Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516470 | XP_013461426.2 | 87.027 | 185 | 4 | 1 | 1 | 185 | 1 | 165 | 1.99e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516470 | sp|Q8VZV9|PTA7_ARATH | 53.714 | 175 | 58 | 2 | 11 | 185 | 10 | 161 | 4.90e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516470 | A0A396IYW6 | 87.027 | 185 | 4 | 1 | 1 | 185 | 1 | 165 | 9.53e-109 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0516470 | Msa0528870 | 0.805482 | 1.306970e-49 | -8.615850e-47 |
| Msa0516470 | Msa0967680 | 0.984193 | 7.434506e-160 | -8.615850e-47 |
| Msa0516470 | Msa1309240 | 0.803119 | 4.059094e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516470 | MtrunA17_Chr3g0127071 | 87.027 | 185 | 4 | 1 | 1 | 185 | 1 | 165 | 1.83e-112 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516470 | AT5G24314.2 | 54.857 | 175 | 64 | 3 | 11 | 185 | 10 | 169 | 1.99e-64 | 196 |
| Msa0516470 | AT5G24314.1 | 53.714 | 175 | 58 | 2 | 11 | 185 | 10 | 161 | 4.98e-63 | 192 |
Find 59 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCGAAGAGAGAGTAAA+TGG | 0.213475 | 3_4:-67978915 | None:intergenic |
| AGTTTAAAACCTTTCCTTTC+CGG | 0.230202 | 3_4:-67979549 | None:intergenic |
| CACCACTTTCCTTTCGCATT+TGG | 0.243431 | 3_4:-67979167 | None:intergenic |
| TGATTCTCTGCCCTACAAAA+TGG | 0.340113 | 3_4:+67980675 | Msa0516470:CDS |
| AATATGGAGGCGAAGGAAAA+TGG | 0.348814 | 3_4:+67979197 | Msa0516470:CDS |
| GAGTCTGATCCCTTCAAACC+TGG | 0.410327 | 3_4:+67980946 | Msa0516470:CDS |
| AGCTGGTGTTTACTGAACTT+TGG | 0.420425 | 3_4:-67978874 | None:intergenic |
| TTTCCGGAAAATGAGCAAAC+GGG | 0.435211 | 3_4:-67979533 | None:intergenic |
| TGAGGGAAAACTCTTGCAAT+TGG | 0.438639 | 3_4:+67980741 | Msa0516470:CDS |
| CTTTCCGGAAAATGAGCAAA+CGG | 0.439938 | 3_4:-67979534 | None:intergenic |
| AAAGTGGTGGACGAAGAATA+TGG | 0.452551 | 3_4:+67979181 | Msa0516470:CDS |
| GGAGCAGGTGAGGAAGATAA+AGG | 0.452829 | 3_4:+67980717 | Msa0516470:CDS |
| TCAGACTCGGCATACGCCTC+TGG | 0.453063 | 3_4:-67980931 | None:intergenic |
| CTCACCTGCTCCTCGAGAAA+AGG | 0.458089 | 3_4:-67980706 | None:intergenic |
| ATAATGAGGCCCAGGTTTGA+AGG | 0.480274 | 3_4:-67980956 | None:intergenic |
| GAGAGCAACATGGATGAGTA+TGG | 0.481625 | 3_4:+67980844 | Msa0516470:CDS |
| GGTGAGGAAGATAAAGGATG+AGG | 0.481739 | 3_4:+67980723 | Msa0516470:CDS |
| CGCCTCTGGACGGTAAAATC+CGG | 0.489373 | 3_4:-67980917 | None:intergenic |
| ATTACTCAAAACATGAAGAA+TGG | 0.511919 | 3_4:-67980881 | None:intergenic |
| GCGAGTTAACACTCAGGCTC+GGG | 0.514482 | 3_4:-67979051 | None:intergenic |
| TGCGAGTTAACACTCAGGCT+CGG | 0.517311 | 3_4:-67979052 | None:intergenic |
| TCAGAAGGGGCTATTAAATG+AGG | 0.524071 | 3_4:-67981222 | None:intergenic |
