Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468680 | XP_003620884.1 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468680 | G7KJ84 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422090 | Msa0468680 | 0.891742 | 3.007304e-74 | -8.615850e-47 |
| Msa0468680 | Msa0514560 | 0.840607 | 7.852207e-58 | -8.615850e-47 |
| Msa0468680 | Msa1419690 | 0.803788 | 2.949495e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468680 | MtrunA17_Chr6g0488101 | 64.946 | 465 | 145 | 8 | 1 | 457 | 1 | 455 | 0.0 | 579 |
| Msa0468680 | MtrunA17_Chr6g0488271 | 65.632 | 419 | 132 | 7 | 47 | 457 | 1 | 415 | 0.0 | 527 |
| Msa0468680 | MtrunA17_Chr3g0122991 | 79.439 | 321 | 12 | 3 | 107 | 419 | 1 | 275 | 4.99e-177 | 496 |
| Msa0468680 | MtrunA17_Chr3g0112311 | 69.014 | 355 | 101 | 5 | 108 | 455 | 3 | 355 | 2.41e-169 | 480 |
| Msa0468680 | MtrunA17_Chr4g0075971 | 55.365 | 466 | 174 | 11 | 7 | 457 | 156 | 602 | 1.63e-160 | 466 |
| Msa0468680 | MtrunA17_Chr3g0077901 | 60.894 | 358 | 130 | 6 | 104 | 456 | 19 | 371 | 1.22e-142 | 412 |
| Msa0468680 | MtrunA17_Chr6g0452641 | 67.314 | 309 | 91 | 4 | 157 | 457 | 34 | 340 | 2.78e-139 | 403 |
| Msa0468680 | MtrunA17_Chr3g0077801 | 59.885 | 349 | 128 | 7 | 111 | 453 | 6 | 348 | 7.04e-139 | 402 |
| Msa0468680 | MtrunA17_Chr3g0077851 | 60.588 | 340 | 124 | 6 | 122 | 456 | 1 | 335 | 4.85e-133 | 387 |
| Msa0468680 | MtrunA17_Chr7g0252101 | 50.554 | 451 | 179 | 16 | 17 | 457 | 16 | 432 | 2.85e-125 | 370 |
| Msa0468680 | MtrunA17_Chr1g0207351 | 56.667 | 360 | 133 | 10 | 111 | 457 | 17 | 366 | 3.77e-117 | 347 |
| Msa0468680 | MtrunA17_Chr7g0243331 | 53.824 | 353 | 151 | 7 | 110 | 457 | 5 | 350 | 9.07e-114 | 338 |
| Msa0468680 | MtrunA17_Chr3g0093911 | 55.220 | 364 | 133 | 11 | 108 | 457 | 3 | 350 | 1.92e-113 | 337 |
| Msa0468680 | MtrunA17_Chr3g0123471 | 66.038 | 265 | 84 | 4 | 186 | 450 | 1 | 259 | 2.33e-109 | 323 |
| Msa0468680 | MtrunA17_Chr1g0209051 | 55.396 | 278 | 109 | 6 | 186 | 456 | 1 | 270 | 4.32e-86 | 265 |
| Msa0468680 | MtrunA17_Chr4g0075861 | 51.502 | 233 | 90 | 6 | 1 | 222 | 150 | 370 | 1.58e-58 | 197 |
| Msa0468680 | MtrunA17_Chr7g0243391 | 52.830 | 212 | 90 | 4 | 108 | 311 | 16 | 225 | 2.53e-55 | 184 |
| Msa0468680 | MtrunA17_Chr6g0486591 | 60.248 | 161 | 55 | 5 | 304 | 457 | 1 | 159 | 1.28e-53 | 177 |
| Msa0468680 | MtrunA17_Chr1g0202841 | 51.397 | 179 | 77 | 5 | 283 | 457 | 7 | 179 | 9.88e-51 | 170 |
| Msa0468680 | MtrunA17_Chr1g0196231 | 57.616 | 151 | 57 | 4 | 98 | 245 | 218 | 364 | 6.07e-45 | 160 |
| Msa0468680 | MtrunA17_Chr6g0486601 | 66.038 | 106 | 34 | 2 | 1 | 104 | 1 | 106 | 2.96e-41 | 142 |
| Msa0468680 | MtrunA17_Chr1g0187941 | 53.788 | 132 | 56 | 2 | 283 | 411 | 7 | 136 | 2.32e-35 | 128 |
| Msa0468680 | MtrunA17_Chr1g0206951 | 59.459 | 111 | 43 | 2 | 111 | 219 | 4 | 114 | 2.49e-33 | 122 |
| Msa0468680 | MtrunA17_Chr6g0459061 | 26.198 | 313 | 222 | 6 | 114 | 423 | 18 | 324 | 6.69e-25 | 105 |
| Msa0468680 | MtrunA17_Chr7g0238781 | 44.030 | 134 | 72 | 3 | 138 | 270 | 27 | 158 | 4.56e-24 | 98.2 |
| Msa0468680 | MtrunA17_Chr1g0196241 | 60.811 | 74 | 28 | 1 | 350 | 422 | 1 | 74 | 4.62e-23 | 92.8 |
| Msa0468680 | MtrunA17_Chr1g0209191 | 48.515 | 101 | 44 | 3 | 361 | 456 | 1 | 98 | 4.19e-19 | 82.4 |
| Msa0468680 | MtrunA17_Chr1g0209061 | 36.923 | 130 | 46 | 4 | 17 | 145 | 13 | 107 | 6.76e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATATGTATTTAATTT+TGG | 0.076118 | 3_3:-70386852 | Msa0468680:CDS |
| TTAAATACATATGCCCTTTA+AGG | 0.116085 | 3_3:+70386858 | None:intergenic |
| ACCATCTTTCTTCTTGTAAA+TGG | 0.150870 | 3_3:+70385075 | None:intergenic |
| TCTTGCACACACTACCAAAT+TGG | 0.258446 | 3_3:+70385325 | None:intergenic |
