AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511070 MtrunA17_Chr1g0203051 49.155 592 297 1 25 616 34 621 0.0 635
Msa0511070 MtrunA17_Chr2g0287651 34.218 678 436 4 74 749 75 744 1.24e-132 416
Msa0511070 MtrunA17_Chr1g0202341 32.143 560 367 6 79 630 56 610 2.06e-100 326
Msa0511070 MtrunA17_Chr5g0448761 30.476 630 419 10 79 691 65 692 3.28e-100 328
Msa0511070 MtrunA17_Chr8g0363841 29.947 561 380 6 81 632 24 580 6.49e-86 286
Msa0511070 MtrunA17_Chr1g0198761 28.255 722 457 18 80 764 53 750 4.57e-83 281
Msa0511070 MtrunA17_Chr3g0082121 28.443 668 425 13 14 672 12 635 2.95e-80 272
Msa0511070 MtrunA17_Chr2g0324011 27.788 565 387 9 80 632 16 571 4.95e-76 258
Msa0511070 MtrunA17_Chr2g0308841 49.091 220 112 0 409 628 7 226 7.48e-76 247
Msa0511070 MtrunA17_Chr2g0296781 28.852 662 429 17 80 718 3 645 2.29e-71 248
Msa0511070 MtrunA17_Chr6g0458391 27.469 557 375 11 80 629 231 765 5.41e-71 248
Msa0511070 MtrunA17_Chr6g0458391 29.358 218 111 8 33 222 47 249 2.55e-15 80.5
Msa0511070 MtrunA17_Chr5g0441581 27.357 647 434 15 37 670 1 624 1.22e-69 243
Msa0511070 MtrunA17_Chr1g0203721 27.040 625 430 12 80 686 69 685 1.56e-68 243
Msa0511070 MtrunA17_Chr5g0431001 33.182 440 269 10 72 491 61 495 5.51e-67 231
Msa0511070 MtrunA17_Chr6g0477261 32.522 452 274 10 198 629 5 445 4.35e-66 232
Msa0511070 MtrunA17_Chr5g0448511 29.231 390 270 2 249 633 13 401 1.39e-64 225
Msa0511070 MtrunA17_Chr3g0118611 29.032 434 300 3 248 676 118 548 4.76e-64 229
Msa0511070 MtrunA17_Chr1g0207551 27.817 568 378 14 78 629 38 589 2.09e-63 228
Msa0511070 MtrunA17_Chr2g0287061 28.623 559 352 13 79 632 188 704 2.80e-63 227
Msa0511070 MtrunA17_Chr2g0329031 27.402 562 380 12 77 628 17 560 1.56e-61 221
Msa0511070 MtrunA17_Chr2g0276841 25.841 565 387 12 80 626 76 626 1.27e-60 218
Msa0511070 MtrunA17_Chr3g0080351 26.699 618 398 14 78 673 80 664 8.75e-60 218
Msa0511070 MtrunA17_Chr5g0440451 25.086 582 382 11 80 631 49 606 3.20e-58 214
Msa0511070 MtrunA17_Chr2g0291581 26.702 573 385 15 72 629 69 621 3.87e-57 207
Msa0511070 MtrunA17_Chr2g0290391 26.049 572 376 12 80 624 57 608 5.36e-55 202
Msa0511070 MtrunA17_Chr2g0291591 27.656 546 354 14 44 570 36 559 5.47e-53 194
Msa0511070 MtrunA17_Chr2g0294841 25.318 628 402 16 29 624 11 603 2.30e-52 195
Msa0511070 MtrunA17_Chr1g0196541 26.748 572 379 12 80 629 3 556 3.78e-52 194
Msa0511070 MtrunA17_Chr1g0171741 46.193 197 95 4 11 203 72 261 1.34e-48 172
Msa0511070 MtrunA17_Chr1g0164591 30.263 304 200 3 163 461 11 307 9.90e-43 158
Msa0511070 MtrunA17_Chr8g0389811 38.889 180 98 2 18 185 16 195 1.46e-34 131
Msa0511070 MtrunA17_Chr2g0331371 40.645 155 84 2 56 210 37 183 1.43e-31 122
Msa0511070 MtrunA17_Chr7g0258861 27.778 288 200 6 80 362 16 300 1.44e-28 117
Msa0511070 MtrunA17_Chr6g0473421 48.421 95 49 0 56 150 37 131 5.97e-26 104
Msa0511070 MtrunA17_Chr8g0340801 40.952 105 62 0 185 289 1 105 3.62e-22 92.0
Msa0511070 MtrunA17_Chr1g0172931 41.284 109 63 1 48 156 51 158 8.53e-22 92.8
Msa0511070 MtrunA17_Chr1g0149131 30.909 110 71 1 353 457 1 110 2.20e-13 67.8
Msa0511070 MtrunA17_Chr4g0075451 27.011 174 122 3 232 403 48 218 1.11e-11 65.9
Msa0511070 MtrunA17_Chr4g0033611 31.638 177 87 8 28 177 7 176 4.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511070 AT4G38180.1 30.435 667 434 16 11 654 2 661 1.49e-95 316
Msa0511070 AT3G06250.2 28.947 570 346 13 68 629 186 704 1.64e-70 247
Msa0511070 AT3G06250.1 28.947 570 346 13 68 629 186 704 1.64e-70 247
Msa0511070 AT3G06250.3 28.947 570 346 13 68 629 186 704 1.64e-70 247
Msa0511070 AT5G18960.2 28.988 583 334 17 67 629 206 728 1.91e-69 244
Msa0511070 AT5G18960.1 28.988 583 334 17 67 629 206 728 1.91e-69 244
Msa0511070 AT4G15090.1 26.603 624 402 15 78 673 55 650 3.30e-64 231
Msa0511070 AT4G15090.5 26.603 624 402 15 78 673 55 650 3.30e-64 231
Msa0511070 AT4G15090.3 26.603 624 402 15 78 673 55 650 3.30e-64 231
Msa0511070 AT4G15090.2 26.603 624 402 15 78 673 55 650 3.30e-64 231
Msa0511070 AT4G15090.4 26.603 624 402 15 78 673 55 650 3.30e-64 231
Msa0511070 AT3G22170.2 26.016 615 406 13 78 673 74 658 1.12e-62 226
Msa0511070 AT3G22170.1 26.016 615 406 13 78 673 74 658 1.12e-62 226
Msa0511070 AT2G27110.2 25.490 561 381 11 78 632 53 582 8.88e-62 224
Msa0511070 AT2G27110.1 25.490 561 381 11 78 632 53 582 8.88e-62 224
Msa0511070 AT1G10240.2 26.250 560 391 12 80 626 54 604 9.20e-61 218
Msa0511070 AT1G10240.1 26.250 560 391 12 80 626 54 604 9.20e-61 218
Msa0511070 AT1G52520.1 27.444 583 357 16 79 629 90 638 5.49e-57 208
Msa0511070 AT5G28530.1 26.178 573 386 12 80 628 61 620 1.41e-56 206
Msa0511070 AT5G28530.3 26.252 579 374 14 80 628 61 616 5.88e-56 204
Msa0511070 AT5G28530.2 26.252 579 374 14 80 628 61 616 5.88e-56 204
Msa0511070 AT1G76320.3 27.289 568 371 14 79 629 2 544 1.50e-55 203
Msa0511070 AT1G76320.1 27.289 568 371 14 79 629 2 544 2.49e-55 204
Msa0511070 AT1G76320.4 27.289 568 371 14 79 629 2 544 2.49e-55 204
Msa0511070 AT1G76320.2 27.289 568 371 14 79 629 2 544 2.86e-55 203
Msa0511070 AT2G27110.3 27.110 391 275 5 248 632 51 437 3.15e-55 203
Msa0511070 AT1G80010.1 28.473 583 380 16 71 629 92 661 6.07e-55 202
Msa0511070 AT2G32250.8 24.212 603 388 13 79 668 2 548 2.28e-49 187
Msa0511070 AT2G32250.7 24.212 603 388 13 79 668 2 548 2.58e-49 187
Msa0511070 AT2G32250.5 24.212 603 388 13 79 668 43 589 2.60e-49 186
Msa0511070 AT2G32250.2 23.987 617 372 13 79 668 43 589 2.87e-49 187
Msa0511070 AT2G32250.4 23.987 617 372 13 79 668 43 589 2.87e-49 187
Msa0511070 AT4G38170.1 27.809 356 250 3 280 629 45 399 3.09e-49 182
Msa0511070 AT2G32250.6 24.212 603 388 13 79 668 43 589 3.23e-49 187
Msa0511070 AT2G32250.1 24.212 603 388 13 79 668 43 589 3.23e-49 187
Msa0511070 AT2G32250.3 24.212 603 388 13 79 668 43 589 3.23e-49 187
Msa0511070 AT4G19990.5 24.884 647 401 17 79 692 26 620 1.33e-46 178
Msa0511070 AT4G19990.3 24.884 647 401 17 79 692 26 620 1.38e-46 178
Msa0511070 AT4G19990.4 24.884 647 401 17 79 692 26 620 1.38e-46 178
Msa0511070 AT4G19990.7 24.884 647 401 17 79 692 40 634 1.49e-46 178
Msa0511070 AT4G19990.6 24.884 647 401 17 79 692 26 620 1.74e-46 178
Msa0511070 AT4G19990.2 24.884 647 401 17 79 692 26 620 1.74e-46 178
Msa0511070 AT4G19990.1 23.974 609 387 15 112 692 3 563 1.54e-41 162
Msa0511070 AT5G28530.4 23.614 559 355 14 80 628 61 557 6.05e-40 157
Msa0511070 AT5G28530.5 23.717 565 343 16 80 628 61 553 2.34e-39 155

Find 200 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCCTCTTCCAAAATTT+TGG 0.055419 3_4:+60391890 Msa0511070:CDS
CTAAGAGTGGTAACTGATTT+TGG 0.153996 3_4:-60386863 None:intergenic
TTATGTGAATCCCAAAATTT+TGG 0.158151 3_4:-60391901 None:intergenic
CAAATATAACGTTATGATTA+TGG 0.220259 3_4:-60390949 None:intergenic
CAGTTGGAATACAATGTTTA+TGG 0.237348 3_4:+60390848 Msa0511070:CDS
CGAGCATATTATTGCACTAT+TGG 0.263946 3_4:+60391783 Msa0511070:CDS
TTTGGAGAGGAAACTGATTA+TGG 0.278386 3_4:-60386845 None:intergenic
CCTTGAAACGCATGTAATTA+AGG 0.299268 3_4:-60391465 None:intergenic
