Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514560 | XP_003620884.1 | 64.516 | 465 | 147 | 8 | 1 | 457 | 1 | 455 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514560 | G7KJ84 | 64.516 | 465 | 147 | 8 | 1 | 457 | 1 | 455 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422090 | Msa0514560 | 0.953971 | 8.423341e-112 | -8.615850e-47 |
| Msa0468680 | Msa0514560 | 0.840607 | 7.852207e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514560 | MtrunA17_Chr6g0488101 | 64.516 | 465 | 147 | 8 | 1 | 457 | 1 | 455 | 0.0 | 573 |
| Msa0514560 | MtrunA17_Chr6g0488271 | 65.155 | 419 | 134 | 7 | 47 | 457 | 1 | 415 | 0.0 | 521 |
| Msa0514560 | MtrunA17_Chr3g0122991 | 78.816 | 321 | 14 | 3 | 107 | 419 | 1 | 275 | 1.21e-174 | 490 |
| Msa0514560 | MtrunA17_Chr3g0112311 | 68.451 | 355 | 103 | 4 | 108 | 455 | 3 | 355 | 1.04e-166 | 473 |
| Msa0514560 | MtrunA17_Chr4g0075971 | 55.150 | 466 | 175 | 11 | 7 | 457 | 156 | 602 | 1.18e-158 | 462 |
| Msa0514560 | MtrunA17_Chr3g0077901 | 60.615 | 358 | 131 | 6 | 104 | 456 | 19 | 371 | 5.40e-141 | 408 |
| Msa0514560 | MtrunA17_Chr6g0452641 | 66.990 | 309 | 92 | 4 | 157 | 457 | 34 | 340 | 5.90e-139 | 402 |
| Msa0514560 | MtrunA17_Chr3g0077801 | 59.599 | 349 | 129 | 7 | 111 | 453 | 6 | 348 | 3.48e-137 | 398 |
| Msa0514560 | MtrunA17_Chr3g0077851 | 60.294 | 340 | 125 | 6 | 122 | 456 | 1 | 335 | 4.45e-131 | 382 |
| Msa0514560 | MtrunA17_Chr7g0252101 | 50.000 | 456 | 174 | 17 | 17 | 457 | 16 | 432 | 6.00e-123 | 365 |
| Msa0514560 | MtrunA17_Chr1g0207351 | 56.111 | 360 | 135 | 10 | 111 | 457 | 17 | 366 | 1.14e-114 | 341 |
| Msa0514560 | MtrunA17_Chr7g0243331 | 53.541 | 353 | 152 | 7 | 110 | 457 | 5 | 350 | 6.67e-112 | 333 |
| Msa0514560 | MtrunA17_Chr3g0093911 | 54.670 | 364 | 135 | 11 | 108 | 457 | 3 | 350 | 8.63e-111 | 330 |
| Msa0514560 | MtrunA17_Chr3g0123471 | 65.660 | 265 | 85 | 4 | 186 | 450 | 1 | 259 | 8.97e-109 | 322 |
| Msa0514560 | MtrunA17_Chr1g0209051 | 55.036 | 278 | 110 | 6 | 186 | 456 | 1 | 270 | 1.92e-85 | 263 |
| Msa0514560 | MtrunA17_Chr4g0075861 | 51.073 | 233 | 91 | 6 | 1 | 222 | 150 | 370 | 1.35e-56 | 191 |
| Msa0514560 | MtrunA17_Chr7g0243391 | 52.358 | 212 | 91 | 4 | 108 | 311 | 16 | 225 | 2.07e-53 | 179 |
| Msa0514560 | MtrunA17_Chr6g0486591 | 59.627 | 161 | 56 | 5 | 304 | 457 | 1 | 159 | 5.20e-53 | 175 |
| Msa0514560 | MtrunA17_Chr1g0202841 | 51.397 | 179 | 77 | 5 | 283 | 457 | 7 | 179 | 7.42e-51 | 170 |
| Msa0514560 | MtrunA17_Chr1g0196231 | 56.954 | 151 | 58 | 4 | 98 | 245 | 218 | 364 | 4.77e-43 | 155 |
| Msa0514560 | MtrunA17_Chr6g0486601 | 66.038 | 106 | 34 | 2 | 1 | 104 | 1 | 106 | 2.61e-41 | 142 |
| Msa0514560 | MtrunA17_Chr1g0187941 | 53.788 | 132 | 56 | 2 | 283 | 411 | 7 | 136 | 5.47e-35 | 127 |
| Msa0514560 | MtrunA17_Chr1g0206951 | 58.559 | 111 | 44 | 2 | 111 | 219 | 4 | 114 | 1.70e-31 | 117 |
| Msa0514560 | MtrunA17_Chr7g0238781 | 44.030 | 134 | 72 | 3 | 138 | 270 | 27 | 158 | 1.02e-22 | 94.4 |
| Msa0514560 | MtrunA17_Chr6g0459061 | 25.559 | 313 | 224 | 6 | 114 | 423 | 18 | 324 | 1.13e-22 | 99.0 |
| Msa0514560 | MtrunA17_Chr1g0196241 | 59.459 | 74 | 29 | 1 | 350 | 422 | 1 | 74 | 2.67e-22 | 90.9 |
| Msa0514560 | MtrunA17_Chr1g0209191 | 48.515 | 101 | 44 | 3 | 361 | 456 | 1 | 98 | 3.72e-19 | 82.4 |
| Msa0514560 | MtrunA17_Chr1g0209061 | 36.154 | 130 | 47 | 4 | 17 | 145 | 13 | 107 | 5.44e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATATGTATTTAATTT+TGG | 0.076118 | 3_4:-65310163 | Msa0514560:CDS |
| TTAAATACATATGCCCTTTA+AGG | 0.116085 | 3_4:+65310169 | None:intergenic |
| ACCATCTTTCTTCTTGTAAA+TGG | 0.150870 | 3_4:+65308385 | None:intergenic |
| GGGCATTTCATAAAATTTAT+TGG | 0.268156 | 3_4:-65308606 | Msa0514560:CDS |
