AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509210 MtrunA17_Chr3g0114101 98.848 434 4 1 1 434 1 433 0.0 895
Msa0509210 MtrunA17_Chr5g0437601 75.115 434 98 4 1 434 4 427 0.0 670
Msa0509210 MtrunA17_Chr4g0005491 51.412 354 166 3 85 433 57 409 2.01e-135 395
Msa0509210 MtrunA17_Chr7g0243301 51.003 349 165 3 89 432 63 410 1.16e-130 383
Msa0509210 MtrunA17_Chr4g0005481 49.608 383 188 3 48 428 64 443 4.24e-130 382
Msa0509210 MtrunA17_Chr3g0113671 51.429 350 162 4 87 431 103 449 8.97e-129 379
Msa0509210 MtrunA17_Chr8g0360521 43.972 423 223 5 11 432 1 410 3.08e-125 369
Msa0509210 MtrunA17_Chr4g0006991 41.452 427 248 2 6 431 2 427 5.07e-123 364
Msa0509210 MtrunA17_Chr5g0437291 48.159 353 172 5 88 432 163 512 4.27e-117 352
Msa0509210 MtrunA17_Chr7g0242701 41.191 403 236 1 29 431 26 427 1.66e-114 342
Msa0509210 MtrunA17_Chr3g0105301 39.437 355 191 7 87 433 40 378 1.06e-83 261
Msa0509210 MtrunA17_Chr1g0175671 38.028 355 196 8 89 432 169 510 2.77e-80 257
Msa0509210 MtrunA17_Chr5g0430371 36.997 373 203 9 77 433 45 401 8.28e-79 249
Msa0509210 MtrunA17_Chr1g0210771 36.827 353 201 8 81 431 50 382 1.20e-77 246
Msa0509210 MtrunA17_Chr4g0041011 35.156 384 222 9 49 431 6 363 2.53e-77 244
Msa0509210 MtrunA17_Chr7g0258851 37.535 357 195 9 89 432 247 588 2.09e-76 249
Msa0509210 MtrunA17_Chr2g0325481 35.714 350 200 8 83 432 43 367 5.31e-75 238
Msa0509210 MtrunA17_Chr3g0085071 37.607 351 191 9 83 431 39 363 1.55e-73 234
Msa0509210 MtrunA17_Chr1g0171171 35.756 344 202 7 88 431 51 375 2.07e-73 234
Msa0509210 MtrunA17_Chr5g0413271 34.473 351 210 8 87 432 142 477 4.31e-73 237
Msa0509210 MtrunA17_Chr3g0085081 36.963 349 186 9 88 431 29 348 7.53e-73 232
Msa0509210 MtrunA17_Chr2g0287901 37.709 358 198 10 84 429 91 435 8.23e-73 236
Msa0509210 MtrunA17_Chr3g0097891 37.026 343 192 7 90 431 31 350 8.54e-73 232
Msa0509210 MtrunA17_Chr4g0071391 36.080 352 205 8 88 431 107 446 2.33e-72 234
Msa0509210 MtrunA17_Chr2g0283581 36.735 343 190 9 90 431 42 358 2.45e-72 231
Msa0509210 MtrunA17_Chr5g0413851 37.283 346 191 8 87 431 39 359 6.04e-72 230
Msa0509210 MtrunA17_Chr4g0045941 34.770 348 203 8 85 432 28 351 8.89e-72 229
Msa0509210 MtrunA17_Chr3g0091031 36.441 354 191 9 83 431 24 348 2.15e-71 229
Msa0509210 MtrunA17_Chr4g0068111 33.333 387 233 9 56 432 83 454 1.33e-70 230
Msa0509210 MtrunA17_Chr7g0269991 36.856 388 200 11 64 431 105 467 1.02e-69 228
Msa0509210 MtrunA17_Chr2g0314801 34.916 358 202 8 76 428 19 350 2.34e-69 223
Msa0509210 MtrunA17_Chr4g0045951 34.770 348 203 7 85 432 40 363 2.70e-69 224
Msa0509210 MtrunA17_Chr1g0213281 35.977 353 207 9 90 433 175 517 2.86e-69 228
Msa0509210 MtrunA17_Chr7g0259711 34.262 359 214 10 85 432 86 433 2.79e-68 224
Msa0509210 MtrunA17_Chr2g0314791 36.056 355 184 11 87 432 26 346 4.83e-67 217
Msa0509210 MtrunA17_Chr8g0368461 31.967 366 214 10 89 432 177 529 3.12e-61 207
Msa0509210 MtrunA17_Chr8g0384151 31.373 357 214 9 84 432 84 417 4.37e-56 191
Msa0509210 MtrunA17_Chr3g0126021 29.101 378 235 9 67 432 104 460 1.53e-52 182
Msa0509210 MtrunA17_Chr1g0209921 36.555 238 133 6 88 320 42 266 1.31e-45 159
Msa0509210 MtrunA17_Chr8g0347321 29.000 400 248 15 51 431 57 439 4.99e-42 154
Msa0509210 MtrunA17_Chr6g0456691 28.941 387 243 12 61 431 49 419 1.07e-40 150
Msa0509210 MtrunA17_Chr6g0456681 30.028 363 219 9 88 431 62 408 1.30e-40 149
Msa0509210 MtrunA17_Chr8g0391481 29.333 375 227 12 75 428 12 369 9.41e-38 141
Msa0509210 MtrunA17_Chr6g0476041 28.212 358 229 14 88 428 165 511 1.13e-37 143
Msa0509210 MtrunA17_Chr2g0283851 30.387 362 206 16 91 427 56 396 1.39e-37 141
Msa0509210 MtrunA17_Chr1g0188191 26.992 389 248 15 64 428 202 578 2.45e-37 143
Msa0509210 MtrunA17_Chr8g0384421 30.789 380 212 17 77 431 119 472 3.95e-37 141
Msa0509210 MtrunA17_Chr6g0451321 26.667 465 271 18 8 431 22 457 9.72e-37 140
Msa0509210 MtrunA17_Chr8g0387921 26.944 360 231 12 86 427 70 415 1.45e-35 135
Msa0509210 MtrunA17_Chr5g0414061 27.660 376 219 15 81 428 85 435 1.74e-35 136
Msa0509210 MtrunA17_Chr5g0414091 29.315 365 219 12 85 427 80 427 4.85e-35 134
Msa0509210 MtrunA17_Chr7g0226991 28.535 389 227 13 66 428 36 399 5.26e-35 134
Msa0509210 MtrunA17_Chr1g0178081 33.852 257 135 7 20 267 10 240 7.54e-34 130
Msa0509210 MtrunA17_Chr1g0178081 35.252 139 79 4 297 432 212 342 7.03e-16 78.6
Msa0509210 MtrunA17_Chr3g0140371 28.649 370 221 14 81 428 9 357 1.08e-33 129
Msa0509210 MtrunA17_Chr5g0414051 26.471 374 217 14 86 428 71 417 3.55e-32 127
Msa0509210 MtrunA17_Chr4g0070341 28.571 392 206 17 76 431 118 471 1.27e-31 125
Msa0509210 MtrunA17_Chr5g0414041 28.378 370 228 15 80 428 77 430 3.83e-31 124
Msa0509210 MtrunA17_Chr6g0455901 25.909 440 268 15 15 431 12 416 2.01e-30 121
Msa0509210 MtrunA17_Chr7g0221271 34.667 150 97 1 68 217 57 205 4.81e-26 104
Msa0509210 MtrunA17_Chr4g0049421 26.536 358 226 12 90 427 48 388 5.04e-26 108
Msa0509210 MtrunA17_Chr7g0221291 45.263 95 51 1 88 182 77 170 3.54e-24 98.6
Msa0509210 MtrunA17_Chr2g0287931 38.168 131 67 5 150 271 1 126 1.16e-16 76.3
Msa0509210 MtrunA17_Chr3g0085101 39.640 111 63 3 283 392 1 108 2.47e-15 72.0
Msa0509210 MtrunA17_Chr7g0221281 24.793 242 155 11 204 431 8 236 7.14e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509210 AT2G40320.1 70.644 419 112 4 15 433 17 424 0.0 619
Msa0509210 AT3G11030.1 62.252 453 141 5 5 434 6 451 0.0 582
Msa0509210 AT5G01620.2 52.754 345 159 2 85 428 105 446 2.67e-132 389
Msa0509210 AT5G01620.1 52.754 345 159 2 85 428 105 446 2.67e-132 389
Msa0509210 AT5G01620.3 52.754 345 159 2 85 428 113 454 5.29e-132 388
Msa0509210 AT5G01360.2 48.127 347 179 1 86 431 32 378 5.83e-126 370
Msa0509210 AT5G01360.1 45.646 379 203 2 54 431 58 434 1.33e-125 371
Msa0509210 AT3G55990.1 50.000 370 172 5 73 432 118 484 5.26e-125 371
Msa0509210 AT1G73140.1 45.739 352 186 2 82 432 59 406 1.42e-122 362
Msa0509210 AT2G40150.1 50.000 354 163 3 89 431 70 420 7.38e-121 358
Msa0509210 AT2G38320.1 43.455 382 206 4 60 432 25 405 8.06e-119 353
Msa0509210 AT2G40160.1 42.663 368 201 7 74 433 60 425 4.58e-107 323
Msa0509210 AT2G40160.2 42.424 363 193 7 79 427 59 419 1.64e-106 322
Msa0509210 AT2G38320.2 46.130 323 168 3 115 432 1 322 8.36e-106 317
Msa0509210 AT3G12060.1 38.889 360 194 9 85 432 191 536 1.49e-82 264
Msa0509210 AT5G06700.1 37.500 376 213 9 67 432 232 595 8.14e-82 264
Msa0509210 AT1G78710.1 37.047 359 199 9 76 432 24 357 6.14e-81 254
Msa0509210 AT5G20590.1 36.538 364 214 6 76 432 127 480 1.13e-77 249
Msa0509210 AT2G30900.1 36.000 350 199 10 87 433 40 367 1.53e-75 240