GTCTCGATTCTATAGTTCTT+TGG 0.305028 3_4:+60390613 Msa0511070:CDS
TACGTGAATTGTTGCTAAAT+AGG 0.306357 3_4:+60392987 Msa0511070:three_prime_UTR
CTGAGTTTGTGGGTCGGTTC+AGG 0.307659 3_4:+60391182 Msa0511070:CDS
AAGATGATTAAAAGCAATAA+AGG 0.314816 3_4:+60390296 Msa0511070:CDS
CTGCCATAGACAAGGGTTTA+GGG 0.319412 3_4:+60390343 Msa0511070:CDS
TAAACCATTCACGGATTGTT+GGG 0.328289 3_4:-60387062 None:intergenic
AATGAAGAATGCTATTAAAA+AGG 0.328811 3_4:+60391087 Msa0511070:CDS
AATCATAACGTTATATTTGC+TGG 0.332689 3_4:+60390953 Msa0511070:CDS
CATGGGGACTTGATCCCTTC+AGG 0.334509 3_4:-60390181 None:intergenic
ATTATGATCTTGGTGAGTTT+CGG 0.343046 3_4:+60391221 Msa0511070:CDS
TCTGCCATAGACAAGGGTTT+AGG 0.350465 3_4:+60390342 Msa0511070:CDS
CGTTGGAATTCCTGAGTTTG+TGG 0.354561 3_4:+60391171 Msa0511070:CDS
GCACATCCTTTACTTCTTAC+CGG 0.360870 3_4:-60392120 None:intergenic
TTACCTATTATGTTGAGCTT+TGG 0.362228 3_4:+60392926 Msa0511070:three_prime_UTR
CCTCCCTAAACCCTTGTCTA+TGG 0.364704 3_4:-60390346 None:intergenic
TCAGGAGGGTATGAAAAGAT+AGG 0.369722 3_4:+60390644 Msa0511070:CDS
AGTCCAAAGCTCAACATAAT+AGG 0.372572 3_4:-60392929 None:intergenic
TCAACAAATTCTCTGATGAT+TGG 0.374918 3_4:-60392757 None:intergenic
CAAGGGTTTAGGGAGGATAG+AGG 0.385779 3_4:+60390353 Msa0511070:CDS
GTAGACTTGAACACCTGTTT+TGG 0.386376 3_4:+60390810 Msa0511070:CDS
ACTGAAATGGTTGATACATT+TGG 0.389032 3_4:+60391253 Msa0511070:CDS
CTCAAATTTCCTTGTCTCAT+GGG 0.391555 3_4:-60390198 None:intergenic
TGGATGTGAAGCAAAATTTC+GGG 0.393377 3_4:+60390424 Msa0511070:CDS
AACTGGTATGCTAGAATGAA+TGG 0.398717 3_4:+60390254 Msa0511070:CDS
ATCAATATATGTAATTTCTT+CGG 0.400227 3_4:-60390132 None:intergenic
AGTTCTTTGGCAAACCAATC+AGG 0.400318 3_4:+60390626 Msa0511070:CDS
CAAATATCATTGTCCCTTAG+TGG 0.402765 3_4:+60390907 Msa0511070:CDS
CAGAACTACCTCCCGGGTTG+AGG 0.403771 3_4:+60391366 Msa0511070:CDS
TCCACTCCCGTTTAGATGCT+TGG 0.407392 3_4:-60391687 None:intergenic
TGAAATCTTGTTTGTAGTAC+CGG 0.408808 3_4:-60391523 None:intergenic
AGATGATTAAAAGCAATAAA+GGG 0.410338 3_4:+60390297 Msa0511070:CDS
CACAATCTATGATAAGCATT+TGG 0.411893 3_4:-60391115 None:intergenic
CTGAAATGGTTGATACATTT+GGG 0.415729 3_4:+60391254 Msa0511070:CDS
TTGTTGTGGCAGGGACTAGA+AGG 0.416156 3_4:+60390029 Msa0511070:intron
CTGGGTTCAGAACTACCTCC+CGG 0.421640 3_4:+60391359 Msa0511070:CDS
TGTTCTACTTGTAGAGAATT+CGG 0.421760 3_4:+60392189 Msa0511070:CDS
GTGGATGTGAAGCAAAATTT+CGG 0.423877 3_4:+60390423 Msa0511070:CDS
TGCAAGAAGATGGAGTCATT+TGG 0.424186 3_4:+60391751 Msa0511070:CDS
TCTTTATGCTTGTCATCTAA+AGG 0.428350 3_4:+60393013 Msa0511070:three_prime_UTR
TCTTGCACGGTCTGCAGATA+TGG 0.428535 3_4:+60391609 Msa0511070:CDS
TAATACCGTCACACCAAAAC+AGG 0.430331 3_4:-60390823 None:intergenic
TGAGGGGTTACATTCAGAAA+TGG 0.433282 3_4:+60391384 Msa0511070:CDS
TTCTTCTAATTACGGTGATC+CGG 0.435140 3_4:+60391504 Msa0511070:CDS
CTAGGTGCCACCAGAGTCTT+CGG 0.438729 3_4:-60391829 None:intergenic
GTAAGTACCAAGCATCTAAA+CGG 0.438925 3_4:+60391680 Msa0511070:CDS
GAGGGGTTACATTCAGAAAT+GGG 0.440826 3_4:+60391385 Msa0511070:CDS
CCATCAGTAATGACAGATAT+AGG 0.442377 3_4:-60391055 None:intergenic
CCTTAATTACATGCGTTTCA+AGG 0.443433 3_4:+60391465 Msa0511070:CDS
TCATAAAATTAAACCATTCA+CGG 0.444067 3_4:-60387071 None:intergenic
TGGCTTATGAGTTCTATAAC+TGG 0.448330 3_4:+60390237 Msa0511070:CDS
TTCACATCCACACCGAGTCT+CGG 0.449810 3_4:-60390411 None:intergenic
ACTCAAATTTCCTTGTCTCA+TGG 0.450621 3_4:-60390199 None:intergenic
TTAGCATGATGTCGACGTAT+TGG 0.451740 3_4:-60392231 None:intergenic
AGAACTACCTCCCGGGTTGA+GGG 0.453294 3_4:+60391367 Msa0511070:CDS
CCTTTACTTCTTACCGGAGC+AGG 0.454778 3_4:-60392114 None:intergenic
GACTAGAAGGCTTGTCAGAT+GGG 0.454938 3_4:+60390042 Msa0511070:CDS
AAGGATATATATAATCAGAT+AGG 0.456945 3_4:+60390677 Msa0511070:CDS
CAAGTGTTCTTGCAAGAAGA+TGG 0.456949 3_4:+60391741 Msa0511070:CDS
CACTTGAACACATCATCATC+TGG 0.458537 3_4:-60391724 None:intergenic
CAAAGCATGGAGCGTTGTGC+TGG 0.460157 3_4:+60391544 Msa0511070:CDS
TATTCGTGTTGAACAAAGTT+CGG 0.469680 3_4:-60393057 None:intergenic
TTGGCATTTGATGCAACATA+TGG 0.469717 3_4:+60390878 Msa0511070:CDS
CTTATCATAGATTGTGTGCT+TGG 0.471231 3_4:+60391122 Msa0511070:CDS
CATAAACATTGTATTCCAAC+TGG 0.473084 3_4:-60390847 None:intergenic
TCGGCGCAAGTGGACTGAAA+TGG 0.474417 3_4:+60391240 Msa0511070:CDS
ATGTTGGGTGATTATGATCT+TGG 0.475526 3_4:+60391211 Msa0511070:CDS
CGTCACTTACTCGGAAGAAA+AGG 0.476403 3_4:+60392154 Msa0511070:CDS
CTTTAGCTTCGTCACTTACT+CGG 0.477552 3_4:+60392145 Msa0511070:CDS
CTGATGATTGGTCTCTTGAA+AGG 0.479719 3_4:-60392745 None:intergenic
TGAACGACATGTTGAAGGTT+GGG 0.479986 3_4:+60390582 Msa0511070:CDS
CGGTTCAGGATATGCATGTT+GGG 0.481144 3_4:+60391196 Msa0511070:CDS
TTGTTTGAACATATTTGAGA+TGG 0.482088 3_4:+60389835 Msa0511070:exon
GTTGGAATTCCTGAGTTTGT+GGG 0.483948 3_4:+60391172 Msa0511070:CDS
CGGGTTTACACTCACGCTTA+CGG 0.484549 3_4:-60390391 None:intergenic
TGATGATTTCAATGATCATA+TGG 0.490037 3_4:+60391990 Msa0511070:CDS
TCACATCCACACCGAGTCTC+GGG 0.490046 3_4:-60390410 None:intergenic
TAAGTACCAAGCATCTAAAC+GGG 0.498777 3_4:+60391681 Msa0511070:CDS
AAAGATAGGGTTTCGAAAGA+AGG 0.498787 3_4:+60390658 Msa0511070:CDS
GATATTGAGGGATCCTGCTC+CGG 0.506504 3_4:+60392101 Msa0511070:CDS
TTAAACCATTCACGGATTGT+TGG 0.506733 3_4:-60387063 None:intergenic
TCGGTTCAGGATATGCATGT+TGG 0.508996 3_4:+60391195 Msa0511070:CDS
TGGCAGTTTCTCAAAGTCAC+AGG 0.510246 3_4:-60392955 None:intergenic
GGAAGAAAAGGAAGCGAACT+CGG 0.510589 3_4:+60392166 Msa0511070:CDS
TCATCAGAGAATTTGTTGAA+TGG 0.514239 3_4:+60392761 Msa0511070:CDS
ATGAACGACATGTTGAAGGT+TGG 0.516485 3_4:+60390581 Msa0511070:CDS
TGCTAGAATGAATGGGTTTG+CGG 0.520491 3_4:+60390262 Msa0511070:CDS
ACCTTTGTCTGCCATAGACA+AGG 0.522203 3_4:+60390335 Msa0511070:CDS
CCTGCTCCGGTAAGAAGTAA+AGG 0.527933 3_4:+60392114 Msa0511070:CDS
ACATGTTGAAGGTTGGGATA+GGG 0.527977 3_4:+60390588 Msa0511070:CDS
CTACCCCAACAATCCGTGAA+TGG 0.529060 3_4:+60387058 Msa0511070:five_prime_UTR
AAGCTCATGGTTGTGTTGAT+CGG 0.533255 3_4:-60390492 None:intergenic
TTGGTGAGTTTCGGCGCAAG+TGG 0.533626 3_4:+60391230 Msa0511070:CDS
TATTCTTCGCATGGACCTGA+AGG 0.535724 3_4:+60390166 Msa0511070:CDS
TTGGGTTGCATGACAACAAG+TGG 0.536611 3_4:+60391272 Msa0511070:CDS
GCAGATGAACGACATGTTGA+AGG 0.538363 3_4:+60390577 Msa0511070:CDS
GGACTAGAAGGCTTGTCAGA+TGG 0.538439 3_4:+60390041 Msa0511070:CDS
CAGGAGGGTATGAAAAGATA+GGG 0.541529 3_4:+60390645 Msa0511070:CDS
ACTGGTATGCTAGAATGAAT+GGG 0.542467 3_4:+60390255 Msa0511070:CDS
CTGAATGTAACCCCTCAACC+CGG 0.542990 3_4:-60391378 None:intergenic
GATGCCGGTAGTGTTGAGGC+TGG 0.544026 3_4:+60390101 Msa0511070:CDS
TCAGAAGATGGAAACAAAGA+GGG 0.545568 3_4:+60392032 Msa0511070:CDS
AATGCTCTACAATATCTTCG+TGG 0.547074 3_4:+60390734 Msa0511070:CDS
AACGCCAGAAAACACCACTA+AGG 0.547338 3_4:-60390921 None:intergenic
CGCCACACCGTTGATGGAGA+AGG 0.547855 3_4:+60390788 Msa0511070:CDS
CTGAACCGACCCACAAACTC+AGG 0.548623 3_4:-60391181 None:intergenic
TGCCGGTAGTGTTGAGGCTG+GGG 0.549068 3_4:+60390103 Msa0511070:CDS