| TCTTGCACACACTACCAAAT+TGG | 0.280985 | 3_4:+65308635 | None:intergenic |
| TTATGTCAAGTTGGAATCTT+TGG | 0.282828 | 3_4:-65307948 | Msa0514560:CDS |
| GGGTTTCTCCATGAAGTAAA+AGG | 0.289430 | 3_4:-65310321 | Msa0514560:CDS |
| TTTGGACAAGTAATGGTTCT+TGG | 0.297479 | 3_4:+65308566 | None:intergenic |
| CACAAAATCAGAGTGTATAA+AGG | 0.303879 | 3_4:-65307818 | Msa0514560:CDS |
| TTTGATGACCTCTTCCAATT+TGG | 0.304325 | 3_4:-65308649 | Msa0514560:CDS |
| CAGAGAATTGTGAGCTTCCT+TGG | 0.308267 | 3_4:-65308705 | Msa0514560:CDS |
| TTCCAACTTGACATAATTCA+TGG | 0.322574 | 3_4:+65307955 | None:intergenic |
| GTCATCAAAATCTATCATTC+TGG | 0.330461 | 3_4:+65308663 | None:intergenic |
| CATTCTTAACACGGGACCTT+TGG | 0.330540 | 3_4:+65308548 | None:intergenic |
| CTCAGAGGAATTTGTCTTGG+TGG | 0.350287 | 3_4:-65308290 | Msa0514560:CDS |
| ACAGAAGGTGGAATTAATTC+TGG | 0.356713 | 3_4:+65307779 | None:intergenic |
| GAAGTAAAAGGCTTGTTTCA+TGG | 0.359706 | 3_4:-65310309 | Msa0514560:CDS |
| ACAAAATCAGAGTGTATAAA+GGG | 0.359913 | 3_4:-65307817 | Msa0514560:CDS |
| AATTTATTGGAGGAATTTCA+TGG | 0.361680 | 3_4:-65308593 | Msa0514560:CDS |
| CCAGTTCTAAAATCTGGAAC+CGG | 0.371531 | 3_4:-65310342 | Msa0514560:CDS |
| GTCTATCAATCTCGAAATCT+TGG | 0.381218 | 3_4:-65308238 | Msa0514560:CDS |
| CTTGTCAGTGATAACATATA+TGG | 0.392160 | 3_4:+65308159 | None:intergenic |
| TGATCATGATGGATTGGAAT+TGG | 0.396527 | 3_4:+65310102 | None:intergenic |
| TTTCATAACCCCACATGCTT+GGG | 0.397525 | 3_4:+65307873 | None:intergenic |
| AAGGCTTGTTTCATGGCAAA+AGG | 0.410150 | 3_4:-65310302 | Msa0514560:CDS |
| CTTTGTTTGAATTCTTGAAC+TGG | 0.411879 | 3_4:+65310204 | None:intergenic |
| ACACTTCCAGTTCTAAAATC+TGG | 0.417357 | 3_4:-65310348 | Msa0514560:CDS |
| TATGTCAAGTTGGAATCTTT+GGG | 0.417393 | 3_4:-65307947 | Msa0514560:CDS |
| AGGGTGAATGAGGTCCTTAA+AGG | 0.432093 | 3_4:-65310183 | Msa0514560:CDS |
| AGCGGATATTTGATCATGAC+AGG | 0.432124 | 3_4:-65308436 | Msa0514560:CDS |
| TCCATTTACAAGAAGAAAGA+TGG | 0.442051 | 3_4:-65308386 | Msa0514560:CDS |
| ACATGAGGCATTATCGAATC+AGG | 0.445618 | 3_4:-65310128 | Msa0514560:CDS |
| TTGGTGAGATAAGCTGATAA+AGG | 0.447533 | 3_4:+65308519 | None:intergenic |
| AGAGAATTGTGAGCTTCCTT+GGG | 0.456812 | 3_4:-65308704 | Msa0514560:CDS |
| CAAAGGTCCCGTGTTAAGAA+TGG | 0.463567 | 3_4:-65308547 | Msa0514560:CDS |
| ATCAATCTCGAAATCTTGGT+TGG | 0.466791 | 3_4:-65308234 | Msa0514560:CDS |
| GGAACAACCCTACTTGTACT+TGG | 0.481784 | 3_4:-65307732 | Msa0514560:CDS |
| CGGGACCTTTGGACAAGTAA+TGG | 0.484128 | 3_4:+65308559 | None:intergenic |
| TCAATCTCGAAATCTTGGTT+GGG | 0.489944 | 3_4:-65308233 | Msa0514560:CDS |
| ATGCTGATTATGCATATGTA+AGG | 0.493465 | 3_4:-65308060 | Msa0514560:CDS |
| GGGTGAATGAGGTCCTTAAA+GGG | 0.494064 | 3_4:-65310182 | Msa0514560:CDS |
| TACTTATTCAACACCACATA+GGG | 0.497231 | 3_4:-65308209 | Msa0514560:CDS |
| AACCATGAATTATGTCAAGT+TGG | 0.497832 | 3_4:-65307957 | Msa0514560:CDS |
| AGGCTTGTTTCATGGCAAAA+GGG | 0.501409 | 3_4:-65310301 | Msa0514560:CDS |
| AGTTCAAGAATTCAAACAAA+GGG | 0.501785 | 3_4:-65310202 | Msa0514560:CDS |
| GGTTGTTCCGAGTCGGATGT+TGG | 0.502946 | 3_4:+65307746 | None:intergenic |
| GACCTAGTTGTTGATCATGA+TGG | 0.505103 | 3_4:+65310091 | None:intergenic |
| GTACAGATTAAACATTATGT+TGG | 0.512395 | 3_4:+65307994 | None:intergenic |
| ATCACTGACAAGGCCAACAT+TGG | 0.512601 | 3_4:-65308148 | Msa0514560:CDS |
| CAGTTCTAAAATCTGGAACC+GGG | 0.514932 | 3_4:-65310341 | Msa0514560:CDS |
| TTTAAAGTTGATTACTCCTG+TGG | 0.517486 | 3_4:-65308346 | Msa0514560:CDS |
| AACCCTACTTGTACTTGGAC+TGG | 0.517501 | 3_4:-65307727 | Msa0514560:CDS |
| GACTCCATGTTCGTTTGCCA+TGG | 0.517527 | 3_4:+65310371 | None:intergenic |
| TTGGTAGTGTGTGCAAGAAT+CGG | 0.518154 | 3_4:-65308630 | Msa0514560:CDS |