Msa0509210 AT2G42570.1 34.865 370 216 8 63 432 21 365 9.61e-75 238
Msa0509210 AT3G62390.1 37.500 376 200 12 73 433 118 473 4.29e-74 240
Msa0509210 AT2G40160.3 42.063 252 136 4 79 320 59 310 6.46e-74 234
Msa0509210 AT1G60790.1 34.726 383 224 10 61 432 166 533 1.04e-73 241
Msa0509210 AT5G58600.1 36.261 353 200 8 90 433 66 402 6.78e-73 234
Msa0509210 AT5G19160.1 38.630 365 190 11 84 429 93 442 1.21e-72 236
Msa0509210 AT3G54260.1 36.950 341 191 8 90 427 51 370 1.34e-72 233
Msa0509210 AT2G30010.1 36.528 386 218 9 62 433 26 398 2.98e-72 233
Msa0509210 AT1G29050.1 34.857 350 204 6 82 431 53 378 4.98e-72 231
Msa0509210 AT3G14850.2 36.522 345 196 7 85 428 29 351 5.09e-72 231
Msa0509210 AT2G30010.2 36.528 386 218 9 62 433 69 441 7.45e-72 233
Msa0509210 AT5G49340.1 34.521 365 221 8 77 432 87 442 1.17e-71 233
Msa0509210 AT3G06080.2 33.488 430 254 12 15 429 31 443 5.78e-71 231
Msa0509210 AT2G34070.1 32.391 389 229 9 43 431 29 383 3.92e-69 224
Msa0509210 AT2G31110.2 35.756 344 195 9 89 431 44 362 1.18e-68 222
Msa0509210 AT5G06230.2 36.413 368 190 11 88 432 19 365 4.12e-67 219
Msa0509210 AT5G06230.1 36.413 368 190 11 88 432 60 406 1.35e-66 218
Msa0509210 AT1G48880.1 33.521 355 201 10 87 432 112 440 1.83e-59 201
Msa0509210 AT3G11570.1 35.417 336 194 8 107 432 98 420 5.60e-59 199
Msa0509210 AT1G78710.2 31.755 359 165 10 76 432 17 297 1.25e-57 192
Msa0509210 AT5G19160.2 39.841 251 136 6 84 324 93 338 3.92e-53 181
Msa0509210 AT2G30900.2 36.555 238 140 6 87 322 40 268 6.64e-50 171
Msa0509210 AT3G06080.1 31.532 333 206 8 5 326 23 344 1.40e-49 172
Msa0509210 AT3G62390.2 36.742 264 149 6 73 324 118 375 1.77e-49 174
Msa0509210 AT5G20590.2 36.508 252 151 3 76 320 127 376 2.79e-49 172
Msa0509210 AT5G58600.2 35.565 239 135 6 90 322 66 291 5.51e-46 161
Msa0509210 AT2G31110.3 34.649 228 138 5 89 315 44 261 5.00e-44 155
Msa0509210 AT1G70230.1 30.387 362 213 13 85 431 74 411 1.08e-43 158
Msa0509210 AT5G06230.3 35.827 254 132 7 88 320 60 303 1.12e-43 155
Msa0509210 AT2G34070.2 31.734 271 163 5 161 431 1 249 3.99e-42 149
Msa0509210 AT3G14850.1 33.829 269 156 6 161 428 1 248 5.83e-42 149
Msa0509210 AT5G15890.1 30.362 359 214 10 85 428 182 519 1.19e-39 149
Msa0509210 AT5G51640.1 27.000 400 245 16 57 428 105 485 2.47e-39 148
Msa0509210 AT1G01430.1 30.084 359 218 11 89 427 98 443 3.19e-39 147
Msa0509210 AT5G64020.1 29.189 370 216 17 90 431 57 408 5.51e-38 142
Msa0509210 AT5G15900.1 28.689 366 214 12 90 431 67 409 2.02e-37 141
Msa0509210 AT5G15900.2 28.689 366 214 12 90 431 86 428 2.42e-37 141
Msa0509210 AT3G28150.1 28.611 360 222 12 87 429 67 408 5.21e-37 140
Msa0509210 AT4G01080.1 29.296 355 217 14 89 427 90 426 6.32e-37 140
Msa0509210 AT5G64470.3 30.141 355 212 14 90 427 55 390 2.96e-36 137
Msa0509210 AT2G37720.1 29.058 382 197 17 86 431 139 482 7.09e-36 138
Msa0509210 AT3G02440.1 27.344 384 245 10 65 431 102 468 1.46e-35 137
Msa0509210 AT3G02440.2 27.344 384 245 10 65 431 110 476 1.78e-35 137
Msa0509210 AT4G25360.1 26.667 375 227 14 82 428 167 521 2.65e-35 137
Msa0509210 AT4G25360.2 26.667 375 227 14 82 428 167 521 2.65e-35 137
Msa0509210 AT4G23790.1 25.850 441 267 20 24 431 14 427 2.76e-34 133
Msa0509210 AT5G64470.2 29.917 361 211 15 90 427 55 396 7.35e-34 131
Msa0509210 AT2G14530.1 27.072 362 227 10 90 431 62 406 1.17e-32 128
Msa0509210 AT2G31110.1 33.333 231 129 8 202 431 8 214 3.49e-32 122
Msa0509210 AT5G20680.6 26.455 378 208 16 88 431 116 457 4.54e-32 127
Msa0509210 AT5G20680.2 26.455 378 208 16 88 431 192 533 1.06e-31 127
Msa0509210 AT5G20680.4 26.455 378 208 16 88 431 210 551 1.43e-31 127
Msa0509210 AT5G20680.1 26.455 378 208 16 88 431 210 551 1.43e-31 127
Msa0509210 AT5G20680.3 26.455 378 208 16 88 431 210 551 1.43e-31 127
Msa0509210 AT5G20680.5 26.455 378 208 16 88 431 210 551 1.43e-31 127
Msa0509210 AT4G11090.1 23.059 438 280 18 19 428 14 422 5.74e-30 120
Msa0509210 AT5G64470.4 28.676 272 170 11 90 347 55 316 1.28e-20 92.4
Msa0509210 AT5G64470.1 28.731 268 167 11 90 343 55 312 6.27e-20 90.5

Find 141 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAAATTGAACAGATTTCT+TGG 0.205060 3_4:+57543961 Msa0509210:three_prime_UTR
TTGCTTGAAGATTTGTAAAT+TGG 0.221284 3_4:+57543992 Msa0509210:three_prime_UTR
TCAATAAGCACGGTCGTTAT+TGG 0.224932 3_4:+57542758 Msa0509210:CDS
ATGTTAGCACCATTTGAATT+TGG 0.236044 3_4:-57544127 None:intergenic
TACAGCGTGGGTTTCAGTTT+TGG 0.238950 3_4:-57539176 None:intergenic
AGTAATAGTAATTAGTGTTT+TGG 0.247005 3_4:+57538984 Msa0509210:five_prime_UTR
ATGCTACAATTGAGTTCTAT+TGG 0.252458 3_4:+57542656 Msa0509210:CDS
AAAAGCATAATGCAAGTAAT+TGG 0.274783 3_4:+57543705 Msa0509210:CDS
ATCAAAGGTTTCCATAGATT+TGG 0.274989 3_4:-57542008 None:intergenic
CAATTGAAGAACCCTCATAT+TGG 0.278107 3_4:+57543667 Msa0509210:CDS
TAGATGTATGTGCGTCTTTA+CGG 0.283956 3_4:-57543791 None:intergenic
ACCTATCTTTGGTGGGTAAC+TGG 0.289892 3_4:+57542808 Msa0509210:CDS
TTCCATAGATTTGGCATGTT+GGG 0.300255 3_4:-57541999 None:intergenic
CGTTCAAGAGGTGGAGAAAA+AGG 0.300949 3_4:+57539231 Msa0509210:CDS
CCAAGAAATCTGTTCAATTT+CGG 0.306267 3_4:-57543961 None:intergenic
AATTGAAGAACCCTCATATT+GGG 0.319038 3_4:+57543668 Msa0509210:CDS
TGGTTAGAAAATGAGCTATA+GGG 0.321477 3_4:+57544053 Msa0509210:three_prime_UTR
TTGGAAAGGCGCAGACATTT+TGG 0.333962 3_4:+57542777 Msa0509210:CDS
TGGTCTTCAACACCTATCTT+TGG 0.335969 3_4:+57542797 Msa0509210:CDS
GTCAACTGTGGTTGTATATA+CGG 0.338046 3_4:-57539352 None:intergenic
TCCCCAACATGCCAAATCTA+TGG 0.346727 3_4:+57541997 Msa0509210:CDS
GGATAAGAGGGTGAAGAGAT+AGG 0.350140 3_4:-57539074 None:intergenic
CACTCAGATTCTTCATATAA+TGG 0.353264 3_4:-57539328 None:intergenic
TACCTGGACTTCAAGATACT+TGG 0.367210 3_4:+57543895 Msa0509210:CDS
CAATATGAGGGTTCTTCAAT+TGG 0.367795 3_4:-57543666 None:intergenic
GTGAACTTAAATCAGTCTCT+TGG 0.368146 3_4:+57544238 Msa0509210:three_prime_UTR
AGTGATGTTGAGAAATGTTA+TGG 0.369289 3_4:-57543754 None:intergenic
ATAGAGTGGGGAGGGGAGCC+AGG 0.374308 3_4:+57543618 Msa0509210:CDS
CCTATGGATGACAGCATTAT+CGG 0.375681 3_4:-57542704 None:intergenic
CGTGAGGCTGCCACCGCAAC+CGG 0.379489 3_4:-57539411 None:intergenic
ATTTGGGCGATATTGAGTTT+TGG 0.379556 3_4:+57544423 Msa0509210:three_prime_UTR
TTGTTGGGGACTCCCTCAAT+CGG 0.391697 3_4:+57541933 Msa0509210:CDS
GAAGAAGACTCTAGTCTTGT+TGG 0.392686 3_4:-57543061 None:intergenic
GGAAGAGGATGATGTTTGTT+GGG 0.394554 3_4:+57541918 Msa0509210:CDS
TTGGTTAGAAAATGAGCTAT+AGG 0.396510 3_4:+57544052 Msa0509210:three_prime_UTR
TGCTACAATTGAGTTCTATT+GGG 0.397733 3_4:+57542657 Msa0509210:CDS
CTATGAAAAGTATGCTTAGA+TGG 0.410597 3_4:+57543019 Msa0509210:CDS