| GGGCATTTCATAAAATTTAT+TGG | 0.268156 | 3_3:-70385296 | Msa0468680:CDS |
| TTATGTCAAGTTGGAATCTT+TGG | 0.282828 | 3_3:-70384638 | Msa0468680:CDS |
| GGGTTTCTCCATGAAGTAAA+AGG | 0.289430 | 3_3:-70387010 | Msa0468680:CDS |
| TTTGGACAAGTAATGGTTCT+TGG | 0.297479 | 3_3:+70385256 | None:intergenic |
| CACAAAATCAGAGTGTATAA+AGG | 0.303879 | 3_3:-70384508 | Msa0468680:CDS |
| TTTGATGACCTCTTCCAATT+TGG | 0.304325 | 3_3:-70385339 | Msa0468680:CDS |
| CAGAGAATTGTGAGCTTCCT+TGG | 0.308267 | 3_3:-70385395 | Msa0468680:CDS |
| TTCCAACTTGACATAATTCA+TGG | 0.322574 | 3_3:+70384645 | None:intergenic |
| GTCATCAAAATCTATCATTC+TGG | 0.330461 | 3_3:+70385353 | None:intergenic |
| CATTCTTAACACGGGACCTT+TGG | 0.330540 | 3_3:+70385238 | None:intergenic |
| CTCAGAGGAATTTGTCTTGG+TGG | 0.350287 | 3_3:-70384980 | Msa0468680:CDS |
| ACAGAAGGTGGAATTAATTC+TGG | 0.356713 | 3_3:+70384469 | None:intergenic |
| GAAGTAAAAGGCTTGTTTCA+TGG | 0.359706 | 3_3:-70386998 | Msa0468680:CDS |
| ACAAAATCAGAGTGTATAAA+GGG | 0.359913 | 3_3:-70384507 | Msa0468680:CDS |
| AATTTATTGGAGGAATTTCA+TGG | 0.361680 | 3_3:-70385283 | Msa0468680:CDS |
| CCAGTTCTAAAATCTGGAAC+CGG | 0.371531 | 3_3:-70387031 | Msa0468680:CDS |
| GTCTATCAATCTCGAAATCT+TGG | 0.381218 | 3_3:-70384928 | Msa0468680:CDS |
| CTTGTCAGTGATAACATATA+TGG | 0.392160 | 3_3:+70384849 | None:intergenic |
| TGATCATGATGGATTGGAAT+TGG | 0.396527 | 3_3:+70386791 | None:intergenic |
| TTTCATAACCCCACATGCTT+GGG | 0.397525 | 3_3:+70384563 | None:intergenic |
| AAGGCTTGTTTCATGGCAAA+AGG | 0.410150 | 3_3:-70386991 | Msa0468680:CDS |
| CTTTGTTTGAATTCTTGAAC+TGG | 0.411879 | 3_3:+70386893 | None:intergenic |
| ACACTTCCAGTTCTAAAATC+TGG | 0.417357 | 3_3:-70387037 | Msa0468680:CDS |
| TATGTCAAGTTGGAATCTTT+GGG | 0.417393 | 3_3:-70384637 | Msa0468680:CDS |
| AGGGTGAATGAGGTCCTTAA+AGG | 0.432093 | 3_3:-70386872 | Msa0468680:CDS |
| AGCGGATATTTGATCATGAC+AGG | 0.432124 | 3_3:-70385126 | Msa0468680:CDS |
| TCCATTTACAAGAAGAAAGA+TGG | 0.442051 | 3_3:-70385076 | Msa0468680:CDS |
| ACATGAGGCATTATCGAATC+AGG | 0.445618 | 3_3:-70386817 | Msa0468680:CDS |
| TTGGTGAGATAAGCTGATAA+AGG | 0.447533 | 3_3:+70385209 | None:intergenic |
| AGAGAATTGTGAGCTTCCTT+GGG | 0.456812 | 3_3:-70385394 | Msa0468680:CDS |
| CAAAGGTCCCGTGTTAAGAA+TGG | 0.463567 | 3_3:-70385237 | Msa0468680:CDS |
| ATCAATCTCGAAATCTTGGT+TGG | 0.466791 | 3_3:-70384924 | Msa0468680:CDS |
| TTGGTAGTGTGTGCAAGAAT+TGG | 0.479679 | 3_3:-70385320 | Msa0468680:CDS |
| GGAACAACCCTACTTGTACT+TGG | 0.481784 | 3_3:-70384422 | Msa0468680:CDS |
| CGGGACCTTTGGACAAGTAA+TGG | 0.484128 | 3_3:+70385249 | None:intergenic |
| TCAATCTCGAAATCTTGGTT+GGG | 0.489944 | 3_3:-70384923 | Msa0468680:CDS |
| ATGCTGATTATGCATATGTA+AGG | 0.493465 | 3_3:-70384750 | Msa0468680:CDS |
| GGGTGAATGAGGTCCTTAAA+GGG | 0.494064 | 3_3:-70386871 | Msa0468680:CDS |
| TACTTATTCAACACCACATA+GGG | 0.497231 | 3_3:-70384899 | Msa0468680:CDS |
| AACCATGAATTATGTCAAGT+TGG | 0.497832 | 3_3:-70384647 | Msa0468680:CDS |
| AGGCTTGTTTCATGGCAAAA+GGG | 0.501409 | 3_3:-70386990 | Msa0468680:CDS |
| AGTTCAAGAATTCAAACAAA+GGG | 0.501785 | 3_3:-70386891 | Msa0468680:CDS |
| GGTTGTTCCGAGTCGGATGT+TGG | 0.502946 | 3_3:+70384436 | None:intergenic |
| GACCTAGTTGTTGATCATGA+TGG | 0.505103 | 3_3:+70386780 | None:intergenic |
| GTACAGATTAAACATTATGT+TGG | 0.512395 | 3_3:+70384684 | None:intergenic |
| ATCACTGACAAGGCCAACAT+TGG | 0.512601 | 3_3:-70384838 | Msa0468680:CDS |
| CAGTTCTAAAATCTGGAACC+GGG | 0.514932 | 3_3:-70387030 | Msa0468680:CDS |
| TTTAAAGTTGATTACTCCTG+TGG | 0.517486 | 3_3:-70385036 | Msa0468680:CDS |
| AACCCTACTTGTACTTGGAC+TGG | 0.517501 | 3_3:-70384417 | Msa0468680:CDS |
| GACTCCATGTTCGTTTGCCA+TGG | 0.517527 | 3_3:+70387060 | None:intergenic |
