_2:63515841-63515860 | Msa0416590:intron | 35.0% |
| TATCTATCTCCAATACTTGG+AGG | - | chr3_2:63516052-63516071 | None:intergenic | 35.0% | |
| GGAATATATCTTGTCTTACC+CGG | + | chr3_2:63516150-63516169 | Msa0416590:intron | 35.0% | |
| GAATATATCTTGTCTTACCC+GGG | + | chr3_2:63516151-63516170 | Msa0416590:intron | 35.0% | |
| GTGTACTCAATGATGAAACA+TGG | + | chr3_2:63516209-63516228 | Msa0416590:intron | 35.0% | |
| ! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3_2:63516362-63516381 | None:intergenic | 35.0% |
| CATGTTGTAGGATGAAAGAA+TGG | + | chr3_2:63516494-63516513 | Msa0416590:intron | 35.0% | |
| !!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3_2:63516831-63516850 | Msa0416590:intron | 35.0% |
| ATAAAGCTATGCAAGGAACT+TGG | + | chr3_2:63516895-63516914 | Msa0416590:CDS | 35.0% | |
| TCTATATAACCAACTCCTTC+TGG | + | chr3_2:63517186-63517205 | Msa0416590:intron | 35.0% | |
| AACCTTAAAATCGTCTTTCC+GGG | - | chr3_2:63517305-63517324 | None:intergenic | 35.0% | |
| TACAAGTTATGTCAGGTTAG+AGG | - | chr3_2:63517431-63517450 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGACCAAAGC+AGG | - | chr3_2:63513690-63513709 | None:intergenic | 40.0% | |
| !! | AACCATGTTTTTGCTTCTGG+TGG | - | chr3_2:63513794-63513813 | None:intergenic | 40.0% |
| !! | TGCAACCATGTTTTTGCTTC+TGG | - | chr3_2:63513797-63513816 | None:intergenic | 40.0% |
| AGAACAAATTGAGGTCTTGC+AGG | - | chr3_2:63513820-63513839 | None:intergenic | 40.0% | |
| GATCCGAAGAGAACAAATTG+AGG | - | chr3_2:63513829-63513848 | None:intergenic | 40.0% | |
| AAGTGCCTATTGTAGCTTGA+GGG | - | chr3_2:63514190-63514209 | None:intergenic | 40.0% | |
| CCCAAGGAAAGAATTGATGT+TGG | + | chr3_2:63514210-63514229 | Msa0416590:intron | 40.0% | |
| CCCAACATCAATTCTTTCCT+TGG | - | chr3_2:63514214-63514233 | None:intergenic | 40.0% | |
| TGGTCCCACTCAAAAAGATA+AGG | - | chr3_2:63514284-63514303 | None:intergenic | 40.0% | |
| !! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3_2:63514535-63514554 | Msa0416590:intron | 40.0% |
| !! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3_2:63514536-63514555 | Msa0416590:intron | 40.0% |
| TAGGGTGGAGATTTAAGGAT+TGG | + | chr3_2:63514554-63514573 | Msa0416590:intron | 40.0% | |
| CAAGACATGTTGCAATAACG+AGG | - | chr3_2:63514725-63514744 | None:intergenic | 40.0% | |
| CTCGTTATTGCAACATGTCT+TGG | + | chr3_2:63514723-63514742 | Msa0416590:intron | 40.0% | |
| ATTCTCCTAAGAGATGCTCA+TGG | + | chr3_2:63514782-63514801 | Msa0416590:intron | 40.0% | |
| AATCACCATGAGCATCTCTT+AGG | - | chr3_2:63514790-63514809 | None:intergenic | 40.0% | |
| TGGCAAATATGTGTGTGAAG+TGG | + | chr3_2:63514868-63514887 | Msa0416590:intron | 40.0% | |
| !! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3_2:63514926-63514945 | None:intergenic | 40.0% |
| !! | CATGATTTATGGTGGATGCA+CGG | + | chr3_2:63515164-63515183 | Msa0416590:intron | 40.0% |