GTTCTGAGAAGAAGAGAAGA+AGG 0.410800 3_4:-57539034 None:intergenic
TGTTGGGGACTCCCTCAATC+GGG 0.418979 3_4:+57541934 Msa0509210:CDS
CACCTCTTGAACGGTGTTGT+TGG 0.423545 3_4:-57539221 None:intergenic
GCTAGTTGCTCTGGAGTCAA+TGG 0.423636 3_4:-57543834 None:intergenic
TCATTGTAGCAGTTCCCTCC+TGG 0.423889 3_4:-57543636 None:intergenic
GAAACATAGTGATACAAGTT+AGG 0.434013 3_4:+57544267 Msa0509210:three_prime_UTR
TGAACTTAAATCAGTCTCTT+GGG 0.434928 3_4:+57544239 Msa0509210:three_prime_UTR
GCAGGGTTAGCTAGTTGCTC+TGG 0.435976 3_4:-57543843 None:intergenic
TGTATACACTGGTGTTTACC+TGG 0.440271 3_4:+57543879 Msa0509210:CDS
TGAAGAGGATGATGGATAAG+AGG 0.445125 3_4:-57539087 None:intergenic
TCAATTTCGGTGTTGTTTCA+AGG 0.447408 3_4:-57543948 None:intergenic
TGAATCAGATCCCCAATATG+AGG 0.448382 3_4:-57543679 None:intergenic
CAATTCTATCAGTTACCCTA+TGG 0.456943 3_4:-57542720 None:intergenic
AACCGGCGGTACTCTTTATC+CGG 0.462447 3_4:-57539394 None:intergenic
GGGAAGAGGATGATGTTTGT+TGG 0.465024 3_4:+57541917 Msa0509210:CDS
ACCAGCATGTCGCCTTCTCA+TGG 0.465345 3_4:+57543084 Msa0509210:CDS
AAGAAGACTCTAGTCTTGTT+GGG 0.468369 3_4:-57543060 None:intergenic
GCAGGAGTATAGAGTGGGGA+GGG 0.469570 3_4:+57543610 Msa0509210:intron
GTTCAGTGGAAGGTGGGTAA+AGG 0.469635 3_4:+57539291 Msa0509210:CDS
TTAAGAATGCCAAATTCAAA+TGG 0.470649 3_4:+57544118 Msa0509210:three_prime_UTR
CCGATAATGCTGTCATCCAT+AGG 0.473397 3_4:+57542704 Msa0509210:CDS
ATGTGCGTCTTTACGGTAGT+TGG 0.473437 3_4:-57543784 None:intergenic
GGGTGGAGTTGTTGGAGATG+TGG 0.476927 3_4:-57539154 None:intergenic
TCTTCAACACCTATCTTTGG+TGG 0.478179 3_4:+57542800 Msa0509210:CDS
AACTGATAGAATTGTAAGAA+AGG 0.479190 3_4:+57542729 Msa0509210:CDS
AAAGAGTGTGATTTGTTCAG+TGG 0.484270 3_4:+57539277 Msa0509210:CDS
AAAACTCAATATCGCCCAAA+TGG 0.486964 3_4:-57544421 None:intergenic
GCCAGTTACCCACCAAAGAT+AGG 0.490344 3_4:-57542809 None:intergenic
TTCTGAGAAGAAGAGAAGAA+GGG 0.490474 3_4:-57539033 None:intergenic
GAGTGGGGAGGGGAGCCAGG+AGG 0.492528 3_4:+57543621 Msa0509210:CDS
GACATACTGACCCCGATTGA+GGG 0.496519 3_4:-57541945 None:intergenic
GAGTTTGATTCAAGAAGAAA+AGG 0.496578 3_4:-57542682 None:intergenic
TGAATTTGGCATTCTTAAAG+TGG 0.497484 3_4:-57544113 None:intergenic
GGTTAGAAAATGAGCTATAG+GGG 0.501876 3_4:+57544054 Msa0509210:three_prime_UTR
AACATACAATATCTTCATGT+TGG 0.508341 3_4:-57542833 None:intergenic
GTGATGTTGAGAAATGTTAT+GGG 0.509971 3_4:-57543753 None:intergenic
AGTGGGGAGGGGAGCCAGGA+GGG 0.515159 3_4:+57543622 Msa0509210:CDS
TCCATAGATTTGGCATGTTG+GGG 0.516832 3_4:-57541998 None:intergenic
TTCCAAGTATCTTGAAGTCC+AGG 0.517028 3_4:-57543897 None:intergenic
TTGAATGAGTTTGCCATGCA+TGG 0.524798 3_4:-57539010 None:intergenic
GGAAGATGAAGAGGAAGTCA+TGG 0.527647 3_4:-57539129 None:intergenic
ATAAAGAGTACCGCCGGTTG+CGG 0.529348 3_4:+57539398 Msa0509210:CDS
ATACAATCAGAGTAGCTAGC+AGG 0.529439 3_4:-57543861 None:intergenic
TTTCCATAGATTTGGCATGT+TGG 0.529665 3_4:-57542000 None:intergenic
TAGAAACACTTCGTGGGAAG+AGG 0.532534 3_4:+57541903 Msa0509210:CDS
ACTGATAGAATTGTAAGAAA+GGG 0.534005 3_4:+57542730 Msa0509210:CDS
CGGTTGCGGTGGCAGCCTCA+CGG 0.534923 3_4:+57539412 Msa0509210:CDS
GTGATTTGTTCAGTGGAAGG+TGG 0.538218 3_4:+57539284 Msa0509210:CDS
GATGTGGACGGAAGATGAAG+AGG 0.540854 3_4:-57539138 None:intergenic
AGACATACTGACCCCGATTG+AGG 0.547149 3_4:-57541946 None:intergenic
GTTTCAAGGATAAAACAACT+TGG 0.548451 3_4:-57543934 None:intergenic
GTCATGGGTGTTGAGGATGA+TGG 0.549061 3_4:-57539113 None:intergenic
CATGTTGGGGAATGAGATGA+TGG 0.552042 3_4:-57541985 None:intergenic
CGATAATGCTGTCATCCATA+GGG 0.552611 3_4:+57542705 Msa0509210:CDS
GGCGGTACTCTTTATCCGGC+CGG 0.553038 3_4:-57539390 None:intergenic
GGGTAAAGGATGAGTTAACT+AGG 0.555433 3_4:+57539305 Msa0509210:CDS
TCCATGAGAAGGCGACATGC+TGG 0.560559 3_4:-57543085 None:intergenic
GAAGAGGATGATGGATAAGA+GGG 0.563005 3_4:-57539086 None:intergenic
TGATTTGTTCAGTGGAAGGT+GGG 0.568942 3_4:+57539285 Msa0509210:CDS
TGACTTGTCAAGAACATGGC+CGG 0.570301 3_4:+57539371 Msa0509210:CDS
GGCCGGATAAAGAGTACCGC+CGG 0.570651 3_4:+57539392 Msa0509210:CDS
GAAGACAGTGAGAGAATCAA+AGG 0.572213 3_4:-57542023 None:intergenic
GGCAGGAGTATAGAGTGGGG+AGG 0.573799 3_4:+57543609 Msa0509210:intron
TTGTCAAGAACATGGCCGGC+CGG 0.576259 3_4:+57539375 Msa0509210:CDS
AAGAGTACCGCCGGTTGCGG+TGG 0.579098 3_4:+57539401 Msa0509210:CDS
CTTCAACACCTATCTTTGGT+GGG 0.579952 3_4:+57542801 Msa0509210:CDS
GGAGTTGTTGGAGATGTGGA+CGG 0.584005 3_4:-57539150 None:intergenic
GATGGCGGTGAAGAGGATGA+TGG 0.584689 3_4:-57539095 None:intergenic
TACAATCAGAGTAGCTAGCA+GGG 0.585561 3_4:-57543860 None:intergenic
TATACTCACTTTCCATGAGA+AGG 0.587719 3_4:-57543096 None:intergenic
TGAGGATGATGGCGGTGAAG+AGG 0.590325 3_4:-57539102 None:intergenic
AGAGGAAGTCATGGGTGTTG+AGG 0.594059 3_4:-57539120 None:intergenic
GTCCAACAACACCGTTCAAG+AGG 0.598897 3_4:+57539219 Msa0509210:CDS
GAAGAGGATGATGTTTGTTG+GGG 0.599533 3_4:+57541919 Msa0509210:CDS
CAACAACACCGTTCAAGAGG+TGG 0.599644 3_4:+57539222 Msa0509210:CDS
TAATGCTAGAAACACTTCGT+GGG 0.605384 3_4:+57541897 Msa0509210:CDS
TTAATGCTAGAAACACTTCG+TGG 0.607752 3_4:+57541896 Msa0509210:CDS
CAGGAGTATAGAGTGGGGAG+GGG 0.610116 3_4:+57543611 Msa0509210:intron
AAGCACGGTCGTTATTGGAA+AGG 0.611241 3_4:+57542763 Msa0509210:CDS
GAAGATGAAGAGGAAGTCAT+GGG 0.615378 3_4:-57539128 None:intergenic
CAGTTGACTTGTCAAGAACA+TGG 0.615431 3_4:+57539367 Msa0509210:CDS
TATGAAAAGTATGCTTAGAT+GGG 0.615716 3_4:+57543020 Msa0509210:CDS
ATTGAAGAACCCTCATATTG+GGG 0.618106 3_4:+57543669 Msa0509210:CDS
GTTGGGGACTCCCTCAATCG+GGG 0.618765 3_4:+57541935 Msa0509210:CDS
GAGGCTGCCACCGCAACCGG+CGG 0.622452 3_4:-57539408 None:intergenic
GAATCAGATCCCCAATATGA+GGG 0.624581 3_4:-57543678 None:intergenic
AACAGAGGAAGCCTATCGCA+TGG 0.627890 3_4:+57542996 Msa0509210:CDS
CGTTGAAAAGAGTACAGCGT+GGG 0.628789 3_4:-57539188 None:intergenic
AATTGGAAGATAAAGCATGT+GGG 0.631563 3_4:+57544009 Msa0509210:three_prime_UTR
GGGGAATGAGATGATGGAGA+AGG 0.634101 3_4:-57541979 None:intergenic
AGTGTGATTTGTTCAGTGGA+AGG 0.637166 3_4:+57539281 Msa0509210:CDS
AAATTGGAAGATAAAGCATG+TGG 0.637731 3_4:+57544008 Msa0509210:three_prime_UTR
TTTGGCAGGAGTATAGAGTG+GGG 0.639163 3_4:+57543606 Msa0509210:intron
GATTGTTGAGATGCAAACAG+AGG 0.642193 3_4:+57542981 Msa0509210:CDS
TAGATGGGTGAAAATGAACA+TGG 0.646778 3_4:+57543035 Msa0509210:CDS
TCTCACTGTCTTCACAGCCA+AGG 0.647375 3_4:+57542033 Msa0509210:CDS
AAGGGTTCAATCAATAAGCA+CGG 0.650432 3_4:+57542748 Msa0509210:CDS
GCTACTCTGATTGTATACAC+TGG 0.654776 3_4:+57543868 Msa0509210:CDS
TTGGGAAGATCGCAGCCGTG+AGG 0.692886 3_4:-57539427 None:intergenic
