Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967680 | XP_013461426.2 | 87.027 | 185 | 4 | 1 | 1 | 185 | 1 | 165 | 1.99e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967680 | sp|Q8VZV9|PTA7_ARATH | 53.714 | 175 | 58 | 2 | 11 | 185 | 10 | 161 | 4.90e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712500 | Msa0967680 | 0.801045 | 1.083545e-48 | -8.615850e-47 |
| Msa0367370 | Msa0967680 | 0.803124 | 4.048510e-49 | -8.615850e-47 |
| Msa0480150 | Msa0967680 | 0.800668 | 1.293665e-48 | -8.615850e-47 |
| Msa0323990 | Msa0967680 | 0.809104 | 2.231255e-50 | -8.615850e-47 |
| Msa0516470 | Msa0967680 | 0.984193 | 7.434506e-160 | -8.615850e-47 |
| Msa0528870 | Msa0967680 | 0.800752 | 1.243388e-48 | -8.615850e-47 |
| Msa0967680 | Msa1106560 | 0.800379 | 1.481709e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967680 | MtrunA17_Chr3g0127071 | 87.027 | 185 | 4 | 1 | 1 | 185 | 1 | 165 | 1.83e-112 | 317 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967680 | AT5G24314.2 | 54.857 | 175 | 64 | 3 | 11 | 185 | 10 | 169 | 1.99e-64 | 196 |
| Msa0967680 | AT5G24314.1 | 53.714 | 175 | 58 | 2 | 11 | 185 | 10 | 161 | 4.98e-63 | 192 |
Find 59 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCGAAGAGAGAGTAAA+TGG | 0.213475 | 6_3:+97779095 | None:intergenic |
| AGTTTAAAACCTTTCCTTTC+CGG | 0.230202 | 6_3:+97778449 | None:intergenic |
| CACCACTTTCCTTTCGCATT+TGG | 0.243431 | 6_3:+97778843 | None:intergenic |
| TGATTCTCTGCCCTACAAAA+TGG | 0.340113 | 6_3:-97777323 | Msa0967680:CDS |
| AATATGGAGGCGAAGGAAAA+TGG | 0.348814 | 6_3:-97778813 | Msa0967680:intron |
| GAGTCTGATCCCTTCAAACC+TGG | 0.410327 | 6_3:-97777052 | Msa0967680:CDS |
| AGCTGGTGTTTACTGAACTT+TGG | 0.420425 | 6_3:+97779136 | None:intergenic |
| TTTCCGGAAAATGAGCAAAC+GGG | 0.435211 | 6_3:+97778465 | None:intergenic |
| TGAGGGAAAACTCTTGCAAT+TGG | 0.438639 | 6_3:-97777257 | Msa0967680:CDS |
| CTTTCCGGAAAATGAGCAAA+CGG | 0.439938 | 6_3:+97778464 | None:intergenic |
| AAAGTGGTGGACGAAGAATA+TGG | 0.452551 | 6_3:-97778829 | Msa0967680:CDS |
| GGAGCAGGTGAGGAAGATAA+AGG | 0.452829 | 6_3:-97777281 | Msa0967680:CDS |
| TCAGACTCGGCATACGCCTC+TGG | 0.453063 | 6_3:+97777067 | None:intergenic |
| CTCACCTGCTCCTCGAGAAA+AGG | 0.458089 | 6_3:+97777292 | None:intergenic |
| ATAATGAGGCCCAGGTTTGA+AGG | 0.480274 | 6_3:+97777042 | None:intergenic |
| GAGAGCAACATGGATGAGTA+TGG | 0.481625 | 6_3:-97777154 | Msa0967680:CDS |
| GGTGAGGAAGATAAAGGATG+AGG | 0.481739 | 6_3:-97777275 | Msa0967680:CDS |
| CGCCTCTGGACGGTAAAATC+CGG | 0.489373 | 6_3:+97777081 | None:intergenic |
| ATTACTCAAAACATGAAGAA+TGG | 0.511919 | 6_3:+97777117 | None:intergenic |
| GCGAGTTAACACTCAGGCTC+GGG | 0.514482 | 6_3:+97778959 | None:intergenic |