TGATGGTTTGAGTCTAAGAG+TGG 0.549070 3_4:-60386876 None:intergenic
TGCTGCTGATATTCAGAAGA+TGG 0.549307 3_4:+60392020 Msa0511070:CDS
CCTATATCTGTCATTACTGA+TGG 0.550426 3_4:+60391055 Msa0511070:CDS
ATGCTCTACAATATCTTCGT+GGG 0.552217 3_4:+60390735 Msa0511070:CDS
ACAAAGAGGGGTTTACATGA+TGG 0.555956 3_4:+60392045 Msa0511070:CDS
CCCTTTCAGTCAAAATCAGA+AGG 0.557367 3_4:+60386986 Msa0511070:five_prime_UTR
TTTCAATGATCATATGGAGC+AGG 0.557911 3_4:+60391996 Msa0511070:CDS
TTCCCCAGCCTCAACACTAC+CGG 0.558077 3_4:-60390105 None:intergenic
ATATGTGTAGGCAATAGAAA+AGG 0.560818 3_4:+60389775 Msa0511070:intron
TCAAATTTCCTTGTCTCATG+GGG 0.562298 3_4:-60390197 None:intergenic
TCTACAATATCTTCGTGGGC+TGG 0.564296 3_4:+60390739 Msa0511070:CDS
AGTGCAATAATATGCTCGCA+TGG 0.564516 3_4:-60391778 None:intergenic
ATGCCGGTAGTGTTGAGGCT+GGG 0.568159 3_4:+60390102 Msa0511070:CDS
CGAAGACTCTGGTGGCACCT+AGG 0.569038 3_4:+60391830 Msa0511070:CDS
GTGTGACGGTATTAGCCAGT+TGG 0.570082 3_4:+60390832 Msa0511070:CDS
GGATGAATCTGTTGCATCTG+TGG 0.570836 3_4:+60389886 Msa0511070:CDS
ACTCTTCACCTAAAAGCTCA+TGG 0.573630 3_4:-60390505 None:intergenic
CAATGTTTATGGTGATGTGT+TGG 0.573702 3_4:+60390859 Msa0511070:CDS
AAAGTGACCATGAGATATTG+AGG 0.575026 3_4:+60392088 Msa0511070:CDS
CAAGGAGGATATTCTTCGCA+TGG 0.577671 3_4:+60390157 Msa0511070:CDS
AAGTGACCATGAGATATTGA+GGG 0.577878 3_4:+60392089 Msa0511070:CDS
CAATAATATGCTCGCATGGG+AGG 0.579108 3_4:-60391774 None:intergenic
ACCAAGCATCTAAACGGGAG+TGG 0.580235 3_4:+60391686 Msa0511070:CDS
GAATTCCTGAGTTTGTGGGT+CGG 0.582743 3_4:+60391176 Msa0511070:CDS
AGCAAATTAGCAAGTGAGAG+TGG 0.583973 3_4:+60391967 Msa0511070:CDS
TTCAGAAGATGGAAACAAAG+AGG 0.584534 3_4:+60392031 Msa0511070:CDS
AGAAATAGCAACTAGAGAAG+AGG 0.585131 3_4:+60392803 Msa0511070:exon
GACATGTTGAAGGTTGGGAT+AGG 0.585269 3_4:+60390587 Msa0511070:CDS
TATTTCGTGATATTCTTGCA+CGG 0.585796 3_4:+60391596 Msa0511070:CDS
TGCAGAATTGCCGAAGACTC+TGG 0.586703 3_4:+60391819 Msa0511070:CDS
GGTAGTGTTGAGGCTGGGGA+AGG 0.589625 3_4:+60390107 Msa0511070:CDS
TTCGCATTCTTTGTCCACCT+AGG 0.592170 3_4:-60391847 None:intergenic
ACAAACAAGATTTCAAAGCA+TGG 0.592389 3_4:+60391531 Msa0511070:CDS
AAAAGAAGAAACTTATGTGT+GGG 0.592719 3_4:+60390994 Msa0511070:CDS
ACGCCAGAAAACACCACTAA+GGG 0.595174 3_4:-60390920 None:intergenic
TAGATATGTTCTCACAACGT+TGG 0.595477 3_4:+60390453 Msa0511070:CDS
CAGGATCCCTCAATATCTCA+TGG 0.595823 3_4:-60392095 None:intergenic
TGGGTTCAGAACTACCTCCC+GGG 0.596128 3_4:+60391360 Msa0511070:CDS
GTCACTTTGACTTGAATCAG+TGG 0.596570 3_4:-60392073 None:intergenic
TGCGGCGTGAAGTGAAGTGA+GGG 0.599509 3_4:-60387105 None:intergenic
GAGACTGTTGACGATGATGC+CGG 0.599698 3_4:+60390086 Msa0511070:CDS
CAGTGACAACTCTGTAAGCA+AGG 0.601197 3_4:+60392296 Msa0511070:CDS
CCTTTGTCTGCCATAGACAA+GGG 0.606480 3_4:+60390336 Msa0511070:CDS
AAGTCTACCTTCTCCATCAA+CGG 0.606864 3_4:-60390795 None:intergenic
GATGATTAAAAGCAATAAAG+GGG 0.606914 3_4:+60390298 Msa0511070:CDS
GTGCAATAATATGCTCGCAT+GGG 0.609249 3_4:-60391777 None:intergenic
GGCATGCATGTGTGTCAACA+TGG 0.612865 3_4:+60392720 Msa0511070:CDS
CCCTTGTCTATGGCAGACAA+AGG 0.613763 3_4:-60390336 None:intergenic
GAACTACCTCCCGGGTTGAG+GGG 0.614332 3_4:+60391368 Msa0511070:CDS
GATCAAGTCCCCATGAGACA+AGG 0.614765 3_4:+60390189 Msa0511070:CDS
AATTACATATATTGATAACA+AGG 0.616446 3_4:+60390139 Msa0511070:CDS
GCTAAGAATCTGTGGCGGAA+AGG 0.616612 3_4:+60387133 Msa0511070:five_prime_UTR
CGATGATGCCGGTAGTGTTG+AGG 0.625130 3_4:+60390097 Msa0511070:CDS
ACAGATTCTTAGCACAATTG+CGG 0.625719 3_4:-60387123 None:intergenic
AAACCATTCACGGATTGTTG+GGG 0.626769 3_4:-60387061 None:intergenic
TGAATGTAACCCCTCAACCC+GGG 0.629395 3_4:-60391377 None:intergenic
TCTTTGGCAAACCAATCAGG+AGG 0.631246 3_4:+60390629 Msa0511070:CDS
TTGCGGCGTGAAGTGAAGTG+AGG 0.632728 3_4:-60387106 None:intergenic
TGGGTTGCATGACAACAAGT+GGG 0.633652 3_4:+60391273 Msa0511070:CDS
TGTTGAAGAGAATATGCAGA+TGG 0.634807 3_4:+60389865 Msa0511070:CDS
GTGAGTGTAAACCCGAGACT+CGG 0.636551 3_4:+60390399 Msa0511070:CDS
AGGGGTTACATTCAGAAATG+GGG 0.639622 3_4:+60391386 Msa0511070:CDS
TTGTTGTGATGATCTTCATG+TGG 0.640203 3_4:-60392267 None:intergenic
GCAATTGTGCTAAGAATCTG+TGG 0.642795 3_4:+60387125 Msa0511070:five_prime_UTR
ATTCTTCGCATGGACCTGAA+GGG 0.645936 3_4:+60390167 Msa0511070:CDS
CAGAAGATGGAAACAAAGAG+GGG 0.647832 3_4:+60392033 Msa0511070:CDS
CGCAACGCAGCATCTAACGT+TGG 0.649284 3_4:+60391154 Msa0511070:CDS
AGACTCTGGTGGCACCTAGG+TGG 0.651025 3_4:+60391833 Msa0511070:CDS
GTATGCAAAGAGAAAGATGT+GGG 0.653690 3_4:+60391306 Msa0511070:CDS
ACTAGAAGGCTTGTCAGATG+GGG 0.659814 3_4:+60390043 Msa0511070:CDS
TACCTTCTCCATCAACGGTG+TGG 0.664097 3_4:-60390790 None:intergenic
TAATTACATGCGTTTCAAGG+AGG 0.673295 3_4:+60391468 Msa0511070:CDS
AAGAGGGGTTTACATGATGG+CGG 0.673541 3_4:+60392048 Msa0511070:CDS
CTTTGGCAAACCAATCAGGA+GGG 0.675668 3_4:+60390630 Msa0511070:CDS
TGGGCCACAGCACACATACG+CGG 0.678201 3_4:+60391325 Msa0511070:CDS
AAAGAACTATAGAATCGAGA+CGG 0.680829 3_4:-60390611 None:intergenic
TGAATCTGTTGCATCTGTGG+AGG 0.686563 3_4:+60389889 Msa0511070:CDS
AGAATTGCCGAAGACTCTGG+TGG 0.695739 3_4:+60391822 Msa0511070:CDS
CCATAGACAAGGGTTTAGGG+AGG 0.704078 3_4:+60390346 Msa0511070:CDS
TACATATATTGATAACAAGG+AGG 0.707799 3_4:+60390142 Msa0511070:CDS
TAGGTGGACAAAGAATGCGA+AGG 0.720693 3_4:+60391849 Msa0511070:CDS
TGTATGCAAAGAGAAAGATG+TGG 0.731423 3_4:+60391305 Msa0511070:CDS
TGTAAACCCGAGACTCGGTG+TGG 0.731893 3_4:+60390404 Msa0511070:CDS
ATGTAACCCCTCAACCCGGG+AGG 0.732309 3_4:-60391374 None:intergenic
ATTGTGCTAAGAATCTGTGG+CGG 0.736573 3_4:+60387128 Msa0511070:five_prime_UTR
ATTGCCGCGTATGTGTGCTG+TGG 0.739517 3_4:-60391329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAACAAATCTAATTTTAA+AGG - chr3_4:60388937-60388956 None:intergenic 10.0%
!! AAAACAAAATACAATAATAT+TGG - chr3_4:60389986-60390005 None:intergenic 10.0%
!!! ATATTATTGTATTTTGTTTT+TGG + chr3_4:60389986-60390005 Msa0511070:intron 10.0%
!!! GAAGAAATTAGTTAATTTTA+GGG - chr3_4:60386925-60386944 None:intergenic 15.0%
!!! AGAAGAAATTAGTTAATTTT+AGG - chr3_4:60386926-60386945 None:intergenic 15.0%
!!! ATCTAAAACAATAAATTACA+AGG - chr3_4:60387334-60387353 None:intergenic 15.0%
!! ATTTCATATTTAAAGAAAGT+TGG + chr3_4:60387750-60387769 Msa0511070:intron 15.0%
!! TAATAAAATTCATTTCTGTT+AGG + chr3_4:60388409-60388428 Msa0511070:intron 15.0%
!!! TAATTTTATTAAGCAAAACT+TGG + chr3_4:60389008-60389027 Msa0511070:intron 15.0%
!!! ATGCTATTTGAAAAAAAATA+AGG + chr3_4:60389658-60389677 Msa0511070:intron 15.0%
!! AAAAAAAATAAGGTTCATAT+AGG + chr3_4:60389668-60389687 Msa0511070:intron 15.0%
!!! TTTTTGTTTTGAAAATAACA+TGG + chr3_4:60389744-60389763 Msa0511070:intron 15.0%
!! AGAAGAAAATACAATAATAT+TGG - chr3_4:60389935-60389954 None:intergenic 15.0%
!!! ATATTATTGTATTTTCTTCT+TGG + chr3_4:60389935-60389954 Msa0511070:intron 15.0%
!! ATCAATATATGTAATTTCTT+CGG - chr3_4:60390135-60390154 None:intergenic 15.0%
!!! AATTACATATATTGATAACA+AGG + chr3_4:60390139-60390158 Msa0511070:CDS 15.0%
