AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422090 MtrunA17_Chr6g0488101 64.946 465 145 8 1 457 1 455 0.0 579
Msa0422090 MtrunA17_Chr6g0488271 65.632 419 132 7 47 457 1 415 0.0 528
Msa0422090 MtrunA17_Chr3g0122991 79.439 321 12 3 107 419 1 275 3.80e-177 496
Msa0422090 MtrunA17_Chr3g0112311 69.014 355 101 5 108 455 3 355 2.16e-169 480
Msa0422090 MtrunA17_Chr4g0075971 55.579 466 173 11 7 457 156 602 3.56e-161 468
Msa0422090 MtrunA17_Chr3g0077901 61.173 358 129 6 104 456 19 371 2.43e-143 414
Msa0422090 MtrunA17_Chr3g0077801 60.172 349 127 7 111 453 6 348 1.29e-139 404
Msa0422090 MtrunA17_Chr6g0452641 67.314 309 91 4 157 457 34 340 1.61e-139 404
Msa0422090 MtrunA17_Chr3g0077851 60.882 340 123 6 122 456 1 335 1.26e-133 388
Msa0422090 MtrunA17_Chr7g0252101 50.439 456 172 17 17 457 16 432 1.27e-125 371
Msa0422090 MtrunA17_Chr1g0207351 56.667 360 133 10 111 457 17 366 2.17e-117 348
Msa0422090 MtrunA17_Chr7g0243331 54.108 353 150 7 110 457 5 350 2.39e-114 340
Msa0422090 MtrunA17_Chr3g0093911 55.220 364 133 11 108 457 3 350 1.82e-113 337
Msa0422090 MtrunA17_Chr3g0123471 66.038 265 84 4 186 450 1 259 2.33e-109 323
Msa0422090 MtrunA17_Chr1g0209051 55.396 278 109 6 186 456 1 270 4.97e-86 264
Msa0422090 MtrunA17_Chr4g0075861 51.502 233 90 6 1 222 150 370 1.40e-58 197
Msa0422090 MtrunA17_Chr7g0243391 52.830 212 90 4 108 311 16 225 2.38e-55 184
Msa0422090 MtrunA17_Chr6g0486591 60.248 161 55 5 304 457 1 159 1.23e-53 177
Msa0422090 MtrunA17_Chr1g0202841 51.397 179 77 5 283 457 7 179 1.06e-50 170
Msa0422090 MtrunA17_Chr1g0196231 57.616 151 57 4 98 245 218 364 7.02e-45 160
Msa0422090 MtrunA17_Chr6g0486601 66.038 106 34 2 1 104 1 106 2.75e-41 142
Msa0422090 MtrunA17_Chr1g0187941 53.788 132 56 2 283 411 7 136 2.39e-35 128
Msa0422090 MtrunA17_Chr1g0206951 59.459 111 43 2 111 219 4 114 2.37e-33 122
Msa0422090 MtrunA17_Chr6g0459061 26.198 313 222 6 114 423 18 324 5.30e-25 105
Msa0422090 MtrunA17_Chr7g0238781 44.776 134 71 3 138 270 27 158 1.79e-24 99.4
Msa0422090 MtrunA17_Chr1g0196241 60.811 74 28 1 350 422 1 74 4.67e-23 92.8
Msa0422090 MtrunA17_Chr1g0209191 48.515 101 44 3 361 456 1 98 3.91e-19 82.4
Msa0422090 MtrunA17_Chr1g0209061 36.923 130 46 4 17 145 13 107 7.46e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGCATATGTATTTAATTT+TGG 0.076118 3_2:-71226053 Msa0422090:CDS
TTAAATACATATGCCCTTTA+AGG 0.116085 3_2:+71226059 None:intergenic
ACCATCTTTCTTCTTGTAAA+TGG 0.150870 3_2:+71224273 None:intergenic
TCTTGCACACACTACCAAAT+TGG 0.258446 3_2:+71224523 None:intergenic
GGGCATTTCATAAAATTTAT+TGG 0.268156 3_2:-71224494 Msa0422090:CDS
TTATGTCAAGTTGGAATCTT+TGG 0.282828 3_2:-71223836 Msa0422090:CDS
GGGTTTCTCCATGAAGTAAA+AGG 0.289430 3_2:-71226211 Msa0422090:CDS
TTTGGACAAGTAATGGTTCT+TGG 0.297479 3_2:+71224454 None:intergenic
CACAAAATCAGAGTGTATAA+AGG 0.303879 3_2:-71223706 Msa0422090:CDS
TTTGATGACCTCTTCCAATT+TGG 0.304325 3_2:-71224537 Msa0422090:CDS
CAGAGAATTGTGAGCTTCCT+TGG 0.308267 3_2:-71224593 Msa0422090:CDS
TTCCAACTTGACATAATTCA+TGG 0.322574 3_2:+71223843 None:intergenic
GTCATCAAAATCTATCATTC+TGG 0.330461 3_2:+71224551 None:intergenic
CATTCTTAACACGGGACCTT+TGG 0.330540 3_2:+71224436 None:intergenic
CTCAGAGGAATTTGTCTTGG+TGG 0.350287 3_2:-71224178 Msa0422090:CDS
ACAGAAGGTGGAATTAATTC+TGG 0.356713 3_2:+71223667 None:intergenic