| TGCGAGTTAACACTCAGGCT+CGG | 0.517311 | 6_3:+97778958 | None:intergenic |
| TCAGAAGGGGCTATTAAATG+AGG | 0.524071 | 6_3:+97776776 | None:intergenic |
| TAAAACTCTTTCAAATAATG+AGG | 0.525568 | 6_3:+97777028 | None:intergenic |
| GATTATTCGTTCAAGAATCG+TGG | 0.525884 | 6_3:-97779245 | None:intergenic |
| AAGTCGAAGAGAGAGTAAAT+GGG | 0.538130 | 6_3:+97779096 | None:intergenic |
| TCTTTCAAATAATGAGGCCC+AGG | 0.542211 | 6_3:+97777034 | None:intergenic |
| AGTAATCGAGTGAATGATGC+CGG | 0.544993 | 6_3:-97777100 | Msa0967680:CDS |
| CAGAAGGGGCTATTAAATGA+GGG | 0.552593 | 6_3:+97776777 | None:intergenic |
| GTGAGGAAGATAAAGGATGA+GGG | 0.559910 | 6_3:-97777274 | Msa0967680:CDS |
| TAATTCCGTATCTTGTGTAG+TGG | 0.562359 | 6_3:-97776843 | Msa0967680:three_prime_UTR |
| TAATGAGGCCCAGGTTTGAA+GGG | 0.566321 | 6_3:+97777043 | None:intergenic |
| CAGAAGATAGAATTAAGAGC+TGG | 0.569406 | 6_3:-97778994 | Msa0967680:CDS |
| GACGAAGAATATGGAGGCGA+AGG | 0.570823 | 6_3:-97778820 | Msa0967680:CDS |
| AGTCTGATCCCTTCAAACCT+GGG | 0.572137 | 6_3:-97777051 | Msa0967680:CDS |
| AGTTCAGTAAACACCAGCTA+TGG | 0.573218 | 6_3:-97779132 | Msa0967680:exon |
| ATTATTCGTTCAAGAATCGT+GGG | 0.573686 | 6_3:-97779244 | None:intergenic |
| GAGCCTGAGTGTTAACTCGC+AGG | 0.575752 | 6_3:-97778956 | Msa0967680:intron |
| AATTCCGTATCTTGTGTAGT+GGG | 0.577030 | 6_3:-97776842 | Msa0967680:three_prime_UTR |
| TTTACGCGGAGAGCCATAGC+TGG | 0.585067 | 6_3:+97779119 | None:intergenic |
| TCTTGCAATTGGACATAGAG+AGG | 0.595233 | 6_3:-97777246 | Msa0967680:CDS |
| ATCCAAATGCGAAAGGAAAG+TGG | 0.601949 | 6_3:-97778845 | Msa0967680:CDS |
| AGGTTTGAAGGGATCAGACT+CGG | 0.605147 | 6_3:+97777054 | None:intergenic |
| TTCCGGAAAATGAGCAAACG+GGG | 0.605515 | 6_3:+97778466 | None:intergenic |
| GTTGCTCTCAACATAAGCGT+TGG | 0.607357 | 6_3:+97777168 | None:intergenic |
| CGCTTATGTTGAGAGCAACA+TGG | 0.607844 | 6_3:-97777164 | Msa0967680:CDS |
| TCAAAGTCATCGAGAGCACG+TGG | 0.621106 | 6_3:-97776871 | Msa0967680:three_prime_UTR |
| TGTGAATGAGATAGCAGCTG+AGG | 0.626703 | 6_3:-97777191 | Msa0967680:CDS |
| GATGGTAATCCAAATGCGAA+AGG | 0.635273 | 6_3:-97778852 | Msa0967680:CDS |
| AGAAGGGGCTATTAAATGAG+GGG | 0.655869 | 6_3:+97776778 | None:intergenic |
| ACTCGGCATACGCCTCTGGA+CGG | 0.681095 | 6_3:+97777071 | None:intergenic |
| AGAGAGTAAATGGGTTTACG+CGG | 0.685156 | 6_3:+97779105 | None:intergenic |
| ACATTAGGCTCAATACAAAG+AGG | 0.686108 | 6_3:-97778503 | Msa0967680:intron |
| TAAGCTGAGATGTTACATCA+CGG | 0.686316 | 6_3:-97776981 | Msa0967680:three_prime_UTR |
| CAAATGCGAAAGGAAAGTGG+TGG | 0.689015 | 6_3:-97778842 | Msa0967680:CDS |
| TCCGGAAAATGAGCAAACGG+GGG | 0.704923 | 6_3:+97778467 | None:intergenic |
| TGCATGCATACAAACAACAG+CGG | 0.719288 | 6_3:+97776896 | None:intergenic |
