Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517150 | XP_003602452.1 | 99.587 | 484 | 1 | 1 | 1 | 483 | 1 | 484 | 0.0 | 994 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517150 | G7J9R1 | 99.587 | 484 | 1 | 1 | 1 | 483 | 1 | 484 | 0.0 | 994 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028340 | Msa0517150 | 0.831987 | 1.222078e-55 | -8.615850e-47 |
| Msa0076170 | Msa0517150 | 0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa0089980 | Msa0517150 | 0.808385 | 3.178820e-50 | -8.615850e-47 |
| Msa0090010 | Msa0517150 | 0.812663 | 3.784850e-51 | -8.615850e-47 |
| Msa0124200 | Msa0517150 | 0.841160 | 5.623936e-58 | -8.615850e-47 |
| Msa0168570 | Msa0517150 | 0.829210 | 5.847010e-55 | -8.615850e-47 |
| Msa0189710 | Msa0517150 | 0.812486 | 4.138861e-51 | -8.615850e-47 |
| Msa0232090 | Msa0517150 | 0.813850 | 2.077544e-51 | -8.615850e-47 |
| Msa0379990 | Msa0517150 | 0.803647 | 3.155077e-49 | -8.615850e-47 |
| Msa0426430 | Msa0517150 | 0.969670 | 1.827408e-130 | -8.615850e-47 |
| Msa0428910 | Msa0517150 | 0.800151 | 1.648994e-48 | -8.615850e-47 |
| Msa0428970 | Msa0517150 | 0.800269 | 1.560030e-48 | -8.615850e-47 |
| Msa0473050 | Msa0517150 | 0.926207 | 6.435400e-91 | -8.615850e-47 |
| Msa0475450 | Msa0517150 | 0.801583 | 8.409861e-49 | -8.615850e-47 |
| Msa0310090 | Msa0517150 | 0.816865 | 4.436543e-52 | -8.615850e-47 |
| Msa0517150 | Msa1065430 | 0.813488 | 2.495248e-51 | -8.615850e-47 |
| Msa0517150 | Msa1114780 | 0.814201 | 1.737954e-51 | -8.615850e-47 |
| Msa0517150 | Msa1161810 | 0.843890 | 1.060527e-58 | -8.615850e-47 |
| Msa0517150 | Msa1170760 | 0.944759 | 1.079314e-103 | -8.615850e-47 |
| Msa0517150 | Msa1267040 | 0.816453 | 5.487279e-52 | -8.615850e-47 |
| Msa0517150 | Msa1267170 | 0.816061 | 6.713321e-52 | -8.615850e-47 |
| Msa0517150 | Msa1268290 | 0.810647 | 1.038865e-50 | -8.615850e-47 |
| Msa0517150 | Msa1403710 | 0.807296 | 5.418685e-50 | -8.615850e-47 |
| Msa0517150 | Msa1425890 | 0.813031 | 3.144114e-51 | -8.615850e-47 |
| Msa0517150 | Msa1440900 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517150 | MtrunA17_Chr3g0128451 | 99.587 | 484 | 1 | 1 | 1 | 483 | 1 | 484 | 0.0 | 994 |
| Msa0517150 | MtrunA17_Chr5g0428701 | 88.608 | 474 | 50 | 4 | 12 | 483 | 17 | 488 | 0.0 | 863 |
| Msa0517150 | MtrunA17_Chr7g0245501 | 74.944 | 443 | 80 | 5 | 44 | 483 | 74 | 488 | 0.0 | 667 |
| Msa0517150 | MtrunA17_Chr4g0057181 | 60.586 | 307 | 92 | 7 | 163 | 463 | 24 | 307 | 1.53e-112 | 335 |
| Msa0517150 | MtrunA17_Chr4g0057191 | 58.000 | 250 | 97 | 3 | 27 | 275 | 12 | 254 | 1.72e-88 | 271 |
| Msa0517150 | MtrunA17_Chr4g0057201 | 59.701 | 201 | 54 | 6 | 289 | 483 | 5 | 184 | 7.77e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517150 | AT3G54190.1 | 83.090 | 479 | 67 | 4 | 5 | 483 | 3 | 467 | 0.0 | 809 |
| Msa0517150 | AT2G38630.1 | 80.585 | 479 | 78 | 4 | 5 | 483 | 4 | 467 | 0.0 | 783 |
| Msa0517150 | AT2G38630.2 | 83.673 | 392 | 59 | 2 | 5 | 396 | 4 | 390 | 0.0 | 672 |
| Msa0517150 | AT2G38630.3 | 78.834 | 326 | 61 | 4 | 5 | 330 | 4 | 321 | 8.30e-180 | 507 |
Find 113 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGTACTTCTGCATTTC+AGG | 0.137058 | 3_4:+68643961 | None:intergenic |
| ACTATTGCTTGCTCTTATTT+TGG | 0.142620 | 3_4:+68642049 | None:intergenic |
| GTAATCTATCGTTACATTAA+TGG | 0.182197 | 3_4:-68641595 | Msa0517150:three_prime_UTR |
| GGCAACTGTGCTCCTCATTT+TGG | 0.199495 | 3_4:+68641950 | None:intergenic |
| CGTTCAACCATCTTCTTTAT+CGG | 0.228283 | 3_4:-68643116 | Msa0517150:CDS |
| GTAGAGTTTGATGATGTAAA+TGG | 0.233273 | 3_4:-68643639 | Msa0517150:CDS |
| GCATTGTTTACAACATATTT+TGG | 0.236339 | 3_4:+68641557 | None:intergenic |
| TTCGAAATGTCAGGAATAAT+TGG | 0.249410 | 3_4:+68642858 | None:intergenic |
| TGATCTATTGTATGAACATT+TGG | 0.260323 | 3_4:-68641757 | Msa0517150:three_prime_UTR |
| ATGAAATCTATACGGGAAAT+AGG | 0.280316 | 3_4:-68641881 | Msa0517150:CDS |
| ACCACAGACGAAGGACCTTT+TGG | 0.282699 | 3_4:+68644297 | None:intergenic |
| ATTCCGCAATATTCGTTTGC+AGG | 0.333249 | 3_4:-68645978 | Msa0517150:intron |
| AGATCGCAATGAAATCTATA+CGG | 0.334449 | 3_4:-68641889 | Msa0517150:CDS |
| CTGTGAGGTGGTGAAGAATA+TGG | 0.356251 | 3_4:-68646191 | Msa0517150:exon |
| GATCTATTGTATGAACATTT+GGG | 0.374965 | 3_4:-68641756 | Msa0517150:three_prime_UTR |
| TAAAATGTTGCTGACATTGA+TGG | 0.401179 | 3_4:+68642088 | None:intergenic |
| ACTGACCGTGATTCTTCTTC+CGG | 0.401954 | 3_4:+68646162 | None:intergenic |
| TCAGTCCCGATGAAGTTATA+AGG | 0.416657 | 3_4:-68644055 | Msa0517150:CDS |
| CGCGGTGGTCGAACGGTGGA+TGG | 0.421145 | 3_4:-68646088 | Msa0517150:CDS |
| AAAAGAGCAAAGCCAGCATC+TGG | 0.421789 | 3_4:+68643693 | None:intergenic |
| GTGAAAGTTTGTTCGTTAGT+TGG | 0.426449 | 3_4:-68641672 | Msa0517150:three_prime_UTR |
| CCTTGTACTTCTGCATTTCA+GGG | 0.428447 | 3_4:+68643962 | None:intergenic |
| CGAGTTCAGAAAATTTGAAA+CGG | 0.432070 | 3_4:-68646384 | Msa0517150:five_prime_UTR |
| TAGAGTTTGATGATGTAAAT+GGG | 0.441258 | 3_4:-68643638 | Msa0517150:CDS |
| TGAATGATACAAACACTTAG+TGG | 0.450276 | 3_4:+68641723 | None:intergenic |
| GAGTTCAGAAAATTTGAAAC+GGG | 0.456315 | 3_4:-68646383 | Msa0517150:five_prime_UTR |
| GGTAATATCTTCCAAGGCTT+CGG | 0.457415 | 3_4:+68641929 | None:intergenic |
| TAAAGAGATGAATTAGGAAG+AGG | 0.466260 | 3_4:+68641530 | None:intergenic |
| ATCTTTATGAAGTGCTATGC+TGG | 0.468525 | 3_4:-68641643 | Msa0517150:three_prime_UTR |
| TCTTATTCCGATAAAGAAGA+TGG | 0.472412 | 3_4:+68643109 | None:intergenic |
| AGACTCCTTATAACTTCATC+GGG | 0.473998 | 3_4:+68644050 | None:intergenic |
| TACTTACATCAAGAATTTGA+AGG | 0.474134 | 3_4:+68643028 | None:intergenic |
| TGACGAATGACGAATTCAAT+TGG | 0.476191 | 3_4:+68646353 | None:intergenic |
| GAGCACAGTTGCCGAAGCCT+TGG | 0.477858 | 3_4:-68641940 | Msa0517150:CDS |
