Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422090 | XP_003620884.1 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422090 | G7KJ84 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026750 | Msa0422090 | 0.803655 | 3.143155e-49 | -8.615850e-47 |
Msa0047110 | Msa0422090 | 0.800381 | 1.480035e-48 | -8.615850e-47 |
Msa0422090 | Msa0468680 | 0.891742 | 3.007304e-74 | -8.615850e-47 |
Msa0422090 | Msa0514560 | 0.953971 | 8.423341e-112 | -8.615850e-47 |
Msa0422090 | Msa0878220 | 0.816019 | 6.860027e-52 | -8.615850e-47 |
Msa0422090 | Msa0919860 | 0.820685 | 6.018937e-53 | -8.615850e-47 |
Msa0422090 | Msa1077130 | 0.816456 | 5.477563e-52 | -8.615850e-47 |
Msa0422090 | Msa1077200 | 0.809816 | 1.569136e-50 | -8.615850e-47 |
Msa0422090 | Msa1419690 | 0.801135 | 1.038453e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422090 | MtrunA17_Chr6g0488101 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
Msa0422090 | MtrunA17_Chr6g0488271 | 65.632 | 419 | 132 | 7 | 47 | 457 | 1 | 415 | 0.0 | 528 |
Msa0422090 | MtrunA17_Chr3g0122991 | 79.439 | 321 | 12 | 3 | 107 | 419 | 1 | 275 | 3.80e-177 | 496 |
Msa0422090 | MtrunA17_Chr3g0112311 | 69.014 | 355 | 101 | 5 | 108 | 455 | 3 | 355 | 2.16e-169 | 480 |
Msa0422090 | MtrunA17_Chr4g0075971 | 55.579 | 466 | 173 | 11 | 7 | 457 | 156 | 602 | 3.56e-161 | 468 |
Msa0422090 | MtrunA17_Chr3g0077901 | 61.173 | 358 | 129 | 6 | 104 | 456 | 19 | 371 | 2.43e-143 | 414 |
Msa0422090 | MtrunA17_Chr3g0077801 | 60.172 | 349 | 127 | 7 | 111 | 453 | 6 | 348 | 1.29e-139 | 404 |
Msa0422090 | MtrunA17_Chr6g0452641 | 67.314 | 309 | 91 | 4 | 157 | 457 | 34 | 340 | 1.61e-139 | 404 |
Msa0422090 | MtrunA17_Chr3g0077851 | 60.882 | 340 | 123 | 6 | 122 | 456 | 1 | 335 | 1.26e-133 | 388 |
Msa0422090 | MtrunA17_Chr7g0252101 | 50.439 | 456 | 172 | 17 | 17 | 457 | 16 | 432 | 1.27e-125 | 371 |
Msa0422090 | MtrunA17_Chr1g0207351 | 56.667 | 360 | 133 | 10 | 111 | 457 | 17 | 366 | 2.17e-117 | 348 |
Msa0422090 | MtrunA17_Chr7g0243331 | 54.108 | 353 | 150 | 7 | 110 | 457 | 5 | 350 | 2.39e-114 | 340 |
Msa0422090 | MtrunA17_Chr3g0093911 | 55.220 | 364 | 133 | 11 | 108 | 457 | 3 | 350 | 1.82e-113 | 337 |
Msa0422090 | MtrunA17_Chr3g0123471 | 66.038 | 265 | 84 | 4 | 186 | 450 | 1 | 259 | 2.33e-109 | 323 |
Msa0422090 | MtrunA17_Chr1g0209051 | 55.396 | 278 | 109 | 6 | 186 | 456 | 1 | 270 | 4.97e-86 | 264 |
Msa0422090 | MtrunA17_Chr4g0075861 | 51.502 | 233 | 90 | 6 | 1 | 222 | 150 | 370 | 1.40e-58 | 197 |
Msa0422090 | MtrunA17_Chr7g0243391 | 52.830 | 212 | 90 | 4 | 108 | 311 | 16 | 225 | 2.38e-55 | 184 |
Msa0422090 | MtrunA17_Chr6g0486591 | 60.248 | 161 | 55 | 5 | 304 | 457 | 1 | 159 | 1.23e-53 | 177 |
Msa0422090 | MtrunA17_Chr1g0202841 | 51.397 | 179 | 77 | 5 | 283 | 457 | 7 | 179 | 1.06e-50 | 170 |
Msa0422090 | MtrunA17_Chr1g0196231 | 57.616 | 151 | 57 | 4 | 98 | 245 | 218 | 364 | 7.02e-45 | 160 |
Msa0422090 | MtrunA17_Chr6g0486601 | 66.038 | 106 | 34 | 2 | 1 | 104 | 1 | 106 | 2.75e-41 | 142 |
Msa0422090 | MtrunA17_Chr1g0187941 | 53.788 | 132 | 56 | 2 | 283 | 411 | 7 | 136 | 2.39e-35 | 128 |
Msa0422090 | MtrunA17_Chr1g0206951 | 59.459 | 111 | 43 | 2 | 111 | 219 | 4 | 114 | 2.37e-33 | 122 |
Msa0422090 | MtrunA17_Chr6g0459061 | 26.198 | 313 | 222 | 6 | 114 | 423 | 18 | 324 | 5.30e-25 | 105 |
Msa0422090 | MtrunA17_Chr7g0238781 | 44.776 | 134 | 71 | 3 | 138 | 270 | 27 | 158 | 1.79e-24 | 99.4 |
Msa0422090 | MtrunA17_Chr1g0196241 | 60.811 | 74 | 28 | 1 | 350 | 422 | 1 | 74 | 4.67e-23 | 92.8 |
Msa0422090 | MtrunA17_Chr1g0209191 | 48.515 | 101 | 44 | 3 | 361 | 456 | 1 | 98 | 3.91e-19 | 82.4 |