| TCCGCTAGAAGACCCATGAT+AGG | 0.521743 | 3_4:+65308453 | None:intergenic |
| TAAGACATGGCAAGAACCAC+AGG | 0.524722 | 3_4:+65308330 | None:intergenic |
| AGTTGTTGATCATGATGGAT+TGG | 0.527383 | 3_4:+65310096 | None:intergenic |
| GCCTCCATGGCAAACGAACA+TGG | 0.527596 | 3_4:-65310375 | None:intergenic |
| AGGCTCAGAGGAATTTGTCT+TGG | 0.528013 | 3_4:-65308293 | Msa0514560:CDS |
| GCCTATCATGGGTCTTCTAG+CGG | 0.531172 | 3_4:-65308454 | Msa0514560:CDS |
| ATTCAAACAAAGGGTGAATG+AGG | 0.537107 | 3_4:-65310193 | Msa0514560:CDS |
| AAAAGTTTATCACTCAAAGA+TGG | 0.550583 | 3_4:-65308497 | Msa0514560:CDS |
| TGATTATGCATATGTAAGGT+TGG | 0.550918 | 3_4:-65308056 | Msa0514560:CDS |
| CATTTCATAAAATTTATTGG+AGG | 0.553532 | 3_4:-65308603 | Msa0514560:CDS |
| TTACTTATTCAACACCACAT+AGG | 0.554579 | 3_4:-65308210 | Msa0514560:CDS |
| CAAACTGAGTATCCCAATGT+TGG | 0.558277 | 3_4:+65308135 | None:intergenic |
| TCACTGACAAGGCCAACATT+GGG | 0.559813 | 3_4:-65308147 | Msa0514560:CDS |
| ACACCAGTCCAAGTACAAGT+AGG | 0.564649 | 3_4:+65307724 | None:intergenic |
| CAAGTAGGGTTGTTCCGAGT+CGG | 0.572575 | 3_4:+65307739 | None:intergenic |
| CACCAGTCCAAGTACAAGTA+GGG | 0.572999 | 3_4:+65307725 | None:intergenic |
| CATTGAACAACCCAAGCATG+TGG | 0.574764 | 3_4:-65307883 | Msa0514560:CDS |
| ACAAAATCAACAACCCTATG+TGG | 0.580187 | 3_4:+65308196 | None:intergenic |
| CAGTTCAAGAATTCAAACAA+AGG | 0.597402 | 3_4:-65310203 | Msa0514560:CDS |
| ATGATATCTAACAAATCCCA+AGG | 0.602002 | 3_4:+65308688 | None:intergenic |
| TGGGATTCAACGACTACATG+AGG | 0.603464 | 3_4:-65310143 | Msa0514560:CDS |
| TAGTGTGTGCAAGAATCGGC+GGG | 0.604446 | 3_4:-65308626 | Msa0514560:CDS |
| AAGAACCATTACTTGTCCAA+AGG | 0.610806 | 3_4:-65308564 | Msa0514560:CDS |
| CAACAACTAGGTCATAAGAC+TGG | 0.619673 | 3_4:-65310081 | Msa0514560:intron |
| TTGAACAACCCAAGCATGTG+GGG | 0.628995 | 3_4:-65307881 | Msa0514560:CDS |
| ATTGAACAACCCAAGCATGT+GGG | 0.631550 | 3_4:-65307882 | Msa0514560:CDS |
| ACACACTACCAAATTGGAAG+AGG | 0.631572 | 3_4:+65308641 | None:intergenic |
| GTTGGTTCGATAAGTACAGA+AGG | 0.637789 | 3_4:+65307764 | None:intergenic |
| TAATCAGCATAAGTTACACT+AGG | 0.639591 | 3_4:+65308073 | None:intergenic |
| CATATATGTTATCACTGACA+AGG | 0.643115 | 3_4:-65308158 | Msa0514560:CDS |
| TATCGAACCAACATCCGACT+CGG | 0.648262 | 3_4:-65307753 | Msa0514560:CDS |
| GTAGTGTGTGCAAGAATCGG+CGG | 0.650354 | 3_4:-65308627 | Msa0514560:CDS |
| GGTTCGATAAGTACAGAAGG+TGG | 0.650996 | 3_4:+65307767 | None:intergenic |
| CAAAATCAGAGTGTATAAAG+GGG | 0.656169 | 3_4:-65307816 | Msa0514560:CDS |
| ATCCATCATGATCAACAACT+AGG | 0.666444 | 3_4:-65310093 | Msa0514560:CDS |
| GCGGATATTTGATCATGACA+GGG | 0.702617 | 3_4:-65308435 | Msa0514560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTATAAATGGGTT+TGG | - | chr3_4:65308056-65308075 | Msa0514560:CDS | 15.0% |
| !! | TTGCACAAATATTTATATAA+AGG | + | chr3_4:65308275-65308294 | None:intergenic | 15.0% |
| !! | TTAAACCATTTAAAAAAAAC+AGG | + | chr3_4:65309239-65309258 | None:intergenic | 15.0% |
| !!! | TTTTTAAATGGTTTAATGTT+TGG | - | chr3_4:65309243-65309262 | Msa0514560:intron | 15.0% |
| !! | TAAAATTATCAACAAATGTG+AGG | + | chr3_4:65308034-65308053 | None:intergenic | 20.0% |
| !! | TGTGTTCATAACAAATAAAA+AGG | - | chr3_4:65308195-65308214 | Msa0514560:CDS | 20.0% |
| !! | TTCTTGTAAAAGTTATAAGA+AGG | + | chr3_4:65308333-65308352 | None:intergenic | 20.0% |
| !! | AAAATCATTAAAATCCAGTT+AGG | - | chr3_4:65308356-65308375 | Msa0514560:CDS | 20.0% |
| !!! | AATATCATAATTTGCATGTT+TGG | + | chr3_4:65308517-65308536 | None:intergenic | 20.0% |
| !!! | GAATTACATTGTTTAGTTTT+CGG | - | chr3_4:65308623-65308642 | Msa0514560:CDS | 20.0% |
| !!! | TTACTCCTGTTTTTTTTAAA+TGG | - | chr3_4:65309231-65309250 | Msa0514560:intron | 20.0% |