TGTTCTTGACAAGTCAACTG+TGG 0.713133 3_4:-57539364 None:intergenic
AAGAGATAGGAAGAAAGACG+AGG 0.721315 3_4:-57539061 None:intergenic
ATGGGTGTTGAGGATGATGG+CGG 0.751697 3_4:-57539110 None:intergenic
CCGTTGAAAAGAGTACAGCG+TGG 0.757204 3_4:-57539189 None:intergenic
ATGGTGCTAACATATGTACG+CGG 0.792749 3_4:+57544137 Msa0509210:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAAAAAATACAA+CGG + chr3_4:57540493-57540512 Msa0509210:intron 10.0%
!!! GTTTTGATATTTATTTTTTT+TGG - chr3_4:57541064-57541083 None:intergenic 10.0%
!!! ATTTTGTAATAGTAGTTTAA+TGG + chr3_4:57539672-57539691 Msa0509210:intron 15.0%
!!! ATAAATCTCGAATTTTTTAA+AGG - chr3_4:57539822-57539841 None:intergenic 15.0%
!!! TTGATAAATTTTGTTTTGTT+TGG - chr3_4:57539976-57539995 None:intergenic 15.0%
!!! TATTGTGCTATTATATTTTT+CGG - chr3_4:57541086-57541105 None:intergenic 15.0%
!! TCATATTGTTGTATTTAATT+AGG + chr3_4:57542627-57542646 Msa0509210:intron 15.0%
!! AAACAATTTATTGAATATAG+TGG - chr3_4:57542865-57542884 None:intergenic 15.0%
!!! TGTTTTATAATTGAAAAATC+TGG - chr3_4:57543228-57543247 None:intergenic 15.0%
!! CAAGAATTATTCTTAAATAT+TGG - chr3_4:57543300-57543319 None:intergenic 15.0%
!!! TTAAAATGTTTTATTGTTCT+CGG - chr3_4:57543438-57543457 None:intergenic 15.0%
!!! ATTAAAGTACTATGTTATTT+TGG + chr3_4:57543588-57543607 Msa0509210:intron 15.0%
!!! AGTAATAGTAATTAGTGTTT+TGG + chr3_4:57538984-57539003 Msa0509210:five_prime_UTR 20.0%
!!! GTAATAGTAATTAGTGTTTT+GGG + chr3_4:57538985-57539004 Msa0509210:five_prime_UTR 20.0%
!!! TAATAGTAATTAGTGTTTTG+GGG + chr3_4:57538986-57539005 Msa0509210:five_prime_UTR 20.0%
!!! TAGTACTATAGTTTTATACA+AGG + chr3_4:57539719-57539738 Msa0509210:intron 20.0%
!!! ATAGAAATGTTTACAAGTTT+TGG + chr3_4:57540013-57540032 Msa0509210:intron 20.0%
!!! ATTAATAATGCCACTAATTT+TGG + chr3_4:57540147-57540166 Msa0509210:intron 20.0%
!! TCAAAAAATAAGAATGAACT+GGG - chr3_4:57540297-57540316 None:intergenic 20.0%
!!! TCAAATATTTTTATCCTGTA+TGG + chr3_4:57540340-57540359 Msa0509210:intron 20.0%
!!! ACTAGAATAAAGACTTATTT+TGG - chr3_4:57540439-57540458 None:intergenic 20.0%
!! TACAATGAAGAATCATAAAT+TGG + chr3_4:57540896-57540915 Msa0509210:intron 20.0%
!!! ATAAATTGGAATTCTAGTTA+AGG + chr3_4:57540910-57540929 Msa0509210:intron 20.0%
!!! TGTAGTATCAATTTTCTTTA+TGG + chr3_4:57541450-57541469 Msa0509210:intron 20.0%
!!! AACTAACGTACAATTTTTTT+TGG - chr3_4:57541668-57541687 None:intergenic 20.0%
!!! TGCTAATTTTGTATTTTTGT+TGG + chr3_4:57541721-57541740 Msa0509210:intron 20.0%
!!! CTAGATATTTTGAAAACTAA+GGG + chr3_4:57542497-57542516 Msa0509210:intron 20.0%
!!! TAGATATTTTGAAAACTAAG+GGG + chr3_4:57542498-57542517 Msa0509210:intron 20.0%
!!! TTTTGTTTCATTTACCATTT+TGG - chr3_4:57542553-57542572 None:intergenic 20.0%
!! AAGAAAAAGAAAGAAAGAAA+AGG - chr3_4:57542600-57542619 None:intergenic 20.0%
!!! TTTATTGAATATAGTGGATT+AGG - chr3_4:57542859-57542878 None:intergenic 20.0%
!! ATTTGAGTAGACATTAATTA+GGG - chr3_4:57542925-57542944 None:intergenic 20.0%
!! AATTTGAGTAGACATTAATT+AGG - chr3_4:57542926-57542945 None:intergenic 20.0%
!! TATACTATAATTCACAAACT+CGG + chr3_4:57543115-57543134 Msa0509210:intron 20.0%
!! TAGAAAATTGTGATATTGTA+TGG - chr3_4:57543338-57543357 None:intergenic 20.0%
!!! TAAAATGTTTTATTGTTCTC+GGG - chr3_4:57543437-57543456 None:intergenic 20.0%
!! AAATTGTTGTAAACAAGATT+CGG - chr3_4:57543487-57543506 None:intergenic 20.0%
!!! TTCTTTTTTCTTTGTTAAGA+AGG + chr3_4:57544295-57544314 Msa0509210:three_prime_UTR 20.0%
!!! TCTTTTTTCTTTGTTAAGAA+GGG + chr3_4:57544296-57544315 Msa0509210:three_prime_UTR 20.0%
! GAAGTGAAAAAACATTCAAT+AGG + chr3_4:57539575-57539594 Msa0509210:intron 25.0%
! TTATACAAGGAGCAAAATAT+TGG + chr3_4:57539732-57539751 Msa0509210:intron 25.0%
! TAACAACATTTGATATGTGT+AGG + chr3_4:57539914-57539933 Msa0509210:intron 25.0%
!!! ATAAGCGACTTTGTTTTTTT+AGG + chr3_4:57540062-57540081 Msa0509210:intron 25.0%
! GTCAAAAAATAAGAATGAAC+TGG - chr3_4:57540298-57540317 None:intergenic 25.0%
! TAATGTAGATGTTTATGACT+TGG + chr3_4:57540458-57540477 Msa0509210:intron 25.0%
! AATGTAGATGTTTATGACTT+GGG + chr3_4:57540459-57540478 Msa0509210:intron 25.0%
!! AGAGTCAGAAATTTAGTTTA+GGG + chr3_4:57540546-57540565 Msa0509210:intron 25.0%
!! TAAGACTCTTCTTTCTTTTT+CGG + chr3_4:57540935-57540954 Msa0509210:intron 25.0%
!! CCTTAAACAACTAAGTTTTT+AGG - chr3_4:57540997-57541016 None:intergenic 25.0%
! CCTAAAAACTTAGTTGTTTA+AGG + chr3_4:57540994-57541013 Msa0509210:intron 25.0%
! TAGCCAATTCTTGTAATAAT+AGG + chr3_4:57541490-57541509 Msa0509210:intron 25.0%
! CTTCCTATTATTACAAGAAT+TGG - chr3_4:57541496-57541515 None:intergenic 25.0%
! CTTGTAATAATAGGAAGAAT+TGG + chr3_4:57541499-57541518 Msa0509210:intron 25.0%
!! TTTCTAGAAGTATAACTTCA+AGG - chr3_4:57541700-57541719 None:intergenic 25.0%
! GAAATTCAAAATCCTAATTC+AGG - chr3_4:57541795-57541814 None:intergenic 25.0%
!! AGGATTTTGAATTTCTTCAA+AGG + chr3_4:57541800-57541819 Msa0509210:intron 25.0%
! ATATATTGCACATAAGCTAT+GGG - chr3_4:57542076-57542095 None:intergenic 25.0%
! AATATATTGCACATAAGCTA+TGG - chr3_4:57542077-57542096 None:intergenic 25.0%
!!! TTTTGCTTTATTCACGATTT+TGG + chr3_4:57542119-57542138 Msa0509210:intron 25.0%
! AACCTCAAAATGTATAAATG+GGG - chr3_4:57542203-57542222 None:intergenic 25.0%
! CAACCTCAAAATGTATAAAT+GGG - chr3_4:57542204-57542223 None:intergenic 25.0%
! TCAACCTCAAAATGTATAAA+TGG - chr3_4:57542205-57542224 None:intergenic 25.0%
!!! AAAAACACGTAAATTTGTTG+TGG + chr3_4:57542349-57542368 Msa0509210:intron 25.0%
!!! GCTAGATATTTTGAAAACTA+AGG + chr3_4:57542496-57542515 Msa0509210:intron 25.0%
! AACTGATAGAATTGTAAGAA+AGG + chr3_4:57542729-57542748 Msa0509210:CDS 25.0%
! ACTGATAGAATTGTAAGAAA+GGG + chr3_4:57542730-57542749 Msa0509210:CDS 25.0%
! AACATACAATATCTTCATGT+TGG - chr3_4:57542836-57542855 None:intergenic 25.0%
! TTTGAGTAGACATTAATTAG+GGG - chr3_4:57542924-57542943 None:intergenic 25.0%
!! TAATGTCTACTCAAATTTTC+AGG + chr3_4:57542929-57542948 Msa0509210:intron 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG + chr3_4:57543020-57543039 Msa0509210:CDS 25.0%
!!! ATATTTTTAATGCGTGAAAG+CGG - chr3_4:57543163-57543182 None:intergenic 25.0%
!! CCGTTTTATCTTTAATCAAA+CGG - chr3_4:57543192-57543211 None:intergenic 25.0%
! CCGTTTGATTAAAGATAAAA+CGG + chr3_4:57543189-57543208 Msa0509210:intron 25.0%
!!! AGTTAAAATCTGCAGTTTTT+TGG + chr3_4:57543248-57543267 Msa0509210:intron 25.0%
!!! GTTAAAATCTGCAGTTTTTT+GGG + chr3_4:57543249-57543268 Msa0509210:intron 25.0%
!!! AAAATGTTTTATTGTTCTCG+GGG - chr3_4:57543436-57543455 None:intergenic 25.0%
! AATTGTTGTAAACAAGATTC+GGG - chr3_4:57543486-57543505 None:intergenic 25.0%