| TCCGCTAGAAGACCCATGAT+AGG | 0.521743 | 3_3:+70385143 | None:intergenic |
| TAAGACATGGCAAGAACCAC+AGG | 0.524722 | 3_3:+70385020 | None:intergenic |
| AGTTGTTGATCATGATGGAT+TGG | 0.527383 | 3_3:+70386785 | None:intergenic |
| GCCTCCATGGCAAACGAACA+TGG | 0.527596 | 3_3:-70387064 | None:intergenic |
| AGGCTCAGAGGAATTTGTCT+TGG | 0.528013 | 3_3:-70384983 | Msa0468680:CDS |
| GCCTATCATGGGTCTTCTAG+CGG | 0.531172 | 3_3:-70385144 | Msa0468680:CDS |
| ATTCAAACAAAGGGTGAATG+AGG | 0.537107 | 3_3:-70386882 | Msa0468680:CDS |
| AAAAGTTTATCACTCAAAGA+TGG | 0.550583 | 3_3:-70385187 | Msa0468680:CDS |
| TGATTATGCATATGTAAGGT+TGG | 0.550918 | 3_3:-70384746 | Msa0468680:CDS |
| CATTTCATAAAATTTATTGG+AGG | 0.553532 | 3_3:-70385293 | Msa0468680:CDS |
| TTACTTATTCAACACCACAT+AGG | 0.554579 | 3_3:-70384900 | Msa0468680:CDS |
| CAAACTGAGTATCCCAATGT+TGG | 0.558277 | 3_3:+70384825 | None:intergenic |
| TCACTGACAAGGCCAACATT+GGG | 0.559813 | 3_3:-70384837 | Msa0468680:CDS |
| ACACCAGTCCAAGTACAAGT+AGG | 0.564649 | 3_3:+70384414 | None:intergenic |
| CAAGTAGGGTTGTTCCGAGT+CGG | 0.572575 | 3_3:+70384429 | None:intergenic |
| CACCAGTCCAAGTACAAGTA+GGG | 0.572999 | 3_3:+70384415 | None:intergenic |
| CATTGAACAACCCAAGCATG+TGG | 0.574764 | 3_3:-70384573 | Msa0468680:CDS |
| ACAAAATCAACAACCCTATG+TGG | 0.580187 | 3_3:+70384886 | None:intergenic |
| GTAGTGTGTGCAAGAATTGG+CGG | 0.595582 | 3_3:-70385317 | Msa0468680:CDS |
| CAGTTCAAGAATTCAAACAA+AGG | 0.597402 | 3_3:-70386892 | Msa0468680:CDS |
| ATGATATCTAACAAATCCCA+AGG | 0.602002 | 3_3:+70385378 | None:intergenic |
| TGGGATTCAACGACTACATG+AGG | 0.603464 | 3_3:-70386832 | Msa0468680:CDS |
| AAGAACCATTACTTGTCCAA+AGG | 0.610806 | 3_3:-70385254 | Msa0468680:CDS |
| CAACAACTAGGTCATAAGAC+TGG | 0.619673 | 3_3:-70386770 | Msa0468680:intron |
| TTGAACAACCCAAGCATGTG+GGG | 0.628995 | 3_3:-70384571 | Msa0468680:CDS |
| ATTGAACAACCCAAGCATGT+GGG | 0.631550 | 3_3:-70384572 | Msa0468680:CDS |
| ACACACTACCAAATTGGAAG+AGG | 0.631572 | 3_3:+70385331 | None:intergenic |
| TAGTGTGTGCAAGAATTGGC+GGG | 0.631650 | 3_3:-70385316 | Msa0468680:CDS |
| GTTGGTTCGATAAGTACAGA+AGG | 0.637789 | 3_3:+70384454 | None:intergenic |
| TAATCAGCATAAGTTACACT+AGG | 0.639591 | 3_3:+70384763 | None:intergenic |
| CATATATGTTATCACTGACA+AGG | 0.643115 | 3_3:-70384848 | Msa0468680:CDS |
| TATCGAACCAACATCCGACT+CGG | 0.648262 | 3_3:-70384443 | Msa0468680:CDS |
| GGTTCGATAAGTACAGAAGG+TGG | 0.650996 | 3_3:+70384457 | None:intergenic |
| CAAAATCAGAGTGTATAAAG+GGG | 0.656169 | 3_3:-70384506 | Msa0468680:CDS |
| ATCCATCATGATCAACAACT+AGG | 0.666444 | 3_3:-70386782 | Msa0468680:CDS |
| GCGGATATTTGATCATGACA+GGG | 0.702617 | 3_3:-70385125 | Msa0468680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTATAAATGGGTT+TGG | - | chr3_3:70384745-70384764 | Msa0468680:CDS | 15.0% |
| !! | TTGCACAAATATTTATATAA+AGG | + | chr3_3:70384964-70384983 | None:intergenic | 15.0% |
| !! | TTAAACCATTTAAAAAAAAC+AGG | + | chr3_3:70385928-70385947 | None:intergenic | 15.0% |
| !!! | TTTTTAAATGGTTTAATGTT+TGG | - | chr3_3:70385932-70385951 | Msa0468680:intron | 15.0% |
| !! | TAAAATTATCAACAAATGTG+AGG | + | chr3_3:70384723-70384742 | None:intergenic | 20.0% |
| !! | TGTGTTCATAACAAATAAAA+AGG | - | chr3_3:70384884-70384903 | Msa0468680:CDS | 20.0% |
| !! | TTCTTGTAAAAGTTATAAGA+AGG | + | chr3_3:70385022-70385041 | None:intergenic | 20.0% |
| !! | AAAATCATTAAAATCCAGTT+AGG | - | chr3_3:70385045-70385064 | Msa0468680:CDS | 20.0% |
| !!! | AATATCATAATTTGCATGTT+TGG | + | chr3_3:70385206-70385225 | None:intergenic | 20.0% |
| !!! | GAATTACATTGTTTAGTTTT+CGG | - | chr3_3:70385312-70385331 | Msa0468680:CDS | 20.0% |
| !!! | TTGAGTTTTTAGTTTGTATT+GGG | + | chr3_3:70385516-70385535 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTTAGTTTGTAT+TGG | + | chr3_3:70385517-70385536 | None:intergenic | 20.0% |