| AGTTGCTGTGACAGTTCTTC+AGG | 0.483179 | 3_4:-68642008 | Msa0517150:CDS |
| CAGCAACTGCACTTGTCCAT+TGG | 0.487604 | 3_4:+68642023 | None:intergenic |
| ATCAAAGATTATTGAGATTG+TGG | 0.488197 | 3_4:-68644253 | Msa0517150:CDS |
| GGCACGGTCTAGTTCATGTC+TGG | 0.488541 | 3_4:-68641860 | Msa0517150:CDS |
| CACCGTTCGACCACCGCGAC+CGG | 0.490444 | 3_4:+68646093 | None:intergenic |
| TCACATACTCTGCTCAAGAT+AGG | 0.490784 | 3_4:-68643608 | Msa0517150:intron |
| GTTACCTGATCTTAATCTCC+TGG | 0.492932 | 3_4:+68643418 | None:intergenic |
| GATTCGTTAACTGAAGGAAA+TGG | 0.502533 | 3_4:-68642686 | Msa0517150:intron |
| CCCTGAAATGCAGAAGTACA+AGG | 0.504167 | 3_4:-68643962 | Msa0517150:CDS |
| CTTCGGCCGCAACAAGGTCT+AGG | 0.508662 | 3_4:+68646139 | None:intergenic |
| ATGTTGTTTGTATTGCAGTC+AGG | 0.511543 | 3_4:+68642764 | None:intergenic |
| ACTAAAAGCACGATCACGCT+TGG | 0.514589 | 3_4:+68646021 | None:intergenic |
| GACGCGAAGAAGACCGGTCG+CGG | 0.514863 | 3_4:-68646106 | Msa0517150:CDS |
| TCGCGTCGACTCTGACTCTT+CGG | 0.529810 | 3_4:+68646122 | None:intergenic |
| TAGACTCCTTATAACTTCAT+CGG | 0.530231 | 3_4:+68644049 | None:intergenic |
| GACCGGTCGCGGTGGTCGAA+CGG | 0.530668 | 3_4:-68646095 | Msa0517150:CDS |
| AGGAACGAGAGAACGAAAAG+AGG | 0.533439 | 3_4:+68646304 | None:intergenic |
| CAGTACCGTCTTCTATTGAA+AGG | 0.534240 | 3_4:+68643148 | None:intergenic |
| AAAGAGATGAATTAGGAAGA+GGG | 0.536541 | 3_4:+68641531 | None:intergenic |
| TTGAATCTGAGTCTCTAAAG+TGG | 0.537211 | 3_4:-68643671 | Msa0517150:CDS |
| TATGATAAGATCCTGGTCAC+TGG | 0.542139 | 3_4:+68642733 | None:intergenic |
| TCTTCTTTATCGGAATAAGA+AGG | 0.542427 | 3_4:-68643106 | Msa0517150:CDS |
| GCGGAATCGTTCTTGCGCAT+CGG | 0.542913 | 3_4:+68645994 | None:intergenic |
| TCTGAGTCTCTAAAGTGGCC+AGG | 0.543538 | 3_4:-68643666 | Msa0517150:CDS |
| AGAGTCGACGCGAAGAAGAC+CGG | 0.545154 | 3_4:-68646112 | Msa0517150:CDS |
| AGATGAATTAGGAAGAGGGT+TGG | 0.545223 | 3_4:+68641535 | None:intergenic |
| ATTACAACAGAAGCAACATC+TGG | 0.545348 | 3_4:+68641613 | None:intergenic |
| GTTACATTAATGGAGCAGCT+TGG | 0.555441 | 3_4:-68641585 | Msa0517150:three_prime_UTR |
| CAGTACGGTTTCGAAATGTC+AGG | 0.555794 | 3_4:+68642849 | None:intergenic |
| TATGATACGCATGACCCAAA+AGG | 0.557194 | 3_4:-68644312 | Msa0517150:CDS |
| GTGAAGAATATGGAAGGTAC+CGG | 0.559590 | 3_4:-68646181 | Msa0517150:exon |
| TCATCAAACTCTACGAAACC+TGG | 0.562829 | 3_4:+68643648 | None:intergenic |
| GATCGCAATGAAATCTATAC+GGG | 0.565753 | 3_4:-68641888 | Msa0517150:CDS |
| AGCAAGCAATAGTTCTCCAA+TGG | 0.570142 | 3_4:-68642039 | Msa0517150:CDS |
| TTTGTCTTACAGCATATACA+AGG | 0.570671 | 3_4:-68643493 | Msa0517150:intron |
| AGACGGGGTAAACCAGATGC+TGG | 0.576116 | 3_4:-68643705 | Msa0517150:CDS |
| ATTGTATGAACATTTGGGAG+CGG | 0.584792 | 3_4:-68641751 | Msa0517150:three_prime_UTR |
| ACGTCCAGGAGATTAAGATC+AGG | 0.585658 | 3_4:-68643422 | Msa0517150:intron |
| CTGACTCTTCGGCCGCAACA+AGG | 0.586343 | 3_4:+68646133 | None:intergenic |
| GTTGTTCAGATACATCAGAC+GGG | 0.587956 | 3_4:-68643721 | Msa0517150:intron |
| AGTAGGATATGATAAGATCC+TGG | 0.588379 | 3_4:+68642726 | None:intergenic |
| TGTTGTTCAGATACATCAGA+CGG | 0.594045 | 3_4:-68643722 | Msa0517150:intron |
| AAAATCCTTTCAATAGAAGA+CGG | 0.594057 | 3_4:-68643153 | Msa0517150:CDS |
| AGTTCCACACAGCCACAGTA+CGG | 0.595254 | 3_4:+68642834 | None:intergenic |
| TCTGACGATTCGTTAACTGA+AGG | 0.595644 | 3_4:-68642692 | Msa0517150:CDS |
| TTCACATGGCGTACATGACA+AGG | 0.597500 | 3_4:+68641690 | None:intergenic |
| GAAAGCATGTCTCCAAAATG+AGG | 0.597812 | 3_4:-68641962 | Msa0517150:CDS |
| TCTTTATCGGAATAAGAAGG+TGG | 0.601059 | 3_4:-68643103 | Msa0517150:CDS |
| GTGGCTGTGTGGAACTTCCG+TGG | 0.603234 | 3_4:-68642827 | Msa0517150:CDS |
| GAATTATTGTTACTGTGAGG+TGG | 0.607227 | 3_4:-68646203 | Msa0517150:five_prime_UTR |
| CCCAAAAGGTCCTTCGTCTG+TGG | 0.607401 | 3_4:-68644298 | Msa0517150:CDS |
| TGCTGTGACAGTTCTTCAGG+CGG | 0.607506 | 3_4:-68642005 | Msa0517150:CDS |
| CATATATATAACCAGTGACC+AGG | 0.608399 | 3_4:-68642744 | Msa0517150:CDS |
| GAGAGCGGTAATATCTTCCA+AGG | 0.611956 | 3_4:+68641923 | None:intergenic |
| CGGTCGCGGTGGTCGAACGG+TGG | 0.613275 | 3_4:-68646092 | Msa0517150:CDS |
| ATCTATACGGGAAATAGGCA+CGG | 0.614529 | 3_4:-68641876 | Msa0517150:CDS |
| GTTTGATGATGTAAATGGGA+AGG | 0.617058 | 3_4:-68643634 | Msa0517150:CDS |
| TAAAGAAAGATAAATGCAGA+AGG | 0.617128 | 3_4:+68642887 | None:intergenic |
| AAAATCAACAACATGATCCC+AGG | 0.618639 | 3_4:+68643204 | None:intergenic |
| ATCAGAAATGGAGTACAACA+TGG | 0.623758 | 3_4:+68643449 | None:intergenic |
| TAACCTGCAAACGAATATTG+CGG | 0.625458 | 3_4:+68645975 | None:intergenic |
| AGTCAGGATGCCACAAGAGG+TGG | 0.633776 | 3_4:+68642780 | None:intergenic |
| GTTTGTGCAGCATTCAGCCG+AGG | 0.639705 | 3_4:-68644192 | Msa0517150:intron |
| TGCAGTCAGGATGCCACAAG+AGG | 0.640084 | 3_4:+68642777 | None:intergenic |
| GCGAAGAAGACCGGTCGCGG+TGG | 0.646902 | 3_4:-68646103 | Msa0517150:CDS |
| AAAGCCAATAAGAAAACACA+AGG | 0.657103 | 3_4:+68641804 | None:intergenic |
| CTAACGAACAAACTTTCACA+TGG | 0.657391 | 3_4:+68641676 | None:intergenic |
| AAGAAGTTACAAGCTCTCCA+CGG | 0.664948 | 3_4:+68642810 | None:intergenic |
| GTCAGTCCTAGACCTTGTTG+CGG | 0.664976 | 3_4:-68646145 | Msa0517150:CDS |
| GTCAGAATCAGCTTTGCAGT+AGG | 0.668522 | 3_4:+68642709 | None:intergenic |
| GACATTTCGAAACCGTACTG+TGG | 0.671777 | 3_4:-68642846 | Msa0517150:CDS |
| GGTGAATTATTGTTACTGTG+AGG | 0.672568 | 3_4:-68646206 | Msa0517150:five_prime_UTR |
| AGGTACCGGAAGAAGAATCA+CGG | 0.678839 | 3_4:-68646167 | Msa0517150:CDS |
| GAGGTGGTGAAGAATATGGA+AGG | 0.692900 | 3_4:-68646187 | Msa0517150:exon |
| AATGGCAATACCACAGACGA+AGG | 0.699297 | 3_4:+68644288 | None:intergenic |
| GAAACCGTACTGTGGCTGTG+TGG | 0.713236 | 3_4:-68642838 | Msa0517150:CDS |