| !! | CATTTCATAAAATTTATTGG+AGG | - | chr3_4:65309448-65309467 | Msa0514560:intron | 20.0% |
| !!! | GATTTTGTGAATTACATTAT+TGG | + | chr3_4:65310222-65310241 | None:intergenic | 20.0% |
| ! | AGTTCAAGAATTCAAACAAA+GGG | - | chr3_4:65307849-65307868 | Msa0514560:CDS | 25.0% |
| ! | TTAAATACATATGCCCTTTA+AGG | + | chr3_4:65307885-65307904 | None:intergenic | 25.0% |
| !!! | AGGGCATATGTATTTAATTT+TGG | - | chr3_4:65307888-65307907 | Msa0514560:CDS | 25.0% |
| !!! | GGGCATATGTATTTAATTTT+GGG | - | chr3_4:65307889-65307908 | Msa0514560:CDS | 25.0% |
| ! | CTCAAATAGACAATTACAAA+CGG | + | chr3_4:65308111-65308130 | None:intergenic | 25.0% |
| ! | TGTAAAAGTTATAAGAAGGA+AGG | + | chr3_4:65308329-65308348 | None:intergenic | 25.0% |
| !!! | GACTCTATTTAGTTTGAATT+GGG | - | chr3_4:65308482-65308501 | Msa0514560:CDS | 25.0% |
| ! | CTATATTTACCTCTACAATT+AGG | - | chr3_4:65308565-65308584 | Msa0514560:CDS | 25.0% |
| !!! | TGGAGTTTTTAGTTTGTATT+GGG | + | chr3_4:65308827-65308846 | None:intergenic | 25.0% |
| !!! | ATGGAGTTTTTAGTTTGTAT+TGG | + | chr3_4:65308828-65308847 | None:intergenic | 25.0% |
| ! | TTTCCATTTGAGTATGAAAA+TGG | - | chr3_4:65309095-65309114 | Msa0514560:intron | 25.0% |
| ! | TTCCATTTGAGTATGAAAAT+GGG | - | chr3_4:65309096-65309115 | Msa0514560:intron | 25.0% |
| ! | GAAAATGGGTATTTATTGTT+TGG | - | chr3_4:65309110-65309129 | Msa0514560:intron | 25.0% |
| ! | ATACAAAGGGAAAAAAATGA+AGG | - | chr3_4:65309320-65309339 | Msa0514560:intron | 25.0% |
| ! | GGGCATTTCATAAAATTTAT+TGG | - | chr3_4:65309445-65309464 | Msa0514560:intron | 25.0% |
| ! | AATTTATTGGAGGAATTTCA+TGG | - | chr3_4:65309458-65309477 | Msa0514560:intron | 25.0% |
| !! | TCTTTGAGTGATAAACTTTT+TGG | + | chr3_4:65309554-65309573 | None:intergenic | 25.0% |
| ! | AAAAGTTTATCACTCAAAGA+TGG | - | chr3_4:65309554-65309573 | Msa0514560:intron | 25.0% |
| ! | GTACAGATTAAACATTATGT+TGG | + | chr3_4:65310060-65310079 | None:intergenic | 25.0% |
| ! | ACAAAATCAGAGTGTATAAA+GGG | - | chr3_4:65310234-65310253 | Msa0514560:CDS | 25.0% |
| ! | CTTTGTTTGAATTCTTGAAC+TGG | + | chr3_4:65307850-65307869 | None:intergenic | 30.0% |
| CAGTTCAAGAATTCAAACAA+AGG | - | chr3_4:65307848-65307867 | Msa0514560:CDS | 30.0% | |
| TAAAAACATGAAGTCTGAGT+AGG | + | chr3_4:65308231-65308250 | None:intergenic | 30.0% | |
| ! | TACTCAGACTTCATGTTTTT+AGG | - | chr3_4:65308230-65308249 | Msa0514560:CDS | 30.0% |
| ! | TGATGATTGCTGTTAAAACA+AGG | - | chr3_4:65308300-65308319 | Msa0514560:CDS | 30.0% |
| AATCTAACTGAATTCCTAAC+TGG | + | chr3_4:65308373-65308392 | None:intergenic | 30.0% | |
| TTAGTATTCCCCAACATTTA+TGG | - | chr3_4:65308401-65308420 | Msa0514560:CDS | 30.0% | |
| ACAACATCACCATAAATGTT+GGG | + | chr3_4:65308413-65308432 | None:intergenic | 30.0% | |
| AACAACATCACCATAAATGT+TGG | + | chr3_4:65308414-65308433 | None:intergenic | 30.0% | |
| TCAAACTAAATAGAGTCCTA+GGG | + | chr3_4:65308479-65308498 | None:intergenic | 30.0% | |
| TTCAAACTAAATAGAGTCCT+AGG | + | chr3_4:65308480-65308499 | None:intergenic | 30.0% | |
| !! | GGACTCTATTTAGTTTGAAT+TGG | - | chr3_4:65308481-65308500 | Msa0514560:CDS | 30.0% |
| TATGATATTGCCACTCTAAT+TGG | - | chr3_4:65308528-65308547 | Msa0514560:CDS | 30.0% | |
| GGTAAATATAGTTTACCTTG+TGG | + | chr3_4:65308556-65308575 | None:intergenic | 30.0% | |
| AACAAACATCCTAATTGTAG+AGG | + | chr3_4:65308577-65308596 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTGTTTCTGATTCA+TGG | + | chr3_4:65308741-65308760 | None:intergenic | 30.0% |
| ! | CAACTTTTATAGCTTTCGTA+GGG | + | chr3_4:65309029-65309048 | None:intergenic | 30.0% |
| GAAATTAACAATGTAGCATC+CGG | + | chr3_4:65309079-65309098 | None:intergenic | 30.0% | |