GAAGTAAAAGGCTTGTTTCA+TGG 0.359706 3_2:-71226199 Msa0422090:CDS
ACAAAATCAGAGTGTATAAA+GGG 0.359913 3_2:-71223705 Msa0422090:CDS
AATTTATTGGAGGAATTTCA+TGG 0.361680 3_2:-71224481 Msa0422090:CDS
CCAGTTCTAAAATCTGGAAC+CGG 0.371531 3_2:-71226232 Msa0422090:CDS
GTCTATCAATCTCGAAATCT+TGG 0.381218 3_2:-71224126 Msa0422090:CDS
CTTGTCAGTGATAACATATA+TGG 0.392160 3_2:+71224047 None:intergenic
TGATCATGATGGATTGGAAT+TGG 0.396527 3_2:+71225992 None:intergenic
TTTCATAACCCCACATGCTT+GGG 0.397525 3_2:+71223761 None:intergenic
AAGGCTTGTTTCATGGCAAA+AGG 0.410150 3_2:-71226192 Msa0422090:CDS
CTTTGTTTGAATTCTTGAAC+TGG 0.411879 3_2:+71226094 None:intergenic
ACACTTCCAGTTCTAAAATC+TGG 0.417357 3_2:-71226238 Msa0422090:CDS
TATGTCAAGTTGGAATCTTT+GGG 0.417393 3_2:-71223835 Msa0422090:CDS
AGGGTGAATGAGGTCCTTAA+AGG 0.432093 3_2:-71226073 Msa0422090:CDS
AGCGGATATTTGATCATGAC+AGG 0.432124 3_2:-71224324 Msa0422090:CDS
TCCATTTACAAGAAGAAAGA+TGG 0.442051 3_2:-71224274 Msa0422090:CDS
ACATGAGGCATTATCGAATC+AGG 0.445618 3_2:-71226018 Msa0422090:CDS
TTGGTGAGATAAGCTGATAA+AGG 0.447533 3_2:+71224407 None:intergenic
AGAGAATTGTGAGCTTCCTT+GGG 0.456812 3_2:-71224592 Msa0422090:CDS
CAAAGGTCCCGTGTTAAGAA+TGG 0.463567 3_2:-71224435 Msa0422090:CDS
ATCAATCTCGAAATCTTGGT+TGG 0.466791 3_2:-71224122 Msa0422090:CDS
TTGGTAGTGTGTGCAAGAAT+TGG 0.479679 3_2:-71224518 Msa0422090:CDS
GGAACAACCCTACTTGTACT+TGG 0.481784 3_2:-71223620 Msa0422090:CDS
CGGGACCTTTGGACAAGTAA+TGG 0.484128 3_2:+71224447 None:intergenic
TCAATCTCGAAATCTTGGTT+GGG 0.489944 3_2:-71224121 Msa0422090:CDS
ATGCTGATTATGCATATGTA+AGG 0.493465 3_2:-71223948 Msa0422090:CDS
GGGTGAATGAGGTCCTTAAA+GGG 0.494064 3_2:-71226072 Msa0422090:CDS
TACTTATTCAACACCACATA+GGG 0.497231 3_2:-71224097 Msa0422090:CDS
AACCATGAATTATGTCAAGT+TGG 0.497832 3_2:-71223845 Msa0422090:CDS
AGGCTTGTTTCATGGCAAAA+GGG 0.501409 3_2:-71226191 Msa0422090:CDS
AGTTCAAGAATTCAAACAAA+GGG 0.501785 3_2:-71226092 Msa0422090:CDS
GGTTGTTCCGAGTCGGATGT+TGG 0.502946 3_2:+71223634 None:intergenic
GACCTAGTTGTTGATCATGA+TGG 0.505103 3_2:+71225981 None:intergenic
GTACAGATTAAACATTATGT+TGG 0.512395 3_2:+71223882 None:intergenic
ATCACTGACAAGGCCAACAT+TGG 0.512601 3_2:-71224036 Msa0422090:CDS
CAGTTCTAAAATCTGGAACC+GGG 0.514932 3_2:-71226231 Msa0422090:CDS
TTTAAAGTTGATTACTCCTG+TGG 0.517486 3_2:-71224234 Msa0422090:CDS
AACCCTACTTGTACTTGGAC+TGG 0.517501 3_2:-71223615 Msa0422090:CDS
GACTCCATGTTCGTTTGCCA+TGG 0.517527 3_2:+71226261 None:intergenic
TCCGCTAGAAGACCCATGAT+AGG 0.521743 3_2:+71224341 None:intergenic
TAAGACATGGCAAGAACCAC+AGG 0.524722 3_2:+71224218 None:intergenic
AGTTGTTGATCATGATGGAT+TGG 0.527383 3_2:+71225986 None:intergenic
GCCTCCATGGCAAACGAACA+TGG 0.527596 3_2:-71226265 None:intergenic
AGGCTCAGAGGAATTTGTCT+TGG 0.528013 3_2:-71224181 Msa0422090:CDS
GCCTATCATGGGTCTTCTAG+CGG 0.531172 3_2:-71224342 Msa0422090:CDS
ATTCAAACAAAGGGTGAATG+AGG 0.537107 3_2:-71226083 Msa0422090:CDS
AAAAGTTTATCACTCAAAGA+TGG 0.550583 3_2:-71224385 Msa0422090:CDS
TGATTATGCATATGTAAGGT+TGG 0.550918 3_2:-71223944 Msa0422090:CDS
CATTTCATAAAATTTATTGG+AGG 0.553532 3_2:-71224491 Msa0422090:CDS
TTACTTATTCAACACCACAT+AGG 0.554579 3_2:-71224098 Msa0422090:CDS
CAAACTGAGTATCCCAATGT+TGG 0.558277 3_2:+71224023 None:intergenic
TCACTGACAAGGCCAACATT+GGG 0.559813 3_2:-71224035 Msa0422090:CDS
ACACCAGTCCAAGTACAAGT+AGG 0.564649 3_2:+71223612 None:intergenic