| ATACCTGCGAGTTAACACTC+AGG | 0.734021 | 6_3:+97778953 | None:intergenic |
| AGCAACATGGATGAGTATGG+AGG | 0.751548 | 6_3:-97777151 | Msa0967680:CDS |
| GTGGTGGACGAAGAATATGG+AGG | 0.759179 | 6_3:-97778826 | Msa0967680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACGATTATTATTT+GGG | + | chr6_3:97777239-97777258 | None:intergenic | 10.0% |
| !!! | TTTATTTTACGATTATTATT+TGG | + | chr6_3:97777240-97777259 | None:intergenic | 10.0% |
| !!! | GGAATTTTCTATATAATATT+TGG | + | chr6_3:97776768-97776787 | None:intergenic | 15.0% |
| !!! | TAATTCTAATATTCTAAAGT+TGG | - | chr6_3:97777526-97777545 | Msa0967680:intron | 15.0% |
| !! | CTTATCTCAAAAACTTATAA+AGG | + | chr6_3:97776789-97776808 | None:intergenic | 20.0% |
| !!! | CTTTATAAGTTTTTGAGATA+AGG | - | chr6_3:97776787-97776806 | Msa0967680:three_prime_UTR | 20.0% |
| !!! | ATTAAATATATCTAGCTTGA+AGG | - | chr6_3:97777377-97777396 | Msa0967680:intron | 20.0% |
| !!! | TTAAATATATCTAGCTTGAA+GGG | - | chr6_3:97777378-97777397 | Msa0967680:intron | 20.0% |
| !! | GACACAAATCAAATTTAATT+TGG | + | chr6_3:97778327-97778346 | None:intergenic | 20.0% |
| !! | TAAAACTCTTTCAAATAATG+AGG | + | chr6_3:97778925-97778944 | None:intergenic | 20.0% |
| !! | AGAAAAATATCAAATCAGAA+GGG | + | chr6_3:97779191-97779210 | None:intergenic | 20.0% |
| ! | AAGAAAGATATGAACATTAC+AGG | + | chr6_3:97776882-97776901 | None:intergenic | 25.0% |
| ! | AATTTATACAAACAGGTAAG+AGG | + | chr6_3:97777215-97777234 | None:intergenic | 25.0% |
| ! | TTTGGGAAATTTATACAAAC+AGG | + | chr6_3:97777222-97777241 | None:intergenic | 25.0% |
| !!! | TATTCTAAAGTTGGAAAGTT+AGG | - | chr6_3:97777535-97777554 | Msa0967680:intron | 25.0% |
| !!! | ATTCTAAAGTTGGAAAGTTA+GGG | - | chr6_3:97777536-97777555 | Msa0967680:intron | 25.0% |
| ! | ATTTATTGGATTGCATGTTA+CGG | - | chr6_3:97777590-97777609 | Msa0967680:intron | 25.0% |
| ! | AAGTGTTATAGCTGTTAATT+TGG | + | chr6_3:97777673-97777692 | None:intergenic | 25.0% |
| !!! | AAATGTTTTGGGTTAAAATG+TGG | - | chr6_3:97778157-97778176 | Msa0967680:intron | 25.0% |
| ! | TTGATTGAATGAATGCATAA+TGG | - | chr6_3:97778495-97778514 | Msa0967680:CDS | 25.0% |
| !! | CTTAAATATTCAAGTTCATC+GGG | + | chr6_3:97778575-97778594 | None:intergenic | 25.0% |
| !! | GCTTAAATATTCAAGTTCAT+CGG | + | chr6_3:97778576-97778595 | None:intergenic | 25.0% |
| ! | ATTACTCAAAACATGAAGAA+TGG | + | chr6_3:97778836-97778855 | None:intergenic | 25.0% |
| ! | GAAAAATATCAAATCAGAAG+GGG | + | chr6_3:97779190-97779209 | None:intergenic | 25.0% |
| ! | GAGAAAAATATCAAATCAGA+AGG | + | chr6_3:97779192-97779211 | None:intergenic | 25.0% |
| !!! | TCGATTTTGAAGTAACAGTT+TGG | + | chr6_3:97776924-97776943 | None:intergenic | 30.0% |
| AAATGTGTTTGTAGTTCTCT+TGG | - | chr6_3:97777423-97777442 | Msa0967680:intron | 30.0% | |