| !!! | TTACTCCTGTTTTTTTTAAA+TGG | - | chr3_3:70385920-70385939 | Msa0468680:intron | 20.0% |
| !! | CATTTCATAAAATTTATTGG+AGG | - | chr3_3:70386137-70386156 | Msa0468680:intron | 20.0% |
| !!! | GATTTTGTGAATTACATTAT+TGG | + | chr3_3:70386911-70386930 | None:intergenic | 20.0% |
| ! | AGTTCAAGAATTCAAACAAA+GGG | - | chr3_3:70384539-70384558 | Msa0468680:CDS | 25.0% |
| ! | TTAAATACATATGCCCTTTA+AGG | + | chr3_3:70384575-70384594 | None:intergenic | 25.0% |
| !!! | AGGGCATATGTATTTAATTT+TGG | - | chr3_3:70384578-70384597 | Msa0468680:CDS | 25.0% |
| !!! | GGGCATATGTATTTAATTTT+GGG | - | chr3_3:70384579-70384598 | Msa0468680:CDS | 25.0% |
| ! | CTCAAATAGACAATTACAAA+CGG | + | chr3_3:70384800-70384819 | None:intergenic | 25.0% |
| ! | TGTAAAAGTTATAAGAAGGA+AGG | + | chr3_3:70385018-70385037 | None:intergenic | 25.0% |
| !!! | GACTCTATTTAGTTTGAATT+GGG | - | chr3_3:70385171-70385190 | Msa0468680:CDS | 25.0% |
| ! | CTATATTTACCTCTACAATT+AGG | - | chr3_3:70385254-70385273 | Msa0468680:CDS | 25.0% |
| !! | CAACTTTTATAGCTTTCATA+GGG | + | chr3_3:70385718-70385737 | None:intergenic | 25.0% |
| ! | TTTCCATTTGAGTATGAAAA+TGG | - | chr3_3:70385784-70385803 | Msa0468680:intron | 25.0% |
| ! | TTCCATTTGAGTATGAAAAT+GGG | - | chr3_3:70385785-70385804 | Msa0468680:intron | 25.0% |
| ! | GAAAATGGGTATTTATTGTT+TGG | - | chr3_3:70385799-70385818 | Msa0468680:intron | 25.0% |
| ! | ATACAAAGGGAAAAAAATGA+AGG | - | chr3_3:70386009-70386028 | Msa0468680:intron | 25.0% |
| ! | GGGCATTTCATAAAATTTAT+TGG | - | chr3_3:70386134-70386153 | Msa0468680:intron | 25.0% |
| ! | AATTTATTGGAGGAATTTCA+TGG | - | chr3_3:70386147-70386166 | Msa0468680:intron | 25.0% |
| !! | TCTTTGAGTGATAAACTTTT+TGG | + | chr3_3:70386243-70386262 | None:intergenic | 25.0% |
| ! | AAAAGTTTATCACTCAAAGA+TGG | - | chr3_3:70386243-70386262 | Msa0468680:intron | 25.0% |
| ! | GTACAGATTAAACATTATGT+TGG | + | chr3_3:70386749-70386768 | None:intergenic | 25.0% |
| ! | ACAAAATCAGAGTGTATAAA+GGG | - | chr3_3:70386923-70386942 | Msa0468680:CDS | 25.0% |
| ! | CTTTGTTTGAATTCTTGAAC+TGG | + | chr3_3:70384540-70384559 | None:intergenic | 30.0% |
| CAGTTCAAGAATTCAAACAA+AGG | - | chr3_3:70384538-70384557 | Msa0468680:CDS | 30.0% | |
| TAAAAACATGAAGTCTGAGT+AGG | + | chr3_3:70384920-70384939 | None:intergenic | 30.0% | |
| ! | TACTCAGACTTCATGTTTTT+AGG | - | chr3_3:70384919-70384938 | Msa0468680:CDS | 30.0% |
| ! | TGATGATTGCTGTTAAAACA+AGG | - | chr3_3:70384989-70385008 | Msa0468680:CDS | 30.0% |
| AATCTAACTGAATTCCTAAC+TGG | + | chr3_3:70385062-70385081 | None:intergenic | 30.0% | |
| TTAGTATTCCCCAACATTTA+TGG | - | chr3_3:70385090-70385109 | Msa0468680:CDS | 30.0% | |
| ACAACATCACCATAAATGTT+GGG | + | chr3_3:70385102-70385121 | None:intergenic | 30.0% | |
| AACAACATCACCATAAATGT+TGG | + | chr3_3:70385103-70385122 | None:intergenic | 30.0% | |
| TCAAACTAAATAGAGTCCTA+GGG | + | chr3_3:70385168-70385187 | None:intergenic | 30.0% | |
| TTCAAACTAAATAGAGTCCT+AGG | + | chr3_3:70385169-70385188 | None:intergenic | 30.0% | |
| !! | GGACTCTATTTAGTTTGAAT+TGG | - | chr3_3:70385170-70385189 | Msa0468680:CDS | 30.0% |
| TATGATATTGCCACTCTAAT+TGG | - | chr3_3:70385217-70385236 | Msa0468680:CDS | 30.0% | |
| GGTAAATATAGTTTACCTTG+TGG | + | chr3_3:70385245-70385264 | None:intergenic | 30.0% | |
| AACAAACATCCTAATTGTAG+AGG | + | chr3_3:70385266-70385285 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTGTTTCTGATTCA+TGG | + | chr3_3:70385430-70385449 | None:intergenic | 30.0% |
| ! | GCAACTTTTATAGCTTTCAT+AGG | + | chr3_3:70385719-70385738 | None:intergenic | 30.0% |
| GAAATTAACAATGTAGCATC+CGG | + | chr3_3:70385768-70385787 | None:intergenic | 30.0% | |