| ! | TACCCATTTTCATACTCAAA+TGG | + | chr3_4:65309101-65309120 | None:intergenic | 30.0% |
| CATAGTTATGTTGCTGTAAA+AGG | - | chr3_4:65309133-65309152 | Msa0514560:intron | 30.0% | |
| !! | TGTCATTTGTTGTGATACAA+AGG | - | chr3_4:65309306-65309325 | Msa0514560:intron | 30.0% |
| !! | GTCATTTGTTGTGATACAAA+GGG | - | chr3_4:65309307-65309326 | Msa0514560:intron | 30.0% |
| ATGATATCTAACAAATCCCA+AGG | + | chr3_4:65309366-65309385 | None:intergenic | 30.0% | |
| GTCATCAAAATCTATCATTC+TGG | + | chr3_4:65309391-65309410 | None:intergenic | 30.0% | |
| AGGAAAAACCATTCTTAACA+CGG | + | chr3_4:65309515-65309534 | None:intergenic | 30.0% | |
| TCCATTTACAAGAAGAAAGA+TGG | - | chr3_4:65309665-65309684 | Msa0514560:intron | 30.0% | |
| ACCATCTTTCTTCTTGTAAA+TGG | + | chr3_4:65309669-65309688 | None:intergenic | 30.0% | |
| ! | TTTAAAGTTGATTACTCCTG+TGG | - | chr3_4:65309705-65309724 | Msa0514560:intron | 30.0% |
| TGTAAAAAGCAAGTAAGACA+TGG | + | chr3_4:65309737-65309756 | None:intergenic | 30.0% | |
| TTACTTATTCAACACCACAT+AGG | - | chr3_4:65309841-65309860 | Msa0514560:intron | 30.0% | |
| TACTTATTCAACACCACATA+GGG | - | chr3_4:65309842-65309861 | Msa0514560:intron | 30.0% | |
| CTTGTCAGTGATAACATATA+TGG | + | chr3_4:65309895-65309914 | None:intergenic | 30.0% | |
| CATATATGTTATCACTGACA+AGG | - | chr3_4:65309893-65309912 | Msa0514560:intron | 30.0% | |
| TAATCAGCATAAGTTACACT+AGG | + | chr3_4:65309981-65310000 | None:intergenic | 30.0% | |
| ! | ATGCTGATTATGCATATGTA+AGG | - | chr3_4:65309991-65310010 | Msa0514560:intron | 30.0% |
| TGATTATGCATATGTAAGGT+TGG | - | chr3_4:65309995-65310014 | Msa0514560:intron | 30.0% | |
| AACCATGAATTATGTCAAGT+TGG | - | chr3_4:65310094-65310113 | Msa0514560:CDS | 30.0% | |
| TTCCAACTTGACATAATTCA+TGG | + | chr3_4:65310099-65310118 | None:intergenic | 30.0% | |
| !! | TTATGTCAAGTTGGAATCTT+TGG | - | chr3_4:65310103-65310122 | Msa0514560:CDS | 30.0% |
| !! | TATGTCAAGTTGGAATCTTT+GGG | - | chr3_4:65310104-65310123 | Msa0514560:CDS | 30.0% |
| CACAAAATCAGAGTGTATAA+AGG | - | chr3_4:65310233-65310252 | Msa0514560:CDS | 30.0% | |
| CAAAATCAGAGTGTATAAAG+GGG | - | chr3_4:65310235-65310254 | Msa0514560:CDS | 30.0% | |
| !! | ACACTTCCAGTTCTAAAATC+TGG | - | chr3_4:65307703-65307722 | Msa0514560:CDS | 35.0% |
| ! | TTTTACTTCATGGAGAAACC+CGG | + | chr3_4:65307731-65307750 | None:intergenic | 35.0% |
| ! | GAAACAAGCCTTTTACTTCA+TGG | + | chr3_4:65307741-65307760 | None:intergenic | 35.0% |
| ! | GAAGTAAAAGGCTTGTTTCA+TGG | - | chr3_4:65307742-65307761 | Msa0514560:CDS | 35.0% |
| ATTCAAACAAAGGGTGAATG+AGG | - | chr3_4:65307858-65307877 | Msa0514560:CDS | 35.0% | |
| !! | TGATCATGATGGATTGGAAT+TGG | + | chr3_4:65307952-65307971 | None:intergenic | 35.0% |
| !! | AGTTGTTGATCATGATGGAT+TGG | + | chr3_4:65307958-65307977 | None:intergenic | 35.0% |
| ATCCATCATGATCAACAACT+AGG | - | chr3_4:65307958-65307977 | Msa0514560:CDS | 35.0% | |
| !!! | CAGACTTCATGTTTTTAGGT+TGG | - | chr3_4:65308234-65308253 | Msa0514560:CDS | 35.0% |
| CAACATCACCATAAATGTTG+GGG | + | chr3_4:65308412-65308431 | None:intergenic | 35.0% | |
| ! | CATTTATGGTGATGTTGTTG+AGG | - | chr3_4:65308415-65308434 | Msa0514560:CDS | 35.0% |
| !!! | GGCTATTTGTTTTGGTGTAT+CGG | + | chr3_4:65308789-65308808 | None:intergenic | 35.0% |
| !!! | GTTTTGTTTCTGGTGTGTTT+TGG | + | chr3_4:65308880-65308899 | None:intergenic | 35.0% |
| !!! | CAGTATTCGTGTTTTGTTTC+TGG | + | chr3_4:65308890-65308909 | None:intergenic | 35.0% |
| ! | GCAACTTTTATAGCTTTCGT+AGG | + | chr3_4:65309030-65309049 | None:intergenic | 35.0% |
| TCACAACAAATGACAGTGTT+AGG | + | chr3_4:65309301-65309320 | None:intergenic | 35.0% | |
| ! | TTTGATGACCTCTTCCAATT+TGG | - | chr3_4:65309402-65309421 | Msa0514560:intron | 35.0% |