| AATGTGTTTGTAGTTCTCTT+GGG | - | chr6_3:97777424-97777443 | Msa0967680:intron | 30.0% | |
| ! | AGTTTAAAACCTTTCCTTTC+CGG | + | chr6_3:97777504-97777523 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTGGAAAGTTAG+GGG | - | chr6_3:97777537-97777556 | Msa0967680:intron | 30.0% |
| TCTAGTGATGTGATTCATTA+AGG | - | chr6_3:97777889-97777908 | Msa0967680:intron | 30.0% | |
| ATTCATTAAGGAACACGATA+AGG | - | chr6_3:97777901-97777920 | Msa0967680:intron | 30.0% | |
| TTCATTAAGGAACACGATAA+GGG | - | chr6_3:97777902-97777921 | Msa0967680:intron | 30.0% | |
| ! | TCCTTTTATATATCCTCTCT+TGG | + | chr6_3:97777964-97777983 | None:intergenic | 30.0% |
| TGATATCATGCAAAACAACA+GGG | + | chr6_3:97778029-97778048 | None:intergenic | 30.0% | |
| ACATTTAGACATTGGGTATA+TGG | + | chr6_3:97778143-97778162 | None:intergenic | 30.0% | |
| ! | TACCCAATGTCTAAATGTTT+TGG | - | chr6_3:97778145-97778164 | Msa0967680:intron | 30.0% |
| ! | ACCCAATGTCTAAATGTTTT+GGG | - | chr6_3:97778146-97778165 | Msa0967680:intron | 30.0% |
| ACCCAAAACATTTAGACATT+GGG | + | chr6_3:97778150-97778169 | None:intergenic | 30.0% | |
| AACCCAAAACATTTAGACAT+TGG | + | chr6_3:97778151-97778170 | None:intergenic | 30.0% | |
| TTGCAAAAAATGCTTTCATG+TGG | - | chr6_3:97778291-97778310 | Msa0967680:intron | 30.0% | |
| TGAGACATATACCAGATATT+GGG | + | chr6_3:97778384-97778403 | None:intergenic | 30.0% | |
| ! | CATTTTGCTGCAGATAAAAA+AGG | - | chr6_3:97778603-97778622 | Msa0967680:intron | 30.0% |
| AAGTCGAAGAGAGAGTAAAT+GGG | + | chr6_3:97776857-97776876 | None:intergenic | 35.0% | |
| AAAGTCGAAGAGAGAGTAAA+TGG | + | chr6_3:97776858-97776877 | None:intergenic | 35.0% | |
| CAGAAGATAGAATTAAGAGC+TGG | - | chr6_3:97776956-97776975 | Msa0967680:three_prime_UTR | 35.0% | |
| ACATTGTGAGACAAGAAAGA+TGG | + | chr6_3:97777175-97777194 | None:intergenic | 35.0% | |
| ACTTTCTCAGTAGTTAGTAG+TGG | - | chr6_3:97777327-97777346 | Msa0967680:CDS | 35.0% | |
| ! | TATATCTAGCTTGAAGGGTT+AGG | - | chr6_3:97777383-97777402 | Msa0967680:intron | 35.0% |
| ACATTAGGCTCAATACAAAG+AGG | - | chr6_3:97777447-97777466 | Msa0967680:intron | 35.0% | |
| ! | TTTGTCGTGGATGGATTTAT+TGG | - | chr6_3:97777576-97777595 | Msa0967680:intron | 35.0% |
| CGATCTGGATTATAGATTTG+TGG | - | chr6_3:97777643-97777662 | Msa0967680:intron | 35.0% | |
| GCCAAGAGAGGATATATAAA+AGG | - | chr6_3:97777960-97777979 | Msa0967680:intron | 35.0% | |
| GTGATATCATGCAAAACAAC+AGG | + | chr6_3:97778030-97778049 | None:intergenic | 35.0% | |
| CAGCAACTACAACAACATAA+AGG | + | chr6_3:97778096-97778115 | None:intergenic | 35.0% | |
| TATGTTGTTGTAGTTGCTGT+TGG | - | chr6_3:97778097-97778116 | Msa0967680:intron | 35.0% | |
| GTCTTTGCTTCTTTCTATCA+TGG | - | chr6_3:97778344-97778363 | Msa0967680:intron | 35.0% | |