| ! | GTTCGTTATGGGTTTTTGTC+CGG | - | chr3_2:63515286-63515305 | None:intergenic | 40.0% |
| ACAATTGCCTAATCTTCCTC+CGG | + | chr3_2:63515304-63515323 | Msa0416590:intron | 40.0% | |
| AATAGTATATACGCTACCGG+AGG | - | chr3_2:63515323-63515342 | None:intergenic | 40.0% | |
| TAGGATTACCAGCTCTACAT+TGG | + | chr3_2:63515397-63515416 | Msa0416590:intron | 40.0% | |
| CTGCACGAACTTATACAAAC+AGG | - | chr3_2:63515425-63515444 | None:intergenic | 40.0% | |
| CTGTTTGTATAAGTTCGTGC+AGG | + | chr3_2:63515423-63515442 | Msa0416590:intron | 40.0% | |
| ! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3_2:63515728-63515747 | Msa0416590:intron | 40.0% |
| AATTATTGTATGGTGCAGGC+AGG | - | chr3_2:63515826-63515845 | None:intergenic | 40.0% | |
| !! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3_2:63515898-63515917 | Msa0416590:CDS | 40.0% |
| TTTGGAGGCAATGATTCCAT+GGG | + | chr3_2:63515899-63515918 | Msa0416590:CDS | 40.0% | |
| ATTCTTCAAGTGGCACATGA+GGG | - | chr3_2:63515946-63515965 | None:intergenic | 40.0% | |
| TATTCTTCAAGTGGCACATG+AGG | - | chr3_2:63515947-63515966 | None:intergenic | 40.0% | |
| CAATACTTGGAGGACACTAA+TGG | - | chr3_2:63516042-63516061 | None:intergenic | 40.0% | |
| CATTAGTGTCCTCCAAGTAT+TGG | + | chr3_2:63516040-63516059 | Msa0416590:intron | 40.0% | |
| !! | GAAACAATTTTGGAGAACCC+GGG | - | chr3_2:63516171-63516190 | None:intergenic | 40.0% |
| !! | CGAAACAATTTTGGAGAACC+CGG | - | chr3_2:63516172-63516191 | None:intergenic | 40.0% |
| ! | TGTGCGCAACGAAACAATTT+TGG | - | chr3_2:63516181-63516200 | None:intergenic | 40.0% |
| ! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3_2:63516361-63516380 | None:intergenic | 40.0% |
| AGTAACAAGTCAAACGGATG+AGG | + | chr3_2:63516447-63516466 | Msa0416590:intron | 40.0% | |
| GTAACAAGTCAAACGGATGA+GGG | + | chr3_2:63516448-63516467 | Msa0416590:intron | 40.0% | |
| ! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3_2:63516657-63516676 | None:intergenic | 40.0% |
| !! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3_2:63516694-63516713 | None:intergenic | 40.0% |
| TACAAGCGTCAGAATAGCTT+CGG | - | chr3_2:63516876-63516895 | None:intergenic | 40.0% | |
| CGCTTGTATAAAGCTATGCA+AGG | + | chr3_2:63516888-63516907 | Msa0416590:CDS | 40.0% | |
| TCGATGCTTTCTTTGCTAGA+TGG | + | chr3_2:63517115-63517134 | Msa0416590:intron | 40.0% | |
| ATATAACCAACTCCTTCTGG+TGG | + | chr3_2:63517189-63517208 | Msa0416590:intron | 40.0% | |
| TATAACCAACTCCTTCTGGT+GGG | + | chr3_2:63517190-63517209 | Msa0416590:intron | 40.0% | |
| ! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3_2:63517284-63517303 | Msa0416590:intron | 40.0% |
| ! | TACCCGGAAAGACGATTTTA+AGG | + | chr3_2:63517300-63517319 | Msa0416590:intron | 40.0% |
| CAGGTTAGAGGACACTAAAA+AGG | - | chr3_2:63517419-63517438 | None:intergenic | 40.0% | |
| AAGTACTTAAGGAGGCTGAT+TGG | + | chr3_2:63517580-63517599 | Msa0416590:CDS | 40.0% | |