CAAGTAGGGTTGTTCCGAGT+CGG 0.572575 3_2:+71223627 None:intergenic
CACCAGTCCAAGTACAAGTA+GGG 0.572999 3_2:+71223613 None:intergenic
CATTGAACAACCCAAGCATG+TGG 0.574764 3_2:-71223771 Msa0422090:CDS
ACAAAATCAACAACCCTATG+TGG 0.580187 3_2:+71224084 None:intergenic
GTAGTGTGTGCAAGAATTGG+CGG 0.595582 3_2:-71224515 Msa0422090:CDS
CAGTTCAAGAATTCAAACAA+AGG 0.597402 3_2:-71226093 Msa0422090:CDS
ATGATATCTAACAAATCCCA+AGG 0.602002 3_2:+71224576 None:intergenic
TGGGATTCAACGACTACATG+AGG 0.603464 3_2:-71226033 Msa0422090:CDS
AAGAACCATTACTTGTCCAA+AGG 0.610806 3_2:-71224452 Msa0422090:CDS
CAACAACTAGGTCATAAGAC+TGG 0.619673 3_2:-71225971 Msa0422090:intron
TTGAACAACCCAAGCATGTG+GGG 0.628995 3_2:-71223769 Msa0422090:CDS
ATTGAACAACCCAAGCATGT+GGG 0.631550 3_2:-71223770 Msa0422090:CDS
ACACACTACCAAATTGGAAG+AGG 0.631572 3_2:+71224529 None:intergenic
TAGTGTGTGCAAGAATTGGC+GGG 0.631650 3_2:-71224514 Msa0422090:CDS
GTTGGTTCGATAAGTACAGA+AGG 0.637789 3_2:+71223652 None:intergenic
TAATCAGCATAAGTTACACT+AGG 0.639591 3_2:+71223961 None:intergenic
CATATATGTTATCACTGACA+AGG 0.643115 3_2:-71224046 Msa0422090:CDS
TATCGAACCAACATCCGACT+CGG 0.648262 3_2:-71223641 Msa0422090:CDS
GGTTCGATAAGTACAGAAGG+TGG 0.650996 3_2:+71223655 None:intergenic
CAAAATCAGAGTGTATAAAG+GGG 0.656169 3_2:-71223704 Msa0422090:CDS
ATCCATCATGATCAACAACT+AGG 0.666444 3_2:-71225983 Msa0422090:CDS
GCGGATATTTGATCATGACA+GGG 0.702617 3_2:-71224323 Msa0422090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTTATAAATGGGTT+TGG - chr3_2:71223945-71223964 Msa0422090:CDS 15.0%
!! TTGCACAAATATTTATATAA+AGG + chr3_2:71224164-71224183 None:intergenic 15.0%
!! TTAAACCATTTAAAAAAAAC+AGG + chr3_2:71225129-71225148 None:intergenic 15.0%
!!! TTTTTAAATGGTTTAATGTT+TGG - chr3_2:71225133-71225152 Msa0422090:intron 15.0%
!! TAAAATTATCAACAAATGTG+AGG + chr3_2:71223923-71223942 None:intergenic 20.0%
!! TGTGTTCATAACAAATAAAA+AGG - chr3_2:71224084-71224103 Msa0422090:CDS 20.0%
!! TTCTTGTAAAAGTTATAAGA+AGG + chr3_2:71224222-71224241 None:intergenic 20.0%
!! AAAATCATTAAAATCCAGTT+AGG - chr3_2:71224245-71224264 Msa0422090:CDS 20.0%
!!! AATATCATAATTTGCATGTT+TGG + chr3_2:71224406-71224425 None:intergenic 20.0%
!!! GAATTACATTGTTTAGTTTT+CGG - chr3_2:71224513-71224532 Msa0422090:CDS 20.0%
!!! TTACTCCTGTTTTTTTTAAA+TGG - chr3_2:71225121-71225140 Msa0422090:intron 20.0%
!! CATTTCATAAAATTTATTGG+AGG - chr3_2:71225338-71225357 Msa0422090:intron 20.0%
!!! GATTTTGTGAATTACATTAT+TGG + chr3_2:71226112-71226131 None:intergenic 20.0%
! AGTTCAAGAATTCAAACAAA+GGG - chr3_2:71223737-71223756 Msa0422090:CDS 25.0%
! TTAAATACATATGCCCTTTA+AGG + chr3_2:71223773-71223792 None:intergenic 25.0%
!!! AGGGCATATGTATTTAATTT+TGG - chr3_2:71223776-71223795 Msa0422090:CDS 25.0%
!!! GGGCATATGTATTTAATTTT+GGG - chr3_2:71223777-71223796 Msa0422090:CDS 25.0%
! CTCAAATAGACAATTACAAA+CGG + chr3_2:71224000-71224019 None:intergenic 25.0%
! TGTAAAAGTTATAAGAAGGA+AGG + chr3_2:71224218-71224237 None:intergenic 25.0%
!!! GACTCTATTTAGTTTGAATT+GGG - chr3_2:71224371-71224390 Msa0422090:CDS 25.0%
! GTAAATATAGTTTACCTTGT+GGG + chr3_2:71224445-71224464 None:intergenic 25.0%
! CTATATTTACCTCTACAATT+AGG - chr3_2:71224455-71224474 Msa0422090:CDS 25.0%
!!! TGGAGTTTTTAGTTTGTATT+GGG + chr3_2:71224717-71224736 None:intergenic 25.0%
!!! ATGGAGTTTTTAGTTTGTAT+TGG + chr3_2:71224718-71224737 None:intergenic 25.0%