| ACATATACCAGATATTGGGA+CGG | + | chr6_3:97778380-97778399 | None:intergenic | 35.0% | |
| GTGAGACATATACCAGATAT+TGG | + | chr6_3:97778385-97778404 | None:intergenic | 35.0% | |
| !! | ATTTTGATGCCATAGTGAAG+TGG | - | chr6_3:97778430-97778449 | Msa0967680:intron | 35.0% |
| TGAATGCATAATGGTTATGC+TGG | - | chr6_3:97778504-97778523 | Msa0967680:intron | 35.0% | |
| ATGATTCATGCTATTGACAC+AGG | - | chr6_3:97778532-97778551 | Msa0967680:intron | 35.0% | |
| TAAGCTGAGATGTTACATCA+CGG | - | chr6_3:97778969-97778988 | Msa0967680:CDS | 35.0% | |
| TAATTCCGTATCTTGTGTAG+TGG | - | chr6_3:97779107-97779126 | Msa0967680:CDS | 35.0% | |
| AATTCCGTATCTTGTGTAGT+GGG | - | chr6_3:97779108-97779127 | Msa0967680:CDS | 35.0% | |
| ! | TTTTCCCACTACACAAGATA+CGG | + | chr6_3:97779115-97779134 | None:intergenic | 35.0% |
| AGCTGGTGTTTACTGAACTT+TGG | + | chr6_3:97776817-97776836 | None:intergenic | 40.0% | |
| AGTTCAGTAAACACCAGCTA+TGG | - | chr6_3:97776818-97776837 | Msa0967680:three_prime_UTR | 40.0% | |
| ! | AGAGAGTAAATGGGTTTACG+CGG | + | chr6_3:97776848-97776867 | None:intergenic | 40.0% |
| CATGCATTTGTTCTGCAAGA+TGG | - | chr6_3:97777080-97777099 | Msa0967680:CDS | 40.0% | |
| GATGGTAATCCAAATGCGAA+AGG | - | chr6_3:97777098-97777117 | Msa0967680:CDS | 40.0% | |
| ATCCAAATGCGAAAGGAAAG+TGG | - | chr6_3:97777105-97777124 | Msa0967680:CDS | 40.0% | |
| !! | AAAGTGGTGGACGAAGAATA+TGG | - | chr6_3:97777121-97777140 | Msa0967680:CDS | 40.0% |
| AATATGGAGGCGAAGGAAAA+TGG | - | chr6_3:97777137-97777156 | Msa0967680:CDS | 40.0% | |
| TGTAGTTCTCTTGGGACATT+AGG | - | chr6_3:97777432-97777451 | Msa0967680:intron | 40.0% | |
| TTTCCGGAAAATGAGCAAAC+GGG | + | chr6_3:97777488-97777507 | None:intergenic | 40.0% | |
| CTTTCCGGAAAATGAGCAAA+CGG | + | chr6_3:97777489-97777508 | None:intergenic | 40.0% | |
| AGAGGTTAAAGAGTTTGTCG+TGG | - | chr6_3:97777563-97777582 | Msa0967680:intron | 40.0% | |
| GTTAAAGAGTTTGTCGTGGA+TGG | - | chr6_3:97777567-97777586 | Msa0967680:intron | 40.0% | |
| GTGAAACAGAATTAGCGATC+TGG | - | chr6_3:97777628-97777647 | Msa0967680:intron | 40.0% | |
| ! | ACTTGTGATGTGATGATGCA+AGG | - | chr6_3:97777689-97777708 | Msa0967680:intron | 40.0% |
| ! | CTTGTGATGTGATGATGCAA+GGG | - | chr6_3:97777690-97777709 | Msa0967680:intron | 40.0% |
| ! | GTGATGATGCAAGGGATTAT+TGG | - | chr6_3:97777698-97777717 | Msa0967680:intron | 40.0% |
| TGATGCAAGGGATTATTGGA+AGG | - | chr6_3:97777702-97777721 | Msa0967680:intron | 40.0% | |
| ! | AATTGCAATGTGTTGCTGCA+AGG | - | chr6_3:97777783-97777802 | Msa0967680:intron | 40.0% |
| AAGGAACACGATAAGGGAAA+AGG | - | chr6_3:97777908-97777927 | Msa0967680:intron | 40.0% | |
| CAACATAAAGGTCACATGCA+TGG | + | chr6_3:97778084-97778103 | None:intergenic | 40.0% | |