Msa0422090 | MtrunA17_Chr1g0209061 | 36.923 | 130 | 46 | 4 | 17 | 145 | 13 | 107 | 7.46e-17 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 90 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGGCATATGTATTTAATTT+TGG | 0.076118 | 3_2:-71226053 | Msa0422090:CDS |
TTAAATACATATGCCCTTTA+AGG | 0.116085 | 3_2:+71226059 | None:intergenic |
ACCATCTTTCTTCTTGTAAA+TGG | 0.150870 | 3_2:+71224273 | None:intergenic |
TCTTGCACACACTACCAAAT+TGG | 0.258446 | 3_2:+71224523 | None:intergenic |
GGGCATTTCATAAAATTTAT+TGG | 0.268156 | 3_2:-71224494 | Msa0422090:CDS |
TTATGTCAAGTTGGAATCTT+TGG | 0.282828 | 3_2:-71223836 | Msa0422090:CDS |
GGGTTTCTCCATGAAGTAAA+AGG | 0.289430 | 3_2:-71226211 | Msa0422090:CDS |
TTTGGACAAGTAATGGTTCT+TGG | 0.297479 | 3_2:+71224454 | None:intergenic |
CACAAAATCAGAGTGTATAA+AGG | 0.303879 | 3_2:-71223706 | Msa0422090:CDS |
TTTGATGACCTCTTCCAATT+TGG | 0.304325 | 3_2:-71224537 | Msa0422090:CDS |
CAGAGAATTGTGAGCTTCCT+TGG | 0.308267 | 3_2:-71224593 | Msa0422090:CDS |
TTCCAACTTGACATAATTCA+TGG | 0.322574 | 3_2:+71223843 | None:intergenic |
GTCATCAAAATCTATCATTC+TGG | 0.330461 | 3_2:+71224551 | None:intergenic |
CATTCTTAACACGGGACCTT+TGG | 0.330540 | 3_2:+71224436 | None:intergenic |
CTCAGAGGAATTTGTCTTGG+TGG | 0.350287 | 3_2:-71224178 | Msa0422090:CDS |
ACAGAAGGTGGAATTAATTC+TGG | 0.356713 | 3_2:+71223667 | None:intergenic |
GAAGTAAAAGGCTTGTTTCA+TGG | 0.359706 | 3_2:-71226199 | Msa0422090:CDS |
ACAAAATCAGAGTGTATAAA+GGG | 0.359913 | 3_2:-71223705 | Msa0422090:CDS |
AATTTATTGGAGGAATTTCA+TGG | 0.361680 | 3_2:-71224481 | Msa0422090:CDS |
CCAGTTCTAAAATCTGGAAC+CGG | 0.371531 | 3_2:-71226232 | Msa0422090:CDS |
GTCTATCAATCTCGAAATCT+TGG | 0.381218 | 3_2:-71224126 | Msa0422090:CDS |
CTTGTCAGTGATAACATATA+TGG | 0.392160 | 3_2:+71224047 | None:intergenic |
TGATCATGATGGATTGGAAT+TGG | 0.396527 | 3_2:+71225992 | None:intergenic |
TTTCATAACCCCACATGCTT+GGG | 0.397525 | 3_2:+71223761 | None:intergenic |
AAGGCTTGTTTCATGGCAAA+AGG | 0.410150 | 3_2:-71226192 | Msa0422090:CDS |
CTTTGTTTGAATTCTTGAAC+TGG | 0.411879 | 3_2:+71226094 | None:intergenic |
ACACTTCCAGTTCTAAAATC+TGG | 0.417357 | 3_2:-71226238 | Msa0422090:CDS |
TATGTCAAGTTGGAATCTTT+GGG | 0.417393 | 3_2:-71223835 | Msa0422090:CDS |
AGGGTGAATGAGGTCCTTAA+AGG | 0.432093 | 3_2:-71226073 | Msa0422090:CDS |
AGCGGATATTTGATCATGAC+AGG | 0.432124 | 3_2:-71224324 | Msa0422090:CDS |
TCCATTTACAAGAAGAAAGA+TGG | 0.442051 | 3_2:-71224274 | Msa0422090:CDS |
ACATGAGGCATTATCGAATC+AGG | 0.445618 | 3_2:-71226018 | Msa0422090:CDS |
TTGGTGAGATAAGCTGATAA+AGG | 0.447533 | 3_2:+71224407 | None:intergenic |
AGAGAATTGTGAGCTTCCTT+GGG | 0.456812 | 3_2:-71224592 | Msa0422090:CDS |
CAAAGGTCCCGTGTTAAGAA+TGG | 0.463567 | 3_2:-71224435 | Msa0422090:CDS |
ATCAATCTCGAAATCTTGGT+TGG | 0.466791 | 3_2:-71224122 | Msa0422090:CDS |
TTGGTAGTGTGTGCAAGAAT+TGG | 0.479679 | 3_2:-71224518 | Msa0422090:CDS |
GGAACAACCCTACTTGTACT+TGG | 0.481784 | 3_2:-71223620 | Msa0422090:CDS |
CGGGACCTTTGGACAAGTAA+TGG | 0.484128 | 3_2:+71224447 | None:intergenic |
TCAATCTCGAAATCTTGGTT+GGG | 0.489944 | 3_2:-71224121 | Msa0422090:CDS |
ATGCTGATTATGCATATGTA+AGG | 0.493465 | 3_2:-71223948 | Msa0422090:CDS |
GGGTGAATGAGGTCCTTAAA+GGG | 0.494064 | 3_2:-71226072 | Msa0422090:CDS |
TACTTATTCAACACCACATA+GGG | 0.497231 | 3_2:-71224097 | Msa0422090:CDS |
AACCATGAATTATGTCAAGT+TGG | 0.497832 | 3_2:-71223845 | Msa0422090:CDS |
AGGCTTGTTTCATGGCAAAA+GGG | 0.501409 | 3_2:-71226191 | Msa0422090:CDS |
AGTTCAAGAATTCAAACAAA+GGG | 0.501785 | 3_2:-71226092 | Msa0422090:CDS |
GGTTGTTCCGAGTCGGATGT+TGG | 0.502946 | 3_2:+71223634 | None:intergenic |
GACCTAGTTGTTGATCATGA+TGG | 0.505103 | 3_2:+71225981 | None:intergenic |
GTACAGATTAAACATTATGT+TGG | 0.512395 | 3_2:+71223882 | None:intergenic |