!! TAAAAGATAATTATAACGAT+GGG - chr3_4:60392361-60392380 None:intergenic 15.0%
!! TTAAAAGATAATTATAACGA+TGG - chr3_4:60392362-60392381 None:intergenic 15.0%
!!! TTGTTTTTCAAAGAAAATTA+AGG - chr3_4:60392554-60392573 None:intergenic 15.0%
!!! TATTTATGTTTCTTTTGTTT+CGG + chr3_4:60392682-60392701 Msa0511070:intron 15.0%
!!! ACTTGATTTTCTAATTTTGA+TGG - chr3_4:60386896-60386915 None:intergenic 20.0%
!! TCATAAAATTAAACCATTCA+CGG - chr3_4:60387074-60387093 None:intergenic 20.0%
!!! TTTTTCCTTATCTTCAAATA+TGG + chr3_4:60387206-60387225 Msa0511070:intron 20.0%
!!! TTCAAATATGGTTTTGAATT+TGG + chr3_4:60387218-60387237 Msa0511070:intron 20.0%
!!! AATTTGGTTTTATAATGTGA+GGG + chr3_4:60387234-60387253 Msa0511070:intron 20.0%
!! CAGAAATTAAAACTAGAAAT+GGG - chr3_4:60387292-60387311 None:intergenic 20.0%
!! TCAGAAATTAAAACTAGAAA+TGG - chr3_4:60387293-60387312 None:intergenic 20.0%
!! AAAACTCTAACAAATTTCAA+AGG - chr3_4:60387377-60387396 None:intergenic 20.0%
!!! AATTTATTTTCTCATGAACT+AGG + chr3_4:60387583-60387602 Msa0511070:intron 20.0%
!! TCACTTTCACAATTTATTAA+TGG - chr3_4:60388048-60388067 None:intergenic 20.0%
!! TTTGTAACTTATCTCAATTT+AGG - chr3_4:60388587-60388606 None:intergenic 20.0%
!! AATTGAGATAAGTTACAAAT+AGG + chr3_4:60388588-60388607 Msa0511070:intron 20.0%
!! TAGACAAAGAAAAATATGAT+TGG - chr3_4:60388747-60388766 None:intergenic 20.0%
!! TGCGTTTAATAATAAATCTA+TGG - chr3_4:60389533-60389552 None:intergenic 20.0%
!! AAGATGATTAAAAGCAATAA+AGG + chr3_4:60390296-60390315 Msa0511070:CDS 20.0%
!! AGATGATTAAAAGCAATAAA+GGG + chr3_4:60390297-60390316 Msa0511070:CDS 20.0%
!! AAGGATATATATAATCAGAT+AGG + chr3_4:60390677-60390696 Msa0511070:CDS 20.0%
!! CAAATATAACGTTATGATTA+TGG - chr3_4:60390952-60390971 None:intergenic 20.0%
!! AATGAAGAATGCTATTAAAA+AGG + chr3_4:60391087-60391106 Msa0511070:CDS 20.0%
!! CAATTCACGTAAAAAATTTA+TGG - chr3_4:60392978-60392997 None:intergenic 20.0%
! CAAAACCATATTTGAAGATA+AGG - chr3_4:60387214-60387233 None:intergenic 25.0%
!!! GAATTTGGTTTTATAATGTG+AGG + chr3_4:60387233-60387252 Msa0511070:intron 25.0%
! TAAAACTAGAAATGGGTAAA+AGG - chr3_4:60387285-60387304 None:intergenic 25.0%
! GATTTAATAGACATTAGAGA+TGG - chr3_4:60387465-60387484 None:intergenic 25.0%
! TCATATTTAAAGAAAGTTGG+AGG + chr3_4:60387753-60387772 Msa0511070:intron 25.0%
!!! GTCCTTTATTTTTTTCTTTC+TGG + chr3_4:60388311-60388330 Msa0511070:intron 25.0%
! CACCAGAAAGAAAAAAATAA+AGG - chr3_4:60388316-60388335 None:intergenic 25.0%
! TATCTTTCTCTATGTTAACA+GGG + chr3_4:60388336-60388355 Msa0511070:intron 25.0%
!!! CTTATTTTCACCTATATTTC+TGG - chr3_4:60388453-60388472 None:intergenic 25.0%
! GGTGAAAATAAGAAGTTATA+TGG + chr3_4:60388461-60388480 Msa0511070:intron 25.0%
!! ATATTCATGCAACAAAGTTT+TGG - chr3_4:60388696-60388715 None:intergenic 25.0%
! GTAAAATGATGTGAGTATAA+TGG - chr3_4:60388838-60388857 None:intergenic 25.0%
! TGTTCAATAGTACTTATCTT+TGG - chr3_4:60388866-60388885 None:intergenic 25.0%
!!! TTTTTTCCTCATTGTTATCA+AGG - chr3_4:60389092-60389111 None:intergenic 25.0%
!! AATTATAGTGGAGGAAATAA+AGG - chr3_4:60389475-60389494 None:intergenic 25.0%
! AATAATAGGATCTTCAACAA+TGG - chr3_4:60389501-60389520 None:intergenic 25.0%
!!! CAAATGAAAGCATTTTGTTT+AGG - chr3_4:60389579-60389598 None:intergenic 25.0%
! AAACAAAATGCTTTCATTTG+TGG + chr3_4:60389579-60389598 Msa0511070:intron 25.0%
! ATAGAAACTGTATGTATATG+AGG + chr3_4:60389612-60389631 Msa0511070:intron 25.0%
! ATAGGATTAACTTATGACAA+TGG + chr3_4:60389686-60389705 Msa0511070:intron 25.0%
! TTGTTTGAACATATTTGAGA+TGG + chr3_4:60389835-60389854 Msa0511070:exon 25.0%
!! TACATATATTGATAACAAGG+AGG + chr3_4:60390142-60390161 Msa0511070:CDS 25.0%
!!! GAAATTTGAGTTTTCAAGTT+TGG + chr3_4:60390211-60390230 Msa0511070:CDS 25.0%
! GATGATTAAAAGCAATAAAG+GGG + chr3_4:60390298-60390317 Msa0511070:CDS 25.0%
! AATCATAACGTTATATTTGC+TGG + chr3_4:60390953-60390972 Msa0511070:CDS 25.0%
! AAAAAGAAGAAACTTATGTG+TGG + chr3_4:60390993-60391012 Msa0511070:CDS 25.0%
! AAAAGAAGAAACTTATGTGT+GGG + chr3_4:60390994-60391013 Msa0511070:CDS 25.0%
!!! TATTGCACTATTGGTTTTTT+TGG + chr3_4:60391792-60391811 Msa0511070:CDS 25.0%
!! TTATGTGAATCCCAAAATTT+TGG - chr3_4:60391904-60391923 None:intergenic 25.0%
! TGATGATTTCAATGATCATA+TGG + chr3_4:60391990-60392009 Msa0511070:CDS 25.0%
! TATCAAAGTATAGGCATTTA+AGG - chr3_4:60392509-60392528 None:intergenic 25.0%
! ATGCCTATACTTTGATATAT+AGG + chr3_4:60392512-60392531 Msa0511070:intron 25.0%
! TGCCTATACTTTGATATATA+GGG + chr3_4:60392513-60392532 Msa0511070:intron 25.0%
!!! TTTCTTTTGTTTCGGTTTTT+AGG + chr3_4:60392690-60392709 Msa0511070:intron 25.0%
TAAGGAAAAAGTAATCTCAC+CGG - chr3_4:60387196-60387215 None:intergenic 30.0%
!!! GTTTTAATTTCTGACCATGT+TGG + chr3_4:60387299-60387318 Msa0511070:intron 30.0%
AAGGCAAAAATGAACACAAA+AGG - chr3_4:60387358-60387377 None:intergenic 30.0%
!!! ATGGACAAATTTTTTTCCCA+AGG + chr3_4:60387524-60387543 Msa0511070:intron 30.0%
ACTATGTATTGCATCTTACA+TGG - chr3_4:60387681-60387700 None:intergenic 30.0%
!!! TTTTGGTTTTAGTTCAGCAA+TGG + chr3_4:60387721-60387740 Msa0511070:intron 30.0%
!!! TTTTAGTTCAGCAATGGAAA+GGG + chr3_4:60387727-60387746 Msa0511070:intron 30.0%
ATAGTCAATTCATCTCGTAA+AGG - chr3_4:60387786-60387805 None:intergenic 30.0%
! TGTATGGACATGATTTTTGT+GGG + chr3_4:60387883-60387902 Msa0511070:intron 30.0%
! ACAACTTCAATTTGAAGTGT+TGG + chr3_4:60388127-60388146 Msa0511070:intron 30.0%
GTATCTTTCTCTATGTTAAC+AGG + chr3_4:60388335-60388354 Msa0511070:intron 30.0%
TTAAATTCAAACTCTTGCAC+TGG + chr3_4:60388792-60388811 Msa0511070:intron 30.0%
TTTGCAAGAAAAAGAACAAG+AGG + chr3_4:60389048-60389067 Msa0511070:intron 30.0%
! AGAAAACCTTGATAACAATG+AGG + chr3_4:60389083-60389102 Msa0511070:intron 30.0%
AGGAAAAAAGACAGTAAACT+AGG + chr3_4:60389103-60389122 Msa0511070:intron 30.0%
CAACAATGGTGAAATTATAG+TGG - chr3_4:60389487-60389506 None:intergenic 30.0%
TATGGAAAGCGAGAAATAAT+AGG - chr3_4:60389515-60389534 None:intergenic 30.0%
!!! ATGAAAGCATTTTGTTTAGG+TGG - chr3_4:60389576-60389595 None:intergenic 30.0%
TCTATTGCCTACACATATTA+TGG - chr3_4:60389773-60389792 None:intergenic 30.0%
ATATGTGTAGGCAATAGAAA+AGG + chr3_4:60389775-60389794 Msa0511070:intron 30.0%
!!! TTTTGAAGCTTTGTTTGTTG+TGG + chr3_4:60390015-60390034 Msa0511070:intron 30.0%
!!! TGAGTTTTCAAGTTTGGATA+TGG + chr3_4:60390217-60390236 Msa0511070:CDS 30.0%
! TTTTAATCATCTTGCTCTTG+CGG - chr3_4:60390289-60390308 None:intergenic 30.0%
ACATCGAAAAATGAAAGAGT+CGG + chr3_4:60390547-60390566 Msa0511070:CDS 30.0%
AAAGAACTATAGAATCGAGA+CGG - chr3_4:60390614-60390633 None:intergenic 30.0%
CATAAACATTGTATTCCAAC+TGG - chr3_4:60390850-60390869 None:intergenic 30.0%
CAGTTGGAATACAATGTTTA+TGG + chr3_4:60390848-60390867 Msa0511070:CDS 30.0%
CACAATCTATGATAAGCATT+TGG - chr3_4:60391118-60391137 None:intergenic 30.0%
ATTATGATCTTGGTGAGTTT+CGG + chr3_4:60391221-60391240 Msa0511070:CDS 30.0%
! ACTGAAATGGTTGATACATT+TGG + chr3_4:60391253-60391272 Msa0511070:CDS 30.0%
! CTGAAATGGTTGATACATTT+GGG + chr3_4:60391254-60391273 Msa0511070:CDS 30.0%