! AACAATAAGTATGATGCAAT+TGG - chr3_4:57543567-57543586 None:intergenic 25.0%
!! AAAAGCATAATGCAAGTAAT+TGG + chr3_4:57543705-57543724 Msa0509210:CDS 25.0%
! TTGCTTGAAGATTTGTAAAT+TGG + chr3_4:57543992-57544011 Msa0509210:three_prime_UTR 25.0%
! TTAAGAATGCCAAATTCAAA+TGG + chr3_4:57544118-57544137 Msa0509210:three_prime_UTR 25.0%
CACTCAGATTCTTCATATAA+TGG - chr3_4:57539331-57539350 None:intergenic 30.0%
AAACATAAGCACACTTACTT+GGG - chr3_4:57539448-57539467 None:intergenic 30.0%
AAAACATAAGCACACTTACT+TGG - chr3_4:57539449-57539468 None:intergenic 30.0%
!!! TTTTTTACGGGTCAAGTTAA+CGG + chr3_4:57539496-57539515 Msa0509210:intron 30.0%
!!! TCCAACGTTTTTTTGAATGT+CGG - chr3_4:57539555-57539574 None:intergenic 30.0%
TTTACACCGACAATATTGTA+CGG - chr3_4:57539698-57539717 None:intergenic 30.0%
! ATTGTTGTTATGTTAGAACC+TGG + chr3_4:57539869-57539888 Msa0509210:intron 30.0%
!! TTTACAAGTTTTGGCAAACA+AGG + chr3_4:57540022-57540041 Msa0509210:intron 30.0%
!! GACATTTTATCTGTTTCTTC+TGG + chr3_4:57540084-57540103 Msa0509210:intron 30.0%
! TTTATCTGTTTCTTCTGGAA+TGG + chr3_4:57540089-57540108 Msa0509210:intron 30.0%
!! TTATCTGTTTCTTCTGGAAT+GGG + chr3_4:57540090-57540109 Msa0509210:intron 30.0%
GGACCTTACATGAATTAATA+CGG + chr3_4:57540111-57540130 Msa0509210:intron 30.0%
TGTCCGTATTAATTCATGTA+AGG - chr3_4:57540117-57540136 None:intergenic 30.0%
CTAAATTAGTCCACCTAAAT+TGG + chr3_4:57540221-57540240 Msa0509210:intron 30.0%
! CAGAGTCAGAAATTTAGTTT+AGG + chr3_4:57540545-57540564 Msa0509210:intron 30.0%
! GAGTCAGAAATTTAGTTTAG+GGG + chr3_4:57540547-57540566 Msa0509210:intron 30.0%
! AGTCAGAAATTTAGTTTAGG+GGG + chr3_4:57540548-57540567 Msa0509210:intron 30.0%
AACAATGAAAATGCAAACGT+AGG + chr3_4:57540784-57540803 Msa0509210:intron 30.0%
AATCGCAATAAGTGAATCAT+TGG + chr3_4:57540814-57540833 Msa0509210:intron 30.0%
AATAAGTGAATCATTGGTAG+TGG + chr3_4:57540820-57540839 Msa0509210:intron 30.0%
!!! TTTTTTCCTCAAAAGTTCTG+AGG + chr3_4:57541113-57541132 Msa0509210:intron 30.0%
!! TTTTTCCTCAAAAGTTCTGA+GGG + chr3_4:57541114-57541133 Msa0509210:intron 30.0%
CAAATGTTAATCCTCAAACT+TGG - chr3_4:57541175-57541194 None:intergenic 30.0%
! AATGACCACTATTTTCTTGA+TGG + chr3_4:57541206-57541225 Msa0509210:intron 30.0%
ACTTTCTACTACTAGTTGAT+TGG - chr3_4:57541374-57541393 None:intergenic 30.0%
CTTGAAAATAAAATTTCCCG+TGG - chr3_4:57541419-57541438 None:intergenic 30.0%
ATCAAAGGTTTCCATAGATT+TGG - chr3_4:57542011-57542030 None:intergenic 30.0%
! TTCCCCATTTATACATTTTG+AGG + chr3_4:57542198-57542217 Msa0509210:intron 30.0%
GTTGTGGAACATTATTTACA+TGG + chr3_4:57542365-57542384 Msa0509210:intron 30.0%
! TTATGTGACAACTAAGTTGA+TGG - chr3_4:57542417-57542436 None:intergenic 30.0%
!!! GGTTGATTTTTTGCATGATT+TGG - chr3_4:57542452-57542471 None:intergenic 30.0%
AAAATCAACCCAAAATGCAT+AGG + chr3_4:57542462-57542481 Msa0509210:intron 30.0%
! CATTTTTAAATCCGCAGATT+TGG - chr3_4:57542524-57542543 None:intergenic 30.0%
CAAATCTGCGGATTTAAAAA+TGG + chr3_4:57542522-57542541 Msa0509210:intron 30.0%
TAAAAATGGAGAGACCAAAA+TGG + chr3_4:57542536-57542555 Msa0509210:intron 30.0%
AAGAAAAGGATTGACAGATT+TGG - chr3_4:57542586-57542605 None:intergenic 30.0%
ATGCTACAATTGAGTTCTAT+TGG + chr3_4:57542656-57542675 Msa0509210:CDS 30.0%
TGCTACAATTGAGTTCTATT+GGG + chr3_4:57542657-57542676 Msa0509210:CDS 30.0%
GAGTTTGATTCAAGAAGAAA+AGG - chr3_4:57542685-57542704 None:intergenic 30.0%
! CTATGAAAAGTATGCTTAGA+TGG + chr3_4:57543019-57543038 Msa0509210:CDS 30.0%
!! TATTTTTAATGCGTGAAAGC+GGG - chr3_4:57543162-57543181 None:intergenic 30.0%
TCACGCATTAAAAATATCTG+TGG + chr3_4:57543166-57543185 Msa0509210:intron 30.0%
! ACAATTTTCTACGCTACAAA+TGG + chr3_4:57543347-57543366 Msa0509210:intron 30.0%
!!! AAGTACTATGTTATTTTGGC+AGG + chr3_4:57543592-57543611 Msa0509210:intron 30.0%
AATTGAAGAACCCTCATATT+GGG + chr3_4:57543668-57543687 Msa0509210:CDS 30.0%
GTGATGTTGAGAAATGTTAT+GGG - chr3_4:57543756-57543775 None:intergenic 30.0%
AGTGATGTTGAGAAATGTTA+TGG - chr3_4:57543757-57543776 None:intergenic 30.0%
CATCTATCTACAAAAAGCAA+TGG + chr3_4:57543808-57543827 Msa0509210:CDS 30.0%
GTTTCAAGGATAAAACAACT+TGG - chr3_4:57543937-57543956 None:intergenic 30.0%
CCAAGAAATCTGTTCAATTT+CGG - chr3_4:57543964-57543983 None:intergenic 30.0%
AAATTGGAAGATAAAGCATG+TGG + chr3_4:57544008-57544027 Msa0509210:three_prime_UTR 30.0%
AATTGGAAGATAAAGCATGT+GGG + chr3_4:57544009-57544028 Msa0509210:three_prime_UTR 30.0%
TTGGTTAGAAAATGAGCTAT+AGG + chr3_4:57544052-57544071 Msa0509210:three_prime_UTR 30.0%
TGGTTAGAAAATGAGCTATA+GGG + chr3_4:57544053-57544072 Msa0509210:three_prime_UTR 30.0%
! GGGGTTTTACATGAAAAAAT+TGG + chr3_4:57544073-57544092 Msa0509210:three_prime_UTR 30.0%
TGAATTTGGCATTCTTAAAG+TGG - chr3_4:57544116-57544135 None:intergenic 30.0%
ATGTTAGCACCATTTGAATT+TGG - chr3_4:57544130-57544149 None:intergenic 30.0%
TGAACTTAAATCAGTCTCTT+GGG + chr3_4:57544239-57544258 Msa0509210:three_prime_UTR 30.0%
GAAACATAGTGATACAAGTT+AGG + chr3_4:57544267-57544286 Msa0509210:three_prime_UTR 30.0%
! TTGTTGTTGTTGTTGTTCAA+AGG + chr3_4:57544335-57544354 Msa0509210:three_prime_UTR 30.0%
! TTCTGAGAAGAAGAGAAGAA+GGG - chr3_4:57539036-57539055 None:intergenic 35.0%
!! AAAGAGTGTGATTTGTTCAG+TGG + chr3_4:57539277-57539296 Msa0509210:CDS 35.0%
GTCAACTGTGGTTGTATATA+CGG - chr3_4:57539355-57539374 None:intergenic 35.0%
! CTTTCTTTTTGTATACGTGC+TGG + chr3_4:57539473-57539492 Msa0509210:intron 35.0%
!!! GTATACGTGCTGGTTTTTTA+CGG + chr3_4:57539483-57539502 Msa0509210:intron 35.0%
!!! TATACGTGCTGGTTTTTTAC+GGG + chr3_4:57539484-57539503 Msa0509210:intron 35.0%
ACCGACATTCAAAAAAACGT+TGG + chr3_4:57539551-57539570 Msa0509210:intron 35.0%
TAATGGCCGTACAATATTGT+CGG + chr3_4:57539689-57539708 Msa0509210:intron 35.0%
TTGTGATATCTGTCTGCAAA+AGG + chr3_4:57539841-57539860 Msa0509210:intron 35.0%
TTATGAGGGACCAAAATTAG+TGG - chr3_4:57540160-57540179 None:intergenic 35.0%
GTGTCGCAATCAAATTATGA+GGG - chr3_4:57540174-57540193 None:intergenic 35.0%
TGTGTCGCAATCAAATTATG+AGG - chr3_4:57540175-57540194 None:intergenic 35.0%
!!! GACTTATTTTGGTGTGTTCA+CGG - chr3_4:57540428-57540447 None:intergenic 35.0%
AATGAAAATGCAAACGTAGG+AGG + chr3_4:57540787-57540806 Msa0509210:intron 35.0%
!! GGTGGTAACGATTTTTGTTA+AGG + chr3_4:57540956-57540975 Msa0509210:intron 35.0%
TGTTAATCCTCAAACTTGGA+CGG - chr3_4:57541171-57541190 None:intergenic 35.0%
GTCAACCATCAAGAAAATAG+TGG - chr3_4:57541214-57541233 None:intergenic 35.0%
! TGCACTGTCTTTTTACCATA+TGG + chr3_4:57541295-57541314 Msa0509210:intron 35.0%
! GCACTGTCTTTTTACCATAT+GGG + chr3_4:57541296-57541315 Msa0509210:intron 35.0%