! TTTCCATTTGAGTATGAAAA+TGG - chr3_2:71224985-71225004 Msa0422090:intron 25.0%
! TTCCATTTGAGTATGAAAAT+GGG - chr3_2:71224986-71225005 Msa0422090:intron 25.0%
! GAAAATGGGTATTTATTGTT+TGG - chr3_2:71225000-71225019 Msa0422090:intron 25.0%
! ATACAAAGGGAAAAAAATGA+AGG - chr3_2:71225210-71225229 Msa0422090:intron 25.0%
! GGGCATTTCATAAAATTTAT+TGG - chr3_2:71225335-71225354 Msa0422090:intron 25.0%
! AATTTATTGGAGGAATTTCA+TGG - chr3_2:71225348-71225367 Msa0422090:intron 25.0%
!! TCTTTGAGTGATAAACTTTT+TGG + chr3_2:71225444-71225463 None:intergenic 25.0%
! AAAAGTTTATCACTCAAAGA+TGG - chr3_2:71225444-71225463 Msa0422090:intron 25.0%
! GTACAGATTAAACATTATGT+TGG + chr3_2:71225950-71225969 None:intergenic 25.0%
! ACAAAATCAGAGTGTATAAA+GGG - chr3_2:71226124-71226143 Msa0422090:CDS 25.0%
! CTTTGTTTGAATTCTTGAAC+TGG + chr3_2:71223738-71223757 None:intergenic 30.0%
CAGTTCAAGAATTCAAACAA+AGG - chr3_2:71223736-71223755 Msa0422090:CDS 30.0%
TAAAAACATGAAGTCTGAGT+AGG + chr3_2:71224120-71224139 None:intergenic 30.0%
! TACTCAGACTTCATGTTTTT+AGG - chr3_2:71224119-71224138 Msa0422090:CDS 30.0%
! TGATGATTGCTGTTAAAACA+AGG - chr3_2:71224189-71224208 Msa0422090:CDS 30.0%
AATCTAACTGAATTCCTAAC+TGG + chr3_2:71224262-71224281 None:intergenic 30.0%
TTAGTATTCCCCAACATTTA+TGG - chr3_2:71224290-71224309 Msa0422090:CDS 30.0%
ACAACATCACCATAAATGTT+GGG + chr3_2:71224302-71224321 None:intergenic 30.0%
AACAACATCACCATAAATGT+TGG + chr3_2:71224303-71224322 None:intergenic 30.0%
TCAAACTAAATAGAGTCCTA+GGG + chr3_2:71224368-71224387 None:intergenic 30.0%
TTCAAACTAAATAGAGTCCT+AGG + chr3_2:71224369-71224388 None:intergenic 30.0%
!! GGACTCTATTTAGTTTGAAT+TGG - chr3_2:71224370-71224389 Msa0422090:CDS 30.0%
TATGATATTGCCACTCTAAT+TGG - chr3_2:71224417-71224436 Msa0422090:CDS 30.0%
GGTAAATATAGTTTACCTTG+TGG + chr3_2:71224446-71224465 None:intergenic 30.0%
AACAAACATCCTAATTGTAG+AGG + chr3_2:71224467-71224486 None:intergenic 30.0%
!!! GTTGTTTTGTTTCTGATTCA+TGG + chr3_2:71224631-71224650 None:intergenic 30.0%
! CAACTTTTATAGCTTTCGTA+GGG + chr3_2:71224919-71224938 None:intergenic 30.0%
GAAATTAACAATGTAGCATC+CGG + chr3_2:71224969-71224988 None:intergenic 30.0%
! TACCCATTTTCATACTCAAA+TGG + chr3_2:71224991-71225010 None:intergenic 30.0%
CATAGTTATGTTGCTGTAAA+AGG - chr3_2:71225023-71225042 Msa0422090:intron 30.0%
!! TGTCATTTGTTGTGATACAA+AGG - chr3_2:71225196-71225215 Msa0422090:intron 30.0%
!! GTCATTTGTTGTGATACAAA+GGG - chr3_2:71225197-71225216 Msa0422090:intron 30.0%
ATGATATCTAACAAATCCCA+AGG + chr3_2:71225256-71225275 None:intergenic 30.0%
GTCATCAAAATCTATCATTC+TGG + chr3_2:71225281-71225300 None:intergenic 30.0%
AGGAAAAACCATTCTTAACA+CGG + chr3_2:71225405-71225424 None:intergenic 30.0%
TCCATTTACAAGAAGAAAGA+TGG - chr3_2:71225555-71225574 Msa0422090:intron 30.0%
ACCATCTTTCTTCTTGTAAA+TGG + chr3_2:71225559-71225578 None:intergenic 30.0%
! TTTAAAGTTGATTACTCCTG+TGG - chr3_2:71225595-71225614 Msa0422090:intron 30.0%
TGTAAAAAGCAAGTAAGACA+TGG + chr3_2:71225627-71225646 None:intergenic 30.0%
TTACTTATTCAACACCACAT+AGG - chr3_2:71225731-71225750 Msa0422090:intron 30.0%
TACTTATTCAACACCACATA+GGG - chr3_2:71225732-71225751 Msa0422090:intron 30.0%
CTTGTCAGTGATAACATATA+TGG + chr3_2:71225785-71225804 None:intergenic 30.0%
CATATATGTTATCACTGACA+AGG - chr3_2:71225783-71225802 Msa0422090:intron 30.0%