| TAAAACTCTTTCAAATAATG+AGG | 0.525568 | 3_4:-67980970 | None:intergenic |
| GATTATTCGTTCAAGAATCG+TGG | 0.525884 | 3_4:+67978765 | None:intergenic |
| AAGTCGAAGAGAGAGTAAAT+GGG | 0.538130 | 3_4:-67978914 | None:intergenic |
| TCTTTCAAATAATGAGGCCC+AGG | 0.542211 | 3_4:-67980964 | None:intergenic |
| AGTAATCGAGTGAATGATGC+CGG | 0.544993 | 3_4:+67980898 | Msa0516470:CDS |
| CAGAAGGGGCTATTAAATGA+GGG | 0.552593 | 3_4:-67981221 | None:intergenic |
| GTGAGGAAGATAAAGGATGA+GGG | 0.559910 | 3_4:+67980724 | Msa0516470:CDS |
| TAATTCCGTATCTTGTGTAG+TGG | 0.562359 | 3_4:+67981155 | Msa0516470:three_prime_UTR |
| TAATGAGGCCCAGGTTTGAA+GGG | 0.566321 | 3_4:-67980955 | None:intergenic |
| CAGAAGATAGAATTAAGAGC+TGG | 0.569406 | 3_4:+67979016 | Msa0516470:intron |
| GACGAAGAATATGGAGGCGA+AGG | 0.570823 | 3_4:+67979190 | Msa0516470:CDS |
| AGTCTGATCCCTTCAAACCT+GGG | 0.572137 | 3_4:+67980947 | Msa0516470:CDS |
| AGTTCAGTAAACACCAGCTA+TGG | 0.573218 | 3_4:+67978878 | Msa0516470:exon |
| ATTATTCGTTCAAGAATCGT+GGG | 0.573686 | 3_4:+67978766 | None:intergenic |
| GAGCCTGAGTGTTAACTCGC+AGG | 0.575752 | 3_4:+67979054 | Msa0516470:CDS |
| AATTCCGTATCTTGTGTAGT+GGG | 0.577030 | 3_4:+67981156 | Msa0516470:three_prime_UTR |
| TTTACGCGGAGAGCCATAGC+TGG | 0.585067 | 3_4:-67978891 | None:intergenic |
| TCTTGCAATTGGACATAGAG+AGG | 0.595233 | 3_4:+67980752 | Msa0516470:CDS |
| ATCCAAATGCGAAAGGAAAG+TGG | 0.601949 | 3_4:+67979165 | Msa0516470:CDS |
| AGGTTTGAAGGGATCAGACT+CGG | 0.605147 | 3_4:-67980944 | None:intergenic |
| TTCCGGAAAATGAGCAAACG+GGG | 0.605515 | 3_4:-67979532 | None:intergenic |
| GTTGCTCTCAACATAAGCGT+TGG | 0.607357 | 3_4:-67980830 | None:intergenic |
| CGCTTATGTTGAGAGCAACA+TGG | 0.607844 | 3_4:+67980834 | Msa0516470:CDS |
| TCAAAGTCATCGAGAGCACG+TGG | 0.621106 | 3_4:+67981127 | Msa0516470:three_prime_UTR |
| TGTGAATGAGATAGCAGCTG+AGG | 0.626703 | 3_4:+67980807 | Msa0516470:CDS |
| GATGGTAATCCAAATGCGAA+AGG | 0.635273 | 3_4:+67979158 | Msa0516470:intron |
| AGAAGGGGCTATTAAATGAG+GGG | 0.655869 | 3_4:-67981220 | None:intergenic |
| ACTCGGCATACGCCTCTGGA+CGG | 0.681095 | 3_4:-67980927 | None:intergenic |
| AGAGAGTAAATGGGTTTACG+CGG | 0.685156 | 3_4:-67978905 | None:intergenic |
| ACATTAGGCTCAATACAAAG+AGG | 0.686108 | 3_4:+67979495 | Msa0516470:intron |
| TAAGCTGAGATGTTACATCA+CGG | 0.686316 | 3_4:+67981017 | Msa0516470:three_prime_UTR |
| CAAATGCGAAAGGAAAGTGG+TGG | 0.689015 | 3_4:+67979168 | Msa0516470:CDS |
| TCCGGAAAATGAGCAAACGG+GGG | 0.704923 | 3_4:-67979531 | None:intergenic |
| TGCATGCATACAAACAACAG+CGG | 0.719288 | 3_4:-67981102 | None:intergenic |
| ATACCTGCGAGTTAACACTC+AGG | 0.734021 | 3_4:-67979057 | None:intergenic |
| AGCAACATGGATGAGTATGG+AGG | 0.751548 | 3_4:+67980847 | Msa0516470:CDS |