ATCACTGACAAGGCCAACAT+TGG | 0.512601 | 3_2:-71224036 | Msa0422090:CDS |
CAGTTCTAAAATCTGGAACC+GGG | 0.514932 | 3_2:-71226231 | Msa0422090:CDS |
TTTAAAGTTGATTACTCCTG+TGG | 0.517486 | 3_2:-71224234 | Msa0422090:CDS |
AACCCTACTTGTACTTGGAC+TGG | 0.517501 | 3_2:-71223615 | Msa0422090:CDS |
GACTCCATGTTCGTTTGCCA+TGG | 0.517527 | 3_2:+71226261 | None:intergenic |
TCCGCTAGAAGACCCATGAT+AGG | 0.521743 | 3_2:+71224341 | None:intergenic |
TAAGACATGGCAAGAACCAC+AGG | 0.524722 | 3_2:+71224218 | None:intergenic |
AGTTGTTGATCATGATGGAT+TGG | 0.527383 | 3_2:+71225986 | None:intergenic |
GCCTCCATGGCAAACGAACA+TGG | 0.527596 | 3_2:-71226265 | None:intergenic |
AGGCTCAGAGGAATTTGTCT+TGG | 0.528013 | 3_2:-71224181 | Msa0422090:CDS |
GCCTATCATGGGTCTTCTAG+CGG | 0.531172 | 3_2:-71224342 | Msa0422090:CDS |
ATTCAAACAAAGGGTGAATG+AGG | 0.537107 | 3_2:-71226083 | Msa0422090:CDS |
AAAAGTTTATCACTCAAAGA+TGG | 0.550583 | 3_2:-71224385 | Msa0422090:CDS |
TGATTATGCATATGTAAGGT+TGG | 0.550918 | 3_2:-71223944 | Msa0422090:CDS |
CATTTCATAAAATTTATTGG+AGG | 0.553532 | 3_2:-71224491 | Msa0422090:CDS |
TTACTTATTCAACACCACAT+AGG | 0.554579 | 3_2:-71224098 | Msa0422090:CDS |
CAAACTGAGTATCCCAATGT+TGG | 0.558277 | 3_2:+71224023 | None:intergenic |
TCACTGACAAGGCCAACATT+GGG | 0.559813 | 3_2:-71224035 | Msa0422090:CDS |
ACACCAGTCCAAGTACAAGT+AGG | 0.564649 | 3_2:+71223612 | None:intergenic |
CAAGTAGGGTTGTTCCGAGT+CGG | 0.572575 | 3_2:+71223627 | None:intergenic |
CACCAGTCCAAGTACAAGTA+GGG | 0.572999 | 3_2:+71223613 | None:intergenic |
CATTGAACAACCCAAGCATG+TGG | 0.574764 | 3_2:-71223771 | Msa0422090:CDS |
ACAAAATCAACAACCCTATG+TGG | 0.580187 | 3_2:+71224084 | None:intergenic |
GTAGTGTGTGCAAGAATTGG+CGG | 0.595582 | 3_2:-71224515 | Msa0422090:CDS |
CAGTTCAAGAATTCAAACAA+AGG | 0.597402 | 3_2:-71226093 | Msa0422090:CDS |
ATGATATCTAACAAATCCCA+AGG | 0.602002 | 3_2:+71224576 | None:intergenic |
TGGGATTCAACGACTACATG+AGG | 0.603464 | 3_2:-71226033 | Msa0422090:CDS |
AAGAACCATTACTTGTCCAA+AGG | 0.610806 | 3_2:-71224452 | Msa0422090:CDS |
CAACAACTAGGTCATAAGAC+TGG | 0.619673 | 3_2:-71225971 | Msa0422090:intron |
TTGAACAACCCAAGCATGTG+GGG | 0.628995 | 3_2:-71223769 | Msa0422090:CDS |
ATTGAACAACCCAAGCATGT+GGG | 0.631550 | 3_2:-71223770 | Msa0422090:CDS |
ACACACTACCAAATTGGAAG+AGG | 0.631572 | 3_2:+71224529 | None:intergenic |
TAGTGTGTGCAAGAATTGGC+GGG | 0.631650 | 3_2:-71224514 | Msa0422090:CDS |
GTTGGTTCGATAAGTACAGA+AGG | 0.637789 | 3_2:+71223652 | None:intergenic |
TAATCAGCATAAGTTACACT+AGG | 0.639591 | 3_2:+71223961 | None:intergenic |
CATATATGTTATCACTGACA+AGG | 0.643115 | 3_2:-71224046 | Msa0422090:CDS |
TATCGAACCAACATCCGACT+CGG | 0.648262 | 3_2:-71223641 | Msa0422090:CDS |
GGTTCGATAAGTACAGAAGG+TGG | 0.650996 | 3_2:+71223655 | None:intergenic |
CAAAATCAGAGTGTATAAAG+GGG | 0.656169 | 3_2:-71223704 | Msa0422090:CDS |
ATCCATCATGATCAACAACT+AGG | 0.666444 | 3_2:-71225983 | Msa0422090:CDS |
GCGGATATTTGATCATGACA+GGG | 0.702617 | 3_2:-71224323 | Msa0422090:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATTTTATAAATGGGTT+TGG | - | chr3_2:71223945-71223964 | Msa0422090:CDS | 15.0% |
!! | TTGCACAAATATTTATATAA+AGG | + | chr3_2:71224164-71224183 | None:intergenic | 15.0% |
!! | TTAAACCATTTAAAAAAAAC+AGG | + | chr3_2:71225129-71225148 | None:intergenic | 15.0% |
!!! | TTTTTAAATGGTTTAATGTT+TGG | - | chr3_2:71225133-71225152 | Msa0422090:intron | 15.0% |
!! | TAAAATTATCAACAAATGTG+AGG | + | chr3_2:71223923-71223942 | None:intergenic | 20.0% |
!! | TGTGTTCATAACAAATAAAA+AGG | - | chr3_2:71224084-71224103 | Msa0422090:CDS | 20.0% |
!! | TTCTTGTAAAAGTTATAAGA+AGG | + | chr3_2:71224222-71224241 | None:intergenic | 20.0% |
!! | AAAATCATTAAAATCCAGTT+AGG | - | chr3_2:71224245-71224264 | Msa0422090:CDS | 20.0% |