| ! | TACCCATTTTCATACTCAAA+TGG | + | chr3_3:70385790-70385809 | None:intergenic | 30.0% |
| CATAGTTATGTTGCTGTAAA+AGG | - | chr3_3:70385822-70385841 | Msa0468680:intron | 30.0% | |
| ATGATATCTAACAAATCCCA+AGG | + | chr3_3:70386055-70386074 | None:intergenic | 30.0% | |
| GTCATCAAAATCTATCATTC+TGG | + | chr3_3:70386080-70386099 | None:intergenic | 30.0% | |
| AGGAAAAACCATTCTTAACA+CGG | + | chr3_3:70386204-70386223 | None:intergenic | 30.0% | |
| TCCATTTACAAGAAGAAAGA+TGG | - | chr3_3:70386354-70386373 | Msa0468680:intron | 30.0% | |
| ACCATCTTTCTTCTTGTAAA+TGG | + | chr3_3:70386358-70386377 | None:intergenic | 30.0% | |
| ! | TTTAAAGTTGATTACTCCTG+TGG | - | chr3_3:70386394-70386413 | Msa0468680:intron | 30.0% |
| TGTAAAAAGCAAGTAAGACA+TGG | + | chr3_3:70386426-70386445 | None:intergenic | 30.0% | |
| TTACTTATTCAACACCACAT+AGG | - | chr3_3:70386530-70386549 | Msa0468680:intron | 30.0% | |
| TACTTATTCAACACCACATA+GGG | - | chr3_3:70386531-70386550 | Msa0468680:intron | 30.0% | |
| CTTGTCAGTGATAACATATA+TGG | + | chr3_3:70386584-70386603 | None:intergenic | 30.0% | |
| CATATATGTTATCACTGACA+AGG | - | chr3_3:70386582-70386601 | Msa0468680:intron | 30.0% | |
| TAATCAGCATAAGTTACACT+AGG | + | chr3_3:70386670-70386689 | None:intergenic | 30.0% | |
| ! | ATGCTGATTATGCATATGTA+AGG | - | chr3_3:70386680-70386699 | Msa0468680:intron | 30.0% |
| TGATTATGCATATGTAAGGT+TGG | - | chr3_3:70386684-70386703 | Msa0468680:intron | 30.0% | |
| AACCATGAATTATGTCAAGT+TGG | - | chr3_3:70386783-70386802 | Msa0468680:CDS | 30.0% | |
| TTCCAACTTGACATAATTCA+TGG | + | chr3_3:70386788-70386807 | None:intergenic | 30.0% | |
| !! | TTATGTCAAGTTGGAATCTT+TGG | - | chr3_3:70386792-70386811 | Msa0468680:CDS | 30.0% |
| !! | TATGTCAAGTTGGAATCTTT+GGG | - | chr3_3:70386793-70386812 | Msa0468680:CDS | 30.0% |
| CACAAAATCAGAGTGTATAA+AGG | - | chr3_3:70386922-70386941 | Msa0468680:CDS | 30.0% | |
| CAAAATCAGAGTGTATAAAG+GGG | - | chr3_3:70386924-70386943 | Msa0468680:CDS | 30.0% | |
| !! | ACACTTCCAGTTCTAAAATC+TGG | - | chr3_3:70384393-70384412 | Msa0468680:CDS | 35.0% |
| ! | TTTTACTTCATGGAGAAACC+CGG | + | chr3_3:70384421-70384440 | None:intergenic | 35.0% |
| ! | GAAACAAGCCTTTTACTTCA+TGG | + | chr3_3:70384431-70384450 | None:intergenic | 35.0% |
| ! | GAAGTAAAAGGCTTGTTTCA+TGG | - | chr3_3:70384432-70384451 | Msa0468680:CDS | 35.0% |
| ATTCAAACAAAGGGTGAATG+AGG | - | chr3_3:70384548-70384567 | Msa0468680:CDS | 35.0% | |
| !! | TGATCATGATGGATTGGAAT+TGG | + | chr3_3:70384642-70384661 | None:intergenic | 35.0% |
| !! | AGTTGTTGATCATGATGGAT+TGG | + | chr3_3:70384648-70384667 | None:intergenic | 35.0% |
| ATCCATCATGATCAACAACT+AGG | - | chr3_3:70384648-70384667 | Msa0468680:CDS | 35.0% | |
| !!! | CAGACTTCATGTTTTTAGGT+TGG | - | chr3_3:70384923-70384942 | Msa0468680:CDS | 35.0% |
| CAACATCACCATAAATGTTG+GGG | + | chr3_3:70385101-70385120 | None:intergenic | 35.0% | |
| ! | CATTTATGGTGATGTTGTTG+AGG | - | chr3_3:70385104-70385123 | Msa0468680:CDS | 35.0% |
| !!! | GGCTATTTGTTTTGGTGTAT+CGG | + | chr3_3:70385478-70385497 | None:intergenic | 35.0% |
| !!! | GTTTTGTTTCTGGTGTGTTT+TGG | + | chr3_3:70385569-70385588 | None:intergenic | 35.0% |
| !!! | CAGTATTCGTGTTTTGTTTC+TGG | + | chr3_3:70385579-70385598 | None:intergenic | 35.0% |
| ! | GCTTTCATAGGGATGTATTT+TGG | + | chr3_3:70385707-70385726 | None:intergenic | 35.0% |
| !! | TGTCATTTGCTGTGATACAA+AGG | - | chr3_3:70385995-70386014 | Msa0468680:intron | 35.0% |
| !! | GTCATTTGCTGTGATACAAA+GGG | - | chr3_3:70385996-70386015 | Msa0468680:intron | 35.0% |
| ! | TTTGATGACCTCTTCCAATT+TGG | - | chr3_3:70386091-70386110 | Msa0468680:intron | 35.0% |
| TTTGGACAAGTAATGGTTCT+TGG | + | chr3_3:70386177-70386196 | None:intergenic | 35.0% | |