| GTGGTGGACGAAGAATATGG+AGG | 0.759179 | 3_4:+67979184 | Msa0516470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTTAATTAAATA+AGG | + | chr3_4:67979425-67979444 | Msa0516470:intron | 0.0% |
| !!! | TTTTAATTTTAATTAAATAA+GGG | + | chr3_4:67979426-67979445 | Msa0516470:intron | 0.0% |
| !!! | TTATTTTACGATTATTATTT+GGG | - | chr3_4:67979299-67979318 | None:intergenic | 10.0% |
| !!! | TTTATTTTACGATTATTATT+TGG | - | chr3_4:67979300-67979319 | None:intergenic | 10.0% |
| !!! | GGAATTTTCTATATAATATT+TGG | - | chr3_4:67978828-67978847 | None:intergenic | 15.0% |
| !!! | ATTTTAATTAAATAAGGGTT+AGG | + | chr3_4:67979431-67979450 | Msa0516470:intron | 15.0% |
| !!! | TAATTCTAATATTCTAAAGT+TGG | + | chr3_4:67979574-67979593 | Msa0516470:intron | 15.0% |
| !! | CTTATCTCAAAAACTTATAA+AGG | - | chr3_4:67978849-67978868 | None:intergenic | 20.0% |
| !!! | CTTTATAAGTTTTTGAGATA+AGG | + | chr3_4:67978847-67978866 | Msa0516470:five_prime_UTR | 20.0% |
| !! | GACACAAATCAAATTTAATT+TGG | - | chr3_4:67980375-67980394 | None:intergenic | 20.0% |
| !! | TAAAACTCTTTCAAATAATG+AGG | - | chr3_4:67980973-67980992 | None:intergenic | 20.0% |
| !! | AGAAAAATATCAAATCAGAA+GGG | - | chr3_4:67981239-67981258 | None:intergenic | 20.0% |
| ! | AAGAAAGATATGAACATTAC+AGG | - | chr3_4:67978942-67978961 | None:intergenic | 25.0% |
| !!! | TTGATTTTGAAGTAACAGTT+TGG | - | chr3_4:67978984-67979003 | None:intergenic | 25.0% |
| ! | AATTTATACAAACAGGTAAG+AGG | - | chr3_4:67979275-67979294 | None:intergenic | 25.0% |
| ! | TTTGGGAAATTTATACAAAC+AGG | - | chr3_4:67979282-67979301 | None:intergenic | 25.0% |
| !!! | TATTCTAAAGTTGGAAAGTT+AGG | + | chr3_4:67979583-67979602 | Msa0516470:intron | 25.0% |
| !!! | ATTCTAAAGTTGGAAAGTTA+GGG | + | chr3_4:67979584-67979603 | Msa0516470:intron | 25.0% |
| ! | ATTTATTGGATTGCATGTTA+CGG | + | chr3_4:67979638-67979657 | Msa0516470:intron | 25.0% |
| ! | AAGTGTTATAGCTGTTAATT+TGG | - | chr3_4:67979721-67979740 | None:intergenic | 25.0% |
| !!! | AAATGTTTTGGGTTAAAATG+TGG | + | chr3_4:67980205-67980224 | Msa0516470:intron | 25.0% |
| ! | TTGATTGAATGAATGCATAA+TGG | + | chr3_4:67980543-67980562 | Msa0516470:intron | 25.0% |
| !! | CTTAAATATTCAAGTTCATC+GGG | - | chr3_4:67980623-67980642 | None:intergenic | 25.0% |
| !! | GCTTAAATATTCAAGTTCAT+CGG | - | chr3_4:67980624-67980643 | None:intergenic | 25.0% |
| ! | ATTACTCAAAACATGAAGAA+TGG | - | chr3_4:67980884-67980903 | None:intergenic | 25.0% |
| ! | GAAAAATATCAAATCAGAAG+GGG | - | chr3_4:67981238-67981257 | None:intergenic | 25.0% |
| ! | GAGAAAAATATCAAATCAGA+AGG | - | chr3_4:67981240-67981259 | None:intergenic | 25.0% |
| AAATGTGTTTGTAGTTCTCT+TGG | + | chr3_4:67979471-67979490 | Msa0516470:intron | 30.0% | |