!!! | AATATCATAATTTGCATGTT+TGG | + | chr3_2:71224406-71224425 | None:intergenic | 20.0% |
!!! | GAATTACATTGTTTAGTTTT+CGG | - | chr3_2:71224513-71224532 | Msa0422090:CDS | 20.0% |
!!! | TTACTCCTGTTTTTTTTAAA+TGG | - | chr3_2:71225121-71225140 | Msa0422090:intron | 20.0% |
!! | CATTTCATAAAATTTATTGG+AGG | - | chr3_2:71225338-71225357 | Msa0422090:intron | 20.0% |
!!! | GATTTTGTGAATTACATTAT+TGG | + | chr3_2:71226112-71226131 | None:intergenic | 20.0% |
! | AGTTCAAGAATTCAAACAAA+GGG | - | chr3_2:71223737-71223756 | Msa0422090:CDS | 25.0% |
! | TTAAATACATATGCCCTTTA+AGG | + | chr3_2:71223773-71223792 | None:intergenic | 25.0% |
!!! | AGGGCATATGTATTTAATTT+TGG | - | chr3_2:71223776-71223795 | Msa0422090:CDS | 25.0% |
!!! | GGGCATATGTATTTAATTTT+GGG | - | chr3_2:71223777-71223796 | Msa0422090:CDS | 25.0% |
! | CTCAAATAGACAATTACAAA+CGG | + | chr3_2:71224000-71224019 | None:intergenic | 25.0% |
! | TGTAAAAGTTATAAGAAGGA+AGG | + | chr3_2:71224218-71224237 | None:intergenic | 25.0% |
!!! | GACTCTATTTAGTTTGAATT+GGG | - | chr3_2:71224371-71224390 | Msa0422090:CDS | 25.0% |
! | GTAAATATAGTTTACCTTGT+GGG | + | chr3_2:71224445-71224464 | None:intergenic | 25.0% |
! | CTATATTTACCTCTACAATT+AGG | - | chr3_2:71224455-71224474 | Msa0422090:CDS | 25.0% |
!!! | TGGAGTTTTTAGTTTGTATT+GGG | + | chr3_2:71224717-71224736 | None:intergenic | 25.0% |
!!! | ATGGAGTTTTTAGTTTGTAT+TGG | + | chr3_2:71224718-71224737 | None:intergenic | 25.0% |
! | TTTCCATTTGAGTATGAAAA+TGG | - | chr3_2:71224985-71225004 | Msa0422090:intron | 25.0% |
! | TTCCATTTGAGTATGAAAAT+GGG | - | chr3_2:71224986-71225005 | Msa0422090:intron | 25.0% |
! | GAAAATGGGTATTTATTGTT+TGG | - | chr3_2:71225000-71225019 | Msa0422090:intron | 25.0% |
! | ATACAAAGGGAAAAAAATGA+AGG | - | chr3_2:71225210-71225229 | Msa0422090:intron | 25.0% |
! | GGGCATTTCATAAAATTTAT+TGG | - | chr3_2:71225335-71225354 | Msa0422090:intron | 25.0% |
! | AATTTATTGGAGGAATTTCA+TGG | - | chr3_2:71225348-71225367 | Msa0422090:intron | 25.0% |
!! | TCTTTGAGTGATAAACTTTT+TGG | + | chr3_2:71225444-71225463 | None:intergenic | 25.0% |
! | AAAAGTTTATCACTCAAAGA+TGG | - | chr3_2:71225444-71225463 | Msa0422090:intron | 25.0% |
! | GTACAGATTAAACATTATGT+TGG | + | chr3_2:71225950-71225969 | None:intergenic | 25.0% |
! | ACAAAATCAGAGTGTATAAA+GGG | - | chr3_2:71226124-71226143 | Msa0422090:CDS | 25.0% |
! | CTTTGTTTGAATTCTTGAAC+TGG | + | chr3_2:71223738-71223757 | None:intergenic | 30.0% |
CAGTTCAAGAATTCAAACAA+AGG | - | chr3_2:71223736-71223755 | Msa0422090:CDS | 30.0% | |
TAAAAACATGAAGTCTGAGT+AGG | + | chr3_2:71224120-71224139 | None:intergenic | 30.0% | |
! | TACTCAGACTTCATGTTTTT+AGG | - | chr3_2:71224119-71224138 | Msa0422090:CDS | 30.0% |
! | TGATGATTGCTGTTAAAACA+AGG | - | chr3_2:71224189-71224208 | Msa0422090:CDS | 30.0% |
AATCTAACTGAATTCCTAAC+TGG | + | chr3_2:71224262-71224281 | None:intergenic | 30.0% | |
TTAGTATTCCCCAACATTTA+TGG | - | chr3_2:71224290-71224309 | Msa0422090:CDS | 30.0% | |
ACAACATCACCATAAATGTT+GGG | + | chr3_2:71224302-71224321 | None:intergenic | 30.0% | |
AACAACATCACCATAAATGT+TGG | + | chr3_2:71224303-71224322 | None:intergenic | 30.0% | |
TCAAACTAAATAGAGTCCTA+GGG | + | chr3_2:71224368-71224387 | None:intergenic | 30.0% | |
TTCAAACTAAATAGAGTCCT+AGG | + | chr3_2:71224369-71224388 | None:intergenic | 30.0% | |
!! | GGACTCTATTTAGTTTGAAT+TGG | - | chr3_2:71224370-71224389 | Msa0422090:CDS | 30.0% |
TATGATATTGCCACTCTAAT+TGG | - | chr3_2:71224417-71224436 | Msa0422090:CDS | 30.0% | |
GGTAAATATAGTTTACCTTG+TGG | + | chr3_2:71224446-71224465 | None:intergenic | 30.0% | |
AACAAACATCCTAATTGTAG+AGG | + | chr3_2:71224467-71224486 | None:intergenic | 30.0% | |