| TTTGGACAAGTAATGGTTCT+TGG | + | chr3_4:65309488-65309507 | None:intergenic | 35.0% | |
| AAGAACCATTACTTGTCCAA+AGG | - | chr3_4:65309487-65309506 | Msa0514560:intron | 35.0% | |
| GGAAAAACCATTCTTAACAC+GGG | + | chr3_4:65309514-65309533 | None:intergenic | 35.0% | |
| TTGGTGAGATAAGCTGATAA+AGG | + | chr3_4:65309535-65309554 | None:intergenic | 35.0% | |
| GGCAAAAATGACGAAGTTAT+TGG | + | chr3_4:65309580-65309599 | None:intergenic | 35.0% | |
| !!! | TTCGTCATTTTTGCCTATCA+TGG | - | chr3_4:65309585-65309604 | Msa0514560:intron | 35.0% |
| !!! | TCGTCATTTTTGCCTATCAT+GGG | - | chr3_4:65309586-65309605 | Msa0514560:intron | 35.0% |
| !!! | GTCTTACTTGCTTTTTACAG+AGG | - | chr3_4:65309738-65309757 | Msa0514560:intron | 35.0% |
| GTCTATCAATCTCGAAATCT+TGG | - | chr3_4:65309813-65309832 | Msa0514560:intron | 35.0% | |
| ATCAATCTCGAAATCTTGGT+TGG | - | chr3_4:65309817-65309836 | Msa0514560:intron | 35.0% | |
| TCAATCTCGAAATCTTGGTT+GGG | - | chr3_4:65309818-65309837 | Msa0514560:intron | 35.0% | |
| ACAAAATCAACAACCCTATG+TGG | + | chr3_4:65309858-65309877 | None:intergenic | 35.0% | |
| ACAGAAGGTGGAATTAATTC+TGG | + | chr3_4:65310275-65310294 | None:intergenic | 35.0% | |
| !! | CCAGTTCTAAAATCTGGAAC+CGG | - | chr3_4:65307709-65307728 | Msa0514560:CDS | 40.0% |
| !! | CAGTTCTAAAATCTGGAACC+GGG | - | chr3_4:65307710-65307729 | Msa0514560:CDS | 40.0% |
| GGGTTTCTCCATGAAGTAAA+AGG | - | chr3_4:65307730-65307749 | Msa0514560:CDS | 40.0% | |
| ! | AAGGCTTGTTTCATGGCAAA+AGG | - | chr3_4:65307749-65307768 | Msa0514560:CDS | 40.0% |
| ! | AGGCTTGTTTCATGGCAAAA+GGG | - | chr3_4:65307750-65307769 | Msa0514560:CDS | 40.0% |
| ! | ACATGAGGCATTATCGAATC+AGG | - | chr3_4:65307923-65307942 | Msa0514560:CDS | 40.0% |
| GACCTAGTTGTTGATCATGA+TGG | + | chr3_4:65307963-65307982 | None:intergenic | 40.0% | |
| CAACAACTAGGTCATAAGAC+TGG | - | chr3_4:65307970-65307989 | Msa0514560:CDS | 40.0% | |
| ACTAAATAGAGTCCTAGGGT+GGG | + | chr3_4:65308475-65308494 | None:intergenic | 40.0% | |
| AACTAAATAGAGTCCTAGGG+TGG | + | chr3_4:65308476-65308495 | None:intergenic | 40.0% | |
| ACAGATTACAACACCGACAA+AGG | - | chr3_4:65308761-65308780 | Msa0514560:intron | 40.0% | |
| TATTGGGTTATGCTTTGCCT+GGG | + | chr3_4:65308811-65308830 | None:intergenic | 40.0% | |
| ! | CTGTTCAGTGGTAGCAATTT+TGG | + | chr3_4:65308917-65308936 | None:intergenic | 40.0% |
| !!! | TGTGCTGATTTTCTGTTCAG+TGG | + | chr3_4:65308929-65308948 | None:intergenic | 40.0% |
| !!! | GCGTTTTTGTGTTACTTTGG+TGG | + | chr3_4:65308994-65309013 | None:intergenic | 40.0% |
| !!! | GGTGCGTTTTTGTGTTACTT+TGG | + | chr3_4:65308997-65309016 | None:intergenic | 40.0% |
| ! | GCTTTCGTAGGGATGTATTT+TGG | + | chr3_4:65309018-65309037 | None:intergenic | 40.0% |
| !!! | AGGTGTTTGCTGTGATTTTG+AGG | - | chr3_4:65309153-65309172 | Msa0514560:intron | 40.0% |
| !!! | TGTTTGCTGTGATTTTGAGG+TGG | - | chr3_4:65309156-65309175 | Msa0514560:intron | 40.0% |
| !!! | GTTTGCTGTGATTTTGAGGT+GGG | - | chr3_4:65309157-65309176 | Msa0514560:intron | 40.0% |
| ! | TTCTGTCTGTGATGGAGTAT+GGG | - | chr3_4:65309190-65309209 | Msa0514560:intron | 40.0% |
| AGAGAATTGTGAGCTTCCTT+GGG | - | chr3_4:65309347-65309366 | Msa0514560:intron | 40.0% | |
| ACACACTACCAAATTGGAAG+AGG | + | chr3_4:65309413-65309432 | None:intergenic | 40.0% | |
| TCTTGCACACACTACCAAAT+TGG | + | chr3_4:65309419-65309438 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGTGTGCAAGAAT+CGG | - | chr3_4:65309421-65309440 | Msa0514560:intron | 40.0% |
| AGCGGATATTTGATCATGAC+AGG | - | chr3_4:65309615-65309634 | Msa0514560:intron | 40.0% | |
| GCGGATATTTGATCATGACA+GGG | - | chr3_4:65309616-65309635 | Msa0514560:intron | 40.0% | |