| AATGTGTTTGTAGTTCTCTT+GGG | + | chr3_4:67979472-67979491 | Msa0516470:intron | 30.0% | |
| ! | AGTTTAAAACCTTTCCTTTC+CGG | - | chr3_4:67979552-67979571 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTGGAAAGTTAG+GGG | + | chr3_4:67979585-67979604 | Msa0516470:intron | 30.0% |
| TCTAGTGATGTGATTCATTA+AGG | + | chr3_4:67979937-67979956 | Msa0516470:intron | 30.0% | |
| ATTCATTAAGGAACACGATA+AGG | + | chr3_4:67979949-67979968 | Msa0516470:intron | 30.0% | |
| TTCATTAAGGAACACGATAA+GGG | + | chr3_4:67979950-67979969 | Msa0516470:intron | 30.0% | |
| ! | TCCTTTTATATATCCTCTCT+TGG | - | chr3_4:67980012-67980031 | None:intergenic | 30.0% |
| TGATATCATGCAAAACAACA+GGG | - | chr3_4:67980077-67980096 | None:intergenic | 30.0% | |
| ACATTTAGACATTGGGTATA+TGG | - | chr3_4:67980191-67980210 | None:intergenic | 30.0% | |
| ! | TACCCAATGTCTAAATGTTT+TGG | + | chr3_4:67980193-67980212 | Msa0516470:intron | 30.0% |
| ! | ACCCAATGTCTAAATGTTTT+GGG | + | chr3_4:67980194-67980213 | Msa0516470:intron | 30.0% |
| ACCCAAAACATTTAGACATT+GGG | - | chr3_4:67980198-67980217 | None:intergenic | 30.0% | |
| AACCCAAAACATTTAGACAT+TGG | - | chr3_4:67980199-67980218 | None:intergenic | 30.0% | |
| TTGCAAAAAATGCTTTCATG+TGG | + | chr3_4:67980339-67980358 | Msa0516470:intron | 30.0% | |
| TGAGACATATACCAGATATT+GGG | - | chr3_4:67980432-67980451 | None:intergenic | 30.0% | |
| ! | CATTTTGCTGCAGATAAAAA+AGG | + | chr3_4:67980651-67980670 | Msa0516470:intron | 30.0% |
| AAGTCGAAGAGAGAGTAAAT+GGG | - | chr3_4:67978917-67978936 | None:intergenic | 35.0% | |
| AAAGTCGAAGAGAGAGTAAA+TGG | - | chr3_4:67978918-67978937 | None:intergenic | 35.0% | |
| CAGAAGATAGAATTAAGAGC+TGG | + | chr3_4:67979016-67979035 | Msa0516470:intron | 35.0% | |
| ACATTGTGAGACAAGAAAGA+TGG | - | chr3_4:67979235-67979254 | None:intergenic | 35.0% | |
| ACTTTCTCAGTAGTTAGTAG+TGG | + | chr3_4:67979387-67979406 | Msa0516470:intron | 35.0% | |
| ACATTAGGCTCAATACAAAG+AGG | + | chr3_4:67979495-67979514 | Msa0516470:intron | 35.0% | |
| ! | TTTGTCGTGGATGGATTTAT+TGG | + | chr3_4:67979624-67979643 | Msa0516470:intron | 35.0% |
| CGATCTGGATTATAGATTTG+TGG | + | chr3_4:67979691-67979710 | Msa0516470:intron | 35.0% | |
| GCCAAGAGAGGATATATAAA+AGG | + | chr3_4:67980008-67980027 | Msa0516470:intron | 35.0% | |
| GTGATATCATGCAAAACAAC+AGG | - | chr3_4:67980078-67980097 | None:intergenic | 35.0% | |
| CAGCAACTACAACAACATAA+AGG | - | chr3_4:67980144-67980163 | None:intergenic | 35.0% | |
| TATGTTGTTGTAGTTGCTGT+TGG | + | chr3_4:67980145-67980164 | Msa0516470:intron | 35.0% | |
| GTCTTTGCTTCTTTCTATCA+TGG | + | chr3_4:67980392-67980411 | Msa0516470:intron | 35.0% | |
| ACATATACCAGATATTGGGA+CGG | - | chr3_4:67980428-67980447 | None:intergenic | 35.0% | |