| TGAGTTTCATGAACGAACGA+AGG | 0.721655 | 3_4:+68646284 | None:intergenic |
| ATCTTCGTCATAGAAGAGAG+CGG | 0.733350 | 3_4:+68641908 | None:intergenic |
| TTGTTCAGATACATCAGACG+GGG | 0.739159 | 3_4:-68643720 | Msa0517150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTTTTCTTTTTAAATTA+AGG | - | chr3_4:68642681-68642700 | Msa0517150:intron | 10.0% |
| !!! | TCATTTTTAAAAACATATTA+TGG | + | chr3_4:68642710-68642729 | None:intergenic | 10.0% |
| !!! | ATTTTATTTAAAAAATAGTC+AGG | - | chr3_4:68643420-68643439 | Msa0517150:intron | 10.0% |
| !! | TTAAAAATGAATTACTCTTA+AGG | - | chr3_4:68642720-68642739 | Msa0517150:CDS | 15.0% |
| !!! | ATTCTTTTAAAGTTATGATA+TGG | - | chr3_4:68643222-68643241 | Msa0517150:intron | 15.0% |
| !!! | AGTTTGGAATAAATATTTAA+AGG | + | chr3_4:68645592-68645611 | None:intergenic | 15.0% |
| !! | AAATTAATTGTAATCCAATC+AGG | + | chr3_4:68642149-68642168 | None:intergenic | 20.0% |
| !! | CTTATAATAAGCCTTTATAT+AGG | + | chr3_4:68642202-68642221 | None:intergenic | 20.0% |
| !!! | CATAACTTTAAAAGAATTGA+AGG | + | chr3_4:68643219-68643238 | None:intergenic | 20.0% |
| !!! | TACTTTTTTGTTTGTTTTTG+TGG | - | chr3_4:68643296-68643315 | Msa0517150:intron | 20.0% |
| !! | ATATTGCAAACAAAATGAAA+AGG | + | chr3_4:68643781-68643800 | None:intergenic | 20.0% |
| !! | AAGATATGCAAATATGTATT+TGG | - | chr3_4:68645409-68645428 | Msa0517150:intron | 20.0% |
| !!! | TATGTATATTTTTTGCTGTA+AGG | - | chr3_4:68645752-68645771 | Msa0517150:intron | 20.0% |
| !! | GAAAAATAAAGAGATGAATT+AGG | + | chr3_4:68646400-68646419 | None:intergenic | 20.0% |
| !! | TTTCTTTCTTATACTCGTTT+TGG | - | chr3_4:68642059-68642078 | Msa0517150:CDS | 25.0% |
| ! | TAAACCCTTATCCTATATAA+AGG | - | chr3_4:68642188-68642207 | Msa0517150:intron | 25.0% |
| ! | TAAGCCTTTATATAGGATAA+GGG | + | chr3_4:68642195-68642214 | None:intergenic | 25.0% |
| ! | ATAAGCCTTTATATAGGATA+AGG | + | chr3_4:68642196-68642215 | None:intergenic | 25.0% |
| ! | TTAAATAAGTCAATCCAAAG+AGG | - | chr3_4:68642365-68642384 | Msa0517150:intron | 25.0% |
| ! | AAGAAAATAGTGGTAAGTAT+GGG | + | chr3_4:68642391-68642410 | None:intergenic | 25.0% |
| ! | TAAGAAAATAGTGGTAAGTA+TGG | + | chr3_4:68642392-68642411 | None:intergenic | 25.0% |
| ! | TAGCTATGTTAAGAAAATAG+TGG | + | chr3_4:68642401-68642420 | None:intergenic | 25.0% |
| ! | ATCCTTTGATTATTGATGAA+TGG | - | chr3_4:68642424-68642443 | Msa0517150:intron | 25.0% |
| ! | TTCCATTCATCAATAATCAA+AGG | + | chr3_4:68642429-68642448 | None:intergenic | 25.0% |
| ! | TTGATTATTGATGAATGGAA+TGG | - | chr3_4:68642429-68642448 | Msa0517150:intron | 25.0% |
| !!! | AATGCTTTTTGTATAAAGCA+AGG | - | chr3_4:68642542-68642561 | Msa0517150:intron | 25.0% |
| !!! | ATGCTTTTTGTATAAAGCAA+GGG | - | chr3_4:68642543-68642562 | Msa0517150:intron | 25.0% |
| ! | AACAAACAAAAAAGTAGTAC+AGG | + | chr3_4:68643292-68643311 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGTTTTTGTGG+TGG | - | chr3_4:68643299-68643318 | Msa0517150:intron | 25.0% |
| ! | ATAAATAAATCCATCAGACA+GGG | + | chr3_4:68643581-68643600 | None:intergenic | 25.0% |
| ! | TATAAATAAATCCATCAGAC+AGG | + | chr3_4:68643582-68643601 | None:intergenic | 25.0% |
| !!! | TGTCTGATGGATTTATTTAT+AGG | - | chr3_4:68643581-68643600 | Msa0517150:intron | 25.0% |
| !! | TTTGATCTTTTTCTCAGAAA+TGG | + | chr3_4:68643654-68643673 | None:intergenic | 25.0% |
| ! | ATCAAAGATTATTGAGATTG+TGG | - | chr3_4:68643668-68643687 | Msa0517150:CDS | 25.0% |
| !! | ATTGTGCATTTTGAATGATT+TGG | + | chr3_4:68644103-68644122 | None:intergenic | 25.0% |
| ! | ATGCACAATAACTAAAAGAA+AGG | - | chr3_4:68644114-68644133 | Msa0517150:intron | 25.0% |
| ! | AAAACACAAATACTAAAACC+TGG | + | chr3_4:68644164-68644183 | None:intergenic | 25.0% |
| !!! | TAGAGTTTGATGATGTAAAT+GGG | - | chr3_4:68644283-68644302 | Msa0517150:CDS | 25.0% |
| ! | TATATTATGCAATTATACCC+TGG | + | chr3_4:68644368-68644387 | None:intergenic | 25.0% |
| ! | TATATGCTGTAAGACAAAAA+AGG | + | chr3_4:68644426-68644445 | None:intergenic | 25.0% |
| ! | ATACTCGAAGAAAGTAAAAA+AGG | + | chr3_4:68644652-68644671 | None:intergenic | 25.0% |
| !!! | CTATTGAAAGGATTTTAAGT+GGG | + | chr3_4:68644764-68644783 | None:intergenic | 25.0% |
| !! | TCTATTGAAAGGATTTTAAG+TGG | + | chr3_4:68644765-68644784 | None:intergenic | 25.0% |
| ! | AAAATCCTTTCAATAGAAGA+CGG | - | chr3_4:68644768-68644787 | Msa0517150:intron | 25.0% |
| ! | TACTTACATCAAGAATTTGA+AGG | + | chr3_4:68644896-68644915 | None:intergenic | 25.0% |
| !! | CTCACTTACGTATAAATTTT+AGG | - | chr3_4:68644964-68644983 | Msa0517150:intron | 25.0% |
| ! | TAAAGAAAGATAAATGCAGA+AGG | + | chr3_4:68645037-68645056 | None:intergenic | 25.0% |
| ! | TGACAGAAAAGGAATAAATT+AGG | + | chr3_4:68645268-68645287 | None:intergenic | 25.0% |
| ! | TTATTAGAAAGTGACAGAAA+AGG | + | chr3_4:68645279-68645298 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAACTTGTAGCTT+AGG | - | chr3_4:68645329-68645348 | Msa0517150:intron | 25.0% |
| !!! | CTGAAAATTTAGGTTCTTTT+TGG | - | chr3_4:68645361-68645380 | Msa0517150:intron | 25.0% |
| ! | TTGATCTGCTAAACATAATA+TGG | - | chr3_4:68645675-68645694 | Msa0517150:intron | 25.0% |
| ! | TGATCTATTGTATGAACATT+TGG | - | chr3_4:68646164-68646183 | Msa0517150:CDS | 25.0% |
| ! | GATCTATTGTATGAACATTT+GGG | - | chr3_4:68646165-68646184 | Msa0517150:CDS | 25.0% |
| ! | GTAATCTATCGTTACATTAA+TGG | - | chr3_4:68646326-68646345 | Msa0517150:five_prime_UTR | 25.0% |
| !! | GCATTGTTTACAACATATTT+TGG | + | chr3_4:68646367-68646386 | None:intergenic | 25.0% |
| ! | CGTTTCAAATTTTCTGAACT+CGG | + | chr3_4:68641539-68641558 | None:intergenic | 30.0% |
| CGAGTTCAGAAAATTTGAAA+CGG | - | chr3_4:68641537-68641556 | Msa0517150:three_prime_UTR | 30.0% | |
| ! | GAGTTCAGAAAATTTGAAAC+GGG | - | chr3_4:68641538-68641557 | Msa0517150:three_prime_UTR | 30.0% |
| !! | AATTAGGGTTTTGTACGAAA+AGG | + | chr3_4:68641680-68641699 | None:intergenic | 30.0% |
| CATCTGAAAAACGAGAATTA+GGG | + | chr3_4:68641695-68641714 | None:intergenic | 30.0% | |
| !! | CTAATTCTCGTTTTTCAGAT+GGG | - | chr3_4:68641694-68641713 | Msa0517150:three_prime_UTR | 30.0% |
| TAAACATTTGTAAGGCCATT+CGG | + | chr3_4:68642330-68642349 | None:intergenic | 30.0% | |
| CACTGACATAAACATTTGTA+AGG | + | chr3_4:68642338-68642357 | None:intergenic | 30.0% | |
| CTTACAAATGTTTATGTCAG+TGG | - | chr3_4:68642336-68642355 | Msa0517150:intron | 30.0% | |
| !! | TGCTTTTTGTATAAAGCAAG+GGG | - | chr3_4:68642544-68642563 | Msa0517150:intron | 30.0% |
| ! | AAATGTGATTTTCGTAGTGT+TGG | - | chr3_4:68642613-68642632 | Msa0517150:intron | 30.0% |
| ! | AATGTGATTTTCGTAGTGTT+GGG | - | chr3_4:68642614-68642633 | Msa0517150:intron | 30.0% |
| TCAATGATTGTATTGGAAGA+GGG | - | chr3_4:68642982-68643001 | Msa0517150:intron | 30.0% | |
| GTTGGAAATATAGGAGAAAA+TGG | + | chr3_4:68643155-68643174 | None:intergenic | 30.0% | |
| ! | AAGAATTGAAGGCTTTGTAT+GGG | + | chr3_4:68643208-68643227 | None:intergenic | 30.0% |
| ! | AAAGAATTGAAGGCTTTGTA+TGG | + | chr3_4:68643209-68643228 | None:intergenic | 30.0% |
| TTATGATATGGTCATTGAGA+GGG | - | chr3_4:68643234-68643253 | Msa0517150:intron | 30.0% | |
| !!! | TGAAGTGTGTTTTTTGTTTG+TGG | - | chr3_4:68643350-68643369 | Msa0517150:intron | 30.0% |
| TATCAAAACAGGAGAAACAA+AGG | + | chr3_4:68643507-68643526 | None:intergenic | 30.0% | |
| !! | CTGATGGATTTATTTATAGG+AGG | - | chr3_4:68643584-68643603 | Msa0517150:intron | 30.0% |
| TAGACTCCTTATAACTTCAT+CGG | + | chr3_4:68643875-68643894 | None:intergenic | 30.0% | |
| GGGTAGGAATTATAAAACAA+TGG | + | chr3_4:68644004-68644023 | None:intergenic | 30.0% | |
| AAAACAATATCCTTGAGTGA+GGG | + | chr3_4:68644033-68644052 | None:intergenic | 30.0% | |
| TAAAACAATATCCTTGAGTG+AGG | + | chr3_4:68644034-68644053 | None:intergenic | 30.0% | |
| !!! | TGTATTTTTTCCTTGAGTGA+GGG | + | chr3_4:68644075-68644094 | None:intergenic | 30.0% |
| ATATCAACATTTGCATTTCC+AGG | - | chr3_4:68644143-68644162 | Msa0517150:intron | 30.0% | |
| !! | GTAGAGTTTGATGATGTAAA+TGG | - | chr3_4:68644282-68644301 | Msa0517150:CDS | 30.0% |
| TTTGTCTTACAGCATATACA+AGG | - | chr3_4:68644428-68644447 | Msa0517150:intron | 30.0% | |
| ! | ACAACATGGTATAGTTTTTC+AGG | + | chr3_4:68644461-68644480 | None:intergenic | 30.0% |
| ATCATCAAACAAGAGAAAAG+TGG | + | chr3_4:68644683-68644702 | None:intergenic | 30.0% | |
| TCTTATTCCGATAAAGAAGA+TGG | + | chr3_4:68644815-68644834 | None:intergenic | 30.0% | |
| TCTTCTTTATCGGAATAAGA+AGG | - | chr3_4:68644815-68644834 | Msa0517150:intron | 30.0% | |
| ! | TTTCATTTTCTTGCTTGACA+AGG | + | chr3_4:68644872-68644891 | None:intergenic | 30.0% |
| TTATACGTAAGTGAGATATC+TGG | + | chr3_4:68644959-68644978 | None:intergenic | 30.0% | |
| TTCGAAATGTCAGGAATAAT+TGG | + | chr3_4:68645066-68645085 | None:intergenic | 30.0% | |
| ! | AGAACCTAAATTTTCAGATC+TGG | + | chr3_4:68645358-68645377 | None:intergenic | 30.0% |
| TCAACTAACGAAAAACACAT+GGG | - | chr3_4:68645435-68645454 | Msa0517150:intron | 30.0% | |
| AGAAGATTCATAATCACAGT+AGG | - | chr3_4:68645547-68645566 | Msa0517150:intron | 30.0% | |
| ! | TTTATTCCAAACTGACTCTT+TGG | - | chr3_4:68645599-68645618 | Msa0517150:intron | 30.0% |
| TAAAATGTTGCTGACATTGA+TGG | + | chr3_4:68645836-68645855 | None:intergenic | 30.0% | |
| ! | AATGTCAGCAACATTTTATC+TGG | - | chr3_4:68645838-68645857 | Msa0517150:intron | 30.0% |
| !! | ACTATTGCTTGCTCTTATTT+TGG | + | chr3_4:68645875-68645894 | None:intergenic | 30.0% |
| AGATCGCAATGAAATCTATA+CGG | - | chr3_4:68646032-68646051 | Msa0517150:CDS | 30.0% | |
| ATGAAATCTATACGGGAAAT+AGG | - | chr3_4:68646040-68646059 | Msa0517150:CDS | 30.0% | |
| AAAGCCAATAAGAAAACACA+AGG | + | chr3_4:68646120-68646139 | None:intergenic | 30.0% | |
| !!! | TTCTTATTGGCTTTTCTTCA+TGG | - | chr3_4:68646126-68646145 | Msa0517150:CDS | 30.0% |
| !!! | TCTTATTGGCTTTTCTTCAT+GGG | - | chr3_4:68646127-68646146 | Msa0517150:CDS | 30.0% |
| TGAATGATACAAACACTTAG+TGG | + | chr3_4:68646201-68646220 | None:intergenic | 30.0% | |
| AAAGAGATGAATTAGGAAGA+GGG | + | chr3_4:68646393-68646412 | None:intergenic | 30.0% | |
| TAAAGAGATGAATTAGGAAG+AGG | + | chr3_4:68646394-68646413 | None:intergenic | 30.0% | |
| TGACGAATGACGAATTCAAT+TGG | + | chr3_4:68641571-68641590 | None:intergenic | 35.0% | |
| CCATCTGAAAAACGAGAATT+AGG | + | chr3_4:68641696-68641715 | None:intergenic | 35.0% | |
| !! | CCTAATTCTCGTTTTTCAGA+TGG | - | chr3_4:68641693-68641712 | Msa0517150:three_prime_UTR | 35.0% |
| GGTGAATTATTGTTACTGTG+AGG | - | chr3_4:68641715-68641734 | Msa0517150:three_prime_UTR | 35.0% | |
| GAATTATTGTTACTGTGAGG+TGG | - | chr3_4:68641718-68641737 | Msa0517150:three_prime_UTR | 35.0% | |
| TAACCTGCAAACGAATATTG+CGG | + | chr3_4:68641949-68641968 | None:intergenic | 35.0% | |
| !! | AGGTTGAGTTTGTTAGGTTA+TGG | - | chr3_4:68642015-68642034 | Msa0517150:CDS | 35.0% |
| TATGAAGCTATATGCCTGAT+TGG | - | chr3_4:68642132-68642151 | Msa0517150:intron | 35.0% | |
| !! | GTTGTTTTCACAAGCTATCA+TGG | - | chr3_4:68642243-68642262 | Msa0517150:intron | 35.0% |
| ! | TTTTCATAAGTTCTCCCGAA+TGG | - | chr3_4:68642312-68642331 | Msa0517150:intron | 35.0% |
| AAACATTTGTAAGGCCATTC+GGG | + | chr3_4:68642329-68642348 | None:intergenic | 35.0% | |
| TTTGATTCCCATTGTCACAT+TGG | + | chr3_4:68642577-68642596 | None:intergenic | 35.0% | |
| ATGGGAATCAAAAAGTAGCA+TGG | - | chr3_4:68642585-68642604 | Msa0517150:intron | 35.0% | |
| ! | ATGTGATTTTCGTAGTGTTG+GGG | - | chr3_4:68642615-68642634 | Msa0517150:intron | 35.0% |
| ! | TATGTTTGGATGGATGGTTT+TGG | - | chr3_4:68642638-68642657 | Msa0517150:intron | 35.0% |