TAATCAGCATAAGTTACACT+AGG + chr3_2:71225871-71225890 None:intergenic 30.0%
! ATGCTGATTATGCATATGTA+AGG - chr3_2:71225881-71225900 Msa0422090:intron 30.0%
TGATTATGCATATGTAAGGT+TGG - chr3_2:71225885-71225904 Msa0422090:intron 30.0%
AACCATGAATTATGTCAAGT+TGG - chr3_2:71225984-71226003 Msa0422090:CDS 30.0%
TTCCAACTTGACATAATTCA+TGG + chr3_2:71225989-71226008 None:intergenic 30.0%
!! TTATGTCAAGTTGGAATCTT+TGG - chr3_2:71225993-71226012 Msa0422090:CDS 30.0%
!! TATGTCAAGTTGGAATCTTT+GGG - chr3_2:71225994-71226013 Msa0422090:CDS 30.0%
CACAAAATCAGAGTGTATAA+AGG - chr3_2:71226123-71226142 Msa0422090:CDS 30.0%
CAAAATCAGAGTGTATAAAG+GGG - chr3_2:71226125-71226144 Msa0422090:CDS 30.0%
!! ACACTTCCAGTTCTAAAATC+TGG - chr3_2:71223591-71223610 Msa0422090:CDS 35.0%
! TTTTACTTCATGGAGAAACC+CGG + chr3_2:71223619-71223638 None:intergenic 35.0%
! GAAACAAGCCTTTTACTTCA+TGG + chr3_2:71223629-71223648 None:intergenic 35.0%
! GAAGTAAAAGGCTTGTTTCA+TGG - chr3_2:71223630-71223649 Msa0422090:CDS 35.0%
ATTCAAACAAAGGGTGAATG+AGG - chr3_2:71223746-71223765 Msa0422090:CDS 35.0%
!! TGATCATGATGGATTGGAAT+TGG + chr3_2:71223840-71223859 None:intergenic 35.0%
!! AGTTGTTGATCATGATGGAT+TGG + chr3_2:71223846-71223865 None:intergenic 35.0%
ATCCATCATGATCAACAACT+AGG - chr3_2:71223846-71223865 Msa0422090:CDS 35.0%
!!! CAGACTTCATGTTTTTAGGT+TGG - chr3_2:71224123-71224142 Msa0422090:CDS 35.0%
CAACATCACCATAAATGTTG+GGG + chr3_2:71224301-71224320 None:intergenic 35.0%
! CATTTATGGTGATGTTGTTG+AGG - chr3_2:71224304-71224323 Msa0422090:CDS 35.0%
!!! GGCTATTTGTTTTGGTGTAT+CGG + chr3_2:71224679-71224698 None:intergenic 35.0%
!!! GTTTTGTTTCTGGTGTGTTT+TGG + chr3_2:71224770-71224789 None:intergenic 35.0%
!!! CAGTATTCGTGTTTTGTTTC+TGG + chr3_2:71224780-71224799 None:intergenic 35.0%
! GCAACTTTTATAGCTTTCGT+AGG + chr3_2:71224920-71224939 None:intergenic 35.0%
TCACAACAAATGACAGTGTT+AGG + chr3_2:71225191-71225210 None:intergenic 35.0%
! TTTGATGACCTCTTCCAATT+TGG - chr3_2:71225292-71225311 Msa0422090:intron 35.0%
TTTGGACAAGTAATGGTTCT+TGG + chr3_2:71225378-71225397 None:intergenic 35.0%
AAGAACCATTACTTGTCCAA+AGG - chr3_2:71225377-71225396 Msa0422090:intron 35.0%
GGAAAAACCATTCTTAACAC+GGG + chr3_2:71225404-71225423 None:intergenic 35.0%
TTGGTGAGATAAGCTGATAA+AGG + chr3_2:71225425-71225444 None:intergenic 35.0%
GGCAAAAATGACGAAGTTAT+TGG + chr3_2:71225470-71225489 None:intergenic 35.0%
!!! TTCGTCATTTTTGCCTATCA+TGG - chr3_2:71225475-71225494 Msa0422090:intron 35.0%
!!! TCGTCATTTTTGCCTATCAT+GGG - chr3_2:71225476-71225495 Msa0422090:intron 35.0%
!!! GTCTTACTTGCTTTTTACAG+AGG - chr3_2:71225628-71225647 Msa0422090:intron 35.0%
GTCTATCAATCTCGAAATCT+TGG - chr3_2:71225703-71225722 Msa0422090:intron 35.0%
ATCAATCTCGAAATCTTGGT+TGG - chr3_2:71225707-71225726 Msa0422090:intron 35.0%
TCAATCTCGAAATCTTGGTT+GGG - chr3_2:71225708-71225727 Msa0422090:intron 35.0%
ACAAAATCAACAACCCTATG+TGG + chr3_2:71225748-71225767 None:intergenic 35.0%
ACAGAAGGTGGAATTAATTC+TGG + chr3_2:71226165-71226184 None:intergenic 35.0%
!! CCAGTTCTAAAATCTGGAAC+CGG - chr3_2:71223597-71223616 Msa0422090:CDS 40.0%
!! CAGTTCTAAAATCTGGAACC+GGG - chr3_2:71223598-71223617 Msa0422090:CDS 40.0%
GGGTTTCTCCATGAAGTAAA+AGG - chr3_2:71223618-71223637 Msa0422090:CDS 40.0%
! AAGGCTTGTTTCATGGCAAA+AGG - chr3_2:71223637-71223656 Msa0422090:CDS 40.0%