| AGTCTAGTGTGATCATTCCT+CGG | - | chr6_3:97778208-97778227 | Msa0967680:intron | 40.0% | |
| AACAACAGTTGGGTCATTAG+GGG | + | chr6_3:97778236-97778255 | None:intergenic | 40.0% | |
| CAACAACAGTTGGGTCATTA+GGG | + | chr6_3:97778237-97778256 | None:intergenic | 40.0% | |
| GTTCATATCGACAAACACCT+CGG | + | chr6_3:97778263-97778282 | None:intergenic | 40.0% | |
| ATGTGCATACCACTTCACTA+TGG | + | chr6_3:97778442-97778461 | None:intergenic | 40.0% | |
| TGATTCTCTGCCCTACAAAA+TGG | - | chr6_3:97778627-97778646 | Msa0967680:intron | 40.0% | |
| GTGAGGAAGATAAAGGATGA+GGG | - | chr6_3:97778676-97778695 | Msa0967680:intron | 40.0% | |
| TGAGGGAAAACTCTTGCAAT+TGG | - | chr6_3:97778693-97778712 | Msa0967680:intron | 40.0% | |
| TCTTGCAATTGGACATAGAG+AGG | - | chr6_3:97778704-97778723 | Msa0967680:intron | 40.0% | |
| AGTAATCGAGTGAATGATGC+CGG | - | chr6_3:97778850-97778869 | Msa0967680:CDS | 40.0% | |
| TCTTTCAAATAATGAGGCCC+AGG | + | chr6_3:97778919-97778938 | None:intergenic | 40.0% | |
| TGCATGCATACAAACAACAG+CGG | + | chr6_3:97779057-97779076 | None:intergenic | 40.0% | |
| AGAAGGGGCTATTAAATGAG+GGG | + | chr6_3:97779175-97779194 | None:intergenic | 40.0% | |
| CAGAAGGGGCTATTAAATGA+GGG | + | chr6_3:97779176-97779195 | None:intergenic | 40.0% | |
| TCAGAAGGGGCTATTAAATG+AGG | + | chr6_3:97779177-97779196 | None:intergenic | 40.0% | |
| ATACCTGCGAGTTAACACTC+AGG | + | chr6_3:97777000-97777019 | None:intergenic | 45.0% | |
| CACCACTTTCCTTTCGCATT+TGG | + | chr6_3:97777110-97777129 | None:intergenic | 45.0% | |
| CAAATGCGAAAGGAAAGTGG+TGG | - | chr6_3:97777108-97777127 | Msa0967680:CDS | 45.0% | |
| TTCCGGAAAATGAGCAAACG+GGG | + | chr6_3:97777487-97777506 | None:intergenic | 45.0% | |
| ! | CGTTTGCTCATTTTCCGGAA+AGG | - | chr6_3:97777487-97777506 | Msa0967680:intron | 45.0% |
| ! | GCTCATTTTCCGGAAAGGAA+AGG | - | chr6_3:97777492-97777511 | Msa0967680:intron | 45.0% |
| TTGGAAAGTTAGGGGACTAG+AGG | - | chr6_3:97777545-97777564 | Msa0967680:intron | 45.0% | |
| CATTGGGTATATGGATCCTC+TGG | + | chr6_3:97778134-97778153 | None:intergenic | 45.0% | |
| ACAACAGTTGGGTCATTAGG+GGG | + | chr6_3:97778235-97778254 | None:intergenic | 45.0% | |
| GCAACAACAGTTGGGTCATT+AGG | + | chr6_3:97778238-97778257 | None:intergenic | 45.0% | |
| CACATATCCGTCCCAATATC+TGG | - | chr6_3:97778370-97778389 | Msa0967680:intron | 45.0% | |
| ! | CACAGGTTTTCACGAGTATC+AGG | - | chr6_3:97778549-97778568 | Msa0967680:intron | 45.0% |
| ! | GGAATGCGCTCCATTTTGTA+GGG | + | chr6_3:97778640-97778659 | None:intergenic | 45.0% |
| ! | AGGAATGCGCTCCATTTTGT+AGG | + | chr6_3:97778641-97778660 | None:intergenic | 45.0% |
| GGTGAGGAAGATAAAGGATG+AGG | - | chr6_3:97778675-97778694 | Msa0967680:intron | 45.0% | |
| TGTGAATGAGATAGCAGCTG+AGG | - | chr6_3:97778759-97778778 | Msa0967680:intron | 45.0% | |