| AACTCGCAAACAAATCCTAA+GGG | + | chr3_4:68642830-68642849 | None:intergenic | 35.0% | |
| AAACTCGCAAACAAATCCTA+AGG | + | chr3_4:68642831-68642850 | None:intergenic | 35.0% | |
| ! | TTAGGATTTGTTTGCGAGTT+TGG | - | chr3_4:68642830-68642849 | Msa0517150:CDS | 35.0% |
| AAGAAACAGATGACATTGAG+AGG | - | chr3_4:68642900-68642919 | Msa0517150:CDS | 35.0% | |
| AGAAACAGATGACATTGAGA+GGG | - | chr3_4:68642901-68642920 | Msa0517150:CDS | 35.0% | |
| AATACAAAATCCTCCTCAGT+TGG | - | chr3_4:68642953-68642972 | Msa0517150:intron | 35.0% | |
| ATACAAAATCCTCCTCAGTT+GGG | - | chr3_4:68642954-68642973 | Msa0517150:intron | 35.0% | |
| CTCAATGATTGTATTGGAAG+AGG | - | chr3_4:68642981-68643000 | Msa0517150:intron | 35.0% | |
| ! | ATTGTATTGGAAGAGGGTTT+TGG | - | chr3_4:68642988-68643007 | Msa0517150:intron | 35.0% |
| ! | TTGTATTGGAAGAGGGTTTT+GGG | - | chr3_4:68642989-68643008 | Msa0517150:intron | 35.0% |
| GTTATGATATGGTCATTGAG+AGG | - | chr3_4:68643233-68643252 | Msa0517150:intron | 35.0% | |
| TATGATATGGTCATTGAGAG+GGG | - | chr3_4:68643235-68643254 | Msa0517150:intron | 35.0% | |
| TCATGACTCAACAGTAATAC+AGG | + | chr3_4:68643333-68643352 | None:intergenic | 35.0% | |
| AAATCCTGACTAAACACAGT+GGG | + | chr3_4:68643394-68643413 | None:intergenic | 35.0% | |
| AAAATCCTGACTAAACACAG+TGG | + | chr3_4:68643395-68643414 | None:intergenic | 35.0% | |
| CATGTCTTGCTTATCAAAAC+AGG | + | chr3_4:68643518-68643537 | None:intergenic | 35.0% | |
| AGACTCCTTATAACTTCATC+GGG | + | chr3_4:68643874-68643893 | None:intergenic | 35.0% | |
| AAACAATATCCTTGAGTGAG+GGG | + | chr3_4:68644032-68644051 | None:intergenic | 35.0% | |
| !!! | CTGTATTTTTTCCTTGAGTG+AGG | + | chr3_4:68644076-68644095 | None:intergenic | 35.0% |
| TGTTGTTCAGATACATCAGA+CGG | - | chr3_4:68644199-68644218 | Msa0517150:CDS | 35.0% | |
| ! | TTGAATCTGAGTCTCTAAAG+TGG | - | chr3_4:68644250-68644269 | Msa0517150:CDS | 35.0% |
| !! | GTTTGATGATGTAAATGGGA+AGG | - | chr3_4:68644287-68644306 | Msa0517150:CDS | 35.0% |
| ATCAGAAATGGAGTACAACA+TGG | + | chr3_4:68644475-68644494 | None:intergenic | 35.0% | |
| ! | CTGGACGTTTTTATCAGAAA+TGG | + | chr3_4:68644487-68644506 | None:intergenic | 35.0% |
| CATTTCTGATAAAAACGTCC+AGG | - | chr3_4:68644485-68644504 | Msa0517150:intron | 35.0% | |
| ! | TCAGGTAACTTTTCTTGATG+TGG | - | chr3_4:68644517-68644536 | Msa0517150:intron | 35.0% |
| AGAAAACTCTTTCGTAAACG+CGG | - | chr3_4:68644556-68644575 | Msa0517150:intron | 35.0% | |
| TGATTTCTCGTTATTAGTCC+TGG | - | chr3_4:68644699-68644718 | Msa0517150:intron | 35.0% | |
| GATTTCTCGTTATTAGTCCT+GGG | - | chr3_4:68644700-68644719 | Msa0517150:intron | 35.0% | |
| AAAATCAACAACATGATCCC+AGG | + | chr3_4:68644720-68644739 | None:intergenic | 35.0% | |
| !! | AAAGGATTTTAAGTGGGACA+TGG | + | chr3_4:68644758-68644777 | None:intergenic | 35.0% |
| CGTTCAACCATCTTCTTTAT+CGG | - | chr3_4:68644805-68644824 | Msa0517150:intron | 35.0% | |
| TCTTTATCGGAATAAGAAGG+TGG | - | chr3_4:68644818-68644837 | Msa0517150:intron | 35.0% | |
| ! | AGAGCTTGTAACTTCTTTTG+AGG | - | chr3_4:68645117-68645136 | Msa0517150:intron | 35.0% |
| ! | ATGTTGTTTGTATTGCAGTC+AGG | + | chr3_4:68645160-68645179 | None:intergenic | 35.0% |
| CATATATATAACCAGTGACC+AGG | - | chr3_4:68645177-68645196 | Msa0517150:intron | 35.0% | |
| AGTAGGATATGATAAGATCC+TGG | + | chr3_4:68645198-68645217 | None:intergenic | 35.0% | |
| GATTCGTTAACTGAAGGAAA+TGG | - | chr3_4:68645235-68645254 | Msa0517150:intron | 35.0% | |
| ATACACATTGTGTGAGACAA+TGG | - | chr3_4:68645298-68645317 | Msa0517150:intron | 35.0% | |
| TACACATTGTGTGAGACAAT+GGG | - | chr3_4:68645299-68645318 | Msa0517150:intron | 35.0% | |
| GTCACCAGATCTGAAAATTT+AGG | - | chr3_4:68645351-68645370 | Msa0517150:intron | 35.0% | |
| CTCAACTAACGAAAAACACA+TGG | - | chr3_4:68645434-68645453 | Msa0517150:intron | 35.0% | |
| CAACTAACGAAAAACACATG+GGG | - | chr3_4:68645436-68645455 | Msa0517150:intron | 35.0% | |
| AACTAACGAAAAACACATGG+GGG | - | chr3_4:68645437-68645456 | Msa0517150:intron | 35.0% | |
| AAAAACACATGGGGGTTTAT+TGG | - | chr3_4:68645445-68645464 | Msa0517150:intron | 35.0% | |
| ! | TTGGTGGTTATGAAGAAAGA+AGG | - | chr3_4:68645464-68645483 | Msa0517150:intron | 35.0% |
| TGCAGAAACTCATTTCAACT+TGG | - | chr3_4:68645511-68645530 | Msa0517150:intron | 35.0% | |
| ACCAAAAGAATACCAACTCT+TGG | - | chr3_4:68645632-68645651 | Msa0517150:intron | 35.0% | |
| TTAGCAGATCAAGTCAAAAC+CGG | + | chr3_4:68645667-68645686 | None:intergenic | 35.0% | |
| AGGAGCAACTATGTTCATAA+AGG | - | chr3_4:68645772-68645791 | Msa0517150:intron | 35.0% | |
| GATCGCAATGAAATCTATAC+GGG | - | chr3_4:68646033-68646052 | Msa0517150:CDS | 35.0% | |
| ! | GTTGCCTTGTGTTTTCTTAT+TGG | - | chr3_4:68646113-68646132 | Msa0517150:CDS | 35.0% |
| ATTGTATGAACATTTGGGAG+CGG | - | chr3_4:68646170-68646189 | Msa0517150:CDS | 35.0% | |
| CTAACGAACAAACTTTCACA+TGG | + | chr3_4:68646248-68646267 | None:intergenic | 35.0% | |
| ! | GTGAAAGTTTGTTCGTTAGT+TGG | - | chr3_4:68646249-68646268 | Msa0517150:five_prime_UTR | 35.0% |
| ! | ATCTTTATGAAGTGCTATGC+TGG | - | chr3_4:68646278-68646297 | Msa0517150:five_prime_UTR | 35.0% |
| ATTACAACAGAAGCAACATC+TGG | + | chr3_4:68646311-68646330 | None:intergenic | 35.0% | |
| TGAGTTTCATGAACGAACGA+AGG | + | chr3_4:68641640-68641659 | None:intergenic | 40.0% | |
| ! | GTGAAGAATATGGAAGGTAC+CGG | - | chr3_4:68641740-68641759 | Msa0517150:three_prime_UTR | 40.0% |
| ATTCCGCAATATTCGTTTGC+AGG | - | chr3_4:68641943-68641962 | Msa0517150:CDS | 40.0% | |
| TTTCGTGTTTCCATTTCACG+AGG | - | chr3_4:68641995-68642014 | Msa0517150:CDS | 40.0% | |
| ACAAACTCAACCTCGTGAAA+TGG | + | chr3_4:68642008-68642027 | None:intergenic | 40.0% | |
| ! | TTCACGAGGTTGAGTTTGTT+AGG | - | chr3_4:68642009-68642028 | Msa0517150:CDS | 40.0% |