| CAAACTGAGTATCCCAATGT+TGG | + | chr3_4:65309919-65309938 | None:intergenic | 40.0% | |
| ATTGAACAACCCAAGCATGT+GGG | - | chr3_4:65310169-65310188 | Msa0514560:CDS | 40.0% | |
| TTTCATAACCCCACATGCTT+GGG | + | chr3_4:65310181-65310200 | None:intergenic | 40.0% | |
| ! | TTTTCATAACCCCACATGCT+TGG | + | chr3_4:65310182-65310201 | None:intergenic | 40.0% |
| !! | GTTGGTTCGATAAGTACAGA+AGG | + | chr3_4:65310290-65310309 | None:intergenic | 40.0% |
| !!! | CCGGTTCCAGATTTTAGAAC+TGG | + | chr3_4:65307712-65307731 | None:intergenic | 45.0% |
| AGGGTGAATGAGGTCCTTAA+AGG | - | chr3_4:65307868-65307887 | Msa0514560:CDS | 45.0% | |
| GGGTGAATGAGGTCCTTAAA+GGG | - | chr3_4:65307869-65307888 | Msa0514560:CDS | 45.0% | |
| TGGGATTCAACGACTACATG+AGG | - | chr3_4:65307908-65307927 | Msa0514560:CDS | 45.0% | |
| !! | GTTGATGATGGCAAGGGTTT+AGG | + | chr3_4:65308452-65308471 | None:intergenic | 45.0% |
| CTAAATAGAGTCCTAGGGTG+GGG | + | chr3_4:65308474-65308493 | None:intergenic | 45.0% | |
| ATCCAAACACAACGCGAACT+CGG | - | chr3_4:65308669-65308688 | Msa0514560:CDS | 45.0% | |
| ! | AGCACGTGTTTTCGGATTTG+TGG | + | chr3_4:65308709-65308728 | None:intergenic | 45.0% |
| CAAATCCGAAAACACGTGCT+AGG | - | chr3_4:65308709-65308728 | Msa0514560:CDS | 45.0% | |
| ! | TGCTACCTAGCACGTGTTTT+CGG | + | chr3_4:65308717-65308736 | None:intergenic | 45.0% |
| !! | TGGTGTATCGGTTCCTTTGT+CGG | + | chr3_4:65308777-65308796 | None:intergenic | 45.0% |
| ACACCAAAACAAATAGCCCC+AGG | - | chr3_4:65308791-65308810 | Msa0514560:intron | 45.0% | |
| ! | TTGCCTGGGGCTATTTGTTT+TGG | + | chr3_4:65308797-65308816 | None:intergenic | 45.0% |
| ATTGGGTTATGCTTTGCCTG+GGG | + | chr3_4:65308810-65308829 | None:intergenic | 45.0% | |
| GTATTGGGTTATGCTTTGCC+TGG | + | chr3_4:65308812-65308831 | None:intergenic | 45.0% | |
| GGTTCATCTTAGCACTCTGA+TGG | + | chr3_4:65308847-65308866 | None:intergenic | 45.0% | |
| !!! | TGTTTCTGGTGTGTTTTGGC+TGG | + | chr3_4:65308876-65308895 | None:intergenic | 45.0% |
| TGCCTAAACCAGAATTGCAC+CGG | - | chr3_4:65309057-65309076 | Msa0514560:intron | 45.0% | |
| !! | ATCCGGTGCAATTCTGGTTT+AGG | + | chr3_4:65309062-65309081 | None:intergenic | 45.0% |
| ! | GTTCTGTCTGTGATGGAGTA+TGG | - | chr3_4:65309189-65309208 | Msa0514560:intron | 45.0% |
| ! | TCTGTCTGTGATGGAGTATG+GGG | - | chr3_4:65309191-65309210 | Msa0514560:intron | 45.0% |
| !! | TGTGATGGAGTATGGGGTTT+TGG | - | chr3_4:65309197-65309216 | Msa0514560:intron | 45.0% |
| CAGAGAATTGTGAGCTTCCT+TGG | - | chr3_4:65309346-65309365 | Msa0514560:intron | 45.0% | |
| CATTCTTAACACGGGACCTT+TGG | + | chr3_4:65309506-65309525 | None:intergenic | 45.0% | |
| CAAAGGTCCCGTGTTAAGAA+TGG | - | chr3_4:65309504-65309523 | Msa0514560:intron | 45.0% | |
| TAAGACATGGCAAGAACCAC+AGG | + | chr3_4:65309724-65309743 | None:intergenic | 45.0% | |
| !! | TGCTTTTTACAGAGGCTCAG+AGG | - | chr3_4:65309746-65309765 | Msa0514560:intron | 45.0% |
| AGGCTCAGAGGAATTTGTCT+TGG | - | chr3_4:65309758-65309777 | Msa0514560:intron | 45.0% | |
| CTCAGAGGAATTTGTCTTGG+TGG | - | chr3_4:65309761-65309780 | Msa0514560:intron | 45.0% | |
| ATCACTGACAAGGCCAACAT+TGG | - | chr3_4:65309903-65309922 | Msa0514560:intron | 45.0% | |
| TCACTGACAAGGCCAACATT+GGG | - | chr3_4:65309904-65309923 | Msa0514560:intron | 45.0% | |
| CATTGAACAACCCAAGCATG+TGG | - | chr3_4:65310168-65310187 | Msa0514560:CDS | 45.0% | |
| TTGAACAACCCAAGCATGTG+GGG | - | chr3_4:65310170-65310189 | Msa0514560:CDS | 45.0% | |
| GGTTCGATAAGTACAGAAGG+TGG | + | chr3_4:65310287-65310306 | None:intergenic | 45.0% | |
| TATCGAACCAACATCCGACT+CGG | - | chr3_4:65310298-65310317 | Msa0514560:CDS | 45.0% | |
| GGAACAACCCTACTTGTACT+TGG | - | chr3_4:65310319-65310338 | Msa0514560:CDS | 45.0% | |