| AAGAACCATTACTTGTCCAA+AGG | - | chr3_3:70386176-70386195 | Msa0468680:intron | 35.0% | |
| GGAAAAACCATTCTTAACAC+GGG | + | chr3_3:70386203-70386222 | None:intergenic | 35.0% | |
| TTGGTGAGATAAGCTGATAA+AGG | + | chr3_3:70386224-70386243 | None:intergenic | 35.0% | |
| GGCAAAAATGACGAAGTTAT+TGG | + | chr3_3:70386269-70386288 | None:intergenic | 35.0% | |
| !!! | TTCGTCATTTTTGCCTATCA+TGG | - | chr3_3:70386274-70386293 | Msa0468680:intron | 35.0% |
| !!! | TCGTCATTTTTGCCTATCAT+GGG | - | chr3_3:70386275-70386294 | Msa0468680:intron | 35.0% |
| !!! | GTCTTACTTGCTTTTTACAG+AGG | - | chr3_3:70386427-70386446 | Msa0468680:intron | 35.0% |
| GTCTATCAATCTCGAAATCT+TGG | - | chr3_3:70386502-70386521 | Msa0468680:intron | 35.0% | |
| ATCAATCTCGAAATCTTGGT+TGG | - | chr3_3:70386506-70386525 | Msa0468680:intron | 35.0% | |
| TCAATCTCGAAATCTTGGTT+GGG | - | chr3_3:70386507-70386526 | Msa0468680:intron | 35.0% | |
| ACAAAATCAACAACCCTATG+TGG | + | chr3_3:70386547-70386566 | None:intergenic | 35.0% | |
| ACAGAAGGTGGAATTAATTC+TGG | + | chr3_3:70386964-70386983 | None:intergenic | 35.0% | |
| !! | CCAGTTCTAAAATCTGGAAC+CGG | - | chr3_3:70384399-70384418 | Msa0468680:CDS | 40.0% |
| !! | CAGTTCTAAAATCTGGAACC+GGG | - | chr3_3:70384400-70384419 | Msa0468680:CDS | 40.0% |
| GGGTTTCTCCATGAAGTAAA+AGG | - | chr3_3:70384420-70384439 | Msa0468680:CDS | 40.0% | |
| ! | AAGGCTTGTTTCATGGCAAA+AGG | - | chr3_3:70384439-70384458 | Msa0468680:CDS | 40.0% |
| ! | AGGCTTGTTTCATGGCAAAA+GGG | - | chr3_3:70384440-70384459 | Msa0468680:CDS | 40.0% |
| ! | ACATGAGGCATTATCGAATC+AGG | - | chr3_3:70384613-70384632 | Msa0468680:CDS | 40.0% |
| GACCTAGTTGTTGATCATGA+TGG | + | chr3_3:70384653-70384672 | None:intergenic | 40.0% | |
| CAACAACTAGGTCATAAGAC+TGG | - | chr3_3:70384660-70384679 | Msa0468680:CDS | 40.0% | |
| ACTAAATAGAGTCCTAGGGT+GGG | + | chr3_3:70385164-70385183 | None:intergenic | 40.0% | |
| AACTAAATAGAGTCCTAGGG+TGG | + | chr3_3:70385165-70385184 | None:intergenic | 40.0% | |
| ACAGATTACAACACCGACAA+AGG | - | chr3_3:70385450-70385469 | Msa0468680:intron | 40.0% | |
| TATTGGGTTATGCTTTGCCT+GGG | + | chr3_3:70385500-70385519 | None:intergenic | 40.0% | |
| ! | CTGTTCAGTGGTAGCAATTT+TGG | + | chr3_3:70385606-70385625 | None:intergenic | 40.0% |
| !!! | TGTGCTGATTTTCTGTTCAG+TGG | + | chr3_3:70385618-70385637 | None:intergenic | 40.0% |
| !!! | GCGTTTTTGTGTTACTTTGG+TGG | + | chr3_3:70385683-70385702 | None:intergenic | 40.0% |
| !!! | GGTGCGTTTTTGTGTTACTT+TGG | + | chr3_3:70385686-70385705 | None:intergenic | 40.0% |
| !!! | AGGTGTTTGCTGTGATTTTG+AGG | - | chr3_3:70385842-70385861 | Msa0468680:intron | 40.0% |
| !!! | TGTTTGCTGTGATTTTGAGG+TGG | - | chr3_3:70385845-70385864 | Msa0468680:intron | 40.0% |
| !!! | GTTTGCTGTGATTTTGAGGT+GGG | - | chr3_3:70385846-70385865 | Msa0468680:intron | 40.0% |
| ! | TTCTGTCTGTGATGGAGTAT+GGG | - | chr3_3:70385879-70385898 | Msa0468680:intron | 40.0% |
| TCACAGCAAATGACAGTGTT+AGG | + | chr3_3:70385990-70386009 | None:intergenic | 40.0% | |
| AGAGAATTGTGAGCTTCCTT+GGG | - | chr3_3:70386036-70386055 | Msa0468680:intron | 40.0% | |
| ACACACTACCAAATTGGAAG+AGG | + | chr3_3:70386102-70386121 | None:intergenic | 40.0% | |
| TCTTGCACACACTACCAAAT+TGG | + | chr3_3:70386108-70386127 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGTGTGCAAGAAT+TGG | - | chr3_3:70386110-70386129 | Msa0468680:intron | 40.0% |
| AGCGGATATTTGATCATGAC+AGG | - | chr3_3:70386304-70386323 | Msa0468680:intron | 40.0% | |
| GCGGATATTTGATCATGACA+GGG | - | chr3_3:70386305-70386324 | Msa0468680:intron | 40.0% | |
| !!! | GTCTTGGTGGTTTTATGTAG+AGG | - | chr3_3:70386463-70386482 | Msa0468680:intron | 40.0% |