| GTGAGACATATACCAGATAT+TGG | - | chr3_4:67980433-67980452 | None:intergenic | 35.0% | |
| !! | ATTTTGATGCCATAGTGAAG+TGG | + | chr3_4:67980478-67980497 | Msa0516470:intron | 35.0% |
| TGAATGCATAATGGTTATGC+TGG | + | chr3_4:67980552-67980571 | Msa0516470:intron | 35.0% | |
| ATGATTCATGCTATTGACAC+AGG | + | chr3_4:67980580-67980599 | Msa0516470:intron | 35.0% | |
| TAAGCTGAGATGTTACATCA+CGG | + | chr3_4:67981017-67981036 | Msa0516470:three_prime_UTR | 35.0% | |
| TAATTCCGTATCTTGTGTAG+TGG | + | chr3_4:67981155-67981174 | Msa0516470:three_prime_UTR | 35.0% | |
| AATTCCGTATCTTGTGTAGT+GGG | + | chr3_4:67981156-67981175 | Msa0516470:three_prime_UTR | 35.0% | |
| ! | TTTTCCCACTACACAAGATA+CGG | - | chr3_4:67981163-67981182 | None:intergenic | 35.0% |
| AGCTGGTGTTTACTGAACTT+TGG | - | chr3_4:67978877-67978896 | None:intergenic | 40.0% | |
| AGTTCAGTAAACACCAGCTA+TGG | + | chr3_4:67978878-67978897 | Msa0516470:exon | 40.0% | |
| ! | AGAGAGTAAATGGGTTTACG+CGG | - | chr3_4:67978908-67978927 | None:intergenic | 40.0% |
| CATGCATTTGTTCTGCAAGA+TGG | + | chr3_4:67979140-67979159 | Msa0516470:intron | 40.0% | |
| GATGGTAATCCAAATGCGAA+AGG | + | chr3_4:67979158-67979177 | Msa0516470:intron | 40.0% | |
| ATCCAAATGCGAAAGGAAAG+TGG | + | chr3_4:67979165-67979184 | Msa0516470:CDS | 40.0% | |
| !! | AAAGTGGTGGACGAAGAATA+TGG | + | chr3_4:67979181-67979200 | Msa0516470:CDS | 40.0% |
| AATATGGAGGCGAAGGAAAA+TGG | + | chr3_4:67979197-67979216 | Msa0516470:CDS | 40.0% | |
| TGTAGTTCTCTTGGGACATT+AGG | + | chr3_4:67979480-67979499 | Msa0516470:intron | 40.0% | |
| TTTCCGGAAAATGAGCAAAC+GGG | - | chr3_4:67979536-67979555 | None:intergenic | 40.0% | |
| CTTTCCGGAAAATGAGCAAA+CGG | - | chr3_4:67979537-67979556 | None:intergenic | 40.0% | |
| AGAGGTTAAAGAGTTTGTCG+TGG | + | chr3_4:67979611-67979630 | Msa0516470:intron | 40.0% | |
| GTTAAAGAGTTTGTCGTGGA+TGG | + | chr3_4:67979615-67979634 | Msa0516470:intron | 40.0% | |
| GTGAAACAGAATTAGCGATC+TGG | + | chr3_4:67979676-67979695 | Msa0516470:intron | 40.0% | |
| ! | ACTTGTGATGTGATGATGCA+AGG | + | chr3_4:67979737-67979756 | Msa0516470:intron | 40.0% |
| ! | CTTGTGATGTGATGATGCAA+GGG | + | chr3_4:67979738-67979757 | Msa0516470:intron | 40.0% |
| ! | GTGATGATGCAAGGGATTAT+TGG | + | chr3_4:67979746-67979765 | Msa0516470:intron | 40.0% |
| TGATGCAAGGGATTATTGGA+AGG | + | chr3_4:67979750-67979769 | Msa0516470:intron | 40.0% | |
| ! | AATTGCAATGTGTTGCTGCA+AGG | + | chr3_4:67979831-67979850 | Msa0516470:intron | 40.0% |
| AAGGAACACGATAAGGGAAA+AGG | + | chr3_4:67979956-67979975 | Msa0516470:intron | 40.0% | |
| CAACATAAAGGTCACATGCA+TGG | - | chr3_4:67980132-67980151 | None:intergenic | 40.0% | |