| AACCCTACTTGTACTTGGAC+TGG | - | chr3_4:65310324-65310343 | Msa0514560:CDS | 45.0% | |
| CACCAGTCCAAGTACAAGTA+GGG | + | chr3_4:65310329-65310348 | None:intergenic | 45.0% | |
| ACACCAGTCCAAGTACAAGT+AGG | + | chr3_4:65310330-65310349 | None:intergenic | 45.0% | |
| !!! | TTTACTATATATTTTATAAA+TGG | - | chr3_4:65308050-65308069 | Msa0514560:CDS | 5.0% |
| !!! | TTACTATATATTTTATAAAT+GGG | - | chr3_4:65308051-65308070 | Msa0514560:CDS | 5.0% |
| CCTTGTGGAGCCAATTAGAG+TGG | + | chr3_4:65308541-65308560 | None:intergenic | 50.0% | |
| ! | CCACTCTAATTGGCTCCACA+AGG | - | chr3_4:65308538-65308557 | Msa0514560:CDS | 50.0% |
| TTCCGAGTTCGCGTTGTGTT+TGG | + | chr3_4:65308674-65308693 | None:intergenic | 50.0% | |
| ACACAACGCGAACTCGGAAT+TGG | - | chr3_4:65308675-65308694 | Msa0514560:CDS | 50.0% | |
| ! | CAGAGTGCTAAGATGAACCG+AGG | - | chr3_4:65308848-65308867 | Msa0514560:intron | 50.0% |
| !!! | CTGAGGGCTAGTTTTTCTGC+AGG | + | chr3_4:65308955-65308974 | None:intergenic | 50.0% |
| TGTAGCATCCGGTGCAATTC+TGG | + | chr3_4:65309068-65309087 | None:intergenic | 50.0% | |
| !!! | TGCTGTGATTTTGAGGTGGG+AGG | - | chr3_4:65309160-65309179 | Msa0514560:intron | 50.0% |
| !!! | GCTGTGATTTTGAGGTGGGA+GGG | - | chr3_4:65309161-65309180 | Msa0514560:intron | 50.0% |
| !!! | CTGTGATTTTGAGGTGGGAG+GGG | - | chr3_4:65309162-65309181 | Msa0514560:intron | 50.0% |
| GTAGTGTGTGCAAGAATCGG+CGG | - | chr3_4:65309424-65309443 | Msa0514560:intron | 50.0% | |
| TAGTGTGTGCAAGAATCGGC+GGG | - | chr3_4:65309425-65309444 | Msa0514560:intron | 50.0% | |
| CGGGACCTTTGGACAAGTAA+TGG | + | chr3_4:65309495-65309514 | None:intergenic | 50.0% | |
| GCCTATCATGGGTCTTCTAG+CGG | - | chr3_4:65309597-65309616 | Msa0514560:intron | 50.0% | |
| TCCGCTAGAAGACCCATGAT+AGG | + | chr3_4:65309601-65309620 | None:intergenic | 50.0% | |
| CAAGTAGGGTTGTTCCGAGT+CGG | + | chr3_4:65310315-65310334 | None:intergenic | 50.0% | |
| !! | GGTGGGGTTGATGATGGCAA+GGG | + | chr3_4:65308458-65308477 | None:intergenic | 55.0% |
| !! | TCCTAGGGTGGGGTTGATGA+TGG | + | chr3_4:65308464-65308483 | None:intergenic | 55.0% |
| !!! | GTGTGTTTTGGCTGGTGCCT+CGG | + | chr3_4:65308868-65308887 | None:intergenic | 55.0% |
| ! | TTGGTGGCCTCTCTGTTGTG+CGG | + | chr3_4:65308978-65308997 | None:intergenic | 55.0% |
| !!! | ATTTTGAGGTGGGAGGGGCT+TGG | - | chr3_4:65309167-65309186 | Msa0514560:intron | 55.0% |
| !! | GGGCTTGGTTCTGTCTGTGA+TGG | - | chr3_4:65309182-65309201 | Msa0514560:intron | 55.0% |
| GGTTGTTCCGAGTCGGATGT+TGG | + | chr3_4:65310308-65310327 | None:intergenic | 55.0% | |
| !! | GGGTGGGGTTGATGATGGCA+AGG | + | chr3_4:65308459-65308478 | None:intergenic | 60.0% |
| GCCATCATCAACCCCACCCT+AGG | - | chr3_4:65308460-65308479 | Msa0514560:CDS | 60.0% | |
| CCTCTCTGTTGTGCGGCTGA+GGG | + | chr3_4:65308971-65308990 | None:intergenic | 60.0% | |
| CCCTCAGCCGCACAACAGAG+AGG | - | chr3_4:65308968-65308987 | Msa0514560:intron | 65.0% | |
| GCCTCTCTGTTGTGCGGCTG+AGG | + | chr3_4:65308972-65308991 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65307682 | 65310391 | 65307682 | ID=Msa0514560;Name=Msa0514560 |
| chr3_4 | mRNA | 65307682 | 65310391 | 65307682 | ID=Msa0514560-mRNA-1;Parent=Msa0514560;Name=Msa0514560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|457 |
| chr3_4 | exon | 65310082 | 65310391 | 65310082 | ID=Msa0514560-mRNA-1:exon:16666;Parent=Msa0514560-mRNA-1 |
| chr3_4 | exon | 65307682 | 65308745 | 65307682 | ID=Msa0514560-mRNA-1:exon:16665;Parent=Msa0514560-mRNA-1 |
| chr3_4 | CDS | 65310082 | 65310391 | 65310082 | ID=Msa0514560-mRNA-1:cds;Parent=Msa0514560-mRNA-1 |
| chr3_4 | CDS | 65307682 | 65308745 | 65307682 | ID=Msa0514560-mRNA-1:cds;Parent=Msa0514560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