!! GCTGACTTTTCTTCTAATTA+CGG + chr3_4:60391496-60391515 Msa0511070:CDS 30.0%
! TGAAATCTTGTTTGTAGTAC+CGG - chr3_4:60391526-60391545 None:intergenic 30.0%
ACAAACAAGATTTCAAAGCA+TGG + chr3_4:60391531-60391550 Msa0511070:CDS 30.0%
TATTTCGTGATATTCTTGCA+CGG + chr3_4:60391596-60391615 Msa0511070:CDS 30.0%
! ATAAGCCTCTTCCAAAATTT+TGG + chr3_4:60391890-60391909 Msa0511070:CDS 30.0%
! TAAGCCTCTTCCAAAATTTT+GGG + chr3_4:60391891-60391910 Msa0511070:CDS 30.0%
TGTTCTACTTGTAGAGAATT+CGG + chr3_4:60392189-60392208 Msa0511070:CDS 30.0%
GACCCTATATATCAAAGTAT+AGG - chr3_4:60392518-60392537 None:intergenic 30.0%
TCAACAAATTCTCTGATGAT+TGG - chr3_4:60392760-60392779 None:intergenic 30.0%
!! TCATCAGAGAATTTGTTGAA+TGG + chr3_4:60392761-60392780 Msa0511070:CDS 30.0%
TTACCTATTATGTTGAGCTT+TGG + chr3_4:60392926-60392945 Msa0511070:three_prime_UTR 30.0%
TACGTGAATTGTTGCTAAAT+AGG + chr3_4:60392987-60393006 Msa0511070:three_prime_UTR 30.0%
TCTTTATGCTTGTCATCTAA+AGG + chr3_4:60393013-60393032 Msa0511070:three_prime_UTR 30.0%
TATTCGTGTTGAACAAAGTT+CGG - chr3_4:60393060-60393079 None:intergenic 30.0%
TTTGGAGAGGAAACTGATTA+TGG - chr3_4:60386848-60386867 None:intergenic 35.0%
!! CTAAGAGTGGTAACTGATTT+TGG - chr3_4:60386866-60386885 None:intergenic 35.0%
!!! TTCTGATTTTGACTGAAAGG+GGG - chr3_4:60386987-60387006 None:intergenic 35.0%
!!! CTTCTGATTTTGACTGAAAG+GGG - chr3_4:60386988-60387007 None:intergenic 35.0%
!!! CCTTCTGATTTTGACTGAAA+GGG - chr3_4:60386989-60387008 None:intergenic 35.0%
!!! ACCTTCTGATTTTGACTGAA+AGG - chr3_4:60386990-60387009 None:intergenic 35.0%
! TAAACCATTCACGGATTGTT+GGG - chr3_4:60387065-60387084 None:intergenic 35.0%
! TTAAACCATTCACGGATTGT+TGG - chr3_4:60387066-60387085 None:intergenic 35.0%
ACAGATTCTTAGCACAATTG+CGG - chr3_4:60387126-60387145 None:intergenic 35.0%
!! GTTCCATTTTTCTTTCTCGT+TGG + chr3_4:60387167-60387186 Msa0511070:five_prime_UTR 35.0%
!!! TTTCTGACCATGTTGGTTTT+TGG + chr3_4:60387306-60387325 Msa0511070:intron 35.0%
ACGAACCTAATCCAATGTAA+CGG - chr3_4:60387409-60387428 None:intergenic 35.0%
ACAAACATGAGTTGTAGTCA+TGG - chr3_4:60387551-60387570 None:intergenic 35.0%
! CATAGTGTTGTTGTTACTTG+TGG + chr3_4:60387695-60387714 Msa0511070:intron 35.0%
!!! GTTTTAGTTCAGCAATGGAA+AGG + chr3_4:60387726-60387745 Msa0511070:intron 35.0%
! CTGTATGGACATGATTTTTG+TGG + chr3_4:60387882-60387901 Msa0511070:intron 35.0%
! ATGATTTTTGTGGGACTTCA+AGG + chr3_4:60387892-60387911 Msa0511070:intron 35.0%
! TGATTTTTGTGGGACTTCAA+GGG + chr3_4:60387893-60387912 Msa0511070:intron 35.0%
AAATACCATCCACAAACCAT+TGG - chr3_4:60387958-60387977 None:intergenic 35.0%
!!! GTGTTCCTTTAGCTTTTTAG+AGG + chr3_4:60388255-60388274 Msa0511070:intron 35.0%
! CAACACCTCTAAAAAGCTAA+AGG - chr3_4:60388263-60388282 None:intergenic 35.0%
!!! CTTTAGCTTTTTAGAGGTGT+TGG + chr3_4:60388261-60388280 Msa0511070:intron 35.0%
CACTAAAGAGCCAGAAATAT+AGG + chr3_4:60388440-60388459 Msa0511070:intron 35.0%
ACAAAGTGCATTGTGATGTA+TGG - chr3_4:60388504-60388523 None:intergenic 35.0%
TGCATGAGTAACTTTCTGTT+GGG + chr3_4:60388617-60388636 Msa0511070:intron 35.0%
! GTTCTTTTTCTTGCAAACTG+TGG - chr3_4:60389045-60389064 None:intergenic 35.0%
!! TAAGAGTGTGGAGTTCTTTT+GGG - chr3_4:60389136-60389155 None:intergenic 35.0%
!! TTAAGAGTGTGGAGTTCTTT+TGG - chr3_4:60389137-60389156 None:intergenic 35.0%
GTGTTAGTAACTTAAGAGTG+TGG - chr3_4:60389148-60389167 None:intergenic 35.0%
!! GTGTTATTTATGTCTGTGTG+TGG - chr3_4:60389179-60389198 None:intergenic 35.0%
!!! CTTAGATTTTGGTGCTATCT+AGG - chr3_4:60389219-60389238 None:intergenic 35.0%
TCACCGCATAAAACATCTAA+CGG + chr3_4:60389255-60389274 Msa0511070:intron 35.0%
!!! TGTTTTTTAGGTGCTGTTTG+GGG - chr3_4:60389332-60389351 None:intergenic 35.0%
!!! GTGTTTTTTAGGTGCTGTTT+GGG - chr3_4:60389333-60389352 None:intergenic 35.0%
!!! TGTGTTTTTTAGGTGCTGTT+TGG - chr3_4:60389334-60389353 None:intergenic 35.0%
!!! TGCTTTTGGTGTTAAAAAGG+TGG - chr3_4:60389372-60389391 None:intergenic 35.0%
!!! GACTGCTTTTGGTGTTAAAA+AGG - chr3_4:60389375-60389394 None:intergenic 35.0%
AAATAAAGGTCGTATCTTGG+CGG - chr3_4:60389461-60389480 None:intergenic 35.0%
AGGAAATAAAGGTCGTATCT+TGG - chr3_4:60389464-60389483 None:intergenic 35.0%
CAATGGTGAAATTATAGTGG+AGG - chr3_4:60389484-60389503 None:intergenic 35.0%
AAATGCTTTCATTTGTGGAG+TGG + chr3_4:60389584-60389603 Msa0511070:intron 35.0%
AATGCTTTCATTTGTGGAGT+GGG + chr3_4:60389585-60389604 Msa0511070:intron 35.0%
ATGGATGCCATAATATGTGT+AGG + chr3_4:60389763-60389782 Msa0511070:intron 35.0%
TGTTGAAGAGAATATGCAGA+TGG + chr3_4:60389865-60389884 Msa0511070:CDS 35.0%
TCAAATTTCCTTGTCTCATG+GGG - chr3_4:60390200-60390219 None:intergenic 35.0%
CTCAAATTTCCTTGTCTCAT+GGG - chr3_4:60390201-60390220 None:intergenic 35.0%
ACTCAAATTTCCTTGTCTCA+TGG - chr3_4:60390202-60390221 None:intergenic 35.0%
TGGCTTATGAGTTCTATAAC+TGG + chr3_4:60390237-60390256 Msa0511070:CDS 35.0%
AACTGGTATGCTAGAATGAA+TGG + chr3_4:60390254-60390273 Msa0511070:CDS 35.0%
ACTGGTATGCTAGAATGAAT+GGG + chr3_4:60390255-60390274 Msa0511070:CDS 35.0%
GTGGATGTGAAGCAAAATTT+CGG + chr3_4:60390423-60390442 Msa0511070:CDS 35.0%
TGGATGTGAAGCAAAATTTC+GGG + chr3_4:60390424-60390443 Msa0511070:CDS 35.0%
TAGATATGTTCTCACAACGT+TGG + chr3_4:60390453-60390472 Msa0511070:CDS 35.0%
!! CTTTTAGGTGAAGAGTACAA+TGG + chr3_4:60390512-60390531 Msa0511070:CDS 35.0%
GTCTCGATTCTATAGTTCTT+TGG + chr3_4:60390613-60390632 Msa0511070:CDS 35.0%
AAAGATAGGGTTTCGAAAGA+AGG + chr3_4:60390658-60390677 Msa0511070:CDS 35.0%
!! GAAAGCAACGCCTTTTAAAA+CGG + chr3_4:60390699-60390718 Msa0511070:CDS 35.0%
!! TACCATCACACCGTTTTAAA+AGG - chr3_4:60390712-60390731 None:intergenic 35.0%
AATGCTCTACAATATCTTCG+TGG + chr3_4:60390734-60390753 Msa0511070:CDS 35.0%
ATGCTCTACAATATCTTCGT+GGG + chr3_4:60390735-60390754 Msa0511070:CDS 35.0%
! CAATGTTTATGGTGATGTGT+TGG + chr3_4:60390859-60390878 Msa0511070:CDS 35.0%
TTGGCATTTGATGCAACATA+TGG + chr3_4:60390878-60390897 Msa0511070:CDS 35.0%
CAAATATCATTGTCCCTTAG+TGG + chr3_4:60390907-60390926 Msa0511070:CDS 35.0%
! GTGGGTTCTTGAACAATTTT+TGG + chr3_4:60391012-60391031 Msa0511070:CDS 35.0%
!! CAATTTTTGGAAGCAATGTC+TGG + chr3_4:60391025-60391044 Msa0511070:CDS 35.0%
CCATCAGTAATGACAGATAT+AGG - chr3_4:60391058-60391077 None:intergenic 35.0%
CCTATATCTGTCATTACTGA+TGG + chr3_4:60391055-60391074 Msa0511070:CDS 35.0%
CTTATCATAGATTGTGTGCT+TGG + chr3_4:60391122-60391141 Msa0511070:CDS 35.0%
ATGTTGGGTGATTATGATCT+TGG + chr3_4:60391211-60391230 Msa0511070:CDS 35.0%
TGTATGCAAAGAGAAAGATG+TGG + chr3_4:60391305-60391324 Msa0511070:CDS 35.0%
GTATGCAAAGAGAAAGATGT+GGG + chr3_4:60391306-60391325 Msa0511070:CDS 35.0%
CCTTGAAACGCATGTAATTA+AGG - chr3_4:60391468-60391487 None:intergenic 35.0%
CCTTAATTACATGCGTTTCA+AGG + chr3_4:60391465-60391484 Msa0511070:CDS 35.0%
TAATTACATGCGTTTCAAGG+AGG + chr3_4:60391468-60391487 Msa0511070:CDS 35.0%
TTCTTCTAATTACGGTGATC+CGG + chr3_4:60391504-60391523 Msa0511070:CDS 35.0%