! CACTGTCTTTTTACCATATG+GGG + chr3_4:57541297-57541316 Msa0509210:intron 35.0%
AGAGATCCAATGAAAAACCA+CGG + chr3_4:57541399-57541418 Msa0509210:intron 35.0%
! AATTTCCCGTGGTTTTTCAT+TGG - chr3_4:57541408-57541427 None:intergenic 35.0%
! ACATTTTTGTCCGTTGAGAT+AGG - chr3_4:57541619-57541638 None:intergenic 35.0%
TTAATGCTAGAAACACTTCG+TGG + chr3_4:57541896-57541915 Msa0509210:CDS 35.0%
TAATGCTAGAAACACTTCGT+GGG + chr3_4:57541897-57541916 Msa0509210:CDS 35.0%
TTCCATAGATTTGGCATGTT+GGG - chr3_4:57542002-57542021 None:intergenic 35.0%
TTTCCATAGATTTGGCATGT+TGG - chr3_4:57542003-57542022 None:intergenic 35.0%
ATTCCGCGATTATAGTAACT+CGG + chr3_4:57542156-57542175 Msa0509210:intron 35.0%
AAACCGAGTTACTATAATCG+CGG - chr3_4:57542162-57542181 None:intergenic 35.0%
ATGATGTGAAACTGTCTAAG+TGG + chr3_4:57542271-57542290 Msa0509210:intron 35.0%
TGATGTGAAACTGTCTAAGT+GGG + chr3_4:57542272-57542291 Msa0509210:intron 35.0%
CAATTCTATCAGTTACCCTA+TGG - chr3_4:57542723-57542742 None:intergenic 35.0%
AAGGGTTCAATCAATAAGCA+CGG + chr3_4:57542748-57542767 Msa0509210:CDS 35.0%
ATTAGGGGCTAATTATGCAA+CGG - chr3_4:57542909-57542928 None:intergenic 35.0%
!! TCTACTCAAATTTTCAGGCT+TGG + chr3_4:57542934-57542953 Msa0509210:intron 35.0%
!! TTTCAGGCTTGGTTCTTTTA+AGG + chr3_4:57542945-57542964 Msa0509210:intron 35.0%
TAGATGGGTGAAAATGAACA+TGG + chr3_4:57543035-57543054 Msa0509210:CDS 35.0%
!! AAGAAGACTCTAGTCTTGTT+GGG - chr3_4:57543063-57543082 None:intergenic 35.0%
TATACTCACTTTCCATGAGA+AGG - chr3_4:57543099-57543118 None:intergenic 35.0%
! ATTTTTAATGCGTGAAAGCG+GGG - chr3_4:57543161-57543180 None:intergenic 35.0%
! GCTACAAATGGTTTAAGACT+CGG + chr3_4:57543359-57543378 Msa0509210:intron 35.0%
CAATATGAGGGTTCTTCAAT+TGG - chr3_4:57543669-57543688 None:intergenic 35.0%
CAATTGAAGAACCCTCATAT+TGG + chr3_4:57543667-57543686 Msa0509210:CDS 35.0%
ATTGAAGAACCCTCATATTG+GGG + chr3_4:57543669-57543688 Msa0509210:CDS 35.0%
TAGATGTATGTGCGTCTTTA+CGG - chr3_4:57543794-57543813 None:intergenic 35.0%
!! TCAATTTCGGTGTTGTTTCA+AGG - chr3_4:57543951-57543970 None:intergenic 35.0%
CCGAAATTGAACAGATTTCT+TGG + chr3_4:57543961-57543980 Msa0509210:three_prime_UTR 35.0%
GGTTAGAAAATGAGCTATAG+GGG + chr3_4:57544054-57544073 Msa0509210:three_prime_UTR 35.0%
GTGAACTTAAATCAGTCTCT+TGG + chr3_4:57544238-57544257 Msa0509210:three_prime_UTR 35.0%
GTGAAACTCAATTGTGACTT+TGG + chr3_4:57544374-57544393 Msa0509210:intron 35.0%
AAAACTCAATATCGCCCAAA+TGG - chr3_4:57544424-57544443 None:intergenic 35.0%
TTGAATGAGTTTGCCATGCA+TGG - chr3_4:57539013-57539032 None:intergenic 40.0%
!! GTTCTGAGAAGAAGAGAAGA+AGG - chr3_4:57539037-57539056 None:intergenic 40.0%
AAGAGATAGGAAGAAAGACG+AGG - chr3_4:57539064-57539083 None:intergenic 40.0%
!! GAAGAGGATGATGGATAAGA+GGG - chr3_4:57539089-57539108 None:intergenic 40.0%
!! TGAAGAGGATGATGGATAAG+AGG - chr3_4:57539090-57539109 None:intergenic 40.0%
GAAGATGAAGAGGAAGTCAT+GGG - chr3_4:57539131-57539150 None:intergenic 40.0%
! CTTTTTCTCCACCTCTTGAA+CGG - chr3_4:57539233-57539252 None:intergenic 40.0%
!! AGTGTGATTTGTTCAGTGGA+AGG + chr3_4:57539281-57539300 Msa0509210:CDS 40.0%
!! TGATTTGTTCAGTGGAAGGT+GGG + chr3_4:57539285-57539304 Msa0509210:CDS 40.0%
GGGTAAAGGATGAGTTAACT+AGG + chr3_4:57539305-57539324 Msa0509210:CDS 40.0%
TGTTCTTGACAAGTCAACTG+TGG - chr3_4:57539367-57539386 None:intergenic 40.0%
!! CAGTTGACTTGTCAAGAACA+TGG + chr3_4:57539367-57539386 Msa0509210:CDS 40.0%
TCGATTTCACAATTCCAGCA+AGG + chr3_4:57539945-57539964 Msa0509210:intron 40.0%
! TTTGTTTGGTGAAACCTTGC+TGG - chr3_4:57539962-57539981 None:intergenic 40.0%
!! ACAAGTTTTGGCAAACAAGG+CGG + chr3_4:57540025-57540044 Msa0509210:intron 40.0%
ATTCTTCCTAGCGCCAATTT+AGG - chr3_4:57540237-57540256 None:intergenic 40.0%
ATAAGAATGAACTGGGACCT+GGG - chr3_4:57540290-57540309 None:intergenic 40.0%
AATAAGAATGAACTGGGACC+TGG - chr3_4:57540291-57540310 None:intergenic 40.0%
AGTTCGTGACATTTCCATAC+AGG - chr3_4:57540357-57540376 None:intergenic 40.0%
!!! GACTCTTCTTTCTTTTTCGG+TGG + chr3_4:57540938-57540957 Msa0509210:intron 40.0%
! TTCTTGATGGTTGACACTTC+TGG + chr3_4:57541219-57541238 Msa0509210:intron 40.0%
TGGTAAAAAGACAGTGCATG+TGG - chr3_4:57541293-57541312 None:intergenic 40.0%
!! TTCTAGCTGTGTCTTTTTGC+AGG - chr3_4:57541342-57541361 None:intergenic 40.0%
GAGATCCAATGAAAAACCAC+GGG + chr3_4:57541400-57541419 Msa0509210:intron 40.0%
TAATTCAGGTGAGTGCATTC+AGG - chr3_4:57541781-57541800 None:intergenic 40.0%
TGAATGCACTCACCTGAATT+AGG + chr3_4:57541780-57541799 Msa0509210:intron 40.0%
TCGCATTGAATCTGTAGCAT+TGG - chr3_4:57541874-57541893 None:intergenic 40.0%
GGAAGAGGATGATGTTTGTT+GGG + chr3_4:57541918-57541937 Msa0509210:CDS 40.0%
! GAAGAGGATGATGTTTGTTG+GGG + chr3_4:57541919-57541938 Msa0509210:CDS 40.0%
TCCATAGATTTGGCATGTTG+GGG - chr3_4:57542001-57542020 None:intergenic 40.0%
GAAGACAGTGAGAGAATCAA+AGG - chr3_4:57542026-57542045 None:intergenic 40.0%
ATCAACCCAAAATGCATAGG+TGG + chr3_4:57542465-57542484 Msa0509210:intron 40.0%
TCAACCCAAAATGCATAGGT+GGG + chr3_4:57542466-57542485 Msa0509210:intron 40.0%
CCTATGGATGACAGCATTAT+CGG - chr3_4:57542707-57542726 None:intergenic 40.0%
CGATAATGCTGTCATCCATA+GGG + chr3_4:57542705-57542724 Msa0509210:CDS 40.0%
TCAATAAGCACGGTCGTTAT+TGG + chr3_4:57542758-57542777 Msa0509210:CDS 40.0%
TGGTCTTCAACACCTATCTT+TGG + chr3_4:57542797-57542816 Msa0509210:CDS 40.0%
TCTTCAACACCTATCTTTGG+TGG + chr3_4:57542800-57542819 Msa0509210:CDS 40.0%
CTTCAACACCTATCTTTGGT+GGG + chr3_4:57542801-57542820 Msa0509210:CDS 40.0%
GATTGTTGAGATGCAAACAG+AGG + chr3_4:57542981-57543000 Msa0509210:CDS 40.0%
! ACTTTTCATAGCCATGCGAT+AGG - chr3_4:57543010-57543029 None:intergenic 40.0%
!! GAAGAAGACTCTAGTCTTGT+TGG - chr3_4:57543064-57543083 None:intergenic 40.0%
CAAGCCACTAAAATCTTACC+CGG + chr3_4:57543398-57543417 Msa0509210:intron 40.0%
AAGCCACTAAAATCTTACCC+GGG + chr3_4:57543399-57543418 Msa0509210:intron 40.0%
!! ATGTTTTATTGTTCTCGGGG+AGG - chr3_4:57543433-57543452 None:intergenic 40.0%
GCTAGGAGGTAAGTAAAACA+TGG - chr3_4:57543514-57543533 None:intergenic 40.0%
!! ATTTTGGCAGGAGTATAGAG+TGG + chr3_4:57543604-57543623 Msa0509210:intron 40.0%
!! TTTTGGCAGGAGTATAGAGT+GGG + chr3_4:57543605-57543624 Msa0509210:intron 40.0%
GAATCAGATCCCCAATATGA+GGG - chr3_4:57543681-57543700 None:intergenic 40.0%
TGAATCAGATCCCCAATATG+AGG - chr3_4:57543682-57543701 None:intergenic 40.0%
TACAATCAGAGTAGCTAGCA+GGG - chr3_4:57543863-57543882 None:intergenic 40.0%
ATACAATCAGAGTAGCTAGC+AGG - chr3_4:57543864-57543883 None:intergenic 40.0%