! AGGCTTGTTTCATGGCAAAA+GGG - chr3_2:71223638-71223657 Msa0422090:CDS 40.0%
! ACATGAGGCATTATCGAATC+AGG - chr3_2:71223811-71223830 Msa0422090:CDS 40.0%
GACCTAGTTGTTGATCATGA+TGG + chr3_2:71223851-71223870 None:intergenic 40.0%
CAACAACTAGGTCATAAGAC+TGG - chr3_2:71223858-71223877 Msa0422090:CDS 40.0%
ACTAAATAGAGTCCTAGGGT+GGG + chr3_2:71224364-71224383 None:intergenic 40.0%
AACTAAATAGAGTCCTAGGG+TGG + chr3_2:71224365-71224384 None:intergenic 40.0%
ACAGATTACAACACCGACAA+AGG - chr3_2:71224651-71224670 Msa0422090:intron 40.0%
TATTGGGTTATGCTTTGCCT+GGG + chr3_2:71224701-71224720 None:intergenic 40.0%
! CTGTTCAGTGGTAGCAATTT+TGG + chr3_2:71224807-71224826 None:intergenic 40.0%
!!! TGTGCTGATTTTCTGTTCAG+TGG + chr3_2:71224819-71224838 None:intergenic 40.0%
!!! GCGTTTTTGTGTTACTTTGG+TGG + chr3_2:71224884-71224903 None:intergenic 40.0%
!!! GGTGCGTTTTTGTGTTACTT+TGG + chr3_2:71224887-71224906 None:intergenic 40.0%
! GCTTTCGTAGGGATGTATTT+TGG + chr3_2:71224908-71224927 None:intergenic 40.0%
!!! AGGTGTTTGCTGTGATTTTG+AGG - chr3_2:71225043-71225062 Msa0422090:intron 40.0%
!!! TGTTTGCTGTGATTTTGAGG+TGG - chr3_2:71225046-71225065 Msa0422090:intron 40.0%
!!! GTTTGCTGTGATTTTGAGGT+GGG - chr3_2:71225047-71225066 Msa0422090:intron 40.0%
! TTCTGTCTGTGATGGAGTAT+GGG - chr3_2:71225080-71225099 Msa0422090:intron 40.0%
AGAGAATTGTGAGCTTCCTT+GGG - chr3_2:71225237-71225256 Msa0422090:intron 40.0%
ACACACTACCAAATTGGAAG+AGG + chr3_2:71225303-71225322 None:intergenic 40.0%
TCTTGCACACACTACCAAAT+TGG + chr3_2:71225309-71225328 None:intergenic 40.0%
!! TTGGTAGTGTGTGCAAGAAT+TGG - chr3_2:71225311-71225330 Msa0422090:intron 40.0%
AGCGGATATTTGATCATGAC+AGG - chr3_2:71225505-71225524 Msa0422090:intron 40.0%
GCGGATATTTGATCATGACA+GGG - chr3_2:71225506-71225525 Msa0422090:intron 40.0%
CAAACTGAGTATCCCAATGT+TGG + chr3_2:71225809-71225828 None:intergenic 40.0%
ATTGAACAACCCAAGCATGT+GGG - chr3_2:71226059-71226078 Msa0422090:CDS 40.0%
TTTCATAACCCCACATGCTT+GGG + chr3_2:71226071-71226090 None:intergenic 40.0%
! TTTTCATAACCCCACATGCT+TGG + chr3_2:71226072-71226091 None:intergenic 40.0%
!! GTTGGTTCGATAAGTACAGA+AGG + chr3_2:71226180-71226199 None:intergenic 40.0%
!!! CCGGTTCCAGATTTTAGAAC+TGG + chr3_2:71223600-71223619 None:intergenic 45.0%
AGGGTGAATGAGGTCCTTAA+AGG - chr3_2:71223756-71223775 Msa0422090:CDS 45.0%
GGGTGAATGAGGTCCTTAAA+GGG - chr3_2:71223757-71223776 Msa0422090:CDS 45.0%
TGGGATTCAACGACTACATG+AGG - chr3_2:71223796-71223815 Msa0422090:CDS 45.0%
!! GTTGATGATGGCAAGGGTTT+AGG + chr3_2:71224341-71224360 None:intergenic 45.0%
CTAAATAGAGTCCTAGGGTG+GGG + chr3_2:71224363-71224382 None:intergenic 45.0%
ATCCAAACACAACGCGAACT+CGG - chr3_2:71224559-71224578 Msa0422090:CDS 45.0%
! AGCACGTGTTTTCGGATTTG+TGG + chr3_2:71224599-71224618 None:intergenic 45.0%
CAAATCCGAAAACACGTGCT+AGG - chr3_2:71224599-71224618 Msa0422090:CDS 45.0%
! TGCTACCTAGCACGTGTTTT+CGG + chr3_2:71224607-71224626 None:intergenic 45.0%
!! TGGTGTATCGGTTCCTTTGT+CGG + chr3_2:71224667-71224686 None:intergenic 45.0%
ACACCAAAACAAATAGCCCC+AGG - chr3_2:71224681-71224700 Msa0422090:intron 45.0%
! TTGCCTGGGGCTATTTGTTT+TGG + chr3_2:71224687-71224706 None:intergenic 45.0%
ATTGGGTTATGCTTTGCCTG+GGG + chr3_2:71224700-71224719 None:intergenic 45.0%
GTATTGGGTTATGCTTTGCC+TGG + chr3_2:71224702-71224721 None:intergenic 45.0%
GGTTCATCTTAGCACTCTGA+TGG + chr3_2:71224737-71224756 None:intergenic 45.0%