GTAAGTACCAAGCATCTAAA+CGG + chr3_4:60391680-60391699 Msa0511070:CDS 35.0%
TAAGTACCAAGCATCTAAAC+GGG + chr3_4:60391681-60391700 Msa0511070:CDS 35.0%
CGAGCATATTATTGCACTAT+TGG + chr3_4:60391783-60391802 Msa0511070:CDS 35.0%
!! GAATCCCAAAATTTTGGAAG+AGG - chr3_4:60391898-60391917 None:intergenic 35.0%
TTTCAATGATCATATGGAGC+AGG + chr3_4:60391996-60392015 Msa0511070:CDS 35.0%
TTCAGAAGATGGAAACAAAG+AGG + chr3_4:60392031-60392050 Msa0511070:CDS 35.0%
TCAGAAGATGGAAACAAAGA+GGG + chr3_4:60392032-60392051 Msa0511070:CDS 35.0%
AAAGTGACCATGAGATATTG+AGG + chr3_4:60392088-60392107 Msa0511070:CDS 35.0%
AAGTGACCATGAGATATTGA+GGG + chr3_4:60392089-60392108 Msa0511070:CDS 35.0%
TTGTTGTGATGATCTTCATG+TGG - chr3_4:60392270-60392289 None:intergenic 35.0%
! AACTGCAATTTTACCTCACA+AGG - chr3_4:60392457-60392476 None:intergenic 35.0%
ACATAGCAATTTGTAGCATC+AGG + chr3_4:60392598-60392617 Msa0511070:intron 35.0%
AGAGAATCACTTTGAATTGC+AGG - chr3_4:60392659-60392678 None:intergenic 35.0%
!!! TTTCGGTTTTTAGGTTGATG+AGG + chr3_4:60392699-60392718 Msa0511070:intron 35.0%
AGAAATAGCAACTAGAGAAG+AGG + chr3_4:60392803-60392822 Msa0511070:exon 35.0%
AGTCCAAAGCTCAACATAAT+AGG - chr3_4:60392932-60392951 None:intergenic 35.0%
!! AGTGGTAACTGATTTTGGAG+AGG - chr3_4:60386861-60386880 None:intergenic 40.0%
TGATGGTTTGAGTCTAAGAG+TGG - chr3_4:60386879-60386898 None:intergenic 40.0%
CCCTTTCAGTCAAAATCAGA+AGG + chr3_4:60386986-60387005 Msa0511070:five_prime_UTR 40.0%
! AAACCATTCACGGATTGTTG+GGG - chr3_4:60387064-60387083 None:intergenic 40.0%
GCAATTGTGCTAAGAATCTG+TGG + chr3_4:60387125-60387144 Msa0511070:five_prime_UTR 40.0%
ATTGTGCTAAGAATCTGTGG+CGG + chr3_4:60387128-60387147 Msa0511070:five_prime_UTR 40.0%
TGGCCAACGAGAAAGAAAAA+TGG - chr3_4:60387173-60387192 None:intergenic 40.0%
CAAGGAACCAAAAACCAACA+TGG - chr3_4:60387316-60387335 None:intergenic 40.0%
TTTGCTTCAGACCGTTACAT+TGG + chr3_4:60387395-60387414 Msa0511070:intron 40.0%
TCAGACCGTTACATTGGATT+AGG + chr3_4:60387401-60387420 Msa0511070:intron 40.0%
! CATTGGATTAGGTTCGTGAA+AGG + chr3_4:60387412-60387431 Msa0511070:intron 40.0%
!! CACTGTTCACGTTTGTTGTA+TGG + chr3_4:60387505-60387524 Msa0511070:intron 40.0%
!! GTTGTTACTTGTGGCTGTTT+TGG + chr3_4:60387704-60387723 Msa0511070:intron 40.0%
TTGATTGATTGAGCAGCCAA+TGG + chr3_4:60387939-60387958 Msa0511070:intron 40.0%
TGTTAACAGGGTGAATGCAT+TGG + chr3_4:60388348-60388367 Msa0511070:intron 40.0%
CTGAGATGAGTCTGTATATG+AGG - chr3_4:60388549-60388568 None:intergenic 40.0%
GTGCATGAGTAACTTTCTGT+TGG + chr3_4:60388616-60388635 Msa0511070:intron 40.0%
TTCTGTTGGGTCAAAGTTAG+AGG + chr3_4:60388630-60388649 Msa0511070:intron 40.0%
!! AATATCACTGACTCGTTGCA+TGG + chr3_4:60388711-60388730 Msa0511070:intron 40.0%
!! AAGAGTGTGGAGTTCTTTTG+GGG - chr3_4:60389135-60389154 None:intergenic 40.0%
!!! GATTTTGGTGCTATCTAGGT+GGG - chr3_4:60389215-60389234 None:intergenic 40.0%
!!! AGATTTTGGTGCTATCTAGG+TGG - chr3_4:60389216-60389235 None:intergenic 40.0%
! GGACTTAGAGGCTTAGATTT+TGG - chr3_4:60389230-60389249 None:intergenic 40.0%
! ATGTTTTATGCGGTGACAGT+AGG - chr3_4:60389251-60389270 None:intergenic 40.0%
! CTGCCGTTAGATGTTTTATG+CGG - chr3_4:60389261-60389280 None:intergenic 40.0%
TGTTTACATTTCAGGAGGTG+CGG - chr3_4:60389308-60389327 None:intergenic 40.0%
! TTTGGGGCTGTTTACATTTC+AGG - chr3_4:60389316-60389335 None:intergenic 40.0%
AGCACCTAAAAAACACAGAC+CGG + chr3_4:60389337-60389356 Msa0511070:intron 40.0%
TAACACCAAAAGCAGTCCTT+CGG + chr3_4:60389378-60389397 Msa0511070:intron 40.0%
GTTTGTTCTACGAATGGTGT+TGG - chr3_4:60389407-60389426 None:intergenic 40.0%
!! AAGCTTTGTTTGTTGTGGCA+GGG + chr3_4:60390020-60390039 Msa0511070:intron 40.0%
! TGCTAGAATGAATGGGTTTG+CGG + chr3_4:60390262-60390281 Msa0511070:CDS 40.0%
! AAGCTCATGGTTGTGTTGAT+CGG - chr3_4:60390495-60390514 None:intergenic 40.0%
! CAACACAACCATGAGCTTTT+AGG + chr3_4:60390497-60390516 Msa0511070:CDS 40.0%
ACTCTTCACCTAAAAGCTCA+TGG - chr3_4:60390508-60390527 None:intergenic 40.0%
ATGAACGACATGTTGAAGGT+TGG + chr3_4:60390581-60390600 Msa0511070:CDS 40.0%
TGAACGACATGTTGAAGGTT+GGG + chr3_4:60390582-60390601 Msa0511070:CDS 40.0%
ACATGTTGAAGGTTGGGATA+GGG + chr3_4:60390588-60390607 Msa0511070:CDS 40.0%
AGTTCTTTGGCAAACCAATC+AGG + chr3_4:60390626-60390645 Msa0511070:CDS 40.0%
! TCTTTTCATACCCTCCTGAT+TGG - chr3_4:60390643-60390662 None:intergenic 40.0%
! TCAGGAGGGTATGAAAAGAT+AGG + chr3_4:60390644-60390663 Msa0511070:CDS 40.0%
! CAGGAGGGTATGAAAAGATA+GGG + chr3_4:60390645-60390664 Msa0511070:CDS 40.0%
TAATACCGTCACACCAAAAC+AGG - chr3_4:60390826-60390845 None:intergenic 40.0%
GTTGGAATTCCTGAGTTTGT+GGG + chr3_4:60391172-60391191 Msa0511070:CDS 40.0%
!!! ATACGCGGCAATTTTTTTGC+TGG + chr3_4:60391340-60391359 Msa0511070:CDS 40.0%
!!! TACGCGGCAATTTTTTTGCT+GGG + chr3_4:60391341-60391360 Msa0511070:CDS 40.0%
TGAGGGGTTACATTCAGAAA+TGG + chr3_4:60391384-60391403 Msa0511070:CDS 40.0%
GAGGGGTTACATTCAGAAAT+GGG + chr3_4:60391385-60391404 Msa0511070:CDS 40.0%
AGGGGTTACATTCAGAAATG+GGG + chr3_4:60391386-60391405 Msa0511070:CDS 40.0%
CACTTGAACACATCATCATC+TGG - chr3_4:60391727-60391746 None:intergenic 40.0%
CAAGTGTTCTTGCAAGAAGA+TGG + chr3_4:60391741-60391760 Msa0511070:CDS 40.0%
TGCAAGAAGATGGAGTCATT+TGG + chr3_4:60391751-60391770 Msa0511070:CDS 40.0%
GTGCAATAATATGCTCGCAT+GGG - chr3_4:60391780-60391799 None:intergenic 40.0%
AGTGCAATAATATGCTCGCA+TGG - chr3_4:60391781-60391800 None:intergenic 40.0%
AGCAAATTAGCAAGTGAGAG+TGG + chr3_4:60391967-60391986 Msa0511070:CDS 40.0%
TGCTGCTGATATTCAGAAGA+TGG + chr3_4:60392020-60392039 Msa0511070:CDS 40.0%
CAGAAGATGGAAACAAAGAG+GGG + chr3_4:60392033-60392052 Msa0511070:CDS 40.0%
ACAAAGAGGGGTTTACATGA+TGG + chr3_4:60392045-60392064 Msa0511070:CDS 40.0%
!! GTCACTTTGACTTGAATCAG+TGG - chr3_4:60392076-60392095 None:intergenic 40.0%
GCACATCCTTTACTTCTTAC+CGG - chr3_4:60392123-60392142 None:intergenic 40.0%
! CTTTAGCTTCGTCACTTACT+CGG + chr3_4:60392145-60392164 Msa0511070:CDS 40.0%
TTAGCATGATGTCGACGTAT+TGG - chr3_4:60392234-60392253 None:intergenic 40.0%
!! CTGATGATTGGTCTCTTGAA+AGG - chr3_4:60392748-60392767 None:intergenic 40.0%
TGACTGAAAGGGGGAAATTG+CGG - chr3_4:60386978-60386997 None:intergenic 45.0%
! TTTTCTTTCTCGTTGGCCAC+CGG + chr3_4:60387174-60387193 Msa0511070:five_prime_UTR 45.0%
GGAAAAAGTAATCTCACCGG+TGG - chr3_4:60387193-60387212 None:intergenic 45.0%
GAGAGATCGAGCACGAAATT+GGG + chr3_4:60387256-60387275 Msa0511070:intron 45.0%
GAGTTGTAGTCATGGACCTT+GGG - chr3_4:60387543-60387562 None:intergenic 45.0%
TGAGTTGTAGTCATGGACCT+TGG - chr3_4:60387544-60387563 None:intergenic 45.0%
ACACACACACACACACTGTA+TGG + chr3_4:60387867-60387886 Msa0511070:intron 45.0%
ATTGAGCAGCCAATGGTTTG+TGG + chr3_4:60387946-60387965 Msa0511070:intron 45.0%
CAGAATCATGTCCTTCGCAT+GGG + chr3_4:60388210-60388229 Msa0511070:intron 45.0%
! TCCTTCGCATGGGAGTTTTT+CGG + chr3_4:60388220-60388239 Msa0511070:intron 45.0%
TGTTGGGTCAAAGTTAGAGG+AGG + chr3_4:60388633-60388652 Msa0511070:intron 45.0%