| TATGATCTTGTTGCTGCTGA+TGG | + | chr3_2:63517657-63517676 | Msa0416590:CDS | 40.0% | |
| ATGATCTTGTTGCTGCTGAT+GGG | + | chr3_2:63517658-63517677 | Msa0416590:CDS | 40.0% | |
| ! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3_2:63517710-63517729 | Msa0416590:CDS | 40.0% |
| TTCAGTGGGATTAGGATGTT+GGG | + | chr3_2:63517724-63517743 | Msa0416590:exon | 40.0% | |
| CAAGACAAAGAGGCAGAAGA+AGG | - | chr3_2:63513706-63513725 | None:intergenic | 45.0% | |
| CACCACCAGAAGCAAAAACA+TGG | + | chr3_2:63513789-63513808 | Msa0416590:exon | 45.0% | |
| TCAGTTACAGCCATAGTGGT+TGG | + | chr3_2:63513863-63513882 | Msa0416590:CDS | 45.0% | |
| CAGTTACAGCCATAGTGGTT+GGG | + | chr3_2:63513864-63513883 | Msa0416590:CDS | 45.0% | |
| AGTTACAGCCATAGTGGTTG+GGG | + | chr3_2:63513865-63513884 | Msa0416590:CDS | 45.0% | |
| AGTGCCTATTGTAGCTTGAG+GGG | - | chr3_2:63514189-63514208 | None:intergenic | 45.0% | |
| ! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3_2:63514191-63514210 | None:intergenic | 45.0% |
| ! | GTGTCTAGGGTGGAGATTTA+AGG | + | chr3_2:63514549-63514568 | Msa0416590:intron | 45.0% |
| GTAACCGTTAGCATCACACT+CGG | - | chr3_2:63514651-63514670 | None:intergenic | 45.0% | |
| CTCTTAGGAGAATACGAGGA+AGG | - | chr3_2:63514775-63514794 | None:intergenic | 45.0% | |
| GCATCTCTTAGGAGAATACG+AGG | - | chr3_2:63514779-63514798 | None:intergenic | 45.0% | |
| TGTTACGAGGATACTACGGA+TGG | + | chr3_2:63515018-63515037 | Msa0416590:CDS | 45.0% | |
| GGAAAACTTGATGGAGGACT+TGG | - | chr3_2:63515061-63515080 | None:intergenic | 45.0% | |
| ! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3_2:63515067-63515086 | None:intergenic | 45.0% |
| ! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3_2:63515064-63515083 | Msa0416590:CDS | 45.0% |
| GTTTATCTATGCGTAGTGGC+CGG | + | chr3_2:63515264-63515283 | Msa0416590:intron | 45.0% | |
| TGCACAAATGGGGTTACAGA+CGG | + | chr3_2:63515738-63515757 | Msa0416590:intron | 45.0% | |
| ! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3_2:63516359-63516378 | None:intergenic | 45.0% |
| ! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3_2:63516360-63516379 | None:intergenic | 45.0% |
| !!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3_2:63516697-63516716 | None:intergenic | 45.0% |
| ! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3_2:63516697-63516716 | Msa0416590:CDS | 45.0% |
| !!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3_2:63516702-63516721 | None:intergenic | 45.0% |
| ! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3_2:63517204-63517223 | None:intergenic | 45.0% |
| ! | CACCACAATTTTGCTTCCCT+CGG | - | chr3_2:63517547-63517566 | None:intergenic | 45.0% |
| GAACATTGAATCCTTCCGAG+TGG | + | chr3_2:63517685-63517704 | Msa0416590:CDS | 45.0% | |
| CTCTCTGTGAAAAGTCCACT+CGG | - | chr3_2:63517703-63517722 | None:intergenic | 45.0% | |
| ! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3_2:63517709-63517728 | Msa0416590:CDS | 45.0% |
| GTTCAGTGGGATTAGGATGT+TGG | + | chr3_2:63517723-63517742 | Msa0416590:exon | 45.0% | |
| !!! | TATGATATTTTTTTTTTTTT+TGG | - | chr3_2:63516293-63516312 | None:intergenic | 5.0% |
| CAAACCGCTTCCTAAGCTTG+TGG | - | chr3_2:63513661-63513680 | None:intergenic | 50.0% | |
| CACAAGCTTAGGAAGCGGTT+TGG | + | chr3_2:63513659-63513678 | Msa0416590:five_prime_UTR | 50.0% | |
| GCTGTAACTGAGCTGAACGA+TGG | - | chr3_2:63513854-63513873 | None:intergenic | 50.0% | |
| CAGCTCAGTTACAGCCATAG+TGG | + | chr3_2:63513859-63513878 | Msa0416590:CDS | 50.0% | |
| GAAAGGAACCCCAACCACTA+TGG | - | chr3_2:63513876-63513895 | None:intergenic | 50.0% | |
| AGGTCCCCTCAAGCTACAAT+AGG | + | chr3_2:63514182-63514201 | Msa0416590:intron | 50.0% | |
| GCTACAATAGGCACTTCCCA+AGG | + | chr3_2:63514194-63514213 | Msa0416590:intron | 50.0% | |
| TTGGAGTGATAGGAAGACCG+AGG | + | chr3_2:63514573-63514592 | Msa0416590:intron | 50.0% | |
| TGGAGTGATAGGAAGACCGA+GGG | + | chr3_2:63514574-63514593 | Msa0416590:intron | 50.0% | |
| CACTCCGAGTGTGATGCTAA+CGG | + | chr3_2:63514644-63514663 | Msa0416590:intron | 50.0% | |
| GCTCATGGTGATTGCAGAGT+AGG | + | chr3_2:63514797-63514816 | Msa0416590:intron | 50.0% | |
| TACGCTACCGGAGGAAGATT+AGG | - | chr3_2:63515314-63515333 | None:intergenic | 50.0% | |
| AACAGGTGCCAATGTAGAGC+TGG | - | chr3_2:63515408-63515427 | None:intergenic | 50.0% | |
| GTAGCAGCATCCTGTGAAGT+GGG | - | chr3_2:63515854-63515873 | None:intergenic | 50.0% | |
| TGTAGCAGCATCCTGTGAAG+TGG | - | chr3_2:63515855-63515874 | None:intergenic | 50.0% | |
| ! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3_2:63516651-63516670 | None:intergenic | 50.0% |
| ! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3_2:63516707-63516726 | Msa0416590:CDS | 50.0% |
| ! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3_2:63517198-63517217 | None:intergenic | 50.0% |
| TGGTATCCATTTAGCAGCCG+AGG | + | chr3_2:63517527-63517546 | Msa0416590:CDS | 50.0% | |
| GGTATCCATTTAGCAGCCGA+GGG | + | chr3_2:63517528-63517547 | Msa0416590:CDS | 50.0% | |
| AGCCGAGGGAAGCAAAATTG+TGG | + | chr3_2:63517542-63517561 | Msa0416590:CDS | 50.0% | |
| ATAGACTTCCAGTGGAGGCA+TGG | - | chr3_2:63517609-63517628 | None:intergenic | 50.0% | |
| TGTGCATAGACTTCCAGTGG+AGG | - | chr3_2:63517614-63517633 | None:intergenic | 50.0% | |
| CAGTGTGCATAGACTTCCAG+TGG | - | chr3_2:63517617-63517636 | None:intergenic | 50.0% | |
| CTGTGAAAAGTCCACTCGGA+AGG | - | chr3_2:63517699-63517718 | None:intergenic | 50.0% | |
| !! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3_2:63517701-63517720 | Msa0416590:CDS | 50.0% |
| CAGAGAGGTTCAGTGGGATT+AGG | + | chr3_2:63517716-63517735 | Msa0416590:CDS | 50.0% | |
| CGTTGACCCTCCACAAGCTT+AGG | + | chr3_2:63513648-63513667 | Msa0416590:five_prime_UTR | 55.0% | |