| AGTCTAGTGTGATCATTCCT+CGG | + | chr3_4:67980256-67980275 | Msa0516470:intron | 40.0% | |
| AACAACAGTTGGGTCATTAG+GGG | - | chr3_4:67980284-67980303 | None:intergenic | 40.0% | |
| CAACAACAGTTGGGTCATTA+GGG | - | chr3_4:67980285-67980304 | None:intergenic | 40.0% | |
| GTTCATATCGACAAACACCT+CGG | - | chr3_4:67980311-67980330 | None:intergenic | 40.0% | |
| ATGTGCATACCACTTCACTA+TGG | - | chr3_4:67980490-67980509 | None:intergenic | 40.0% | |
| TGATTCTCTGCCCTACAAAA+TGG | + | chr3_4:67980675-67980694 | Msa0516470:CDS | 40.0% | |
| GTGAGGAAGATAAAGGATGA+GGG | + | chr3_4:67980724-67980743 | Msa0516470:CDS | 40.0% | |
| TGAGGGAAAACTCTTGCAAT+TGG | + | chr3_4:67980741-67980760 | Msa0516470:CDS | 40.0% | |
| TCTTGCAATTGGACATAGAG+AGG | + | chr3_4:67980752-67980771 | Msa0516470:CDS | 40.0% | |
| AGTAATCGAGTGAATGATGC+CGG | + | chr3_4:67980898-67980917 | Msa0516470:CDS | 40.0% | |
| TCTTTCAAATAATGAGGCCC+AGG | - | chr3_4:67980967-67980986 | None:intergenic | 40.0% | |
| TGCATGCATACAAACAACAG+CGG | - | chr3_4:67981105-67981124 | None:intergenic | 40.0% | |
| AGAAGGGGCTATTAAATGAG+GGG | - | chr3_4:67981223-67981242 | None:intergenic | 40.0% | |
| CAGAAGGGGCTATTAAATGA+GGG | - | chr3_4:67981224-67981243 | None:intergenic | 40.0% | |
| TCAGAAGGGGCTATTAAATG+AGG | - | chr3_4:67981225-67981244 | None:intergenic | 40.0% | |
| ATACCTGCGAGTTAACACTC+AGG | - | chr3_4:67979060-67979079 | None:intergenic | 45.0% | |
| CACCACTTTCCTTTCGCATT+TGG | - | chr3_4:67979170-67979189 | None:intergenic | 45.0% | |
| CAAATGCGAAAGGAAAGTGG+TGG | + | chr3_4:67979168-67979187 | Msa0516470:CDS | 45.0% | |
| TTCCGGAAAATGAGCAAACG+GGG | - | chr3_4:67979535-67979554 | None:intergenic | 45.0% | |
| ! | CGTTTGCTCATTTTCCGGAA+AGG | + | chr3_4:67979535-67979554 | Msa0516470:CDS | 45.0% |
| ! | GCTCATTTTCCGGAAAGGAA+AGG | + | chr3_4:67979540-67979559 | Msa0516470:CDS | 45.0% |
| TTGGAAAGTTAGGGGACTAG+AGG | + | chr3_4:67979593-67979612 | Msa0516470:intron | 45.0% | |
| CATTGGGTATATGGATCCTC+TGG | - | chr3_4:67980182-67980201 | None:intergenic | 45.0% | |
| ACAACAGTTGGGTCATTAGG+GGG | - | chr3_4:67980283-67980302 | None:intergenic | 45.0% | |
| GCAACAACAGTTGGGTCATT+AGG | - | chr3_4:67980286-67980305 | None:intergenic | 45.0% | |
| CACATATCCGTCCCAATATC+TGG | + | chr3_4:67980418-67980437 | Msa0516470:intron | 45.0% | |
| ! | CACAGGTTTTCACGAGTATC+AGG | + | chr3_4:67980597-67980616 | Msa0516470:intron | 45.0% |
| ! | GGAATGCGCTCCATTTTGTA+GGG | - | chr3_4:67980688-67980707 | None:intergenic | 45.0% |
| ! | AGGAATGCGCTCCATTTTGT+AGG | - | chr3_4:67980689-67980708 | None:intergenic | 45.0% |
| GGTGAGGAAGATAAAGGATG+AGG | + | chr3_4:67980723-67980742 | Msa0516470:CDS | 45.0% | |
| TGTGAATGAGATAGCAGCTG+AGG | + | chr3_4:67980807-67980826 | Msa0516470:CDS | 45.0% | |