! GTTTACATTTCAGGAGGTGC+GGG - chr3_4:60389307-60389326 None:intergenic 45.0%
!!! CAAGCCGGTCTGTGTTTTTT+AGG - chr3_4:60389344-60389363 None:intergenic 45.0%
AAAAAGGTGGAGACACAAGC+CGG - chr3_4:60389359-60389378 None:intergenic 45.0%
GGATGAATCTGTTGCATCTG+TGG + chr3_4:60389886-60389905 Msa0511070:CDS 45.0%
TGAATCTGTTGCATCTGTGG+AGG + chr3_4:60389889-60389908 Msa0511070:CDS 45.0%
!! GAAGCTTTGTTTGTTGTGGC+AGG + chr3_4:60390019-60390038 Msa0511070:intron 45.0%
GACTAGAAGGCTTGTCAGAT+GGG + chr3_4:60390042-60390061 Msa0511070:CDS 45.0%
ACTAGAAGGCTTGTCAGATG+GGG + chr3_4:60390043-60390062 Msa0511070:CDS 45.0%
CAAGGAGGATATTCTTCGCA+TGG + chr3_4:60390157-60390176 Msa0511070:CDS 45.0%
TATTCTTCGCATGGACCTGA+AGG + chr3_4:60390166-60390185 Msa0511070:CDS 45.0%
ATTCTTCGCATGGACCTGAA+GGG + chr3_4:60390167-60390186 Msa0511070:CDS 45.0%
ACCTTTGTCTGCCATAGACA+AGG + chr3_4:60390335-60390354 Msa0511070:CDS 45.0%
CCTTTGTCTGCCATAGACAA+GGG + chr3_4:60390336-60390355 Msa0511070:CDS 45.0%
TCTGCCATAGACAAGGGTTT+AGG + chr3_4:60390342-60390361 Msa0511070:CDS 45.0%
CTGCCATAGACAAGGGTTTA+GGG + chr3_4:60390343-60390362 Msa0511070:CDS 45.0%
GCAGATGAACGACATGTTGA+AGG + chr3_4:60390577-60390596 Msa0511070:CDS 45.0%
GACATGTTGAAGGTTGGGAT+AGG + chr3_4:60390587-60390606 Msa0511070:CDS 45.0%
TCTTTGGCAAACCAATCAGG+AGG + chr3_4:60390629-60390648 Msa0511070:CDS 45.0%
CTTTGGCAAACCAATCAGGA+GGG + chr3_4:60390630-60390649 Msa0511070:CDS 45.0%
!!! CGCCTTTTAAAACGGTGTGA+TGG + chr3_4:60390707-60390726 Msa0511070:CDS 45.0%
TCTACAATATCTTCGTGGGC+TGG + chr3_4:60390739-60390758 Msa0511070:CDS 45.0%
! TTTTATCGCCACACCGTTGA+TGG + chr3_4:60390782-60390801 Msa0511070:CDS 45.0%
!!! GAACACCTGTTTTGGTGTGA+CGG + chr3_4:60390818-60390837 Msa0511070:CDS 45.0%
! TGTCCCTTAGTGGTGTTTTC+TGG + chr3_4:60390917-60390936 Msa0511070:CDS 45.0%
ACGCCAGAAAACACCACTAA+GGG - chr3_4:60390923-60390942 None:intergenic 45.0%
AACGCCAGAAAACACCACTA+AGG - chr3_4:60390924-60390943 None:intergenic 45.0%
CGTTGGAATTCCTGAGTTTG+TGG + chr3_4:60391171-60391190 Msa0511070:CDS 45.0%
GAATTCCTGAGTTTGTGGGT+CGG + chr3_4:60391176-60391195 Msa0511070:CDS 45.0%
TCGGTTCAGGATATGCATGT+TGG + chr3_4:60391195-60391214 Msa0511070:CDS 45.0%
CGGTTCAGGATATGCATGTT+GGG + chr3_4:60391196-60391215 Msa0511070:CDS 45.0%
! TTGGGTTGCATGACAACAAG+TGG + chr3_4:60391272-60391291 Msa0511070:CDS 45.0%
TGGGTTGCATGACAACAAGT+GGG + chr3_4:60391273-60391292 Msa0511070:CDS 45.0%
CAATAATATGCTCGCATGGG+AGG - chr3_4:60391777-60391796 None:intergenic 45.0%
TTCGCATTCTTTGTCCACCT+AGG - chr3_4:60391850-60391869 None:intergenic 45.0%
TAGGTGGACAAAGAATGCGA+AGG + chr3_4:60391849-60391868 Msa0511070:CDS 45.0%
AAGAGGGGTTTACATGATGG+CGG + chr3_4:60392048-60392067 Msa0511070:CDS 45.0%
CAGGATCCCTCAATATCTCA+TGG - chr3_4:60392098-60392117 None:intergenic 45.0%
CGTCACTTACTCGGAAGAAA+AGG + chr3_4:60392154-60392173 Msa0511070:CDS 45.0%
GGAAGAAAAGGAAGCGAACT+CGG + chr3_4:60392166-60392185 Msa0511070:CDS 45.0%
CAGTGACAACTCTGTAAGCA+AGG + chr3_4:60392296-60392315 Msa0511070:CDS 45.0%
GAAAAGTGATGCACCTTGTG+AGG + chr3_4:60392441-60392460 Msa0511070:intron 45.0%
ACTTTGAATTGCAGGCGATG+TGG - chr3_4:60392651-60392670 None:intergenic 45.0%
TGGCAGTTTCTCAAAGTCAC+AGG - chr3_4:60392958-60392977 None:intergenic 45.0%
CTACCCCAACAATCCGTGAA+TGG + chr3_4:60387058-60387077 Msa0511070:five_prime_UTR 50.0%
! GCTAAGAATCTGTGGCGGAA+AGG + chr3_4:60387133-60387152 Msa0511070:five_prime_UTR 50.0%
GGAGAGATCGAGCACGAAAT+TGG + chr3_4:60387255-60387274 Msa0511070:intron 50.0%
! AGCAGCCAATGGTTTGTGGA+TGG + chr3_4:60387950-60387969 Msa0511070:intron 50.0%
!! AGTGTCGACATCGACACACA+TGG - chr3_4:60388086-60388105 None:intergenic 50.0%
GCAGAATCATGTCCTTCGCA+TGG + chr3_4:60388209-60388228 Msa0511070:intron 50.0%
! CCTTCGCATGGGAGTTTTTC+GGG + chr3_4:60388221-60388240 Msa0511070:intron 50.0%
! CTGACTCGTTGCATGGCTAA+TGG + chr3_4:60388718-60388737 Msa0511070:intron 50.0%
GAGGGAGGTAGTAATTGTGG+AGG - chr3_4:60389285-60389304 None:intergenic 50.0%
GGGGCTGTTTACATTTCAGG+AGG - chr3_4:60389313-60389332 None:intergenic 50.0%
! GGAATCCGAAGGACTGCTTT+TGG - chr3_4:60389386-60389405 None:intergenic 50.0%
! CGAATGGTGTTGGAATCCGA+AGG - chr3_4:60389397-60389416 None:intergenic 50.0%
AGGCGCGTTTGTTCTACGAA+TGG - chr3_4:60389413-60389432 None:intergenic 50.0%
TCTAACTCGGCTGAAGACTC+AGG - chr3_4:60389433-60389452 None:intergenic 50.0%
AAAGGTCGTATCTTGGCGGT+GGG - chr3_4:60389457-60389476 None:intergenic 50.0%
TAAAGGTCGTATCTTGGCGG+TGG - chr3_4:60389458-60389477 None:intergenic 50.0%
TTGTTGTGGCAGGGACTAGA+AGG + chr3_4:60390029-60390048 Msa0511070:intron 50.0%
GGACTAGAAGGCTTGTCAGA+TGG + chr3_4:60390041-60390060 Msa0511070:CDS 50.0%
GAGACTGTTGACGATGATGC+CGG + chr3_4:60390086-60390105 Msa0511070:CDS 50.0%
GATCAAGTCCCCATGAGACA+AGG + chr3_4:60390189-60390208 Msa0511070:CDS 50.0%
CCCTTGTCTATGGCAGACAA+AGG - chr3_4:60390339-60390358 None:intergenic 50.0%
CCTCCCTAAACCCTTGTCTA+TGG - chr3_4:60390349-60390368 None:intergenic 50.0%
CCATAGACAAGGGTTTAGGG+AGG + chr3_4:60390346-60390365 Msa0511070:CDS 50.0%
CAAGGGTTTAGGGAGGATAG+AGG + chr3_4:60390353-60390372 Msa0511070:CDS 50.0%
CGGGTTTACACTCACGCTTA+CGG - chr3_4:60390394-60390413 None:intergenic 50.0%
GTGAGTGTAAACCCGAGACT+CGG + chr3_4:60390399-60390418 Msa0511070:CDS 50.0%
TTCACATCCACACCGAGTCT+CGG - chr3_4:60390414-60390433 None:intergenic 50.0%
TACCTTCTCCATCAACGGTG+TGG - chr3_4:60390793-60390812 None:intergenic 50.0%
GTGTGACGGTATTAGCCAGT+TGG + chr3_4:60390832-60390851 Msa0511070:CDS 50.0%
TGAATGTAACCCCTCAACCC+GGG - chr3_4:60391380-60391399 None:intergenic 50.0%
CTGAATGTAACCCCTCAACC+CGG - chr3_4:60391381-60391400 None:intergenic 50.0%
TCTTGCACGGTCTGCAGATA+TGG + chr3_4:60391609-60391628 Msa0511070:CDS 50.0%
ACCAAGCATCTAAACGGGAG+TGG + chr3_4:60391686-60391705 Msa0511070:CDS 50.0%
TCCACTCCCGTTTAGATGCT+TGG - chr3_4:60391690-60391709 None:intergenic 50.0%
TGCAGAATTGCCGAAGACTC+TGG + chr3_4:60391819-60391838 Msa0511070:CDS 50.0%
AGAATTGCCGAAGACTCTGG+TGG + chr3_4:60391822-60391841 Msa0511070:CDS 50.0%
GATATTGAGGGATCCTGCTC+CGG + chr3_4:60392101-60392120 Msa0511070:CDS 50.0%
CCTTTACTTCTTACCGGAGC+AGG - chr3_4:60392117-60392136 None:intergenic 50.0%
CCTGCTCCGGTAAGAAGTAA+AGG + chr3_4:60392114-60392133 Msa0511070:CDS 50.0%
GGCATGCATGTGTGTCAACA+TGG + chr3_4:60392720-60392739 Msa0511070:CDS 50.0%
TGCGGCGTGAAGTGAAGTGA+GGG - chr3_4:60387108-60387127 None:intergenic 55.0%
TTGCGGCGTGAAGTGAAGTG+AGG - chr3_4:60387109-60387128 None:intergenic 55.0%
CCCGAAAAACTCCCATGCGA+AGG - chr3_4:60388224-60388243 None:intergenic 55.0%
!! CTATCTAGGTGGGCTAGTGG+TGG - chr3_4:60389205-60389224 None:intergenic 55.0%
!! GTGCTATCTAGGTGGGCTAG+TGG - chr3_4:60389208-60389227 None:intergenic 55.0%
GCGGTGACAGTAGGACTTAG+AGG - chr3_4:60389242-60389261 None:intergenic 55.0%
CGGGAGGGAGGTAGTAATTG+TGG - chr3_4:60389288-60389307 None:intergenic 55.0%
! ACATTTCAGGAGGTGCGGGA+GGG - chr3_4:60389303-60389322 None:intergenic 55.0%
! TACATTTCAGGAGGTGCGGG+AGG - chr3_4:60389304-60389323 None:intergenic 55.0%