!!! | GTTGTTTTGTTTCTGATTCA+TGG | + | chr3_2:71224631-71224650 | None:intergenic | 30.0% |
! | CAACTTTTATAGCTTTCGTA+GGG | + | chr3_2:71224919-71224938 | None:intergenic | 30.0% |
GAAATTAACAATGTAGCATC+CGG | + | chr3_2:71224969-71224988 | None:intergenic | 30.0% | |
! | TACCCATTTTCATACTCAAA+TGG | + | chr3_2:71224991-71225010 | None:intergenic | 30.0% |
CATAGTTATGTTGCTGTAAA+AGG | - | chr3_2:71225023-71225042 | Msa0422090:intron | 30.0% | |
!! | TGTCATTTGTTGTGATACAA+AGG | - | chr3_2:71225196-71225215 | Msa0422090:intron | 30.0% |
!! | GTCATTTGTTGTGATACAAA+GGG | - | chr3_2:71225197-71225216 | Msa0422090:intron | 30.0% |
ATGATATCTAACAAATCCCA+AGG | + | chr3_2:71225256-71225275 | None:intergenic | 30.0% | |
GTCATCAAAATCTATCATTC+TGG | + | chr3_2:71225281-71225300 | None:intergenic | 30.0% | |
AGGAAAAACCATTCTTAACA+CGG | + | chr3_2:71225405-71225424 | None:intergenic | 30.0% | |
TCCATTTACAAGAAGAAAGA+TGG | - | chr3_2:71225555-71225574 | Msa0422090:intron | 30.0% | |
ACCATCTTTCTTCTTGTAAA+TGG | + | chr3_2:71225559-71225578 | None:intergenic | 30.0% | |
! | TTTAAAGTTGATTACTCCTG+TGG | - | chr3_2:71225595-71225614 | Msa0422090:intron | 30.0% |
TGTAAAAAGCAAGTAAGACA+TGG | + | chr3_2:71225627-71225646 | None:intergenic | 30.0% | |
TTACTTATTCAACACCACAT+AGG | - | chr3_2:71225731-71225750 | Msa0422090:intron | 30.0% | |
TACTTATTCAACACCACATA+GGG | - | chr3_2:71225732-71225751 | Msa0422090:intron | 30.0% | |
CTTGTCAGTGATAACATATA+TGG | + | chr3_2:71225785-71225804 | None:intergenic | 30.0% | |
CATATATGTTATCACTGACA+AGG | - | chr3_2:71225783-71225802 | Msa0422090:intron | 30.0% | |
TAATCAGCATAAGTTACACT+AGG | + | chr3_2:71225871-71225890 | None:intergenic | 30.0% | |
! | ATGCTGATTATGCATATGTA+AGG | - | chr3_2:71225881-71225900 | Msa0422090:intron | 30.0% |
TGATTATGCATATGTAAGGT+TGG | - | chr3_2:71225885-71225904 | Msa0422090:intron | 30.0% | |
AACCATGAATTATGTCAAGT+TGG | - | chr3_2:71225984-71226003 | Msa0422090:CDS | 30.0% | |
TTCCAACTTGACATAATTCA+TGG | + | chr3_2:71225989-71226008 | None:intergenic | 30.0% | |
!! | TTATGTCAAGTTGGAATCTT+TGG | - | chr3_2:71225993-71226012 | Msa0422090:CDS | 30.0% |
!! | TATGTCAAGTTGGAATCTTT+GGG | - | chr3_2:71225994-71226013 | Msa0422090:CDS | 30.0% |
CACAAAATCAGAGTGTATAA+AGG | - | chr3_2:71226123-71226142 | Msa0422090:CDS | 30.0% | |
CAAAATCAGAGTGTATAAAG+GGG | - | chr3_2:71226125-71226144 | Msa0422090:CDS | 30.0% | |
!! | ACACTTCCAGTTCTAAAATC+TGG | - | chr3_2:71223591-71223610 | Msa0422090:CDS | 35.0% |
! | TTTTACTTCATGGAGAAACC+CGG | + | chr3_2:71223619-71223638 | None:intergenic | 35.0% |
! | GAAACAAGCCTTTTACTTCA+TGG | + | chr3_2:71223629-71223648 | None:intergenic | 35.0% |
! | GAAGTAAAAGGCTTGTTTCA+TGG | - | chr3_2:71223630-71223649 | Msa0422090:CDS | 35.0% |
ATTCAAACAAAGGGTGAATG+AGG | - | chr3_2:71223746-71223765 | Msa0422090:CDS | 35.0% | |
!! | TGATCATGATGGATTGGAAT+TGG | + | chr3_2:71223840-71223859 | None:intergenic | 35.0% |
!! | AGTTGTTGATCATGATGGAT+TGG | + | chr3_2:71223846-71223865 | None:intergenic | 35.0% |
ATCCATCATGATCAACAACT+AGG | - | chr3_2:71223846-71223865 | Msa0422090:CDS | 35.0% | |
!!! | CAGACTTCATGTTTTTAGGT+TGG | - | chr3_2:71224123-71224142 | Msa0422090:CDS | 35.0% |
CAACATCACCATAAATGTTG+GGG | + | chr3_2:71224301-71224320 | None:intergenic | 35.0% | |
! | CATTTATGGTGATGTTGTTG+AGG | - | chr3_2:71224304-71224323 | Msa0422090:CDS | 35.0% |
!!! | GGCTATTTGTTTTGGTGTAT+CGG | + | chr3_2:71224679-71224698 | None:intergenic | 35.0% |
!!! | GTTTTGTTTCTGGTGTGTTT+TGG | + | chr3_2:71224770-71224789 | None:intergenic | 35.0% |
!!! | CAGTATTCGTGTTTTGTTTC+TGG | + | chr3_2:71224780-71224799 | None:intergenic | 35.0% |
! | GCAACTTTTATAGCTTTCGT+AGG | + | chr3_2:71224920-71224939 | None:intergenic | 35.0% |