| AAGCTATCATGGAGAGCTTA+TGG | - | chr3_4:68642254-68642273 | Msa0517150:intron | 40.0% | |
| GCTGCATATGCTTATACTAG+TGG | + | chr3_4:68642500-68642519 | None:intergenic | 40.0% | |
| TAGTATAAGCATATGCAGCC+TGG | - | chr3_4:68642501-68642520 | Msa0517150:intron | 40.0% | |
| TGTGTCACCAATGTGACAAT+GGG | - | chr3_4:68642567-68642586 | Msa0517150:intron | 40.0% | |
| !!! | TTTGGATGGATGGTTTTGGA+GGG | - | chr3_4:68642642-68642661 | Msa0517150:intron | 40.0% |
| ! | TTTGGGAGTTGTGTTTTGCA+AGG | + | chr3_4:68642803-68642822 | None:intergenic | 40.0% |
| ! | CAAATCCTAAGGGTACGTTT+GGG | + | chr3_4:68642820-68642839 | None:intergenic | 40.0% |
| ! | ACAAATCCTAAGGGTACGTT+TGG | + | chr3_4:68642821-68642840 | None:intergenic | 40.0% |
| ! | GATTTGTTTGCGAGTTTGGA+GGG | - | chr3_4:68642834-68642853 | Msa0517150:CDS | 40.0% |
| ATTTGTTTGCGAGTTTGGAG+GGG | - | chr3_4:68642835-68642854 | Msa0517150:CDS | 40.0% | |
| GAAACAGATGACATTGAGAG+GGG | - | chr3_4:68642902-68642921 | Msa0517150:CDS | 40.0% | |
| TACAAAATCCTCCTCAGTTG+GGG | - | chr3_4:68642955-68642974 | Msa0517150:intron | 40.0% | |
| GGGGAACTCAATGATTGTAT+TGG | - | chr3_4:68642975-68642994 | Msa0517150:intron | 40.0% | |
| ! | TGTATTGGAAGAGGGTTTTG+GGG | - | chr3_4:68642990-68643009 | Msa0517150:intron | 40.0% |
| ! | CTTTGGAGGGTTGGAAATAT+AGG | + | chr3_4:68643164-68643183 | None:intergenic | 40.0% |
| GGGTTGAGAGAATACAGATT+GGG | - | chr3_4:68643255-68643274 | Msa0517150:intron | 40.0% | |
| GGTTGAGAGAATACAGATTG+GGG | - | chr3_4:68643256-68643275 | Msa0517150:intron | 40.0% | |
| GTTGAGAGAATACAGATTGG+GGG | - | chr3_4:68643257-68643276 | Msa0517150:intron | 40.0% | |
| ATTTCCCACTGTGTTTAGTC+AGG | - | chr3_4:68643387-68643406 | Msa0517150:intron | 40.0% | |
| TATGATACGCATGACCCAAA+AGG | - | chr3_4:68643609-68643628 | Msa0517150:CDS | 40.0% | |
| !! | ACCAGTTACTAGTTCTACCT+CGG | + | chr3_4:68643749-68643768 | None:intergenic | 40.0% |
| TCAGTCCCGATGAAGTTATA+AGG | - | chr3_4:68643866-68643885 | Msa0517150:intron | 40.0% | |
| CCTTGTACTTCTGCATTTCA+GGG | + | chr3_4:68643962-68643981 | None:intergenic | 40.0% | |
| TCCTTGTACTTCTGCATTTC+AGG | + | chr3_4:68643963-68643982 | None:intergenic | 40.0% | |
| GTTGTTCAGATACATCAGAC+GGG | - | chr3_4:68644200-68644219 | Msa0517150:CDS | 40.0% | |
| TTGTTCAGATACATCAGACG+GGG | - | chr3_4:68644201-68644220 | Msa0517150:CDS | 40.0% | |
| TCATCAAACTCTACGAAACC+TGG | + | chr3_4:68644276-68644295 | None:intergenic | 40.0% | |
| TCACATACTCTGCTCAAGAT+AGG | - | chr3_4:68644313-68644332 | Msa0517150:CDS | 40.0% | |
| ! | TCCTGAAACTTCTTTTGCCA+GGG | - | chr3_4:68644348-68644367 | Msa0517150:intron | 40.0% |
| GTTACCTGATCTTAATCTCC+TGG | + | chr3_4:68644506-68644525 | None:intergenic | 40.0% | |
| TCGTAAACGCGGTTTATAGT+TGG | - | chr3_4:68644567-68644586 | Msa0517150:intron | 40.0% | |
| CAGTACCGTCTTCTATTGAA+AGG | + | chr3_4:68644776-68644795 | None:intergenic | 40.0% | |
| AAGAAGTTACAAGCTCTCCA+CGG | + | chr3_4:68645114-68645133 | None:intergenic | 40.0% | |
| TATGATAAGATCCTGGTCAC+TGG | + | chr3_4:68645191-68645210 | None:intergenic | 40.0% | |
| TCTGACGATTCGTTAACTGA+AGG | - | chr3_4:68645229-68645248 | Msa0517150:intron | 40.0% | |
| ATGATGCCAAAGAGTCAGTT+TGG | + | chr3_4:68645608-68645627 | None:intergenic | 40.0% | |
| !!! | GCCAAGAGTTGGTATTCTTT+TGG | + | chr3_4:68645636-68645655 | None:intergenic | 40.0% |
| !!! | CAACTCTTGGCTCTTTTTTC+CGG | - | chr3_4:68645645-68645664 | Msa0517150:intron | 40.0% |
| !! | TTCATAAAGGCAGTACTGAC+AGG | - | chr3_4:68645785-68645804 | Msa0517150:intron | 40.0% |
| ! | GCTCTGCTAATTTTATGCAG+CGG | - | chr3_4:68645807-68645826 | Msa0517150:intron | 40.0% |
| ! | CTCTGCTAATTTTATGCAGC+GGG | - | chr3_4:68645808-68645827 | Msa0517150:intron | 40.0% |
| AGCAAGCAATAGTTCTCCAA+TGG | - | chr3_4:68645882-68645901 | Msa0517150:intron | 40.0% | |
| ! | GAAAGCATGTCTCCAAAATG+AGG | - | chr3_4:68645959-68645978 | Msa0517150:intron | 40.0% |
| GGTAATATCTTCCAAGGCTT+CGG | + | chr3_4:68645995-68646014 | None:intergenic | 40.0% | |
| ATCTTCGTCATAGAAGAGAG+CGG | + | chr3_4:68646016-68646035 | None:intergenic | 40.0% | |
| ATCTATACGGGAAATAGGCA+CGG | - | chr3_4:68646045-68646064 | Msa0517150:CDS | 40.0% | |
| GTTACATTAATGGAGCAGCT+TGG | - | chr3_4:68646336-68646355 | Msa0517150:five_prime_UTR | 40.0% | |
| AGATGAATTAGGAAGAGGGT+TGG | + | chr3_4:68646389-68646408 | None:intergenic | 40.0% | |
| AGGAACGAGAGAACGAAAAG+AGG | + | chr3_4:68641620-68641639 | None:intergenic | 45.0% | |
| CTGTGAGGTGGTGAAGAATA+TGG | - | chr3_4:68641730-68641749 | Msa0517150:three_prime_UTR | 45.0% | |
| GAGGTGGTGAAGAATATGGA+AGG | - | chr3_4:68641734-68641753 | Msa0517150:three_prime_UTR | 45.0% | |
| !! | AGGTACCGGAAGAAGAATCA+CGG | - | chr3_4:68641754-68641773 | Msa0517150:three_prime_UTR | 45.0% |
| ACTGACCGTGATTCTTCTTC+CGG | + | chr3_4:68641762-68641781 | None:intergenic | 45.0% | |
| ! | ACTAAAAGCACGATCACGCT+TGG | + | chr3_4:68641903-68641922 | None:intergenic | 45.0% |
| GAATACAAGCATCAGACACC+AGG | + | chr3_4:68642522-68642541 | None:intergenic | 45.0% | |
| GTGTGTCACCAATGTGACAA+TGG | - | chr3_4:68642566-68642585 | Msa0517150:intron | 45.0% | |
| ! | TCGTAGTGTTGGGGTATGTT+TGG | - | chr3_4:68642624-68642643 | Msa0517150:intron | 45.0% |
| ! | AGTGTTGGGGTATGTTTGGA+TGG | - | chr3_4:68642628-68642647 | Msa0517150:intron | 45.0% |
| TTGGGGTATGTTTGGATGGA+TGG | - | chr3_4:68642632-68642651 | Msa0517150:intron | 45.0% | |
| !!! | GTTTGGATGGATGGTTTTGG+AGG | - | chr3_4:68642641-68642660 | Msa0517150:intron | 45.0% |
| !!! | TTGGATGGATGGTTTTGGAG+GGG | - | chr3_4:68642643-68642662 | Msa0517150:intron | 45.0% |
| ! | GGATTTGTTTGCGAGTTTGG+AGG | - | chr3_4:68642833-68642852 | Msa0517150:CDS | 45.0% |
| TTTGTTTGCGAGTTTGGAGG+GGG | - | chr3_4:68642836-68642855 | Msa0517150:CDS | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | - | chr3_4:68642877-68642896 | Msa0517150:CDS | 45.0% | |