!!! TGTTTCTGGTGTGTTTTGGC+TGG + chr3_2:71224766-71224785 None:intergenic 45.0%
TGCCTAAACCAGAATTGCAC+CGG - chr3_2:71224947-71224966 Msa0422090:intron 45.0%
!! ATCCGGTGCAATTCTGGTTT+AGG + chr3_2:71224952-71224971 None:intergenic 45.0%
! GTTCTGTCTGTGATGGAGTA+TGG - chr3_2:71225079-71225098 Msa0422090:intron 45.0%
! TCTGTCTGTGATGGAGTATG+GGG - chr3_2:71225081-71225100 Msa0422090:intron 45.0%
!! TGTGATGGAGTATGGGGTTT+TGG - chr3_2:71225087-71225106 Msa0422090:intron 45.0%
CAGAGAATTGTGAGCTTCCT+TGG - chr3_2:71225236-71225255 Msa0422090:intron 45.0%
GTAGTGTGTGCAAGAATTGG+CGG - chr3_2:71225314-71225333 Msa0422090:intron 45.0%
TAGTGTGTGCAAGAATTGGC+GGG - chr3_2:71225315-71225334 Msa0422090:intron 45.0%
CATTCTTAACACGGGACCTT+TGG + chr3_2:71225396-71225415 None:intergenic 45.0%
CAAAGGTCCCGTGTTAAGAA+TGG - chr3_2:71225394-71225413 Msa0422090:intron 45.0%
TAAGACATGGCAAGAACCAC+AGG + chr3_2:71225614-71225633 None:intergenic 45.0%
!! TGCTTTTTACAGAGGCTCAG+AGG - chr3_2:71225636-71225655 Msa0422090:intron 45.0%
AGGCTCAGAGGAATTTGTCT+TGG - chr3_2:71225648-71225667 Msa0422090:intron 45.0%
CTCAGAGGAATTTGTCTTGG+TGG - chr3_2:71225651-71225670 Msa0422090:intron 45.0%
ATCACTGACAAGGCCAACAT+TGG - chr3_2:71225793-71225812 Msa0422090:intron 45.0%
TCACTGACAAGGCCAACATT+GGG - chr3_2:71225794-71225813 Msa0422090:intron 45.0%
CATTGAACAACCCAAGCATG+TGG - chr3_2:71226058-71226077 Msa0422090:CDS 45.0%
TTGAACAACCCAAGCATGTG+GGG - chr3_2:71226060-71226079 Msa0422090:CDS 45.0%
GGTTCGATAAGTACAGAAGG+TGG + chr3_2:71226177-71226196 None:intergenic 45.0%
TATCGAACCAACATCCGACT+CGG - chr3_2:71226188-71226207 Msa0422090:CDS 45.0%
GGAACAACCCTACTTGTACT+TGG - chr3_2:71226209-71226228 Msa0422090:CDS 45.0%
AACCCTACTTGTACTTGGAC+TGG - chr3_2:71226214-71226233 Msa0422090:CDS 45.0%
CACCAGTCCAAGTACAAGTA+GGG + chr3_2:71226219-71226238 None:intergenic 45.0%
ACACCAGTCCAAGTACAAGT+AGG + chr3_2:71226220-71226239 None:intergenic 45.0%
!!! TTTACTATATATTTTATAAA+TGG - chr3_2:71223939-71223958 Msa0422090:CDS 5.0%
!!! TTACTATATATTTTATAAAT+GGG - chr3_2:71223940-71223959 Msa0422090:CDS 5.0%
CTTGTGGGAGCCAATTAGAG+TGG + chr3_2:71224430-71224449 None:intergenic 50.0%
! CACTCTAATTGGCTCCCACA+AGG - chr3_2:71224428-71224447 Msa0422090:CDS 50.0%
TTCCGAGTTCGCGTTGTGTT+TGG + chr3_2:71224564-71224583 None:intergenic 50.0%
ACACAACGCGAACTCGGAAT+TGG - chr3_2:71224565-71224584 Msa0422090:CDS 50.0%
! CAGAGTGCTAAGATGAACCG+AGG - chr3_2:71224738-71224757 Msa0422090:intron 50.0%
!!! CTGAGGGCTAGTTTTTCTGC+AGG + chr3_2:71224845-71224864 None:intergenic 50.0%
TGTAGCATCCGGTGCAATTC+TGG + chr3_2:71224958-71224977 None:intergenic 50.0%
!!! TGCTGTGATTTTGAGGTGGG+AGG - chr3_2:71225050-71225069 Msa0422090:intron 50.0%
!!! GCTGTGATTTTGAGGTGGGA+GGG - chr3_2:71225051-71225070 Msa0422090:intron 50.0%
!!! CTGTGATTTTGAGGTGGGAG+GGG - chr3_2:71225052-71225071 Msa0422090:intron 50.0%
CGGGACCTTTGGACAAGTAA+TGG + chr3_2:71225385-71225404 None:intergenic 50.0%
GCCTATCATGGGTCTTCTAG+CGG - chr3_2:71225487-71225506 Msa0422090:intron 50.0%
TCCGCTAGAAGACCCATGAT+AGG + chr3_2:71225491-71225510 None:intergenic 50.0%
CAAGTAGGGTTGTTCCGAGT+CGG + chr3_2:71226205-71226224 None:intergenic 50.0%
!! GGTGGGGTTGATGATGGCAA+GGG + chr3_2:71224347-71224366 None:intergenic 55.0%
!! TCCTAGGGTGGGGTTGATGA+TGG + chr3_2:71224353-71224372 None:intergenic 55.0%