TCACAACAAATGACAGTGTT+AGG | + | chr3_2:71225191-71225210 | None:intergenic | 35.0% | |
! | TTTGATGACCTCTTCCAATT+TGG | - | chr3_2:71225292-71225311 | Msa0422090:intron | 35.0% |
TTTGGACAAGTAATGGTTCT+TGG | + | chr3_2:71225378-71225397 | None:intergenic | 35.0% | |
AAGAACCATTACTTGTCCAA+AGG | - | chr3_2:71225377-71225396 | Msa0422090:intron | 35.0% | |
GGAAAAACCATTCTTAACAC+GGG | + | chr3_2:71225404-71225423 | None:intergenic | 35.0% | |
TTGGTGAGATAAGCTGATAA+AGG | + | chr3_2:71225425-71225444 | None:intergenic | 35.0% | |
GGCAAAAATGACGAAGTTAT+TGG | + | chr3_2:71225470-71225489 | None:intergenic | 35.0% | |
!!! | TTCGTCATTTTTGCCTATCA+TGG | - | chr3_2:71225475-71225494 | Msa0422090:intron | 35.0% |
!!! | TCGTCATTTTTGCCTATCAT+GGG | - | chr3_2:71225476-71225495 | Msa0422090:intron | 35.0% |
!!! | GTCTTACTTGCTTTTTACAG+AGG | - | chr3_2:71225628-71225647 | Msa0422090:intron | 35.0% |
GTCTATCAATCTCGAAATCT+TGG | - | chr3_2:71225703-71225722 | Msa0422090:intron | 35.0% | |
ATCAATCTCGAAATCTTGGT+TGG | - | chr3_2:71225707-71225726 | Msa0422090:intron | 35.0% | |
TCAATCTCGAAATCTTGGTT+GGG | - | chr3_2:71225708-71225727 | Msa0422090:intron | 35.0% | |
ACAAAATCAACAACCCTATG+TGG | + | chr3_2:71225748-71225767 | None:intergenic | 35.0% | |
ACAGAAGGTGGAATTAATTC+TGG | + | chr3_2:71226165-71226184 | None:intergenic | 35.0% | |
!! | CCAGTTCTAAAATCTGGAAC+CGG | - | chr3_2:71223597-71223616 | Msa0422090:CDS | 40.0% |
!! | CAGTTCTAAAATCTGGAACC+GGG | - | chr3_2:71223598-71223617 | Msa0422090:CDS | 40.0% |
GGGTTTCTCCATGAAGTAAA+AGG | - | chr3_2:71223618-71223637 | Msa0422090:CDS | 40.0% | |
! | AAGGCTTGTTTCATGGCAAA+AGG | - | chr3_2:71223637-71223656 | Msa0422090:CDS | 40.0% |
! | AGGCTTGTTTCATGGCAAAA+GGG | - | chr3_2:71223638-71223657 | Msa0422090:CDS | 40.0% |
! | ACATGAGGCATTATCGAATC+AGG | - | chr3_2:71223811-71223830 | Msa0422090:CDS | 40.0% |
GACCTAGTTGTTGATCATGA+TGG | + | chr3_2:71223851-71223870 | None:intergenic | 40.0% | |
CAACAACTAGGTCATAAGAC+TGG | - | chr3_2:71223858-71223877 | Msa0422090:CDS | 40.0% | |
ACTAAATAGAGTCCTAGGGT+GGG | + | chr3_2:71224364-71224383 | None:intergenic | 40.0% | |
AACTAAATAGAGTCCTAGGG+TGG | + | chr3_2:71224365-71224384 | None:intergenic | 40.0% | |
ACAGATTACAACACCGACAA+AGG | - | chr3_2:71224651-71224670 | Msa0422090:intron | 40.0% | |
TATTGGGTTATGCTTTGCCT+GGG | + | chr3_2:71224701-71224720 | None:intergenic | 40.0% | |
! | CTGTTCAGTGGTAGCAATTT+TGG | + | chr3_2:71224807-71224826 | None:intergenic | 40.0% |
!!! | TGTGCTGATTTTCTGTTCAG+TGG | + | chr3_2:71224819-71224838 | None:intergenic | 40.0% |
!!! | GCGTTTTTGTGTTACTTTGG+TGG | + | chr3_2:71224884-71224903 | None:intergenic | 40.0% |
!!! | GGTGCGTTTTTGTGTTACTT+TGG | + | chr3_2:71224887-71224906 | None:intergenic | 40.0% |
! | GCTTTCGTAGGGATGTATTT+TGG | + | chr3_2:71224908-71224927 | None:intergenic | 40.0% |
!!! | AGGTGTTTGCTGTGATTTTG+AGG | - | chr3_2:71225043-71225062 | Msa0422090:intron | 40.0% |
!!! | TGTTTGCTGTGATTTTGAGG+TGG | - | chr3_2:71225046-71225065 | Msa0422090:intron | 40.0% |
!!! | GTTTGCTGTGATTTTGAGGT+GGG | - | chr3_2:71225047-71225066 | Msa0422090:intron | 40.0% |
! | TTCTGTCTGTGATGGAGTAT+GGG | - | chr3_2:71225080-71225099 | Msa0422090:intron | 40.0% |
AGAGAATTGTGAGCTTCCTT+GGG | - | chr3_2:71225237-71225256 | Msa0422090:intron | 40.0% | |
ACACACTACCAAATTGGAAG+AGG | + | chr3_2:71225303-71225322 | None:intergenic | 40.0% | |
TCTTGCACACACTACCAAAT+TGG | + | chr3_2:71225309-71225328 | None:intergenic | 40.0% | |
!! | TTGGTAGTGTGTGCAAGAAT+TGG | - | chr3_2:71225311-71225330 | Msa0422090:intron | 40.0% |
AGCGGATATTTGATCATGAC+AGG | - | chr3_2:71225505-71225524 | Msa0422090:intron | 40.0% | |