| ACAAAATCCTCCTCAGTTGG+GGG | - | chr3_4:68642956-68642975 | Msa0517150:intron | 45.0% | |
| !! | GTATTGGAAGAGGGTTTTGG+GGG | - | chr3_4:68642991-68643010 | Msa0517150:intron | 45.0% |
| !!! | TATTGGAAGAGGGTTTTGGG+GGG | - | chr3_4:68642992-68643011 | Msa0517150:intron | 45.0% |
| CTTTGTATGGGAGTTTGGAG+GGG | + | chr3_4:68643196-68643215 | None:intergenic | 45.0% | |
| GCTTTGTATGGGAGTTTGGA+GGG | + | chr3_4:68643197-68643216 | None:intergenic | 45.0% | |
| ! | GAAGGCTTTGTATGGGAGTT+TGG | + | chr3_4:68643201-68643220 | None:intergenic | 45.0% |
| GGGGTTGAGAGAATACAGAT+TGG | - | chr3_4:68643254-68643273 | Msa0517150:intron | 45.0% | |
| AATGGCAATACCACAGACGA+AGG | + | chr3_4:68643636-68643655 | None:intergenic | 45.0% | |
| ! | CCCTGAAATGCAGAAGTACA+AGG | - | chr3_4:68643959-68643978 | Msa0517150:CDS | 45.0% |
| TCCTTGAGTGAGGGTAGTAA+GGG | + | chr3_4:68644066-68644085 | None:intergenic | 45.0% | |
| TTCCTTGAGTGAGGGTAGTA+AGG | + | chr3_4:68644067-68644086 | None:intergenic | 45.0% | |
| AAAAGAGCAAAGCCAGCATC+TGG | + | chr3_4:68644231-68644250 | None:intergenic | 45.0% | |
| ! | GTCCTGAAACTTCTTTTGCC+AGG | - | chr3_4:68644347-68644366 | Msa0517150:intron | 45.0% |
| ACCCTGGCAAAAGAAGTTTC+AGG | + | chr3_4:68644352-68644371 | None:intergenic | 45.0% | |
| ACGTCCAGGAGATTAAGATC+AGG | - | chr3_4:68644499-68644518 | Msa0517150:intron | 45.0% | |
| ! | ACGCGGTTTATAGTTGGTCT+TGG | - | chr3_4:68644573-68644592 | Msa0517150:intron | 45.0% |
| CAGTACGGTTTCGAAATGTC+AGG | + | chr3_4:68645075-68645094 | None:intergenic | 45.0% | |
| GACATTTCGAAACCGTACTG+TGG | - | chr3_4:68645075-68645094 | Msa0517150:intron | 45.0% | |
| GTCAGAATCAGCTTTGCAGT+AGG | + | chr3_4:68645215-68645234 | None:intergenic | 45.0% | |
| AACACATGGGGGTTTATTGG+TGG | - | chr3_4:68645448-68645467 | Msa0517150:intron | 45.0% | |
| CGGAAAAAAGAGCCAAGAGT+TGG | + | chr3_4:68645647-68645666 | None:intergenic | 45.0% | |
| AGTTGCTGTGACAGTTCTTC+AGG | - | chr3_4:68645913-68645932 | Msa0517150:intron | 45.0% | |
| GAGAGCGGTAATATCTTCCA+AGG | + | chr3_4:68646001-68646020 | None:intergenic | 45.0% | |
| TTCACATGGCGTACATGACA+AGG | + | chr3_4:68646234-68646253 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTAAAATATCAAAT+AGG | - | chr3_4:68642758-68642777 | Msa0517150:CDS | 5.0% |
| GTCAGTCCTAGACCTTGTTG+CGG | - | chr3_4:68641776-68641795 | Msa0517150:three_prime_UTR | 50.0% | |
| GTGGTAAGTATGGGCCTCTT+TGG | + | chr3_4:68642382-68642401 | None:intergenic | 50.0% | |
| CAACTCCCAAACGTACCCTT+AGG | - | chr3_4:68642812-68642831 | Msa0517150:CDS | 50.0% | |
| AGGGGCTTGGGAAAAAAGGA+AGG | - | chr3_4:68642868-68642887 | Msa0517150:CDS | 50.0% | |
| CAGATGACATTGAGAGGGGA+AGG | - | chr3_4:68642906-68642925 | Msa0517150:CDS | 50.0% | |
| TCATTGAGTTCCCCCAACTG+AGG | + | chr3_4:68642969-68642988 | None:intergenic | 50.0% | |
| !!! | AAGAGGGTTTTGGGGGGTTT+TGG | - | chr3_4:68642998-68643017 | Msa0517150:intron | 50.0% |
| ! | GGCTTTGTATGGGAGTTTGG+AGG | + | chr3_4:68643198-68643217 | None:intergenic | 50.0% |
| AGACAGGGCACAACATGTGA+GGG | + | chr3_4:68643566-68643585 | None:intergenic | 50.0% | |
| ACATGTTGTGCCCTGTCTGA+TGG | - | chr3_4:68643568-68643587 | Msa0517150:intron | 50.0% | |
| ! | CCACAGACGAAGGACCTTTT+GGG | + | chr3_4:68643626-68643645 | None:intergenic | 50.0% |
| ! | ACCACAGACGAAGGACCTTT+TGG | + | chr3_4:68643627-68643646 | None:intergenic | 50.0% |
| ! | GTTTTCGCTCTCGCACAATC+TGG | - | chr3_4:68643705-68643724 | Msa0517150:CDS | 50.0% |
| GCCGAGGTAGAACTAGTAAC+TGG | - | chr3_4:68643745-68643764 | Msa0517150:intron | 50.0% | |
| TGAGTGAGGGTAGTAAGGGA+AGG | + | chr3_4:68644062-68644081 | None:intergenic | 50.0% | |
| TCCCTTACTACCCTCACTCA+AGG | - | chr3_4:68644062-68644081 | Msa0517150:CDS | 50.0% | |
| !! | TCTGAGTCTCTAAAGTGGCC+AGG | - | chr3_4:68644255-68644274 | Msa0517150:CDS | 50.0% |
| AGTTCCACACAGCCACAGTA+CGG | + | chr3_4:68645090-68645109 | None:intergenic | 50.0% | |
| !! | CTTTTGAGGACCACCTCTTG+TGG | - | chr3_4:68645131-68645150 | Msa0517150:intron | 50.0% |
| CAGCAACTGCACTTGTCCAT+TGG | + | chr3_4:68645901-68645920 | None:intergenic | 50.0% | |
| TGCTGTGACAGTTCTTCAGG+CGG | - | chr3_4:68645916-68645935 | Msa0517150:intron | 50.0% | |
| ! | GGCAACTGTGCTCCTCATTT+TGG | + | chr3_4:68645974-68645993 | None:intergenic | 50.0% |
| !! | TCGCGTCGACTCTGACTCTT+CGG | + | chr3_4:68641802-68641821 | None:intergenic | 55.0% |
| AGAGTCGACGCGAAGAAGAC+CGG | - | chr3_4:68641809-68641828 | Msa0517150:three_prime_UTR | 55.0% | |
| GCGGAATCGTTCTTGCGCAT+CGG | + | chr3_4:68641930-68641949 | None:intergenic | 55.0% | |
| !!! | GATGGATGGTTTTGGAGGGG+AGG | - | chr3_4:68642646-68642665 | Msa0517150:intron | 55.0% |
| !!! | TGGTTTTGGAGGGGAGGAGA+AGG | - | chr3_4:68642652-68642671 | Msa0517150:intron | 55.0% |
| TTTGCGAGTTTGGAGGGGGA+GGG | - | chr3_4:68642840-68642859 | Msa0517150:CDS | 55.0% | |
| ! | ACATTGAGAGGGGAAGGCGT+TGG | - | chr3_4:68642912-68642931 | Msa0517150:CDS | 55.0% |
| !! | CATTGAGAGGGGAAGGCGTT+GGG | - | chr3_4:68642913-68642932 | Msa0517150:CDS | 55.0% |
| !! | ATTGAGAGGGGAAGGCGTTG+GGG | - | chr3_4:68642914-68642933 | Msa0517150:CDS | 55.0% |
| TTGAGTTCCCCCAACTGAGG+AGG | + | chr3_4:68642966-68642985 | None:intergenic | 55.0% | |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | - | chr3_4:68643001-68643020 | Msa0517150:intron | 55.0% |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | - | chr3_4:68643002-68643021 | Msa0517150:intron | 55.0% |
| TATGGGAGTTTGGAGGGGAG+GGG | + | chr3_4:68643191-68643210 | None:intergenic | 55.0% | |
| GTATGGGAGTTTGGAGGGGA+GGG | + | chr3_4:68643192-68643211 | None:intergenic | 55.0% | |
| TGTATGGGAGTTTGGAGGGG+AGG | + | chr3_4:68643193-68643212 | None:intergenic | 55.0% | |