AAGGTCGTATCTTGGCGGTG+GGG - chr3_4:60389456-60389475 None:intergenic 55.0%
CGATGATGCCGGTAGTGTTG+AGG + chr3_4:60390097-60390116 Msa0511070:CDS 55.0%
! ATGCCGGTAGTGTTGAGGCT+GGG + chr3_4:60390102-60390121 Msa0511070:CDS 55.0%
TTCCCCAGCCTCAACACTAC+CGG - chr3_4:60390108-60390127 None:intergenic 55.0%
CATGGGGACTTGATCCCTTC+AGG - chr3_4:60390184-60390203 None:intergenic 55.0%
!! TGTAAACCCGAGACTCGGTG+TGG + chr3_4:60390404-60390423 Msa0511070:CDS 55.0%
TCACATCCACACCGAGTCTC+GGG - chr3_4:60390413-60390432 None:intergenic 55.0%
CGCAACGCAGCATCTAACGT+TGG + chr3_4:60391154-60391173 Msa0511070:CDS 55.0%
CTGAACCGACCCACAAACTC+AGG - chr3_4:60391184-60391203 None:intergenic 55.0%
! CTGAGTTTGTGGGTCGGTTC+AGG + chr3_4:60391182-60391201 Msa0511070:CDS 55.0%
TTGGTGAGTTTCGGCGCAAG+TGG + chr3_4:60391230-60391249 Msa0511070:CDS 55.0%
!! TCGGCGCAAGTGGACTGAAA+TGG + chr3_4:60391240-60391259 Msa0511070:CDS 55.0%
ATTGCCGCGTATGTGTGCTG+TGG - chr3_4:60391332-60391351 None:intergenic 55.0%
CTGGGTTCAGAACTACCTCC+CGG + chr3_4:60391359-60391378 Msa0511070:CDS 55.0%
TGGGTTCAGAACTACCTCCC+GGG + chr3_4:60391360-60391379 Msa0511070:CDS 55.0%
! AGAACTACCTCCCGGGTTGA+GGG + chr3_4:60391367-60391386 Msa0511070:CDS 55.0%
!! CAAAGCATGGAGCGTTGTGC+TGG + chr3_4:60391544-60391563 Msa0511070:CDS 55.0%
! CTAGGTGCCACCAGAGTCTT+CGG - chr3_4:60391832-60391851 None:intergenic 55.0%
CTTGGCGGTGGGGTCTAACT+CGG - chr3_4:60389446-60389465 None:intergenic 60.0%
! GATGCCGGTAGTGTTGAGGC+TGG + chr3_4:60390101-60390120 Msa0511070:CDS 60.0%
! TGCCGGTAGTGTTGAGGCTG+GGG + chr3_4:60390103-60390122 Msa0511070:CDS 60.0%
! GGTAGTGTTGAGGCTGGGGA+AGG + chr3_4:60390107-60390126 Msa0511070:CDS 60.0%
! CGCCACACCGTTGATGGAGA+AGG + chr3_4:60390788-60390807 Msa0511070:CDS 60.0%
TGGGCCACAGCACACATACG+CGG + chr3_4:60391325-60391344 Msa0511070:CDS 60.0%
CAGAACTACCTCCCGGGTTG+AGG + chr3_4:60391366-60391385 Msa0511070:CDS 60.0%
! GAACTACCTCCCGGGTTGAG+GGG + chr3_4:60391368-60391387 Msa0511070:CDS 60.0%
ATGTAACCCCTCAACCCGGG+AGG - chr3_4:60391377-60391396 None:intergenic 60.0%
CGAAGACTCTGGTGGCACCT+AGG + chr3_4:60391830-60391849 Msa0511070:CDS 60.0%
AGACTCTGGTGGCACCTAGG+TGG + chr3_4:60391833-60391852 Msa0511070:CDS 60.0%
! TTTCAGGAGGTGCGGGAGGG+AGG - chr3_4:60389300-60389319 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60386815 60393101 60386815 ID=Msa0511070;Name=Msa0511070
chr3_4 mRNA 60386815 60393101 60386815 ID=Msa0511070-mRNA-1;Parent=Msa0511070;Name=Msa0511070-mRNA-1;_AED=0.12;_eAED=0.12;_QI=450|0.66|0.75|1|0.66|0.5|4|297|808
chr3_4 exon 60386815 60387195 60386815 ID=Msa0511070-mRNA-1:exon:14452;Parent=Msa0511070-mRNA-1
chr3_4 exon 60389785 60389910 60389785 ID=Msa0511070-mRNA-1:exon:14453;Parent=Msa0511070-mRNA-1
chr3_4 exon 60390041 60392317 60390041 ID=Msa0511070-mRNA-1:exon:14454;Parent=Msa0511070-mRNA-1
chr3_4 exon 60392712 60393101 60392712 ID=Msa0511070-mRNA-1:exon:14455;Parent=Msa0511070-mRNA-1
chr3_4 five_prime_UTR 60386815 60387195 60386815 ID=Msa0511070-mRNA-1:five_prime_utr;Parent=Msa0511070-mRNA-1
chr3_4 five_prime_UTR 60389785 60389853 60389785 ID=Msa0511070-mRNA-1:five_prime_utr;Parent=Msa0511070-mRNA-1
chr3_4 CDS 60389854 60389910 60389854 ID=Msa0511070-mRNA-1:cds;Parent=Msa0511070-mRNA-1
chr3_4 CDS 60390041 60392317 60390041 ID=Msa0511070-mRNA-1:cds;Parent=Msa0511070-mRNA-1
chr3_4 CDS 60392712 60392804 60392712 ID=Msa0511070-mRNA-1:cds;Parent=Msa0511070-mRNA-1
chr3_4 three_prime_UTR 60392805 60393101 60392805 ID=Msa0511070-mRNA-1:three_prime_utr;Parent=Msa0511070-mRNA-1
Gene Sequence

>Msa0511070

ATGGAAAATAATGTTGAAGAGAATATGCAGATGGATGAATCTGTTGCATCTGTGGAGGGACTAGAAGGCTTGTCAGATGGGGTAAGTGATGAAGCAACATTTGAGACTGTTGACGATGATGCCGGTAGTGTTGAGGCTGGGGAAGGTACCGAAGAAATTACATATATTGATAACAAGGAGGATATTCTTCGCATGGACCTGAAGGGATCAAGTCCCCATGAGACAAGGAAATTTGAGTTTTCAAGTTTGGATATGGCTTATGAGTTCTATAACTGGTATGCTAGAATGAATGGGTTTGCGGTCCGCAAGAGCAAGATGATTAAAAGCAATAAAGGGGAACTATTACAGCAAACCTTTGTCTGCCATAGACAAGGGTTTAGGGAGGATAGAGGTTTAACAATAGAAAACCGTAAGCGTGAGTGTAAACCCGAGACTCGGTGTGGATGTGAAGCAAAATTTCGGGTGCATATAGATATGTTCTCACAACGTTGGTTGATAACTGTTTTTACCGATCAACACAACCATGAGCTTTTAGGTGAAGAGTACAATGGAATGCTTGCTGCACATCGAAAAATGAAAGAGTCGGATATAATGCAGATGAACGACATGTTGAAGGTTGGGATAGGGCCGTCTCGATTCTATAGTTCTTTGGCAAACCAATCAGGAGGGTATGAAAAGATAGGGTTTCGAAAGAAGGATATATATAATCAGATAGGAAAGCAACGCCTTTTAAAACGGTGTGATGGTAAAAATGCTCTACAATATCTTCGTGGGCTGGCATCAAATGACTCGATGATGTTTTATCGCCACACCGTTGATGGAGAAGGTAGACTTGAACACCTGTTTTGGTGTGACGGTATTAGCCAGTTGGAATACAATGTTTATGGTGATGTGTTGGCATTTGATGCAACATATGGAACAAACAAATATCATTGTCCCTTAGTGGTGTTTTCTGGCGTTAATAACCATAATCATAACGTTATATTTGCTGGTGCTATTGTTGCAAATGAAAAAGAAGAAACTTATGTGTGGGTTCTTGAACAATTTTTGGAAGCAATGTCTGGCAAATCGCCTATATCTGTCATTACTGATGGCGATCTTGCAATGAAGAATGCTATTAAAAAGGTGTTTCCAAATGCTTATCATAGATTGTGTGCTTGGCATCTAATTCGCAACGCAGCATCTAACGTTGGAATTCCTGAGTTTGTGGGTCGGTTCAGGATATGCATGTTGGGTGATTATGATCTTGGTGAGTTTCGGCGCAAGTGGACTGAAATGGTTGATACATTTGGGTTGCATGACAACAAGTGGGTTAAAGAGTTGTATGCAAAGAGAAAGATGTGGGCCACAGCACACATACGCGGCAATTTTTTTGCTGGGTTCAGAACTACCTCCCGGGTTGAGGGGTTACATTCAGAAATGGGGAAGTTTCTTGACTCGCGATATAATTTGACTGACTTTTTGCTACATTTTCATCGATGCCTTAATTACATGCGTTTCAAGGAGGTTGAAGCTGACTTTTCTTCTAATTACGGTGATCCGGTACTACAAACAAGATTTCAAAGCATGGAGCGTTGTGCTGGAAAGTTATTTACTCGAGAACTATTCTTAATATTTCGTGATATTCTTGCACGGTCTGCAGATATGGTCGTGACAGCATGCAATCAAACTTACACATGCTTCATATACACAGTTTGTAAGTACCAAGCATCTAAACGGGAGTGGAACATATCATTTTATCCAGATGATGATGTGTTCAAGTGTTCTTGCAAGAAGATGGAGTCATTTGGCCTCCCATGCGAGCATATTATTGCACTATTGGTTTTTTTGGATGTTGCAGAATTGCCGAAGACTCTGGTGGCACCTAGGTGGACAAAGAATGCGAAGGAAGCAGTATGTAGCACAAATAAGCCTCTTCCAAAATTTTGGGATTCACATAAGTCGTCTAGATATTCTGCTCTTTTGTTTCGATATATGCGTTTGAGCAAATTAGCAAGTGAGAGTGGTGATGATTTCAATGATCATATGGAGCAGGCTGCTGCTGATATTCAGAAGATGGAAACAAAGAGGGGTTTACATGATGGCGGAGCCACTGATTCAAGTCAAAGTGACCATGAGATATTGAGGGATCCTGCTCCGGTAAGAAGTAAAGGATGTGCTGCTTTAGCTTCGTCACTTACTCGGAAGAAAAGGAAGCGAACTCGGTGTTCTACTTGTAGAGAATTCGGACATAATAAACAAACGTGTCCAATACGTCGACATCATGCTAACACGACACATTCACCACATGAAGATCATCACAACAATGACTTCAGTGACAACTCTGTAAGCAAGGTTGATGAGGCATGCATGTGTGTCAACATGGATCCTTTCAAGAGACCAATCATCAGAGAATTTGTTGAATGGCTAAATAAAGAATGTTCATAG
Protein sequence

>Msa0511070

MENNVEENMQMDESVASVEGLEGLSDGVSDEATFETVDDDAGSVEAGEGTEEITYIDNKEDILRMDLKGSSPHETRKFEFSSLDMAYEFYNWYARMNGFAVRKSKMIKSNKGELLQQTFVCHRQGFREDRGLTIENRKRECKPETRCGCEAKFRVHIDMFSQRWLITVFTDQHNHELLGEEYNGMLAAHRKMKESDIMQMNDMLKVGIGPSRFYSSLANQSGGYEKIGFRKKDIYNQIGKQRLLKRCDGKNALQYLRGLASNDSMMFYRHTVDGEGRLEHLFWCDGISQLEYNVYGDVLAFDATYGTNKYHCPLVVFSGVNNHNHNVIFAGAIVANEKEETYVWVLEQFLEAMSGKSPISVITDGDLAMKNAIKKVFPNAYHRLCAWHLIRNAASNVGIPEFVGRFRICMLGDYDLGEFRRKWTEMVDTFGLHDNKWVKELYAKRKMWATAHIRGNFFAGFRTTSRVEGLHSEMGKFLDSRYNLTDFLLHFHRCLNYMRFKEVEADFSSNYGDPVLQTRFQSMERCAGKLFTRELFLIFRDILARSADMVVTACNQTYTCFIYTVCKYQASKREWNISFYPDDDVFKCSCKKMESFGLPCEHIIALLVFLDVAELPKTLVAPRWTKNAKEAVCSTNKPLPKFWDSHKSSRYSALLFRYMRLSKLASESGDDFNDHMEQAAADIQKMETKRGLHDGGATDSSQSDHEILRDPAPVRSKGCAALASSLTRKKRKRTRCSTCREFGHNKQTCPIRRHHANTTHSPHEDHHNNDFSDNSVSKVDEACMCVNMDPFKRPIIREFVEWLNKECS*