GCGGATATTTGATCATGACA+GGG | - | chr3_2:71225506-71225525 | Msa0422090:intron | 40.0% | |
CAAACTGAGTATCCCAATGT+TGG | + | chr3_2:71225809-71225828 | None:intergenic | 40.0% | |
ATTGAACAACCCAAGCATGT+GGG | - | chr3_2:71226059-71226078 | Msa0422090:CDS | 40.0% | |
TTTCATAACCCCACATGCTT+GGG | + | chr3_2:71226071-71226090 | None:intergenic | 40.0% | |
! | TTTTCATAACCCCACATGCT+TGG | + | chr3_2:71226072-71226091 | None:intergenic | 40.0% |
!! | GTTGGTTCGATAAGTACAGA+AGG | + | chr3_2:71226180-71226199 | None:intergenic | 40.0% |
!!! | CCGGTTCCAGATTTTAGAAC+TGG | + | chr3_2:71223600-71223619 | None:intergenic | 45.0% |
AGGGTGAATGAGGTCCTTAA+AGG | - | chr3_2:71223756-71223775 | Msa0422090:CDS | 45.0% | |
GGGTGAATGAGGTCCTTAAA+GGG | - | chr3_2:71223757-71223776 | Msa0422090:CDS | 45.0% | |
TGGGATTCAACGACTACATG+AGG | - | chr3_2:71223796-71223815 | Msa0422090:CDS | 45.0% | |
!! | GTTGATGATGGCAAGGGTTT+AGG | + | chr3_2:71224341-71224360 | None:intergenic | 45.0% |
CTAAATAGAGTCCTAGGGTG+GGG | + | chr3_2:71224363-71224382 | None:intergenic | 45.0% | |
ATCCAAACACAACGCGAACT+CGG | - | chr3_2:71224559-71224578 | Msa0422090:CDS | 45.0% | |
! | AGCACGTGTTTTCGGATTTG+TGG | + | chr3_2:71224599-71224618 | None:intergenic | 45.0% |
CAAATCCGAAAACACGTGCT+AGG | - | chr3_2:71224599-71224618 | Msa0422090:CDS | 45.0% | |
! | TGCTACCTAGCACGTGTTTT+CGG | + | chr3_2:71224607-71224626 | None:intergenic | 45.0% |
!! | TGGTGTATCGGTTCCTTTGT+CGG | + | chr3_2:71224667-71224686 | None:intergenic | 45.0% |
ACACCAAAACAAATAGCCCC+AGG | - | chr3_2:71224681-71224700 | Msa0422090:intron | 45.0% | |
! | TTGCCTGGGGCTATTTGTTT+TGG | + | chr3_2:71224687-71224706 | None:intergenic | 45.0% |
ATTGGGTTATGCTTTGCCTG+GGG | + | chr3_2:71224700-71224719 | None:intergenic | 45.0% | |
GTATTGGGTTATGCTTTGCC+TGG | + | chr3_2:71224702-71224721 | None:intergenic | 45.0% | |
GGTTCATCTTAGCACTCTGA+TGG | + | chr3_2:71224737-71224756 | None:intergenic | 45.0% | |
!!! | TGTTTCTGGTGTGTTTTGGC+TGG | + | chr3_2:71224766-71224785 | None:intergenic | 45.0% |
TGCCTAAACCAGAATTGCAC+CGG | - | chr3_2:71224947-71224966 | Msa0422090:intron | 45.0% | |
!! | ATCCGGTGCAATTCTGGTTT+AGG | + | chr3_2:71224952-71224971 | None:intergenic | 45.0% |
! | GTTCTGTCTGTGATGGAGTA+TGG | - | chr3_2:71225079-71225098 | Msa0422090:intron | 45.0% |
! | TCTGTCTGTGATGGAGTATG+GGG | - | chr3_2:71225081-71225100 | Msa0422090:intron | 45.0% |
!! | TGTGATGGAGTATGGGGTTT+TGG | - | chr3_2:71225087-71225106 | Msa0422090:intron | 45.0% |
CAGAGAATTGTGAGCTTCCT+TGG | - | chr3_2:71225236-71225255 | Msa0422090:intron | 45.0% | |
GTAGTGTGTGCAAGAATTGG+CGG | - | chr3_2:71225314-71225333 | Msa0422090:intron | 45.0% | |
TAGTGTGTGCAAGAATTGGC+GGG | - | chr3_2:71225315-71225334 | Msa0422090:intron | 45.0% | |
CATTCTTAACACGGGACCTT+TGG | + | chr3_2:71225396-71225415 | None:intergenic | 45.0% | |
CAAAGGTCCCGTGTTAAGAA+TGG | - | chr3_2:71225394-71225413 | Msa0422090:intron | 45.0% | |
TAAGACATGGCAAGAACCAC+AGG | + | chr3_2:71225614-71225633 | None:intergenic | 45.0% | |
!! | TGCTTTTTACAGAGGCTCAG+AGG | - | chr3_2:71225636-71225655 | Msa0422090:intron | 45.0% |
AGGCTCAGAGGAATTTGTCT+TGG | - | chr3_2:71225648-71225667 | Msa0422090:intron | 45.0% | |
CTCAGAGGAATTTGTCTTGG+TGG | - | chr3_2:71225651-71225670 | Msa0422090:intron | 45.0% | |
ATCACTGACAAGGCCAACAT+TGG | - | chr3_2:71225793-71225812 | Msa0422090:intron | 45.0% | |
TCACTGACAAGGCCAACATT+GGG | - | chr3_2:71225794-71225813 | Msa0422090:intron | 45.0% | |
CATTGAACAACCCAAGCATG+TGG | - | chr3_2:71226058-71226077 | Msa0422090:CDS | 45.0% | |
TTGAACAACCCAAGCATGTG+GGG | - | chr3_2:71226060-71226079 | Msa0422090:CDS | 45.0% | |
GGTTCGATAAGTACAGAAGG+TGG | + | chr3_2:71226177-71226196 | None:intergenic | 45.0% | |
