AlfalfaGEDB | Msa0426430

M. sativa cultivar zhongmu-4 / Msa0426430

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426430	XP_003602452.1	99.587	484	1	1	1	483	1	484	0.0	994

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426430	G7J9R1	99.587	484	1	1	1	483	1	484	0.0	994

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028340	Msa0426430	0.807864	4.104978e-50	-8.615850e-47
Msa0030390	Msa0426430	0.828077	1.098756e-54	-8.615850e-47
Msa0089980	Msa0426430	0.843058	1.769645e-58	-8.615850e-47
Msa0090010	Msa0426430	0.847776	9.337149e-60	-8.615850e-47
Msa0124200	Msa0426430	0.814773	1.298838e-51	-8.615850e-47
Msa0168570	Msa0426430	0.807288	5.438704e-50	-8.615850e-47
Msa0173750	Msa0426430	0.829403	5.249993e-55	-8.615850e-47
Msa0173840	Msa0426430	0.810081	1.375929e-50	-8.615850e-47
Msa0189710	Msa0426430	0.842324	2.772924e-58	-8.615850e-47
Msa0225480	Msa0426430	0.817894	2.602466e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426430	MtrunA17_Chr3g0128451	99.587	484	1	1	1	483	1	484	0.0	994
Msa0426430	MtrunA17_Chr5g0428701	88.608	474	50	4	12	483	17	488	0.0	863
Msa0426430	MtrunA17_Chr7g0245501	74.944	443	80	5	44	483	74	488	0.0	667
Msa0426430	MtrunA17_Chr4g0057181	60.586	307	92	7	163	463	24	307	1.53e-112	335
Msa0426430	MtrunA17_Chr4g0057191	58.000	250	97	3	27	275	12	254	1.72e-88	271
Msa0426430	MtrunA17_Chr4g0057201	59.701	201	54	6	289	483	5	184	7.77e-69	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426430	AT3G54190.1	83.090	479	67	4	5	483	3	467	0.0	809
Msa0426430	AT2G38630.1	80.585	479	78	4	5	483	4	467	0.0	783
Msa0426430	AT2G38630.2	83.673	392	59	2	5	396	4	390	0.0	672
Msa0426430	AT2G38630.3	78.834	326	61	4	5	330	4	321	8.30e-180	507

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Find 113 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCAAAGCCAGCATC+TGG	0.421789	3_2:+76806889	None:intergenic
AAAATCAACAACATGATCCC+AGG	0.618639	3_2:+76806400	None:intergenic
AAAATCCTTTCAATAGAAGA+CGG	0.594057	3_2:-76806349	Msa0426430:CDS
AAAGAGATGAATTAGGAAGA+GGG	0.536541	3_2:+76804727	None:intergenic
AAAGCCAATAAGAAAACACA+AGG	0.657103	3_2:+76805000	None:intergenic
AAGAAGTTACAAGCTCTCCA+CGG	0.664948	3_2:+76806006	None:intergenic
AATGGCAATACCACAGACGA+AGG	0.699297	3_2:+76807484	None:intergenic
ACCACAGACGAAGGACCTTT+TGG	0.282699	3_2:+76807493	None:intergenic
ACGTCCAGGAGATTAAGATC+AGG	0.585658	3_2:-76806618	Msa0426430:intron
ACTAAAAGCACGATCACGCT+TGG	0.514589	3_2:+76809217	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGAGTTCAGAAAATTTGAAA+CGG	-	chr3_2:76804733-76804752	Msa0426430:three_prime_UTR	30.0%
CATCTGAAAAACGAGAATTA+GGG	+	chr3_2:76804891-76804910	None:intergenic	30.0%
TAAACATTTGTAAGGCCATT+CGG	+	chr3_2:76805526-76805545	None:intergenic	30.0%
CACTGACATAAACATTTGTA+AGG	+	chr3_2:76805534-76805553	None:intergenic	30.0%
CTTACAAATGTTTATGTCAG+TGG	-	chr3_2:76805532-76805551	Msa0426430:intron	30.0%
TCAATGATTGTATTGGAAGA+GGG	-	chr3_2:76806178-76806197	Msa0426430:intron	30.0%
GTTGGAAATATAGGAGAAAA+TGG	+	chr3_2:76806351-76806370	None:intergenic	30.0%
TTATGATATGGTCATTGAGA+GGG	-	chr3_2:76806430-76806449	Msa0426430:intron	30.0%
TCATTGCAAATCATTGATGT+CGG	-	chr3_2:76806672-76806691	Msa0426430:CDS	30.0%
TATCAAAACAGGAGAAACAA+AGG	+	chr3_2:76806703-76806722	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	76804716	76809619	76804716	ID=Msa0426430;Name=Msa0426430
chr3_2	mRNA	76804716	76809619	76804716	ID=Msa0426430-mRNA-1;Parent=Msa0426430;Name=Msa0426430-mRNA-1;_AED=0.28;_eAED=0.28;_QI=229\|1\|1\|1\|1\|1\|8\|331\|483
chr3_2	exon	76804716	76805312	76804716	ID=Msa0426430-mRNA-1:exon:19976;Parent=Msa0426430-mRNA-1
chr3_2	exon	76805883	76806153	76805883	ID=Msa0426430-mRNA-1:exon:19975;Parent=Msa0426430-mRNA-1
chr3_2	exon	76806231	76806423	76806231	ID=Msa0426430-mRNA-1:exon:19974;Parent=Msa0426430-mRNA-1
chr3_2	exon	76806619	76806699	76806619	ID=Msa0426430-mRNA-1:exon:19973;Parent=Msa0426430-mRNA-1
chr3_2	exon	76806805	76806930	76806805	ID=Msa0426430-mRNA-1:exon:19972;Parent=Msa0426430-mRNA-1
chr3_2	exon	76807153	76807303	76807153	ID=Msa0426430-mRNA-1:exon:19971;Parent=Msa0426430-mRNA-1
chr3_2	exon	76807389	76807536	76807389	ID=Msa0426430-mRNA-1:exon:19970;Parent=Msa0426430-mRNA-1
chr3_2	exon	76809175	76809619	76809175	ID=Msa0426430-mRNA-1:exon:19969;Parent=Msa0426430-mRNA-1
chr3_2	five_prime_UTR	76809391	76809619	76809391	ID=Msa0426430-mRNA-1:five_prime_utr;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76809175	76809390	76809175	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76807389	76807536	76807389	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76807153	76807303	76807153	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76806805	76806930	76806805	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76806619	76806699	76806619	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76806231	76806423	76806231	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76805883	76806153	76805883	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	CDS	76805047	76805312	76805047	ID=Msa0426430-mRNA-1:cds;Parent=Msa0426430-mRNA-1
chr3_2	three_prime_UTR	76804716	76805046	76804716	ID=Msa0426430-mRNA-1:three_prime_utr;Parent=Msa0426430-mRNA-1