| CAAACTGAGTATCCCAATGT+TGG | + | chr3_3:70386608-70386627 | None:intergenic | 40.0% | |
| ATTGAACAACCCAAGCATGT+GGG | - | chr3_3:70386858-70386877 | Msa0468680:CDS | 40.0% | |
| TTTCATAACCCCACATGCTT+GGG | + | chr3_3:70386870-70386889 | None:intergenic | 40.0% | |
| ! | TTTTCATAACCCCACATGCT+TGG | + | chr3_3:70386871-70386890 | None:intergenic | 40.0% |
| !! | GTTGGTTCGATAAGTACAGA+AGG | + | chr3_3:70386979-70386998 | None:intergenic | 40.0% |
| !!! | CCGGTTCCAGATTTTAGAAC+TGG | + | chr3_3:70384402-70384421 | None:intergenic | 45.0% |
| AGGGTGAATGAGGTCCTTAA+AGG | - | chr3_3:70384558-70384577 | Msa0468680:CDS | 45.0% | |
| GGGTGAATGAGGTCCTTAAA+GGG | - | chr3_3:70384559-70384578 | Msa0468680:CDS | 45.0% | |
| TGGGATTCAACGACTACATG+AGG | - | chr3_3:70384598-70384617 | Msa0468680:CDS | 45.0% | |
| !! | GTTGATGATGGCAAGGGTTT+AGG | + | chr3_3:70385141-70385160 | None:intergenic | 45.0% |
| CTAAATAGAGTCCTAGGGTG+GGG | + | chr3_3:70385163-70385182 | None:intergenic | 45.0% | |
| ATCCAAACACAACGCGAACT+CGG | - | chr3_3:70385358-70385377 | Msa0468680:CDS | 45.0% | |
| ! | AGCACGTGTTTTCGGATTTG+TGG | + | chr3_3:70385398-70385417 | None:intergenic | 45.0% |
| CAAATCCGAAAACACGTGCT+AGG | - | chr3_3:70385398-70385417 | Msa0468680:CDS | 45.0% | |
| ! | TGCTACCTAGCACGTGTTTT+CGG | + | chr3_3:70385406-70385425 | None:intergenic | 45.0% |
| !! | TGGTGTATCGGTTCCTTTGT+CGG | + | chr3_3:70385466-70385485 | None:intergenic | 45.0% |
| ACACCAAAACAAATAGCCCC+AGG | - | chr3_3:70385480-70385499 | Msa0468680:intron | 45.0% | |
| ! | TTGCCTGGGGCTATTTGTTT+TGG | + | chr3_3:70385486-70385505 | None:intergenic | 45.0% |
| ATTGGGTTATGCTTTGCCTG+GGG | + | chr3_3:70385499-70385518 | None:intergenic | 45.0% | |
| GTATTGGGTTATGCTTTGCC+TGG | + | chr3_3:70385501-70385520 | None:intergenic | 45.0% | |
| !!! | TGTTTCTGGTGTGTTTTGGC+TGG | + | chr3_3:70385565-70385584 | None:intergenic | 45.0% |
| TGCCTAAACCAGAATTGCAC+CGG | - | chr3_3:70385746-70385765 | Msa0468680:intron | 45.0% | |
| !! | ATCCGGTGCAATTCTGGTTT+AGG | + | chr3_3:70385751-70385770 | None:intergenic | 45.0% |
| ! | GTTCTGTCTGTGATGGAGTA+TGG | - | chr3_3:70385878-70385897 | Msa0468680:intron | 45.0% |
| ! | TCTGTCTGTGATGGAGTATG+GGG | - | chr3_3:70385880-70385899 | Msa0468680:intron | 45.0% |
| !! | TGTGATGGAGTATGGGGTTT+TGG | - | chr3_3:70385886-70385905 | Msa0468680:intron | 45.0% |
| CAGAGAATTGTGAGCTTCCT+TGG | - | chr3_3:70386035-70386054 | Msa0468680:intron | 45.0% | |
| GTAGTGTGTGCAAGAATTGG+CGG | - | chr3_3:70386113-70386132 | Msa0468680:intron | 45.0% | |
| TAGTGTGTGCAAGAATTGGC+GGG | - | chr3_3:70386114-70386133 | Msa0468680:intron | 45.0% | |
| CATTCTTAACACGGGACCTT+TGG | + | chr3_3:70386195-70386214 | None:intergenic | 45.0% | |
| CAAAGGTCCCGTGTTAAGAA+TGG | - | chr3_3:70386193-70386212 | Msa0468680:intron | 45.0% | |
| TAAGACATGGCAAGAACCAC+AGG | + | chr3_3:70386413-70386432 | None:intergenic | 45.0% | |
| !! | TGCTTTTTACAGAGGCTCAG+AGG | - | chr3_3:70386435-70386454 | Msa0468680:intron | 45.0% |
| AGGCTCAGAGGAATTTGTCT+TGG | - | chr3_3:70386447-70386466 | Msa0468680:intron | 45.0% | |
| CTCAGAGGAATTTGTCTTGG+TGG | - | chr3_3:70386450-70386469 | Msa0468680:intron | 45.0% | |
| ATCACTGACAAGGCCAACAT+TGG | - | chr3_3:70386592-70386611 | Msa0468680:intron | 45.0% | |
| TCACTGACAAGGCCAACATT+GGG | - | chr3_3:70386593-70386612 | Msa0468680:intron | 45.0% | |
| CATTGAACAACCCAAGCATG+TGG | - | chr3_3:70386857-70386876 | Msa0468680:CDS | 45.0% | |
| TTGAACAACCCAAGCATGTG+GGG | - | chr3_3:70386859-70386878 | Msa0468680:CDS | 45.0% | |
| GGTTCGATAAGTACAGAAGG+TGG | + | chr3_3:70386976-70386995 | None:intergenic | 45.0% | |
| TATCGAACCAACATCCGACT+CGG | - | chr3_3:70386987-70387006 | Msa0468680:CDS | 45.0% | |