TATCGAACCAACATCCGACT+CGG | - | chr3_2:71226188-71226207 | Msa0422090:CDS | 45.0% | |
GGAACAACCCTACTTGTACT+TGG | - | chr3_2:71226209-71226228 | Msa0422090:CDS | 45.0% | |
AACCCTACTTGTACTTGGAC+TGG | - | chr3_2:71226214-71226233 | Msa0422090:CDS | 45.0% | |
CACCAGTCCAAGTACAAGTA+GGG | + | chr3_2:71226219-71226238 | None:intergenic | 45.0% | |
ACACCAGTCCAAGTACAAGT+AGG | + | chr3_2:71226220-71226239 | None:intergenic | 45.0% | |
!!! | TTTACTATATATTTTATAAA+TGG | - | chr3_2:71223939-71223958 | Msa0422090:CDS | 5.0% |
!!! | TTACTATATATTTTATAAAT+GGG | - | chr3_2:71223940-71223959 | Msa0422090:CDS | 5.0% |
CTTGTGGGAGCCAATTAGAG+TGG | + | chr3_2:71224430-71224449 | None:intergenic | 50.0% | |
! | CACTCTAATTGGCTCCCACA+AGG | - | chr3_2:71224428-71224447 | Msa0422090:CDS | 50.0% |
TTCCGAGTTCGCGTTGTGTT+TGG | + | chr3_2:71224564-71224583 | None:intergenic | 50.0% | |
ACACAACGCGAACTCGGAAT+TGG | - | chr3_2:71224565-71224584 | Msa0422090:CDS | 50.0% | |
! | CAGAGTGCTAAGATGAACCG+AGG | - | chr3_2:71224738-71224757 | Msa0422090:intron | 50.0% |
!!! | CTGAGGGCTAGTTTTTCTGC+AGG | + | chr3_2:71224845-71224864 | None:intergenic | 50.0% |
TGTAGCATCCGGTGCAATTC+TGG | + | chr3_2:71224958-71224977 | None:intergenic | 50.0% | |
!!! | TGCTGTGATTTTGAGGTGGG+AGG | - | chr3_2:71225050-71225069 | Msa0422090:intron | 50.0% |
!!! | GCTGTGATTTTGAGGTGGGA+GGG | - | chr3_2:71225051-71225070 | Msa0422090:intron | 50.0% |
!!! | CTGTGATTTTGAGGTGGGAG+GGG | - | chr3_2:71225052-71225071 | Msa0422090:intron | 50.0% |
CGGGACCTTTGGACAAGTAA+TGG | + | chr3_2:71225385-71225404 | None:intergenic | 50.0% | |
GCCTATCATGGGTCTTCTAG+CGG | - | chr3_2:71225487-71225506 | Msa0422090:intron | 50.0% | |
TCCGCTAGAAGACCCATGAT+AGG | + | chr3_2:71225491-71225510 | None:intergenic | 50.0% | |
CAAGTAGGGTTGTTCCGAGT+CGG | + | chr3_2:71226205-71226224 | None:intergenic | 50.0% | |
!! | GGTGGGGTTGATGATGGCAA+GGG | + | chr3_2:71224347-71224366 | None:intergenic | 55.0% |
!! | TCCTAGGGTGGGGTTGATGA+TGG | + | chr3_2:71224353-71224372 | None:intergenic | 55.0% |
!!! | GTGTGTTTTGGCTGGTGCCT+CGG | + | chr3_2:71224758-71224777 | None:intergenic | 55.0% |
! | TTGGTGGCCTCTCTGTTGTG+CGG | + | chr3_2:71224868-71224887 | None:intergenic | 55.0% |
!!! | ATTTTGAGGTGGGAGGGGCT+TGG | - | chr3_2:71225057-71225076 | Msa0422090:intron | 55.0% |
!! | GGGCTTGGTTCTGTCTGTGA+TGG | - | chr3_2:71225072-71225091 | Msa0422090:intron | 55.0% |
GGTTGTTCCGAGTCGGATGT+TGG | + | chr3_2:71226198-71226217 | None:intergenic | 55.0% | |
!! | GGGTGGGGTTGATGATGGCA+AGG | + | chr3_2:71224348-71224367 | None:intergenic | 60.0% |
GCCATCATCAACCCCACCCT+AGG | - | chr3_2:71224349-71224368 | Msa0422090:CDS | 60.0% | |
CCTCTCTGTTGTGCGGCTGA+GGG | + | chr3_2:71224861-71224880 | None:intergenic | 60.0% | |
CCCTCAGCCGCACAACAGAG+AGG | - | chr3_2:71224858-71224877 | Msa0422090:intron | 65.0% | |
GCCTCTCTGTTGTGCGGCTG+AGG | + | chr3_2:71224862-71224881 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 71223570 | 71226281 | 71223570 | ID=Msa0422090;Name=Msa0422090 |
chr3_2 | mRNA | 71223570 | 71226281 | 71223570 | ID=Msa0422090-mRNA-1;Parent=Msa0422090;Name=Msa0422090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|457 |
chr3_2 | exon | 71225972 | 71226281 | 71225972 | ID=Msa0422090-mRNA-1:exon:17370;Parent=Msa0422090-mRNA-1 |
chr3_2 | exon | 71223570 | 71224633 | 71223570 | ID=Msa0422090-mRNA-1:exon:17369;Parent=Msa0422090-mRNA-1 |
chr3_2 | CDS | 71225972 | 71226281 | 71225972 | ID=Msa0422090-mRNA-1:cds;Parent=Msa0422090-mRNA-1 |
chr3_2 | CDS | 71223570 | 71224633 | 71223570 | ID=Msa0422090-mRNA-1:cds;Parent=Msa0422090-mRNA-1 |
Gene Sequence |
Protein sequence |