GCTACTCTGATTGTATACAC+TGG + chr3_4:57543868-57543887 Msa0509210:CDS 40.0%
TGTATACACTGGTGTTTACC+TGG + chr3_4:57543879-57543898 Msa0509210:CDS 40.0%
! ATGGTGCTAACATATGTACG+CGG + chr3_4:57544137-57544156 Msa0509210:three_prime_UTR 40.0%
TTGGATCAAATAGTGATGCG+AGG + chr3_4:57544393-57544412 Msa0509210:intron 40.0%
TGGATCAAATAGTGATGCGA+GGG + chr3_4:57544394-57544413 Msa0509210:intron 40.0%
GGATAAGAGGGTGAAGAGAT+AGG - chr3_4:57539077-57539096 None:intergenic 45.0%
GGAAGATGAAGAGGAAGTCA+TGG - chr3_4:57539132-57539151 None:intergenic 45.0%
! ACAGCGTGGGTTTCAGTTTT+GGG - chr3_4:57539178-57539197 None:intergenic 45.0%
! TACAGCGTGGGTTTCAGTTT+TGG - chr3_4:57539179-57539198 None:intergenic 45.0%
! CGTTGAAAAGAGTACAGCGT+GGG - chr3_4:57539191-57539210 None:intergenic 45.0%
! CCACGCTGTACTCTTTTCAA+CGG + chr3_4:57539189-57539208 Msa0509210:CDS 45.0%
CGTTCAAGAGGTGGAGAAAA+AGG + chr3_4:57539231-57539250 Msa0509210:CDS 45.0%
!! GTGATTTGTTCAGTGGAAGG+TGG + chr3_4:57539284-57539303 Msa0509210:CDS 45.0%
! TGACTTGTCAAGAACATGGC+CGG + chr3_4:57539371-57539390 Msa0509210:CDS 45.0%
TTTACGGGTCAAGTTAACGG+TGG + chr3_4:57539499-57539518 Msa0509210:intron 45.0%
GTGGGTCAGAGTGTAATTGT+TGG + chr3_4:57539521-57539540 Msa0509210:intron 45.0%
TTTGCAGGTCATGTCCCAAT+TGG - chr3_4:57541327-57541346 None:intergenic 45.0%
GTCCACAAGTCCTATCTCAA+CGG + chr3_4:57541606-57541625 Msa0509210:intron 45.0%
TAGAAACACTTCGTGGGAAG+AGG + chr3_4:57541903-57541922 Msa0509210:CDS 45.0%
GGGAAGAGGATGATGTTTGT+TGG + chr3_4:57541917-57541936 Msa0509210:CDS 45.0%
CATGTTGGGGAATGAGATGA+TGG - chr3_4:57541988-57542007 None:intergenic 45.0%
TCCCCAACATGCCAAATCTA+TGG + chr3_4:57541997-57542016 Msa0509210:CDS 45.0%
TAAGAGGTAGCTAGCTACCT+TGG - chr3_4:57542053-57542072 None:intergenic 45.0%
GCACATAAGCTATGGGTAAG+AGG - chr3_4:57542069-57542088 None:intergenic 45.0%
ATCGCGGAATTAGCTATCGA+GGG - chr3_4:57542146-57542165 None:intergenic 45.0%
AATCGCGGAATTAGCTATCG+AGG - chr3_4:57542147-57542166 None:intergenic 45.0%
GAGATGCTTATGTGACGACT+TGG + chr3_4:57542245-57542264 Msa0509210:intron 45.0%
CAACCCAAAATGCATAGGTG+GGG + chr3_4:57542467-57542486 Msa0509210:intron 45.0%
AACCCAAAATGCATAGGTGG+GGG + chr3_4:57542468-57542487 Msa0509210:intron 45.0%
! TTCCCCCACCTATGCATTTT+GGG - chr3_4:57542473-57542492 None:intergenic 45.0%
! TTTCCCCCACCTATGCATTT+TGG - chr3_4:57542474-57542493 None:intergenic 45.0%
AAACTAAGGGGCCAAATCTG+CGG + chr3_4:57542510-57542529 Msa0509210:intron 45.0%
CCGATAATGCTGTCATCCAT+AGG + chr3_4:57542704-57542723 Msa0509210:CDS 45.0%
AAGCACGGTCGTTATTGGAA+AGG + chr3_4:57542763-57542782 Msa0509210:CDS 45.0%
!! TTGGAAAGGCGCAGACATTT+TGG + chr3_4:57542777-57542796 Msa0509210:CDS 45.0%
! ACCTATCTTTGGTGGGTAAC+TGG + chr3_4:57542808-57542827 Msa0509210:CDS 45.0%
! CTACCCGGGTAAGATTTTAG+TGG - chr3_4:57543405-57543424 None:intergenic 45.0%
!! ACGAACCGTTCTAGAGAATC+TGG + chr3_4:57543460-57543479 Msa0509210:intron 45.0%
! TTTGGCAGGAGTATAGAGTG+GGG + chr3_4:57543606-57543625 Msa0509210:intron 45.0%
ATGTGCGTCTTTACGGTAGT+TGG - chr3_4:57543787-57543806 None:intergenic 45.0%
GGATCAAATAGTGATGCGAG+GGG + chr3_4:57544395-57544414 Msa0509210:intron 45.0%
GATCAAATAGTGATGCGAGG+GGG + chr3_4:57544396-57544415 Msa0509210:intron 45.0%
!! AATAAATAATAAAAAACATT+CGG + chr3_4:57539608-57539627 Msa0509210:intron 5.0%
!!! ATGATTATTTTTTATTTTTT+TGG + chr3_4:57544033-57544052 Msa0509210:three_prime_UTR 5.0%
!!! AGTGTTTTGGGGTCCATGCA+TGG + chr3_4:57538997-57539016 Msa0509210:exon 50.0%
!! ATGGGTGTTGAGGATGATGG+CGG - chr3_4:57539113-57539132 None:intergenic 50.0%
!! GTCATGGGTGTTGAGGATGA+TGG - chr3_4:57539116-57539135 None:intergenic 50.0%
! AGAGGAAGTCATGGGTGTTG+AGG - chr3_4:57539123-57539142 None:intergenic 50.0%
GATGTGGACGGAAGATGAAG+AGG - chr3_4:57539141-57539160 None:intergenic 50.0%
GGAGTTGTTGGAGATGTGGA+CGG - chr3_4:57539153-57539172 None:intergenic 50.0%
!!! CAGTTTTGGGGTGGAGTTGT+TGG - chr3_4:57539165-57539184 None:intergenic 50.0%
! CAGCGTGGGTTTCAGTTTTG+GGG - chr3_4:57539177-57539196 None:intergenic 50.0%
! CCGTTGAAAAGAGTACAGCG+TGG - chr3_4:57539192-57539211 None:intergenic 50.0%
GTCCAACAACACCGTTCAAG+AGG + chr3_4:57539219-57539238 Msa0509210:CDS 50.0%
!! CACCTCTTGAACGGTGTTGT+TGG - chr3_4:57539224-57539243 None:intergenic 50.0%
CAACAACACCGTTCAAGAGG+TGG + chr3_4:57539222-57539241 Msa0509210:CDS 50.0%
GTTCAGTGGAAGGTGGGTAA+AGG + chr3_4:57539291-57539310 Msa0509210:CDS 50.0%
AACCGGCGGTACTCTTTATC+CGG - chr3_4:57539397-57539416 None:intergenic 50.0%
!! ATAAAGAGTACCGCCGGTTG+CGG + chr3_4:57539398-57539417 Msa0509210:CDS 50.0%
CACATTGCAGAGTTCGAACC+AGG - chr3_4:57539890-57539909 None:intergenic 50.0%
GGCAAACAAGGCGGTAGAAT+CGG + chr3_4:57540034-57540053 Msa0509210:intron 50.0%
AGTCCACCTAAATTGGCGCT+AGG + chr3_4:57540228-57540247 Msa0509210:intron 50.0%
CTTCCTAGCGCCAATTTAGG+TGG - chr3_4:57540234-57540253 None:intergenic 50.0%
GAATCGAAACTGAGACCTCG+AGG + chr3_4:57540253-57540272 Msa0509210:intron 50.0%
! ACGGTCCCTCAGAACTTTTG+AGG - chr3_4:57541122-57541141 None:intergenic 50.0%
AGGAGGATCAGTAGTGGTCA+CGG - chr3_4:57541141-57541160 None:intergenic 50.0%
GCTAGAAGGAGGATCAGTAG+TGG - chr3_4:57541147-57541166 None:intergenic 50.0%
CAAACTTGGACGGAGCTAGA+AGG - chr3_4:57541161-57541180 None:intergenic 50.0%
! TCTAGCTCCGTCCAAGTTTG+AGG + chr3_4:57541161-57541180 Msa0509210:intron 50.0%
ACCATATGGGGTCCTCCAAT+TGG + chr3_4:57541309-57541328 Msa0509210:intron 50.0%
CCATATGGGGTCCTCCAATT+GGG + chr3_4:57541310-57541329 Msa0509210:intron 50.0%
GTCCGTTGAGATAGGACTTG+TGG - chr3_4:57541611-57541630 None:intergenic 50.0%
TTGTTGGGGACTCCCTCAAT+CGG + chr3_4:57541933-57541952 Msa0509210:CDS 50.0%
GACATACTGACCCCGATTGA+GGG - chr3_4:57541948-57541967 None:intergenic 50.0%
AGACATACTGACCCCGATTG+AGG - chr3_4:57541949-57541968 None:intergenic 50.0%
!! GGGGAATGAGATGATGGAGA+AGG - chr3_4:57541982-57542001 None:intergenic 50.0%
TCTCACTGTCTTCACAGCCA+AGG + chr3_4:57542033-57542052 Msa0509210:CDS 50.0%
GCCAGTTACCCACCAAAGAT+AGG - chr3_4:57542812-57542831 None:intergenic 50.0%
AACAGAGGAAGCCTATCGCA+TGG + chr3_4:57542996-57543015 Msa0509210:CDS 50.0%
AAACTCGGAGTCCCTGTCTT+CGG + chr3_4:57543130-57543149 Msa0509210:intron 50.0%
! TCGGGCCAGATTCTCTAGAA+CGG - chr3_4:57543468-57543487 None:intergenic 50.0%
TCATTGTAGCAGTTCCCTCC+TGG - chr3_4:57543639-57543658 None:intergenic 50.0%
!! GCTAGTTGCTCTGGAGTCAA+TGG - chr3_4:57543837-57543856 None:intergenic 50.0%
! GATGGCGGTGAAGAGGATGA+TGG - chr3_4:57539098-57539117 None:intergenic 55.0%
!! TGAGGATGATGGCGGTGAAG+AGG - chr3_4:57539105-57539124 None:intergenic 55.0%