| GTTGCTCTCAACATAAGCGT+TGG | - | chr3_4:67980833-67980852 | None:intergenic | 45.0% | |
| CGCTTATGTTGAGAGCAACA+TGG | + | chr3_4:67980834-67980853 | Msa0516470:CDS | 45.0% | |
| GAGAGCAACATGGATGAGTA+TGG | + | chr3_4:67980844-67980863 | Msa0516470:CDS | 45.0% | |
| AGCAACATGGATGAGTATGG+AGG | + | chr3_4:67980847-67980866 | Msa0516470:CDS | 45.0% | |
| AGGTTTGAAGGGATCAGACT+CGG | - | chr3_4:67980947-67980966 | None:intergenic | 45.0% | |
| AGTCTGATCCCTTCAAACCT+GGG | + | chr3_4:67980947-67980966 | Msa0516470:CDS | 45.0% | |
| TAATGAGGCCCAGGTTTGAA+GGG | - | chr3_4:67980958-67980977 | None:intergenic | 45.0% | |
| ATAATGAGGCCCAGGTTTGA+AGG | - | chr3_4:67980959-67980978 | None:intergenic | 45.0% | |
| TGCGAGTTAACACTCAGGCT+CGG | - | chr3_4:67979055-67979074 | None:intergenic | 50.0% | |
| !! | GTGGTGGACGAAGAATATGG+AGG | + | chr3_4:67979184-67979203 | Msa0516470:CDS | 50.0% |
| GACGAAGAATATGGAGGCGA+AGG | + | chr3_4:67979190-67979209 | Msa0516470:CDS | 50.0% | |
| ! | TCCCCCGTTTGCTCATTTTC+CGG | + | chr3_4:67979530-67979549 | Msa0516470:CDS | 50.0% |
| TCCGGAAAATGAGCAAACGG+GGG | - | chr3_4:67979534-67979553 | None:intergenic | 50.0% | |
| TGCATGTTACGGAAGTGAGC+TGG | + | chr3_4:67979649-67979668 | Msa0516470:intron | 50.0% | |
| GTTGCTGCAAGGACGAACAT+AGG | + | chr3_4:67979842-67979861 | Msa0516470:intron | 50.0% | |
| AAGGGAAAAGGTAGCGTGAC+AGG | + | chr3_4:67979968-67979987 | Msa0516470:intron | 50.0% | |
| AGGGAAAAGGTAGCGTGACA+GGG | + | chr3_4:67979969-67979988 | Msa0516470:intron | 50.0% | |
| CACCTTGCTTCATTCTCTCG+CGG | + | chr3_4:67980098-67980117 | Msa0516470:intron | 50.0% | |
| ATCCGCGAGAGAATGAAGCA+AGG | - | chr3_4:67980103-67980122 | None:intergenic | 50.0% | |
| ! | GTTGGAGTATCAAGTGCCAG+AGG | + | chr3_4:67980163-67980182 | Msa0516470:intron | 50.0% |
| CCTCGGTAGCAACAACAGTT+GGG | - | chr3_4:67980294-67980313 | None:intergenic | 50.0% | |
| ACCTCGGTAGCAACAACAGT+TGG | - | chr3_4:67980295-67980314 | None:intergenic | 50.0% | |
| ! | CATTCCTTTTCTCGAGGAGC+AGG | + | chr3_4:67980702-67980721 | Msa0516470:CDS | 50.0% |
| GGAGCAGGTGAGGAAGATAA+AGG | + | chr3_4:67980717-67980736 | Msa0516470:CDS | 50.0% | |
| GAGTCTGATCCCTTCAAACC+TGG | + | chr3_4:67980946-67980965 | Msa0516470:CDS | 50.0% | |
| ! | TCAAAGTCATCGAGAGCACG+TGG | + | chr3_4:67981127-67981146 | Msa0516470:three_prime_UTR | 50.0% |
| TTTACGCGGAGAGCCATAGC+TGG | - | chr3_4:67978894-67978913 | None:intergenic | 55.0% | |
| GCGAGTTAACACTCAGGCTC+GGG | - | chr3_4:67979054-67979073 | None:intergenic | 55.0% | |
| GAGCCTGAGTGTTAACTCGC+AGG | + | chr3_4:67979054-67979073 | Msa0516470:CDS | 55.0% | |
| AGGTAGCGTGACAGGGAATG+AGG | + | chr3_4:67979976-67979995 | Msa0516470:intron | 55.0% | |