| CAGACAGGGCACAACATGTG+AGG | + | chr3_4:68643567-68643586 | None:intergenic | 55.0% | |
| CCCAAAAGGTCCTTCGTCTG+TGG | - | chr3_4:68643623-68643642 | Msa0517150:CDS | 55.0% | |
| GTTTGTGCAGCATTCAGCCG+AGG | - | chr3_4:68643729-68643748 | Msa0517150:intron | 55.0% | |
| TCCTTGAGTGAGGGGAGTGA+GGG | + | chr3_4:68644024-68644043 | None:intergenic | 55.0% | |
| ATCCTTGAGTGAGGGGAGTG+AGG | + | chr3_4:68644025-68644044 | None:intergenic | 55.0% | |
| AGACGGGGTAAACCAGATGC+TGG | - | chr3_4:68644216-68644235 | Msa0517150:CDS | 55.0% | |
| GAAACCGTACTGTGGCTGTG+TGG | - | chr3_4:68645083-68645102 | Msa0517150:intron | 55.0% | |
| AGTCAGGATGCCACAAGAGG+TGG | + | chr3_4:68645144-68645163 | None:intergenic | 55.0% | |
| TGCAGTCAGGATGCCACAAG+AGG | + | chr3_4:68645147-68645166 | None:intergenic | 55.0% | |
| ! | GGCACGGTCTAGTTCATGTC+TGG | - | chr3_4:68646061-68646080 | Msa0517150:CDS | 55.0% |
| CTTCGGCCGCAACAAGGTCT+AGG | + | chr3_4:68641785-68641804 | None:intergenic | 60.0% | |
| CTGACTCTTCGGCCGCAACA+AGG | + | chr3_4:68641791-68641810 | None:intergenic | 60.0% | |
| GTTTGCGAGTTTGGAGGGGG+AGG | - | chr3_4:68642839-68642858 | Msa0517150:CDS | 60.0% | |
| GGGGAGGGGCTTGGGAAAAA+AGG | - | chr3_4:68642864-68642883 | Msa0517150:CDS | 60.0% | |
| !! | TTGAGAGGGGAAGGCGTTGG+GGG | - | chr3_4:68642915-68642934 | Msa0517150:CDS | 60.0% |
| !! | AGGGGAAGGCTTTGGAGGGT+TGG | + | chr3_4:68643173-68643192 | None:intergenic | 60.0% |
| TGAGTGAGGGGAGTGAGGGT+AGG | + | chr3_4:68644020-68644039 | None:intergenic | 60.0% | |
| ACCCTCACTCCCCTCACTCA+AGG | - | chr3_4:68644020-68644039 | Msa0517150:CDS | 60.0% | |
| GTGGCTGTGTGGAACTTCCG+TGG | - | chr3_4:68645094-68645113 | Msa0517150:intron | 60.0% | |
| GAGCACAGTTGCCGAAGCCT+TGG | - | chr3_4:68645981-68646000 | Msa0517150:CDS | 60.0% | |
| GACGCGAAGAAGACCGGTCG+CGG | - | chr3_4:68641815-68641834 | Msa0517150:three_prime_UTR | 65.0% | |
| CGAGTTTGGAGGGGGAGGGA+GGG | - | chr3_4:68642844-68642863 | Msa0517150:CDS | 65.0% | |
| GAGTTTGGAGGGGGAGGGAG+GGG | - | chr3_4:68642845-68642864 | Msa0517150:CDS | 65.0% | |
| !! | GGGGAGGGGAAGGCTTTGGA+GGG | + | chr3_4:68643177-68643196 | None:intergenic | 65.0% |
| ! | AGGGGAGGGGAAGGCTTTGG+AGG | + | chr3_4:68643178-68643197 | None:intergenic | 65.0% |
| TGGAGGGGAGGGGAAGGCTT+TGG | + | chr3_4:68643181-68643200 | None:intergenic | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | chr3_4:68643187-68643206 | None:intergenic | 65.0% | |
| GCGAAGAAGACCGGTCGCGG+TGG | - | chr3_4:68641818-68641837 | Msa0517150:three_prime_UTR | 70.0% | |
| GACCGGTCGCGGTGGTCGAA+CGG | - | chr3_4:68641826-68641845 | Msa0517150:three_prime_UTR | 70.0% | |
| CACCGTTCGACCACCGCGAC+CGG | + | chr3_4:68641831-68641850 | None:intergenic | 70.0% | |
| CGCGGTGGTCGAACGGTGGA+TGG | - | chr3_4:68641833-68641852 | Msa0517150:exon | 70.0% | |
| GCGAGTTTGGAGGGGGAGGG+AGG | - | chr3_4:68642843-68642862 | Msa0517150:CDS | 70.0% | |
| TTTGGAGGGGGAGGGAGGGG+AGG | - | chr3_4:68642848-68642867 | Msa0517150:CDS | 70.0% | |
| TTGGAGGGGGAGGGAGGGGA+GGG | - | chr3_4:68642849-68642868 | Msa0517150:CDS | 70.0% | |
| CGGTCGCGGTGGTCGAACGG+TGG | - | chr3_4:68641829-68641848 | Msa0517150:three_prime_UTR | 75.0% | |
| TGGAGGGGGAGGGAGGGGAG+GGG | - | chr3_4:68642850-68642869 | Msa0517150:CDS | 75.0% | |
| GGGAGGGAGGGGAGGGGCTT+GGG | - | chr3_4:68642856-68642875 | Msa0517150:CDS | 75.0% | |
| ! | GGGGAGGGAGGGGAGGGGCT+TGG | - | chr3_4:68642855-68642874 | Msa0517150:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68641520 | 68646423 | 68641520 | ID=Msa0517150;Name=Msa0517150 |
| chr3_4 | mRNA | 68641520 | 68646423 | 68641520 | ID=Msa0517150-mRNA-1;Parent=Msa0517150;Name=Msa0517150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=229|1|1|1|1|1|8|331|483 |
| chr3_4 | exon | 68641520 | 68642116 | 68641520 | ID=Msa0517150-mRNA-1:exon:18192;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68642687 | 68642957 | 68642687 | ID=Msa0517150-mRNA-1:exon:18191;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68643035 | 68643227 | 68643035 | ID=Msa0517150-mRNA-1:exon:18190;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68643423 | 68643503 | 68643423 | ID=Msa0517150-mRNA-1:exon:18189;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68643609 | 68643734 | 68643609 | ID=Msa0517150-mRNA-1:exon:18188;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68643957 | 68644107 | 68643957 | ID=Msa0517150-mRNA-1:exon:18187;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68644193 | 68644340 | 68644193 | ID=Msa0517150-mRNA-1:exon:18186;Parent=Msa0517150-mRNA-1 |
| chr3_4 | exon | 68645979 | 68646423 | 68645979 | ID=Msa0517150-mRNA-1:exon:18185;Parent=Msa0517150-mRNA-1 |
| chr3_4 | five_prime_UTR | 68646195 | 68646423 | 68646195 | ID=Msa0517150-mRNA-1:five_prime_utr;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68645979 | 68646194 | 68645979 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68644193 | 68644340 | 68644193 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68643957 | 68644107 | 68643957 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68643609 | 68643734 | 68643609 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68643423 | 68643503 | 68643423 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68643035 | 68643227 | 68643035 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68642687 | 68642957 | 68642687 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | CDS | 68641851 | 68642116 | 68641851 | ID=Msa0517150-mRNA-1:cds;Parent=Msa0517150-mRNA-1 |
| chr3_4 | three_prime_UTR | 68641520 | 68641850 | 68641520 | ID=Msa0517150-mRNA-1:three_prime_utr;Parent=Msa0517150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