| GTTGCTCTCAACATAAGCGT+TGG | + | chr6_3:97778785-97778804 | None:intergenic | 45.0% | |
| CGCTTATGTTGAGAGCAACA+TGG | - | chr6_3:97778786-97778805 | Msa0967680:intron | 45.0% | |
| GAGAGCAACATGGATGAGTA+TGG | - | chr6_3:97778796-97778815 | Msa0967680:intron | 45.0% | |
| AGCAACATGGATGAGTATGG+AGG | - | chr6_3:97778799-97778818 | Msa0967680:intron | 45.0% | |
| AGGTTTGAAGGGATCAGACT+CGG | + | chr6_3:97778899-97778918 | None:intergenic | 45.0% | |
| AGTCTGATCCCTTCAAACCT+GGG | - | chr6_3:97778899-97778918 | Msa0967680:intron | 45.0% | |
| TAATGAGGCCCAGGTTTGAA+GGG | + | chr6_3:97778910-97778929 | None:intergenic | 45.0% | |
| ATAATGAGGCCCAGGTTTGA+AGG | + | chr6_3:97778911-97778930 | None:intergenic | 45.0% | |
| TGCGAGTTAACACTCAGGCT+CGG | + | chr6_3:97776995-97777014 | None:intergenic | 50.0% | |
| !! | GTGGTGGACGAAGAATATGG+AGG | - | chr6_3:97777124-97777143 | Msa0967680:CDS | 50.0% |
| GACGAAGAATATGGAGGCGA+AGG | - | chr6_3:97777130-97777149 | Msa0967680:CDS | 50.0% | |
| ! | TCCCCCGTTTGCTCATTTTC+CGG | - | chr6_3:97777482-97777501 | Msa0967680:intron | 50.0% |
| TCCGGAAAATGAGCAAACGG+GGG | + | chr6_3:97777486-97777505 | None:intergenic | 50.0% | |
| TGCATGTTACGGAAGTGAGC+TGG | - | chr6_3:97777601-97777620 | Msa0967680:intron | 50.0% | |
| GTTGCTGCAAGGACGAACAT+AGG | - | chr6_3:97777794-97777813 | Msa0967680:intron | 50.0% | |
| AAGGGAAAAGGTAGCGTGAC+AGG | - | chr6_3:97777920-97777939 | Msa0967680:intron | 50.0% | |
| AGGGAAAAGGTAGCGTGACA+GGG | - | chr6_3:97777921-97777940 | Msa0967680:intron | 50.0% | |
| CACCTTGCTTCATTCTCTCG+CGG | - | chr6_3:97778050-97778069 | Msa0967680:intron | 50.0% | |
| ATCCGCGAGAGAATGAAGCA+AGG | + | chr6_3:97778055-97778074 | None:intergenic | 50.0% | |
| ! | GTTGGAGTATCAAGTGCCAG+AGG | - | chr6_3:97778115-97778134 | Msa0967680:intron | 50.0% |
| CCTCGGTAGCAACAACAGTT+GGG | + | chr6_3:97778246-97778265 | None:intergenic | 50.0% | |
| ACCTCGGTAGCAACAACAGT+TGG | + | chr6_3:97778247-97778266 | None:intergenic | 50.0% | |
| ! | CATTCCTTTTCTCGAGGAGC+AGG | - | chr6_3:97778654-97778673 | Msa0967680:intron | 50.0% |
| GGAGCAGGTGAGGAAGATAA+AGG | - | chr6_3:97778669-97778688 | Msa0967680:intron | 50.0% | |
| GAGTCTGATCCCTTCAAACC+TGG | - | chr6_3:97778898-97778917 | Msa0967680:intron | 50.0% | |
| ! | TCAAAGTCATCGAGAGCACG+TGG | - | chr6_3:97779079-97779098 | Msa0967680:intron | 50.0% |
| TTTACGCGGAGAGCCATAGC+TGG | + | chr6_3:97776834-97776853 | None:intergenic | 55.0% | |
| GCGAGTTAACACTCAGGCTC+GGG | + | chr6_3:97776994-97777013 | None:intergenic | 55.0% | |
| GAGCCTGAGTGTTAACTCGC+AGG | - | chr6_3:97776994-97777013 | Msa0967680:three_prime_UTR | 55.0% | |
| AGGTAGCGTGACAGGGAATG+AGG | - | chr6_3:97777928-97777947 | Msa0967680:intron | 55.0% | |