| CCGCTTCCTAAGCTTGTGGA+GGG | - | chr3_2:63513657-63513676 | None:intergenic | 55.0% | |
| CCCTCCACAAGCTTAGGAAG+CGG | + | chr3_2:63513654-63513673 | Msa0416590:five_prime_UTR | 55.0% | |
| ACCGCTTCCTAAGCTTGTGG+AGG | - | chr3_2:63513658-63513677 | None:intergenic | 55.0% | |
| !! | GGTTGGTTTGGTGTCTAGGG+TGG | + | chr3_2:63514539-63514558 | Msa0416590:intron | 55.0% |
| TCCATGGGTCCTCACTCATC+TGG | + | chr3_2:63515914-63515933 | Msa0416590:CDS | 55.0% | |
| ACCAGATGAGTGAGGACCCA+TGG | - | chr3_2:63515918-63515937 | None:intergenic | 55.0% | |
| GGTCCTCACTCATCTGGTCT+AGG | + | chr3_2:63515920-63515939 | Msa0416590:CDS | 55.0% | |
| TGCTTCCCTCGGCTGCTAAA+TGG | - | chr3_2:63517536-63517555 | None:intergenic | 55.0% | |
| ATTGGAAGCCATGCCTCCAC+TGG | + | chr3_2:63517598-63517617 | Msa0416590:CDS | 55.0% | |
| TGGAGTGGGGATCGAACCCT+CGG | - | chr3_2:63514593-63514612 | None:intergenic | 60.0% | |
| GGGCCTAGACCAGATGAGTG+AGG | - | chr3_2:63515926-63515945 | None:intergenic | 60.0% | |
| ! | CGGTTTGGCGCTGCCTGCTT+TGG | + | chr3_2:63513674-63513693 | Msa0416590:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63513514 | 63518019 | 63513514 | ID=Msa0416590;Name=Msa0416590 |
| chr3_2 | mRNA | 63513514 | 63518019 | 63513514 | ID=Msa0416590-mRNA-1;Parent=Msa0416590;Name=Msa0416590-mRNA-1;_AED=0.19;_eAED=0.19;_QI=294|0.8|0.83|1|1|1|6|282|264 |
| chr3_2 | exon | 63513514 | 63513918 | 63513514 | ID=Msa0416590-mRNA-1:exon:13872;Parent=Msa0416590-mRNA-1 |
| chr3_2 | exon | 63515008 | 63515085 | 63515008 | ID=Msa0416590-mRNA-1:exon:13873;Parent=Msa0416590-mRNA-1 |
| chr3_2 | exon | 63515863 | 63516003 | 63515863 | ID=Msa0416590-mRNA-1:exon:13874;Parent=Msa0416590-mRNA-1 |
| chr3_2 | exon | 63516628 | 63516728 | 63516628 | ID=Msa0416590-mRNA-1:exon:13875;Parent=Msa0416590-mRNA-1 |
| chr3_2 | exon | 63516834 | 63516983 | 63516834 | ID=Msa0416590-mRNA-1:exon:13876;Parent=Msa0416590-mRNA-1 |
| chr3_2 | exon | 63517524 | 63518019 | 63517524 | ID=Msa0416590-mRNA-1:exon:13877;Parent=Msa0416590-mRNA-1 |
| chr3_2 | five_prime_UTR | 63513514 | 63513807 | 63513514 | ID=Msa0416590-mRNA-1:five_prime_utr;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63513808 | 63513918 | 63513808 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63515008 | 63515085 | 63515008 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63515863 | 63516003 | 63515863 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63516628 | 63516728 | 63516628 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63516834 | 63516983 | 63516834 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | CDS | 63517524 | 63517737 | 63517524 | ID=Msa0416590-mRNA-1:cds;Parent=Msa0416590-mRNA-1 |
| chr3_2 | three_prime_UTR | 63517738 | 63518019 | 63517738 | ID=Msa0416590-mRNA-1:three_prime_utr;Parent=Msa0416590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