| TAGCGTGACAGGGAATGAGG+AGG | + | chr3_4:67979979-67979998 | Msa0516470:intron | 55.0% | |
| AGGAGGAGAAGAGCCAAGAG+AGG | + | chr3_4:67979996-67980015 | Msa0516470:intron | 55.0% | |
| CGCGAGAGAATGAAGCAAGG+TGG | - | chr3_4:67980100-67980119 | None:intergenic | 55.0% | |
| CCCAACTGTTGTTGCTACCG+AGG | + | chr3_4:67980291-67980310 | Msa0516470:intron | 55.0% | |
| ! | GGAGCGCATTCCTTTTCTCG+AGG | + | chr3_4:67980696-67980715 | Msa0516470:CDS | 55.0% |
| CTCACCTGCTCCTCGAGAAA+AGG | - | chr3_4:67980709-67980728 | None:intergenic | 55.0% | |
| ! | CTTTTCTCGAGGAGCAGGTG+AGG | + | chr3_4:67980707-67980726 | Msa0516470:CDS | 55.0% |
| ! | TGCCGGATTTTACCGTCCAG+AGG | + | chr3_4:67980915-67980934 | Msa0516470:CDS | 55.0% |
| CGCCTCTGGACGGTAAAATC+CGG | - | chr3_4:67980920-67980939 | None:intergenic | 55.0% | |
| TTGGGTCATTAGGGGGTCCG+AGG | - | chr3_4:67980276-67980295 | None:intergenic | 60.0% | |
| ACTCGGCATACGCCTCTGGA+CGG | - | chr3_4:67980930-67980949 | None:intergenic | 60.0% | |
| TCAGACTCGGCATACGCCTC+TGG | - | chr3_4:67980934-67980953 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67978775 | 67981305 | 67978775 | ID=Msa0516470;Name=Msa0516470 |
| chr3_4 | mRNA | 67978775 | 67981305 | 67978775 | ID=Msa0516470-mRNA-1;Parent=Msa0516470;Name=Msa0516470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=122|0.5|0.8|1|1|1|5|306|185 |
| chr3_4 | exon | 67978775 | 67978941 | 67978775 | ID=Msa0516470-mRNA-1:exon:17817;Parent=Msa0516470-mRNA-1 |
| chr3_4 | exon | 67979019 | 67979075 | 67979019 | ID=Msa0516470-mRNA-1:exon:17818;Parent=Msa0516470-mRNA-1 |
| chr3_4 | exon | 67979159 | 67979218 | 67979159 | ID=Msa0516470-mRNA-1:exon:17819;Parent=Msa0516470-mRNA-1 |
| chr3_4 | exon | 67979502 | 67979561 | 67979502 | ID=Msa0516470-mRNA-1:exon:17820;Parent=Msa0516470-mRNA-1 |
| chr3_4 | exon | 67980664 | 67981305 | 67980664 | ID=Msa0516470-mRNA-1:exon:17821;Parent=Msa0516470-mRNA-1 |
| chr3_4 | five_prime_UTR | 67978775 | 67978896 | 67978775 | ID=Msa0516470-mRNA-1:five_prime_utr;Parent=Msa0516470-mRNA-1 |
| chr3_4 | CDS | 67978897 | 67978941 | 67978897 | ID=Msa0516470-mRNA-1:cds;Parent=Msa0516470-mRNA-1 |
| chr3_4 | CDS | 67979019 | 67979075 | 67979019 | ID=Msa0516470-mRNA-1:cds;Parent=Msa0516470-mRNA-1 |
| chr3_4 | CDS | 67979159 | 67979218 | 67979159 | ID=Msa0516470-mRNA-1:cds;Parent=Msa0516470-mRNA-1 |
| chr3_4 | CDS | 67979502 | 67979561 | 67979502 | ID=Msa0516470-mRNA-1:cds;Parent=Msa0516470-mRNA-1 |
| chr3_4 | CDS | 67980664 | 67980999 | 67980664 | ID=Msa0516470-mRNA-1:cds;Parent=Msa0516470-mRNA-1 |
| chr3_4 | three_prime_UTR | 67981000 | 67981305 | 67981000 | ID=Msa0516470-mRNA-1:three_prime_utr;Parent=Msa0516470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