| TAGCGTGACAGGGAATGAGG+AGG | - | chr6_3:97777931-97777950 | Msa0967680:intron | 55.0% | |
| AGGAGGAGAAGAGCCAAGAG+AGG | - | chr6_3:97777948-97777967 | Msa0967680:intron | 55.0% | |
| CGCGAGAGAATGAAGCAAGG+TGG | + | chr6_3:97778052-97778071 | None:intergenic | 55.0% | |
| CCCAACTGTTGTTGCTACCG+AGG | - | chr6_3:97778243-97778262 | Msa0967680:intron | 55.0% | |
| ! | GGAGCGCATTCCTTTTCTCG+AGG | - | chr6_3:97778648-97778667 | Msa0967680:intron | 55.0% |
| CTCACCTGCTCCTCGAGAAA+AGG | + | chr6_3:97778661-97778680 | None:intergenic | 55.0% | |
| ! | CTTTTCTCGAGGAGCAGGTG+AGG | - | chr6_3:97778659-97778678 | Msa0967680:intron | 55.0% |
| ! | TGCCGGATTTTACCGTCCAG+AGG | - | chr6_3:97778867-97778886 | Msa0967680:intron | 55.0% |
| CGCCTCTGGACGGTAAAATC+CGG | + | chr6_3:97778872-97778891 | None:intergenic | 55.0% | |
| TTGGGTCATTAGGGGGTCCG+AGG | + | chr6_3:97778228-97778247 | None:intergenic | 60.0% | |
| ACTCGGCATACGCCTCTGGA+CGG | + | chr6_3:97778882-97778901 | None:intergenic | 60.0% | |
| TCAGACTCGGCATACGCCTC+TGG | + | chr6_3:97778886-97778905 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 97776715 | 97779257 | 97776715 | ID=Msa0967680;Name=Msa0967680 |
| chr6_3 | mRNA | 97776715 | 97779257 | 97776715 | ID=Msa0967680-mRNA-1;Parent=Msa0967680;Name=Msa0967680-mRNA-1;_AED=0.16;_eAED=0.16;_QI=122|0.5|0.8|1|1|1|5|306|185 |
| chr6_3 | exon | 97776715 | 97777356 | 97776715 | ID=Msa0967680-mRNA-1:exon:18204;Parent=Msa0967680-mRNA-1 |
| chr6_3 | exon | 97778459 | 97778518 | 97778459 | ID=Msa0967680-mRNA-1:exon:18203;Parent=Msa0967680-mRNA-1 |
| chr6_3 | exon | 97778814 | 97778873 | 97778814 | ID=Msa0967680-mRNA-1:exon:18202;Parent=Msa0967680-mRNA-1 |
| chr6_3 | exon | 97778957 | 97779013 | 97778957 | ID=Msa0967680-mRNA-1:exon:18201;Parent=Msa0967680-mRNA-1 |
| chr6_3 | exon | 97779091 | 97779257 | 97779091 | ID=Msa0967680-mRNA-1:exon:18200;Parent=Msa0967680-mRNA-1 |
| chr6_3 | five_prime_UTR | 97779136 | 97779257 | 97779136 | ID=Msa0967680-mRNA-1:five_prime_utr;Parent=Msa0967680-mRNA-1 |
| chr6_3 | CDS | 97779091 | 97779135 | 97779091 | ID=Msa0967680-mRNA-1:cds;Parent=Msa0967680-mRNA-1 |
| chr6_3 | CDS | 97778957 | 97779013 | 97778957 | ID=Msa0967680-mRNA-1:cds;Parent=Msa0967680-mRNA-1 |
| chr6_3 | CDS | 97778814 | 97778873 | 97778814 | ID=Msa0967680-mRNA-1:cds;Parent=Msa0967680-mRNA-1 |
| chr6_3 | CDS | 97778459 | 97778518 | 97778459 | ID=Msa0967680-mRNA-1:cds;Parent=Msa0967680-mRNA-1 |
| chr6_3 | CDS | 97777021 | 97777356 | 97777021 | ID=Msa0967680-mRNA-1:cds;Parent=Msa0967680-mRNA-1 |
| chr6_3 | three_prime_UTR | 97776715 | 97777020 | 97776715 | ID=Msa0967680-mRNA-1:three_prime_utr;Parent=Msa0967680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