GGGTGGAGTTGTTGGAGATG+TGG - chr3_4:57539157-57539176 None:intergenic 55.0%
!!! CGTGGGTTTCAGTTTTGGGG+TGG - chr3_4:57539174-57539193 None:intergenic 55.0%
TTGTCAAGAACATGGCCGGC+CGG + chr3_4:57539375-57539394 Msa0509210:CDS 55.0%
ACGGGTCAAGTTAACGGTGG+TGG + chr3_4:57539502-57539521 Msa0509210:intron 55.0%
CGGGTCAAGTTAACGGTGGT+GGG + chr3_4:57539503-57539522 Msa0509210:intron 55.0%
TCGAAACTGAGACCTCGAGG+TGG + chr3_4:57540256-57540275 Msa0509210:intron 55.0%
ACTTGGACGGAGCTAGAAGG+AGG - chr3_4:57541158-57541177 None:intergenic 55.0%
CCCAATTGGAGGACCCCATA+TGG - chr3_4:57541313-57541332 None:intergenic 55.0%
GCAGGTCATGTCCCAATTGG+AGG - chr3_4:57541324-57541343 None:intergenic 55.0%
TGTTGGGGACTCCCTCAATC+GGG + chr3_4:57541934-57541953 Msa0509210:CDS 55.0%
ACCAGCATGTCGCCTTCTCA+TGG + chr3_4:57543084-57543103 Msa0509210:CDS 55.0%
TCCATGAGAAGGCGACATGC+TGG - chr3_4:57543088-57543107 None:intergenic 55.0%
AACTCGGAGTCCCTGTCTTC+GGG + chr3_4:57543131-57543150 Msa0509210:intron 55.0%
GCAGTGTGACTGCACACAGT+CGG - chr3_4:57543536-57543555 None:intergenic 55.0%
! GCAGGAGTATAGAGTGGGGA+GGG + chr3_4:57543610-57543629 Msa0509210:intron 55.0%
! CAGGAGTATAGAGTGGGGAG+GGG + chr3_4:57543611-57543630 Msa0509210:intron 55.0%
!! GCAGGGTTAGCTAGTTGCTC+TGG - chr3_4:57543846-57543865 None:intergenic 55.0%
TGATGCGAGGGGGTTCCATT+TGG + chr3_4:57544406-57544425 Msa0509210:intron 55.0%
GATGCGAGGGGGTTCCATTT+GGG + chr3_4:57544407-57544426 Msa0509210:intron 55.0%
GGCGGTACTCTTTATCCGGC+CGG - chr3_4:57539393-57539412 None:intergenic 60.0%
!! GGCCGGATAAAGAGTACCGC+CGG + chr3_4:57539392-57539411 Msa0509210:CDS 60.0%
TTGGGAAGATCGCAGCCGTG+AGG - chr3_4:57539430-57539449 None:intergenic 60.0%
GTTGGGGACTCCCTCAATCG+GGG + chr3_4:57541935-57541954 Msa0509210:CDS 60.0%
ACTCGGAGTCCCTGTCTTCG+GGG + chr3_4:57543132-57543151 Msa0509210:intron 60.0%
TCGGGGAGGATTGTCTACCC+GGG - chr3_4:57543419-57543438 None:intergenic 60.0%
CTCGGGGAGGATTGTCTACC+CGG - chr3_4:57543420-57543439 None:intergenic 60.0%
ACTGCACACAGTCGGCTAGG+AGG - chr3_4:57543528-57543547 None:intergenic 60.0%
GTGACTGCACACAGTCGGCT+AGG - chr3_4:57543531-57543550 None:intergenic 60.0%
! GGCAGGAGTATAGAGTGGGG+AGG + chr3_4:57543609-57543628 Msa0509210:intron 60.0%
!! AAGAGTACCGCCGGTTGCGG+TGG + chr3_4:57539401-57539420 Msa0509210:CDS 65.0%
! TGGGAGTGTGCTCCACCTCG+AGG - chr3_4:57540271-57540290 None:intergenic 65.0%
TCGAGGTGGAGCACACTCCC+AGG + chr3_4:57540270-57540289 Msa0509210:intron 65.0%
GCGGGGAATCCCCGAAGACA+GGG - chr3_4:57543144-57543163 None:intergenic 65.0%
AGCGGGGAATCCCCGAAGAC+AGG - chr3_4:57543145-57543164 None:intergenic 65.0%
ATAGAGTGGGGAGGGGAGCC+AGG + chr3_4:57543618-57543637 Msa0509210:CDS 65.0%
CGTGAGGCTGCCACCGCAAC+CGG - chr3_4:57539414-57539433 None:intergenic 70.0%
CGGTTGCGGTGGCAGCCTCA+CGG + chr3_4:57539412-57539431 Msa0509210:CDS 70.0%
AGTGGGGAGGGGAGCCAGGA+GGG + chr3_4:57543622-57543641 Msa0509210:CDS 70.0%
GAGGCTGCCACCGCAACCGG+CGG - chr3_4:57539411-57539430 None:intergenic 75.0%
GAGTGGGGAGGGGAGCCAGG+AGG + chr3_4:57543621-57543640 Msa0509210:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57538912 57544445 57538912 ID=Msa0509210;Name=Msa0509210
chr3_4 mRNA 57538912 57544445 57538912 ID=Msa0509210-mRNA-1;Parent=Msa0509210;Name=Msa0509210-mRNA-1;_AED=0.38;_eAED=0.38;_QI=104|1|1|1|0.8|0.66|6|463|434
chr3_4 exon 57538912 57539449 57538912 ID=Msa0509210-mRNA-1:exon:13169;Parent=Msa0509210-mRNA-1
chr3_4 exon 57541883 57542054 57541883 ID=Msa0509210-mRNA-1:exon:13170;Parent=Msa0509210-mRNA-1
chr3_4 exon 57542649 57542848 57542649 ID=Msa0509210-mRNA-1:exon:13171;Parent=Msa0509210-mRNA-1
chr3_4 exon 57542951 57543109 57542951 ID=Msa0509210-mRNA-1:exon:13172;Parent=Msa0509210-mRNA-1
chr3_4 exon 57543614 57544386 57543614 ID=Msa0509210-mRNA-1:exon:13173;Parent=Msa0509210-mRNA-1
chr3_4 exon 57544416 57544445 57544416 ID=Msa0509210-mRNA-1:exon:13174;Parent=Msa0509210-mRNA-1
chr3_4 five_prime_UTR 57538912 57539015 57538912 ID=Msa0509210-mRNA-1:five_prime_utr;Parent=Msa0509210-mRNA-1
chr3_4 CDS 57539016 57539449 57539016 ID=Msa0509210-mRNA-1:cds;Parent=Msa0509210-mRNA-1
chr3_4 CDS 57541883 57542054 57541883 ID=Msa0509210-mRNA-1:cds;Parent=Msa0509210-mRNA-1
chr3_4 CDS 57542649 57542848 57542649 ID=Msa0509210-mRNA-1:cds;Parent=Msa0509210-mRNA-1
chr3_4 CDS 57542951 57543109 57542951 ID=Msa0509210-mRNA-1:cds;Parent=Msa0509210-mRNA-1
chr3_4 CDS 57543614 57543953 57543614 ID=Msa0509210-mRNA-1:cds;Parent=Msa0509210-mRNA-1
chr3_4 three_prime_UTR 57543954 57544386 57543954 ID=Msa0509210-mRNA-1:three_prime_utr;Parent=Msa0509210-mRNA-1
chr3_4 three_prime_UTR 57544416 57544445 57544416 ID=Msa0509210-mRNA-1:three_prime_utr;Parent=Msa0509210-mRNA-1
Gene Sequence

>Msa0509210

ATGGCAAACTCATTCAACCCTTCTTCTCTTCTTCTCAGAACAAAGCCTCGTCTTTCTTCCTATCTCTTCACCCTCTTATCCATCATCCTCTTCACCGCCATCATCCTCAACACCCATGACTTCCTCTTCATCTTCCGTCCACATCTCCAACAACTCCACCCCAAAACTGAAACCCACGCTGTACTCTTTTCAACGGTGACTCAGTCCAACAACACCGTTCAAGAGGTGGAGAAAAAGGAAGAAGAAGAAGATGAAGAAGAGAAAGAGTGTGATTTGTTCAGTGGAAGGTGGGTAAAGGATGAGTTAACTAGGCCATTATATGAAGAATCTGAGTGTCCGTATATACAACCACAGTTGACTTGTCAAGAACATGGCCGGCCGGATAAAGAGTACCGCCGGTTGCGGTGGCAGCCTCACGGCTGCGATCTTCCCAAATTCAATGCGAGTTTAATGCTAGAAACACTTCGTGGGAAGAGGATGATGTTTGTTGGGGACTCCCTCAATCGGGGTCAGTATGTCTCTTTGATATGCCTTCTCCATCATCTCATTCCCCAACATGCCAAATCTATGGAAACCTTTGATTCTCTCACTGTCTTCACAGCCAAGGAATACAATGCTACAATTGAGTTCTATTGGGCACCTTTTCTTCTTGAATCAAACTCCGATAATGCTGTCATCCATAGGGTAACTGATAGAATTGTAAGAAAGGGTTCAATCAATAAGCACGGTCGTTATTGGAAAGGCGCAGACATTTTGGTCTTCAACACCTATCTTTGGTGGGTAACTGGCTCCAACATGAAGATATTGCTTGGTTCTTTTAAGGATGAAGTAAAAGAGATTGTTGAGATGCAAACAGAGGAAGCCTATCGCATGGCTATGAAAAGTATGCTTAGATGGGTGAAAATGAACATGGATCCCAACAAGACTAGAGTCTTCTTCACCAGCATGTCGCCTTCTCATGGAAAGAGTATAGAGTGGGGAGGGGAGCCAGGAGGGAACTGCTACAATGAAACAACTCCAATTGAAGAACCCTCATATTGGGGATCTGATTCATTGAAAAGCATAATGCAAGTAATTGGAGAAGAGTTCAGAAAATCAAAATTTCCCATAACATTTCTCAACATCACTCAACTTTCCAACTACCGTAAAGACGCACATACATCTATCTACAAAAAGCAATGGAATCCATTGACTCCAGAGCAACTAGCTAACCCTGCTAGCTACTCTGATTGTATACACTGGTGTTTACCTGGACTTCAAGATACTTGGAACGAGCTTCTATTTGCCAAGTTGTTTTATCCTTGA
Protein sequence

>Msa0509210

MANSFNPSSLLLRTKPRLSSYLFTLLSIILFTAIILNTHDFLFIFRPHLQQLHPKTETHAVLFSTVTQSNNTVQEVEKKEEEEDEEEKECDLFSGRWVKDELTRPLYEESECPYIQPQLTCQEHGRPDKEYRRLRWQPHGCDLPKFNASLMLETLRGKRMMFVGDSLNRGQYVSLICLLHHLIPQHAKSMETFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVIHRVTDRIVRKGSINKHGRYWKGADILVFNTYLWWVTGSNMKILLGSFKDEVKEIVEMQTEEAYRMAMKSMLRWVKMNMDPNKTRVFFTSMSPSHGKSIEWGGEPGGNCYNETTPIEEPSYWGSDSLKSIMQVIGEEFRKSKFPITFLNITQLSNYRKDAHTSIYKKQWNPLTPEQLANPASYSDCIHWCLPGLQDTWNELLFAKLFYP*