| GGAACAACCCTACTTGTACT+TGG | - | chr3_3:70387008-70387027 | Msa0468680:CDS | 45.0% | |
| AACCCTACTTGTACTTGGAC+TGG | - | chr3_3:70387013-70387032 | Msa0468680:CDS | 45.0% | |
| CACCAGTCCAAGTACAAGTA+GGG | + | chr3_3:70387018-70387037 | None:intergenic | 45.0% | |
| ACACCAGTCCAAGTACAAGT+AGG | + | chr3_3:70387019-70387038 | None:intergenic | 45.0% | |
| !!! | TTTACTATATATTTTATAAA+TGG | - | chr3_3:70384739-70384758 | Msa0468680:CDS | 5.0% |
| !!! | TTACTATATATTTTATAAAT+GGG | - | chr3_3:70384740-70384759 | Msa0468680:CDS | 5.0% |
| CCTTGTGGAGCCAATTAGAG+TGG | + | chr3_3:70385230-70385249 | None:intergenic | 50.0% | |
| ! | CCACTCTAATTGGCTCCACA+AGG | - | chr3_3:70385227-70385246 | Msa0468680:CDS | 50.0% |
| TTCCGAGTTCGCGTTGTGTT+TGG | + | chr3_3:70385363-70385382 | None:intergenic | 50.0% | |
| ACACAACGCGAACTCGGAAT+TGG | - | chr3_3:70385364-70385383 | Msa0468680:CDS | 50.0% | |
| CCTCGGTTCATCTTAGCACT+CGG | + | chr3_3:70385540-70385559 | None:intergenic | 50.0% | |
| !!! | CTGAGGGCTAGTTTTTCTGC+AGG | + | chr3_3:70385644-70385663 | None:intergenic | 50.0% |
| TGTAGCATCCGGTGCAATTC+TGG | + | chr3_3:70385757-70385776 | None:intergenic | 50.0% | |
| !!! | TGCTGTGATTTTGAGGTGGG+AGG | - | chr3_3:70385849-70385868 | Msa0468680:intron | 50.0% |
| !!! | GCTGTGATTTTGAGGTGGGA+GGG | - | chr3_3:70385850-70385869 | Msa0468680:intron | 50.0% |
| !!! | CTGTGATTTTGAGGTGGGAG+GGG | - | chr3_3:70385851-70385870 | Msa0468680:intron | 50.0% |
| CGGGACCTTTGGACAAGTAA+TGG | + | chr3_3:70386184-70386203 | None:intergenic | 50.0% | |
| GCCTATCATGGGTCTTCTAG+CGG | - | chr3_3:70386286-70386305 | Msa0468680:intron | 50.0% | |
| TCCGCTAGAAGACCCATGAT+AGG | + | chr3_3:70386290-70386309 | None:intergenic | 50.0% | |
| CAAGTAGGGTTGTTCCGAGT+CGG | + | chr3_3:70387004-70387023 | None:intergenic | 50.0% | |
| !! | GGTGGGGTTGATGATGGCAA+GGG | + | chr3_3:70385147-70385166 | None:intergenic | 55.0% |
| !! | TCCTAGGGTGGGGTTGATGA+TGG | + | chr3_3:70385153-70385172 | None:intergenic | 55.0% |
| CCGAGTGCTAAGATGAACCG+AGG | - | chr3_3:70385537-70385556 | Msa0468680:intron | 55.0% | |
| !!! | GTGTGTTTTGGCTGGTGCCT+CGG | + | chr3_3:70385557-70385576 | None:intergenic | 55.0% |
| ! | TTGGTGGCCTCTCTGTTGTG+CGG | + | chr3_3:70385667-70385686 | None:intergenic | 55.0% |
| !!! | ATTTTGAGGTGGGAGGGGCT+TGG | - | chr3_3:70385856-70385875 | Msa0468680:intron | 55.0% |
| !! | GGGCTTGGTTCTGTCTGTGA+TGG | - | chr3_3:70385871-70385890 | Msa0468680:intron | 55.0% |
| GGTTGTTCCGAGTCGGATGT+TGG | + | chr3_3:70386997-70387016 | None:intergenic | 55.0% | |
| !! | GGGTGGGGTTGATGATGGCA+AGG | + | chr3_3:70385148-70385167 | None:intergenic | 60.0% |
| GCCATCATCAACCCCACCCT+AGG | - | chr3_3:70385149-70385168 | Msa0468680:CDS | 60.0% | |
| CCTCTCTGTTGTGCGGCTGA+GGG | + | chr3_3:70385660-70385679 | None:intergenic | 60.0% | |
| CCCTCAGCCGCACAACAGAG+AGG | - | chr3_3:70385657-70385676 | Msa0468680:intron | 65.0% | |
| GCCTCTCTGTTGTGCGGCTG+AGG | + | chr3_3:70385661-70385680 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70384372 | 70387080 | 70384372 | ID=Msa0468680;Name=Msa0468680 |
| chr3_3 | mRNA | 70384372 | 70387080 | 70384372 | ID=Msa0468680-mRNA-1;Parent=Msa0468680;Name=Msa0468680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0|1|1|1|2|0|457 |
| chr3_3 | exon | 70386771 | 70387080 | 70386771 | ID=Msa0468680-mRNA-1:exon:17039;Parent=Msa0468680-mRNA-1 |
| chr3_3 | exon | 70384372 | 70385435 | 70384372 | ID=Msa0468680-mRNA-1:exon:17038;Parent=Msa0468680-mRNA-1 |
| chr3_3 | CDS | 70386771 | 70387080 | 70386771 | ID=Msa0468680-mRNA-1:cds;Parent=Msa0468680-mRNA-1 |
| chr3_3 | CDS | 70384372 | 70385435 | 70384372 | ID=Msa0468680-mRNA-1:cds;Parent=Msa0468680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