!!! GTGTGTTTTGGCTGGTGCCT+CGG + chr3_2:71224758-71224777 None:intergenic 55.0%
! TTGGTGGCCTCTCTGTTGTG+CGG + chr3_2:71224868-71224887 None:intergenic 55.0%
!!! ATTTTGAGGTGGGAGGGGCT+TGG - chr3_2:71225057-71225076 Msa0422090:intron 55.0%
!! GGGCTTGGTTCTGTCTGTGA+TGG - chr3_2:71225072-71225091 Msa0422090:intron 55.0%
GGTTGTTCCGAGTCGGATGT+TGG + chr3_2:71226198-71226217 None:intergenic 55.0%
!! GGGTGGGGTTGATGATGGCA+AGG + chr3_2:71224348-71224367 None:intergenic 60.0%
GCCATCATCAACCCCACCCT+AGG - chr3_2:71224349-71224368 Msa0422090:CDS 60.0%
CCTCTCTGTTGTGCGGCTGA+GGG + chr3_2:71224861-71224880 None:intergenic 60.0%
CCCTCAGCCGCACAACAGAG+AGG - chr3_2:71224858-71224877 Msa0422090:intron 65.0%
GCCTCTCTGTTGTGCGGCTG+AGG + chr3_2:71224862-71224881 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 71223570 71226281 71223570 ID=Msa0422090;Name=Msa0422090
chr3_2 mRNA 71223570 71226281 71223570 ID=Msa0422090-mRNA-1;Parent=Msa0422090;Name=Msa0422090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|457
chr3_2 exon 71225972 71226281 71225972 ID=Msa0422090-mRNA-1:exon:17370;Parent=Msa0422090-mRNA-1
chr3_2 exon 71223570 71224633 71223570 ID=Msa0422090-mRNA-1:exon:17369;Parent=Msa0422090-mRNA-1
chr3_2 CDS 71225972 71226281 71225972 ID=Msa0422090-mRNA-1:cds;Parent=Msa0422090-mRNA-1
chr3_2 CDS 71223570 71224633 71223570 ID=Msa0422090-mRNA-1:cds;Parent=Msa0422090-mRNA-1
Gene Sequence

>Msa0422090

ATGGCAAACGAACATGGAGTCACACTTCCAGTTCTAAAATCTGGAACCGGGTTTCTCCATGAAGTAAAAGGCTTGTTTCATGGCAAAAGGGAAGAATATGATAAGTTTGTAAAAGACATAGATGATTTCAAGAGATGCATGAATGATCATCATCGAGTCAGACTTCCAGTTCAAGAATTCAAACAAAGGGTGAATGAGGTCCTTAAAGGGCATATGTATTTAATTTTGGGATTCAACGACTACATGAGGCATTATCGAATCAGGCTTCCAATTCCAATCCATCATGATCAACAACTAGGTCATAAGACTGGGAAAAAAATGAAGGCAGCAGAGAATTGTGAGCTTCCTTGGGATTTGTTAGATATCATTTCCAGAATGATAGATTTTGATGACCTCTTCCAATTTGGTAGTGTGTGCAAGAATTGGCGGGCATTTCATAAAATTTATTGGAGGAATTTCATGGCATTCCAAGAACCATTACTTGTCCAAAGGTCCCGTGTTAAGAATGGTTTTTCCTTTATCAGCTTATCTCACCAAAAAGTTTATCACTCAAAGATGGCCAATAACTTCGTCATTTTTGCCTATCATGGGTCTTCTAGCGGATATTTGATCATGACAGGGAAAAATAATTCATTTATACTAATTAATCCATTTACAAGAAGAAAGATGGTAATTAATAATTCAGTCTTTAAAGTTGATTACTCCTGTGGTTCTTGCCATGTCTTACTTGCTTTTTACAGAGGCTCAGAGGAATTTGTCTTGGTGGTTTTATGTAGAAGTTCTAACAATTTGCATGTCTATCAATCTCGAAATCTTGGTTGGGTTACTTATTCAACACCACATAGGGTTGTTGATTTTGTTGTTTTGCACAATACCATATATGTTATCACTGACAAGGCCAACATTGGGATACTCAGTTTGAATTCTGCAAATATAAACTTTTTAGATCTGAAGAGTACTCCTAGTGTAACTTATGCTGATTATGCATATGTAAGGTTGGTTAGTTGTGATGAACATCTTTTAGTGCTAAATTTTACGTCCAACATAATGTTTAATCTGTACAAGATAGACTTCTCAACCATGAATTATGTCAAGTTGGAATCTTTGGGTGACATTGCATTATTTCATGCTTCGAAGAAAAAGTACTATGCATTGAACAACCCAAGCATGTGGGGTTATGAAAACAATTCTGTGTATGTCACCAATAATGTAATTCACAAAATCAGAGTGTATAAAGGGGATGACAATAAAATGCCAGAATTAATTCCACCTTCTGTACTTATCGAACCAACATCCGACTCGGAACAACCCTACTTGTACTTGGACTGGTGTTTTAGACATCTAAACTATGTAGATTATTGTCTTGTTGAGTAG

Protein sequence

>Msa0422090

MANEHGVTLPVLKSGTGFLHEVKGLFHGKREEYDKFVKDIDDFKRCMNDHHRVRLPVQEFKQRVNEVLKGHMYLILGFNDYMRHYRIRLPIPIHHDQQLGHKTGKKMKAAENCELPWDLLDIISRMIDFDDLFQFGSVCKNWRAFHKIYWRNFMAFQEPLLVQRSRVKNGFSFISLSHQKVYHSKMANNFVIFAYHGSSSGYLIMTGKNNSFILINPFTRRKMVINNSVFKVDYSCGSCHVLLAFYRGSEEFVLVVLCRSSNNLHVYQSRNLGWVTYSTPHRVVDFVVLHNTIYVITDKANIGILSLNSANINFLDLKSTPSVTYADYAYVRLVSCDEHLLVLNFTSNIMFNLYKIDFSTMNYVKLESLGDIALFHASKKKYYALNNPSMWGYENNSVYVTNNVIHKIRVYKGDDNKMPELIPPSVLIEPTSDSEQPYLYLDWCFRHLNYVDYCLVE*