Gene Sequence

>Msa0426430

ATGGAAGGTACCGGAAGAAGAATCACGGTCAGTCCTAGACCTTGTTGCGGCCGAAGAGTCAGAGTCGACGCGAAGAAGACCGGTCGCGGTGGTCGAACGGTGGATGGATTTGTTAACAGCGTTAAGAAGCTTCAGAGACGCGAAATTAGCTCCAAGCGTGATCGTGCTTTTAGTATGACCGATGCGCAAGAACGATTCCGCAATATTCGTTTGCAGGAGGAATATGATACGCATGACCCAAAAGGTCCTTCGTCTGTGGTATTGCCATTTCTGAGAAAAAGATCAAAGATTATTGAGATTGTGGCAGCACAAGACATTGTTTTCGCTCTCGCACAATCTGGTGTTTGTGCAGCATTCAGCCGAGAAAGCAATCAAAGAATATGCTTTTTGAATGTCAGTCCCGATGAAGTTATAAGGAGTCTATTTTATAACAAAAATAATGACTCGCTTATCACAGTTTCTGTCTATGCATCAGACAGTTACAGTTCCCTGAAATGCAGAAGTACAAGGATTGAATACATCAGACGGGGTAAACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTAAAGTGGCCAGGTTTCGTAGAGTTTGATGATGTAAATGGGAAGGTACTCACATACTCTGCTCAAGATAGCATATACAAGGTATTTGACCTGAAAAACTATACCATGTTGTACTCCATTTCTGATAAAAACGTCCAGGAGATTAAGATCAGTCCTGGGATCATGTTGTTGATTTTTGCTAAAGCAAGTAGCCATGTCCCACTTAAAATCCTTTCAATAGAAGACGGTACTGTTTTGAAATCGTTCAACCATCTTCTTTATCGGAATAAGAAGGTGGATTTTATCGAACAGTTCAACGAAAAGCTCCTTGTCAAGCAAGAAAATGAAAACCTTCAAATTCTTGATGTGCGTACTTTTGAGCTGACAGAAGTTAGCAGAAGTGAATTTATGACACCTTCTGCATTTATCTTTCTTTATGAGAACCAATTATTCCTGACATTTCGAAACCGTACTGTGGCTGTGTGGAACTTCCGTGGAGAGCTTGTAACTTCTTTTGAGGACCACCTCTTGTGGCATCCTGACTGCAATACAAACAACATATATATAACCAGTGACCAGGATCTTATCATATCCTACTGCAAAGCTGATTCTGACGATTCGTTAACTGAAGGAAATGCGGGTTCCATCAATGTCAGCAACATTTTATCTGGCAAGTGTCTTGCCAAAATAAGAGCAAGCAATAGTTCTCCAATGGACAAGTGCAGTTGCTGTGACAGTTCTTCAGGCGGAAGTTGTAATTCAAGAAAGCGAAAGCATGTCTCCAAAATGAGGAGCACAGTTGCCGAAGCCTTGGAAGATATTACCGCTCTCTTCTATGACGAAGATCGCAATGAAATCTATACGGGAAATAGGCACGGTCTAGTTCATGTCTGGTCTAACTGA

Protein sequence

>Msa0426430

MEGTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDAQERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKCLAKIRASNSSPMDKCSCCDSSSGGSCNSRKRKHVSKMRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN*