AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473050 MtrunA17_Chr3g0128451 99.587 484 1 1 1 483 1 484 0.0 994
Msa0473050 MtrunA17_Chr5g0428701 88.608 474 50 4 12 483 17 488 0.0 863
Msa0473050 MtrunA17_Chr7g0245501 74.944 443 80 5 44 483 74 488 0.0 667
Msa0473050 MtrunA17_Chr4g0057181 60.586 307 92 7 163 463 24 307 1.53e-112 335
Msa0473050 MtrunA17_Chr4g0057191 58.000 250 97 3 27 275 12 254 1.72e-88 271
Msa0473050 MtrunA17_Chr4g0057201 59.701 201 54 6 289 483 5 184 7.77e-69 218
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473050 AT3G54190.1 83.090 479 67 4 5 483 3 467 0.0 809
Msa0473050 AT2G38630.1 80.585 479 78 4 5 483 4 467 0.0 783
Msa0473050 AT2G38630.2 83.673 392 59 2 5 396 4 390 0.0 672
Msa0473050 AT2G38630.3 78.834 326 61 4 5 330 4 321 8.30e-180 507

Find 113 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTGTACTTCTGCATTTC+AGG 0.137058 3_3:-75529252 None:intergenic
ACTATTGCTTGCTCTTATTT+TGG 0.142620 3_3:-75531164 None:intergenic
GTAATCTATCGTTACATTAA+TGG 0.182197 3_3:+75531618 Msa0473050:three_prime_UTR
GGCAACTGTGCTCCTCATTT+TGG 0.199495 3_3:-75531263 None:intergenic
CGTTCAACCATCTTCTTTAT+CGG 0.228283 3_3:+75530097 Msa0473050:CDS
GTAGAGTTTGATGATGTAAA+TGG 0.233273 3_3:+75529574 Msa0473050:CDS
GCATTGTTTACAACATATTT+TGG 0.236339 3_3:-75531656 None:intergenic
TTCGAAATGTCAGGAATAAT+TGG 0.249410 3_3:-75530355 None:intergenic
ATGAAATCTATACGGGAAAT+AGG 0.280316 3_3:+75531332 Msa0473050:CDS
ACCACAGACGAAGGACCTTT+TGG 0.282699 3_3:-75528916 None:intergenic
ATTCCGCAATATTCGTTTGC+AGG 0.333249 3_3:+75527235 Msa0473050:CDS
AGATCGCAATGAAATCTATA+CGG 0.334449 3_3:+75531324 Msa0473050:CDS
TGATCTATTGTATGAACATT+CGG 0.349190 3_3:+75531456 Msa0473050:three_prime_UTR
CTGTGAGGTGGTGAAGAATA+TGG 0.356251 3_3:+75527022 Msa0473050:exon
TAAAATGTTGCTGACATTGA+TGG 0.401179 3_3:-75531125 None:intergenic
ACTGACCGTGATTCTTCTTC+CGG 0.401954 3_3:-75527051 None:intergenic
GATCTATTGTATGAACATTC+GGG 0.415066 3_3:+75531457 Msa0473050:three_prime_UTR
TCAGTCCCGATGAAGTTATA+AGG 0.416657 3_3:+75529158 Msa0473050:CDS
CGCGGTGGTCGAACGGTGGA+TGG 0.421145 3_3:+75527125 Msa0473050:CDS
AAAAGAGCAAAGCCAGCATC+TGG 0.421789 3_3:-75529520 None:intergenic
GTGAAAGTTTGTTCGTTAGT+TGG 0.426449 3_3:+75531541 Msa0473050:three_prime_UTR
CCTTGTACTTCTGCATTTCA+GGG 0.428447 3_3:-75529251 None:intergenic
CGAGTTCAGAAAATTTGAAA+CGG 0.432070 3_3:+75526829 Msa0473050:five_prime_UTR
TAGAGTTTGATGATGTAAAT+GGG 0.441258 3_3:+75529575 Msa0473050:CDS
TGAATGATACAAACACTTAG+TGG 0.450276 3_3:-75531490 None:intergenic
GAGTTCAGAAAATTTGAAAC+GGG 0.456315 3_3:+75526830 Msa0473050:five_prime_UTR
GGTAATATCTTCCAAGGCTT+CGG 0.457415 3_3:-75531284 None:intergenic
TAAAGAGATGAATTAGGAAG+AGG 0.466260 3_3:-75531683 None:intergenic
ATCTTTATGAAGTGCTATGC+TGG 0.468525 3_3:+75531570 Msa0473050:three_prime_UTR
TCTTATTCCGATAAAGAAGA+TGG 0.472412 3_3:-75530104 None:intergenic
AGACTCCTTATAACTTCATC+GGG 0.473998 3_3:-75529163 None:intergenic
TACTTACATCAAGAATTTGA+AGG 0.474134 3_3:-75530185 None:intergenic
TGACGAATGACGAATTCAAT+TGG 0.476191 3_3:-75526860 None:intergenic
GAGCACAGTTGCCGAAGCCT+TGG 0.477858 3_3:+75531273 Msa0473050:CDS
AGTTGCTGTGACAGTTCTTC+AGG 0.483179 3_3:+75531205 Msa0473050:CDS
CAGCAACTGCACTTGTCCAT+TGG 0.487604 3_3:-75531190 None:intergenic
ATCAAAGATTATTGAGATTG+TGG 0.488197 3_3:+75528960 Msa0473050:CDS
GGCACGGTCTAGTTCATGTC+TGG 0.488541 3_3:+75531353 Msa0473050:CDS
CACCGTTCGACCACCGCGAC+CGG 0.490444 3_3:-75527120 None:intergenic
TCACATACTCTGCTCAAGAT+AGG 0.490784 3_3:+75529605 Msa0473050:CDS
GTTACCTGATCTTAATCTCC+TGG 0.492932 3_3:-75529795 None:intergenic
GATTCGTTAACTGAAGGAAA+TGG 0.502533 3_3:+75530527 Msa0473050:CDS
CCCTGAAATGCAGAAGTACA+AGG 0.504167 3_3:+75529251 Msa0473050:CDS
CTTCGGCCGCAACAAGGTCT+AGG 0.508662 3_3:-75527074 None:intergenic
ATGTTGTTTGTATTGCAGTC+AGG 0.511543 3_3:-75530449 None:intergenic
ACTAAAAGCACGATCACGCT+TGG 0.514589 3_3:-75527192 None:intergenic
GACGCGAAGAAGACCGGTCG+CGG 0.514863 3_3:+75527107 Msa0473050:CDS
TCGCGTCGACTCTGACTCTT+CGG 0.529810 3_3:-75527091 None:intergenic
TAGACTCCTTATAACTTCAT+CGG 0.530231 3_3:-75529164 None:intergenic
GACCGGTCGCGGTGGTCGAA+CGG 0.530668 3_3:+75527118 Msa0473050:CDS
AGGAACGAGAGAACGAAAAG+AGG 0.533439 3_3:-75526909 None:intergenic
CAGTACCGTCTTCTATTGAA+AGG 0.534240 3_3:-75530065 None:intergenic
AAAGAGATGAATTAGGAAGA+GGG 0.536541 3_3:-75531682 None:intergenic
TTGAATCTGAGTCTCTAAAG+TGG 0.537211 3_3:+75529542 Msa0473050:CDS
TATGATAAGATCCTGGTCAC+TGG 0.542139 3_3:-75530480 None:intergenic
TCTTCTTTATCGGAATAAGA+AGG 0.542427 3_3:+75530107 Msa0473050:CDS
GCGGAATCGTTCTTGCGCAT+CGG 0.542913 3_3:-75527219 None:intergenic
TCTGAGTCTCTAAAGTGGCC+AGG 0.543538 3_3:+75529547 Msa0473050:CDS
AGAGTCGACGCGAAGAAGAC+CGG 0.545154 3_3:+75527101 Msa0473050:CDS
AGATGAATTAGGAAGAGGGT+TGG 0.545223 3_3:-75531678 None:intergenic
ATTACAACAGAAGCAACATC+TGG 0.545348 3_3:-75531600 None:intergenic
GTTACATTAATGGAGCAGCT+TGG 0.555441 3_3:+75531628 Msa0473050:three_prime_UTR
CAGTACGGTTTCGAAATGTC+AGG 0.555794 3_3:-75530364 None:intergenic
TATGATACGCATGACCCAAA+AGG 0.557194 3_3:+75528901 Msa0473050:CDS
GTGAAGAATATGGAAGGTAC+CGG 0.559590 3_3:+75527032 Msa0473050:exon
TCATCAAACTCTACGAAACC+TGG 0.562829 3_3:-75529565 None:intergenic
GATCGCAATGAAATCTATAC+GGG 0.565753 3_3:+75531325 Msa0473050:CDS
AGCAAGCAATAGTTCTCCAA+TGG 0.570142 3_3:+75531174 Msa0473050:CDS
TTTGTCTTACAGCATATACA+AGG 0.570671 3_3:+75529720 Msa0473050:intron
AGACGGGGTAAACCAGATGC+TGG 0.576116 3_3:+75529508 Msa0473050:CDS
ACGTCCAGGAGATTAAGATC+AGG 0.585658 3_3:+75529791 Msa0473050:CDS
CTGACTCTTCGGCCGCAACA+AGG 0.586343 3_3:-75527080 None:intergenic
GTTGTTCAGATACATCAGAC+GGG 0.587956 3_3:+75529492 Msa0473050:intron
AGTAGGATATGATAAGATCC+TGG 0.588379 3_3:-75530487 None:intergenic
TGTTGTTCAGATACATCAGA+CGG 0.594045 3_3:+75529491 Msa0473050:intron
AAAATCCTTTCAATAGAAGA+CGG 0.594057 3_3:+75530060 Msa0473050:CDS
AGTTCCACACAGCCACAGTA+CGG 0.595254 3_3:-75530379 None:intergenic
TCTGACGATTCGTTAACTGA+AGG 0.595644 3_3:+75530521 Msa0473050:CDS
TTCACATGGCGTACATGACA+AGG 0.597500 3_3:-75531523 None:intergenic
GAAAGCATGTCTCCAAAATG+AGG 0.597812 3_3:+75531251 Msa0473050:CDS
TCTTTATCGGAATAAGAAGG+TGG 0.601059 3_3:+75530110 Msa0473050:CDS
GTGGCTGTGTGGAACTTCCG+TGG 0.603234 3_3:+75530386 Msa0473050:CDS
GAATTATTGTTACTGTGAGG+TGG 0.607227 3_3:+75527010 Msa0473050:five_prime_UTR
CCCAAAAGGTCCTTCGTCTG+TGG 0.607401 3_3:+75528915 Msa0473050:CDS
TGCTGTGACAGTTCTTCAGG+CGG 0.607506 3_3:+75531208 Msa0473050:CDS
CATATATATAACCAGTGACC+AGG 0.608399 3_3:+75530469 Msa0473050:CDS
GAGAGCGGTAATATCTTCCA+AGG 0.611956 3_3:-75531290 None:intergenic
CGGTCGCGGTGGTCGAACGG+TGG 0.613275 3_3:+75527121 Msa0473050:CDS
ATCTATACGGGAAATAGGCA+CGG 0.614529 3_3:+75531337 Msa0473050:CDS
GTTTGATGATGTAAATGGGA+AGG 0.617058 3_3:+75529579 Msa0473050:CDS
TAAAGAAAGATAAATGCAGA+AGG 0.617128 3_3:-75530326 None:intergenic
AAAATCAACAACATGATCCC+AGG 0.618639 3_3:-75530009 None:intergenic
ATCAGAAATGGAGTACAACA+TGG 0.623758 3_3:-75529764 None:intergenic
ATTGTATGAACATTCGGGAG+CGG 0.625277 3_3:+75531462 Msa0473050:three_prime_UTR
TAACCTGCAAACGAATATTG+CGG 0.625458 3_3:-75527238 None:intergenic
AGTCAGGATGCCACAAGAGG+TGG 0.633776 3_3:-75530433 None:intergenic
GTTTGTGCAGCATTCAGCCG+AGG 0.639705 3_3:+75529021 Msa0473050:CDS
TGCAGTCAGGATGCCACAAG+AGG 0.640084 3_3:-75530436 None:intergenic
GCGAAGAAGACCGGTCGCGG+TGG 0.646902 3_3:+75527110 Msa0473050:CDS
AAAGCCAATAAGAAAACACA+AGG 0.657103 3_3:-75531409 None:intergenic
CTAACGAACAAACTTTCACA+TGG 0.657391 3_3:-75531537 None:intergenic
AAGAAGTTACAAGCTCTCCA+CGG 0.664948 3_3:-75530403 None:intergenic
GTCAGTCCTAGACCTTGTTG+CGG 0.664976 3_3:+75527068 Msa0473050:CDS
GTCAGAATCAGCTTTGCAGT+AGG 0.668522 3_3:-75530504 None:intergenic
GACATTTCGAAACCGTACTG+TGG 0.671777 3_3:+75530367 Msa0473050:CDS
GGTGAATTATTGTTACTGTG+AGG 0.672568 3_3:+75527007 Msa0473050:five_prime_UTR
AGGTACCGGAAGAAGAATCA+CGG 0.678839 3_3:+75527046 Msa0473050:CDS
GAGGTGGTGAAGAATATGGA+AGG 0.692900 3_3:+75527026 Msa0473050:exon
AATGGCAATACCACAGACGA+AGG 0.699297 3_3:-75528925 None:intergenic
GAAACCGTACTGTGGCTGTG+TGG 0.713236 3_3:+75530375 Msa0473050:CDS
TGAGTTTCATGAACGAACGA+AGG 0.721655 3_3:-75526929 None:intergenic
ATCTTCGTCATAGAAGAGAG+CGG 0.733350 3_3:-75531305 None:intergenic
TTGTTCAGATACATCAGACG+GGG 0.739159 3_3:+75529493 Msa0473050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTTCTTTTTAAATTA+AGG + chr3_3:75527973-75527992 Msa0473050:intron 10.0%
!!! TCATTTTTAAAAACATATTA+TGG - chr3_3:75528002-75528021 None:intergenic 10.0%
!!! ATTTTATTTAAAAAATAGTC+AGG + chr3_3:75528712-75528731 Msa0473050:intron 10.0%
!! TTAAAAATGAATTACTCTTA+AGG + chr3_3:75528012-75528031 Msa0473050:intron 15.0%
!!! ATTCTTTTAAAGTTATGATA+TGG + chr3_3:75528514-75528533 Msa0473050:intron 15.0%
!!! AGTTTGGAATAAATATTTAA+AGG - chr3_3:75530884-75530903 None:intergenic 15.0%
!! AAATTAATTGTAATCCAATC+AGG - chr3_3:75527441-75527460 None:intergenic 20.0%
!! CTTATAATAAGCCTTTATAT+AGG - chr3_3:75527494-75527513 None:intergenic 20.0%
!!! CATAACTTTAAAAGAATTGA+AGG - chr3_3:75528511-75528530 None:intergenic 20.0%
!!! TACTTTTTTGTTTGTTTTTG+TGG + chr3_3:75528588-75528607 Msa0473050:intron 20.0%
!! ATATTGCAAACAAAATGAAA+AGG - chr3_3:75529073-75529092 None:intergenic 20.0%
!! AAGATATGCAAATATGTATT+TGG + chr3_3:75530701-75530720 Msa0473050:intron 20.0%
!!! TATGTATATTTTTTGCTGTA+AGG + chr3_3:75531044-75531063 Msa0473050:intron 20.0%
!! GAAAAATAAAGAGATGAATT+AGG - chr3_3:75531692-75531711 None:intergenic 20.0%
!! TTTCTTTCTTATACTCGTTT+TGG + chr3_3:75527351-75527370 Msa0473050:intron 25.0%
! TAAACCCTTATCCTATATAA+AGG + chr3_3:75527480-75527499 Msa0473050:intron 25.0%
! TAAGCCTTTATATAGGATAA+GGG - chr3_3:75527487-75527506 None:intergenic 25.0%
! ATAAGCCTTTATATAGGATA+AGG - chr3_3:75527488-75527507 None:intergenic 25.0%
! TTAAATAAGTCAATCCAAAG+AGG + chr3_3:75527657-75527676 Msa0473050:intron 25.0%
! AAGAAAATAGTGGTAAGTAT+GGG - chr3_3:75527683-75527702 None:intergenic 25.0%
! TAAGAAAATAGTGGTAAGTA+TGG - chr3_3:75527684-75527703 None:intergenic 25.0%
! TAGCTATGTTAAGAAAATAG+TGG - chr3_3:75527693-75527712 None:intergenic 25.0%
! ATCCTTTGATTATTGATGAA+TGG + chr3_3:75527716-75527735 Msa0473050:intron 25.0%
! TTCCATTCATCAATAATCAA+AGG - chr3_3:75527721-75527740 None:intergenic 25.0%
! TTGATTATTGATGAATGGAA+TGG + chr3_3:75527721-75527740 Msa0473050:intron 25.0%
!!! AATGCTTTTTGTATAAAGCA+AGG + chr3_3:75527834-75527853 Msa0473050:intron 25.0%
!!! ATGCTTTTTGTATAAAGCAA+GGG + chr3_3:75527835-75527854 Msa0473050:intron 25.0%
! AACAAACAAAAAAGTAGTAC+AGG - chr3_3:75528584-75528603 None:intergenic 25.0%
!!! TTTTTTGTTTGTTTTTGTGG+TGG + chr3_3:75528591-75528610 Msa0473050:intron 25.0%
! ATAAATAAATCCATCAGACA+GGG - chr3_3:75528873-75528892 None:intergenic 25.0%
! TATAAATAAATCCATCAGAC+AGG - chr3_3:75528874-75528893 None:intergenic 25.0%
!!! TGTCTGATGGATTTATTTAT+AGG + chr3_3:75528873-75528892 Msa0473050:intron 25.0%
!! TTTGATCTTTTTCTCAGAAA+TGG - chr3_3:75528946-75528965 None:intergenic 25.0%
! ATCAAAGATTATTGAGATTG+TGG + chr3_3:75528960-75528979 Msa0473050:CDS 25.0%
!! ATTGTGCATTTTGAATGATT+TGG - chr3_3:75529395-75529414 None:intergenic 25.0%
! ATGCACAATAACTAAAAGAA+AGG + chr3_3:75529406-75529425 Msa0473050:intron 25.0%
! AAAACACAAATACTAAAACC+TGG - chr3_3:75529456-75529475 None:intergenic 25.0%
!!! TAGAGTTTGATGATGTAAAT+GGG + chr3_3:75529575-75529594 Msa0473050:CDS 25.0%
! TATATTATGCAATTATACCC+TGG - chr3_3:75529660-75529679 None:intergenic 25.0%
! TATATGCTGTAAGACAAAAA+AGG - chr3_3:75529718-75529737 None:intergenic 25.0%
! ATACTCGAAGAAAGTAAAAA+AGG - chr3_3:75529944-75529963 None:intergenic 25.0%
!!! CTATTGAAAGGATTTTAAGT+GGG - chr3_3:75530056-75530075 None:intergenic 25.0%
!! TCTATTGAAAGGATTTTAAG+TGG - chr3_3:75530057-75530076 None:intergenic 25.0%
! AAAATCCTTTCAATAGAAGA+CGG + chr3_3:75530060-75530079 Msa0473050:CDS 25.0%
! TACTTACATCAAGAATTTGA+AGG - chr3_3:75530188-75530207 None:intergenic 25.0%
! TATTTATAGTGCAAGATAGA+AGG - chr3_3:75530215-75530234 None:intergenic 25.0%
!! CTCACTTACGTATAAATTTT+AGG + chr3_3:75530256-75530275 Msa0473050:intron 25.0%
! TAAAGAAAGATAAATGCAGA+AGG - chr3_3:75530329-75530348 None:intergenic 25.0%
! TGACAGAAAAGGAATAAATT+AGG - chr3_3:75530560-75530579 None:intergenic 25.0%
! TTATTAGAAAGTGACAGAAA+AGG - chr3_3:75530571-75530590 None:intergenic 25.0%
!!! ATTTTTGAAACTTGTAGCTT+AGG + chr3_3:75530621-75530640 Msa0473050:intron 25.0%
!!! CTGAAAATTTAGGTTCTTTT+TGG + chr3_3:75530653-75530672 Msa0473050:intron 25.0%
! TTGATCTGCTAAACATAATA+TGG + chr3_3:75530967-75530986 Msa0473050:intron 25.0%
! TGATCTATTGTATGAACATT+CGG + chr3_3:75531456-75531475 Msa0473050:three_prime_UTR 25.0%
! GTAATCTATCGTTACATTAA+TGG + chr3_3:75531618-75531637 Msa0473050:three_prime_UTR 25.0%
!! GCATTGTTTACAACATATTT+TGG - chr3_3:75531659-75531678 None:intergenic 25.0%
! CGTTTCAAATTTTCTGAACT+CGG - chr3_3:75526831-75526850 None:intergenic 30.0%
CGAGTTCAGAAAATTTGAAA+CGG + chr3_3:75526829-75526848 Msa0473050:five_prime_UTR 30.0%
! GAGTTCAGAAAATTTGAAAC+GGG + chr3_3:75526830-75526849 Msa0473050:five_prime_UTR 30.0%
!! AATTAGGGTTTTGTACGAAA+AGG - chr3_3:75526972-75526991 None:intergenic 30.0%
CATCTGAAAAACGAGAATTA+GGG - chr3_3:75526987-75527006 None:intergenic 30.0%
!! CTAATTCTCGTTTTTCAGAT+GGG + chr3_3:75526986-75527005 Msa0473050:five_prime_UTR 30.0%
TAAACATTTGTAAGGCCATT+CGG - chr3_3:75527622-75527641 None:intergenic 30.0%
CACTGACATAAACATTTGTA+AGG - chr3_3:75527630-75527649 None:intergenic 30.0%
CTTACAAATGTTTATGTCAG+TGG + chr3_3:75527628-75527647 Msa0473050:intron 30.0%
!! TGCTTTTTGTATAAAGCAAG+GGG + chr3_3:75527836-75527855 Msa0473050:intron 30.0%
! AAATGTGATTTTCGTAGTGT+TGG + chr3_3:75527905-75527924 Msa0473050:intron 30.0%
! AATGTGATTTTCGTAGTGTT+GGG + chr3_3:75527906-75527925 Msa0473050:intron 30.0%
TCAATGATTGTATTGGAAGA+GGG + chr3_3:75528274-75528293 Msa0473050:intron 30.0%
GTTGGAAATATAGGAGAAAA+TGG - chr3_3:75528447-75528466 None:intergenic 30.0%
! AAGAATTGAAGGCTTTGTAT+GGG - chr3_3:75528500-75528519 None:intergenic 30.0%
! AAAGAATTGAAGGCTTTGTA+TGG - chr3_3:75528501-75528520 None:intergenic 30.0%
TTATGATATGGTCATTGAGA+GGG + chr3_3:75528526-75528545 Msa0473050:intron 30.0%
!!! TGAAGTGTGTTTTTTGTTTG+TGG + chr3_3:75528642-75528661 Msa0473050:intron 30.0%
TCATTGCAAATCATTGATGT+CGG + chr3_3:75528768-75528787 Msa0473050:intron 30.0%
TATCAAAACAGGAGAAACAA+AGG - chr3_3:75528799-75528818 None:intergenic 30.0%
!! CTGATGGATTTATTTATAGG+AGG + chr3_3:75528876-75528895 Msa0473050:intron 30.0%
TAGACTCCTTATAACTTCAT+CGG - chr3_3:75529167-75529186 None:intergenic 30.0%
GGGTAGGAATTATAAAACAA+TGG - chr3_3:75529296-75529315 None:intergenic 30.0%
AAAACAATATCCTTGAGTGA+GGG - chr3_3:75529325-75529344 None:intergenic 30.0%
TAAAACAATATCCTTGAGTG+AGG - chr3_3:75529326-75529345 None:intergenic 30.0%
!!! TGTATTTTTTCCTTGAGTGA+GGG - chr3_3:75529367-75529386 None:intergenic 30.0%
ATATCAACATTTGCATTTCC+AGG + chr3_3:75529435-75529454 Msa0473050:intron 30.0%
!! GTAGAGTTTGATGATGTAAA+TGG + chr3_3:75529574-75529593 Msa0473050:CDS 30.0%
TTTGTCTTACAGCATATACA+AGG + chr3_3:75529720-75529739 Msa0473050:intron 30.0%
! ACAACATGGTATAGTTTTTC+AGG - chr3_3:75529753-75529772 None:intergenic 30.0%
ATCATCAAACAAGAGAAAAG+TGG - chr3_3:75529975-75529994 None:intergenic 30.0%
TCTTATTCCGATAAAGAAGA+TGG - chr3_3:75530107-75530126 None:intergenic 30.0%
TCTTCTTTATCGGAATAAGA+AGG + chr3_3:75530107-75530126 Msa0473050:CDS 30.0%
! TTTCATTTTCTTGCTTGACA+AGG - chr3_3:75530164-75530183 None:intergenic 30.0%
TTATACGTAAGTGAGATATC+TGG - chr3_3:75530251-75530270 None:intergenic 30.0%
TTCGAAATGTCAGGAATAAT+TGG - chr3_3:75530358-75530377 None:intergenic 30.0%
! AGAACCTAAATTTTCAGATC+TGG - chr3_3:75530650-75530669 None:intergenic 30.0%
TCAACTAACGAAAAACACAT+GGG + chr3_3:75530727-75530746 Msa0473050:intron 30.0%
AGAAGATTCATAATCACAGT+AGG + chr3_3:75530839-75530858 Msa0473050:intron 30.0%
! TTTATTCCAAACTGACTCTT+TGG + chr3_3:75530891-75530910 Msa0473050:intron 30.0%
TAAAATGTTGCTGACATTGA+TGG - chr3_3:75531128-75531147 None:intergenic 30.0%
! AATGTCAGCAACATTTTATC+TGG + chr3_3:75531130-75531149 Msa0473050:CDS 30.0%
!! ACTATTGCTTGCTCTTATTT+TGG - chr3_3:75531167-75531186 None:intergenic 30.0%
AGATCGCAATGAAATCTATA+CGG + chr3_3:75531324-75531343 Msa0473050:CDS 30.0%
ATGAAATCTATACGGGAAAT+AGG + chr3_3:75531332-75531351 Msa0473050:CDS 30.0%
AAAGCCAATAAGAAAACACA+AGG - chr3_3:75531412-75531431 None:intergenic 30.0%
!!! TTCTTATTGGCTTTTCTTCA+TGG + chr3_3:75531418-75531437 Msa0473050:three_prime_UTR 30.0%
!!! TCTTATTGGCTTTTCTTCAT+GGG + chr3_3:75531419-75531438 Msa0473050:three_prime_UTR 30.0%
GATCTATTGTATGAACATTC+GGG + chr3_3:75531457-75531476 Msa0473050:three_prime_UTR 30.0%
TGAATGATACAAACACTTAG+TGG - chr3_3:75531493-75531512 None:intergenic 30.0%
AAAGAGATGAATTAGGAAGA+GGG - chr3_3:75531685-75531704 None:intergenic 30.0%
TAAAGAGATGAATTAGGAAG+AGG - chr3_3:75531686-75531705 None:intergenic 30.0%
TGACGAATGACGAATTCAAT+TGG - chr3_3:75526863-75526882 None:intergenic 35.0%
CCATCTGAAAAACGAGAATT+AGG - chr3_3:75526988-75527007 None:intergenic 35.0%
!! CCTAATTCTCGTTTTTCAGA+TGG + chr3_3:75526985-75527004 Msa0473050:five_prime_UTR 35.0%
GGTGAATTATTGTTACTGTG+AGG + chr3_3:75527007-75527026 Msa0473050:five_prime_UTR 35.0%
GAATTATTGTTACTGTGAGG+TGG + chr3_3:75527010-75527029 Msa0473050:five_prime_UTR 35.0%
TAACCTGCAAACGAATATTG+CGG - chr3_3:75527241-75527260 None:intergenic 35.0%
!! AGGTTGAGTTTGTTAGGTTA+TGG + chr3_3:75527307-75527326 Msa0473050:intron 35.0%
TATGAAGCTATATGCCTGAT+TGG + chr3_3:75527424-75527443 Msa0473050:intron 35.0%
!! GTTGTTTTCACAAGCTATCA+TGG + chr3_3:75527535-75527554 Msa0473050:intron 35.0%
! TTTTCATAAGTTCTCCCGAA+TGG + chr3_3:75527604-75527623 Msa0473050:intron 35.0%
AAACATTTGTAAGGCCATTC+GGG - chr3_3:75527621-75527640 None:intergenic 35.0%
TTTGATTCCCATTGTCACAT+TGG - chr3_3:75527869-75527888 None:intergenic 35.0%
ATGGGAATCAAAAAGTAGCA+TGG + chr3_3:75527877-75527896 Msa0473050:intron 35.0%
! ATGTGATTTTCGTAGTGTTG+GGG + chr3_3:75527907-75527926 Msa0473050:intron 35.0%
! TATGTTTGGATGGATGGTTT+TGG + chr3_3:75527930-75527949 Msa0473050:intron 35.0%
AACTCGCAAACAAATCCTAA+GGG - chr3_3:75528122-75528141 None:intergenic 35.0%
AAACTCGCAAACAAATCCTA+AGG - chr3_3:75528123-75528142 None:intergenic 35.0%
! TTAGGATTTGTTTGCGAGTT+TGG + chr3_3:75528122-75528141 Msa0473050:intron 35.0%
AAGAAACAGATGACATTGAG+AGG + chr3_3:75528192-75528211 Msa0473050:intron 35.0%
AGAAACAGATGACATTGAGA+GGG + chr3_3:75528193-75528212 Msa0473050:intron 35.0%
AATACAAAATCCTCCTCAGT+TGG + chr3_3:75528245-75528264 Msa0473050:intron 35.0%
ATACAAAATCCTCCTCAGTT+GGG + chr3_3:75528246-75528265 Msa0473050:intron 35.0%
CTCAATGATTGTATTGGAAG+AGG + chr3_3:75528273-75528292 Msa0473050:intron 35.0%
! ATTGTATTGGAAGAGGGTTT+TGG + chr3_3:75528280-75528299 Msa0473050:intron 35.0%
! TTGTATTGGAAGAGGGTTTT+GGG + chr3_3:75528281-75528300 Msa0473050:intron 35.0%
GTTATGATATGGTCATTGAG+AGG + chr3_3:75528525-75528544 Msa0473050:intron 35.0%
TATGATATGGTCATTGAGAG+GGG + chr3_3:75528527-75528546 Msa0473050:intron 35.0%
TCATGACTCAACAGTAATAC+AGG - chr3_3:75528625-75528644 None:intergenic 35.0%
AAATCCTGACTAAACACAGT+GGG - chr3_3:75528686-75528705 None:intergenic 35.0%
AAAATCCTGACTAAACACAG+TGG - chr3_3:75528687-75528706 None:intergenic 35.0%
CATGTCTTGCTTATCAAAAC+AGG - chr3_3:75528810-75528829 None:intergenic 35.0%
AGACTCCTTATAACTTCATC+GGG - chr3_3:75529166-75529185 None:intergenic 35.0%
AAACAATATCCTTGAGTGAG+GGG - chr3_3:75529324-75529343 None:intergenic 35.0%
!!! CTGTATTTTTTCCTTGAGTG+AGG - chr3_3:75529368-75529387 None:intergenic 35.0%
TGTTGTTCAGATACATCAGA+CGG + chr3_3:75529491-75529510 Msa0473050:intron 35.0%
! TTGAATCTGAGTCTCTAAAG+TGG + chr3_3:75529542-75529561 Msa0473050:CDS 35.0%
!! GTTTGATGATGTAAATGGGA+AGG + chr3_3:75529579-75529598 Msa0473050:CDS 35.0%
ATCAGAAATGGAGTACAACA+TGG - chr3_3:75529767-75529786 None:intergenic 35.0%
! CTGGACGTTTTTATCAGAAA+TGG - chr3_3:75529779-75529798 None:intergenic 35.0%
CATTTCTGATAAAAACGTCC+AGG + chr3_3:75529777-75529796 Msa0473050:CDS 35.0%
! TCAGGTAACTTTTCTTGATG+TGG + chr3_3:75529809-75529828 Msa0473050:intron 35.0%
AGAAAACTCTTTCGTAAACG+CGG + chr3_3:75529848-75529867 Msa0473050:intron 35.0%
TGATTTCTCGTTATTAGTCC+TGG + chr3_3:75529991-75530010 Msa0473050:intron 35.0%
GATTTCTCGTTATTAGTCCT+GGG + chr3_3:75529992-75530011 Msa0473050:intron 35.0%
AAAATCAACAACATGATCCC+AGG - chr3_3:75530012-75530031 None:intergenic 35.0%
!! AAAGGATTTTAAGTGGGACA+TGG - chr3_3:75530050-75530069 None:intergenic 35.0%
CGTTCAACCATCTTCTTTAT+CGG + chr3_3:75530097-75530116 Msa0473050:CDS 35.0%
TCTTTATCGGAATAAGAAGG+TGG + chr3_3:75530110-75530129 Msa0473050:CDS 35.0%
! AGAGCTTGTAACTTCTTTTG+AGG + chr3_3:75530409-75530428 Msa0473050:CDS 35.0%
! ATGTTGTTTGTATTGCAGTC+AGG - chr3_3:75530452-75530471 None:intergenic 35.0%
CATATATATAACCAGTGACC+AGG + chr3_3:75530469-75530488 Msa0473050:CDS 35.0%
AGTAGGATATGATAAGATCC+TGG - chr3_3:75530490-75530509 None:intergenic 35.0%
GATTCGTTAACTGAAGGAAA+TGG + chr3_3:75530527-75530546 Msa0473050:CDS 35.0%
ATACACATTGTGTGAGACAA+TGG + chr3_3:75530590-75530609 Msa0473050:intron 35.0%
TACACATTGTGTGAGACAAT+GGG + chr3_3:75530591-75530610 Msa0473050:intron 35.0%
GTCACCAGATCTGAAAATTT+AGG + chr3_3:75530643-75530662 Msa0473050:intron 35.0%
CTCAACTAACGAAAAACACA+TGG + chr3_3:75530726-75530745 Msa0473050:intron 35.0%
CAACTAACGAAAAACACATG+GGG + chr3_3:75530728-75530747 Msa0473050:intron 35.0%
AACTAACGAAAAACACATGG+GGG + chr3_3:75530729-75530748 Msa0473050:intron 35.0%
AAAAACACATGGGGGTTTAT+TGG + chr3_3:75530737-75530756 Msa0473050:intron 35.0%
! TTGGTGGTTATGAAGAAAGA+AGG + chr3_3:75530756-75530775 Msa0473050:intron 35.0%
TGCAGAAACTCATTTCAACT+TGG + chr3_3:75530803-75530822 Msa0473050:intron 35.0%
ACCAAAAGAATACCAACTCT+TGG + chr3_3:75530924-75530943 Msa0473050:intron 35.0%
TTAGCAGATCAAGTCAAAAC+CGG - chr3_3:75530959-75530978 None:intergenic 35.0%
AGGAGCAACTATGTTCATAA+AGG + chr3_3:75531064-75531083 Msa0473050:intron 35.0%
GATCGCAATGAAATCTATAC+GGG + chr3_3:75531325-75531344 Msa0473050:CDS 35.0%
! GTTGCCTTGTGTTTTCTTAT+TGG + chr3_3:75531405-75531424 Msa0473050:three_prime_UTR 35.0%
CTAACGAACAAACTTTCACA+TGG - chr3_3:75531540-75531559 None:intergenic 35.0%
! GTGAAAGTTTGTTCGTTAGT+TGG + chr3_3:75531541-75531560 Msa0473050:three_prime_UTR 35.0%
! ATCTTTATGAAGTGCTATGC+TGG + chr3_3:75531570-75531589 Msa0473050:three_prime_UTR 35.0%
ATTACAACAGAAGCAACATC+TGG - chr3_3:75531603-75531622 None:intergenic 35.0%
TGAGTTTCATGAACGAACGA+AGG - chr3_3:75526932-75526951 None:intergenic 40.0%
! GTGAAGAATATGGAAGGTAC+CGG + chr3_3:75527032-75527051 Msa0473050:exon 40.0%
ATTCCGCAATATTCGTTTGC+AGG + chr3_3:75527235-75527254 Msa0473050:CDS 40.0%
TTTCGTGTTTCCATTTCACG+AGG + chr3_3:75527287-75527306 Msa0473050:intron 40.0%
ACAAACTCAACCTCGTGAAA+TGG - chr3_3:75527300-75527319 None:intergenic 40.0%
! TTCACGAGGTTGAGTTTGTT+AGG + chr3_3:75527301-75527320 Msa0473050:intron 40.0%
AAGCTATCATGGAGAGCTTA+TGG + chr3_3:75527546-75527565 Msa0473050:intron 40.0%
GCTGCATATGCTTATACTAG+TGG - chr3_3:75527792-75527811 None:intergenic 40.0%
TAGTATAAGCATATGCAGCC+TGG + chr3_3:75527793-75527812 Msa0473050:intron 40.0%
TGTGTCACCAATGTGACAAT+GGG + chr3_3:75527859-75527878 Msa0473050:intron 40.0%
!!! TTTGGATGGATGGTTTTGGA+GGG + chr3_3:75527934-75527953 Msa0473050:intron 40.0%
! TTTGGGAGTTGTGTTTTGCA+AGG - chr3_3:75528095-75528114 None:intergenic 40.0%
! CAAATCCTAAGGGTACGTTT+GGG - chr3_3:75528112-75528131 None:intergenic 40.0%
! ACAAATCCTAAGGGTACGTT+TGG - chr3_3:75528113-75528132 None:intergenic 40.0%
! GATTTGTTTGCGAGTTTGGA+GGG + chr3_3:75528126-75528145 Msa0473050:intron 40.0%
ATTTGTTTGCGAGTTTGGAG+GGG + chr3_3:75528127-75528146 Msa0473050:intron 40.0%
GAAACAGATGACATTGAGAG+GGG + chr3_3:75528194-75528213 Msa0473050:intron 40.0%
TACAAAATCCTCCTCAGTTG+GGG + chr3_3:75528247-75528266 Msa0473050:intron 40.0%
GGGGAACTCAATGATTGTAT+TGG + chr3_3:75528267-75528286 Msa0473050:intron 40.0%
! TGTATTGGAAGAGGGTTTTG+GGG + chr3_3:75528282-75528301 Msa0473050:intron 40.0%
! CTTTGGAGGGTTGGAAATAT+AGG - chr3_3:75528456-75528475 None:intergenic 40.0%
GGGTTGAGAGAATACAGATT+GGG + chr3_3:75528547-75528566 Msa0473050:intron 40.0%
GGTTGAGAGAATACAGATTG+GGG + chr3_3:75528548-75528567 Msa0473050:intron 40.0%
GTTGAGAGAATACAGATTGG+GGG + chr3_3:75528549-75528568 Msa0473050:intron 40.0%
ATTTCCCACTGTGTTTAGTC+AGG + chr3_3:75528679-75528698 Msa0473050:intron 40.0%
TATGATACGCATGACCCAAA+AGG + chr3_3:75528901-75528920 Msa0473050:CDS 40.0%
!! ACCAGTTACTAGTTCTACCT+CGG - chr3_3:75529041-75529060 None:intergenic 40.0%
TCAGTCCCGATGAAGTTATA+AGG + chr3_3:75529158-75529177 Msa0473050:CDS 40.0%
CCTTGTACTTCTGCATTTCA+GGG - chr3_3:75529254-75529273 None:intergenic 40.0%
TCCTTGTACTTCTGCATTTC+AGG - chr3_3:75529255-75529274 None:intergenic 40.0%
GTTGTTCAGATACATCAGAC+GGG + chr3_3:75529492-75529511 Msa0473050:intron 40.0%
TTGTTCAGATACATCAGACG+GGG + chr3_3:75529493-75529512 Msa0473050:intron 40.0%
TCATCAAACTCTACGAAACC+TGG - chr3_3:75529568-75529587 None:intergenic 40.0%
TCACATACTCTGCTCAAGAT+AGG + chr3_3:75529605-75529624 Msa0473050:CDS 40.0%
! TCCTGAAACTTCTTTTGCCA+GGG + chr3_3:75529640-75529659 Msa0473050:intron 40.0%
GTTACCTGATCTTAATCTCC+TGG - chr3_3:75529798-75529817 None:intergenic 40.0%
TCGTAAACGCGGTTTATAGT+TGG + chr3_3:75529859-75529878 Msa0473050:intron 40.0%
CAGTACCGTCTTCTATTGAA+AGG - chr3_3:75530068-75530087 None:intergenic 40.0%
AAGAAGTTACAAGCTCTCCA+CGG - chr3_3:75530406-75530425 None:intergenic 40.0%
TATGATAAGATCCTGGTCAC+TGG - chr3_3:75530483-75530502 None:intergenic 40.0%
TCTGACGATTCGTTAACTGA+AGG + chr3_3:75530521-75530540 Msa0473050:CDS 40.0%
ATGATGCCAAAGAGTCAGTT+TGG - chr3_3:75530900-75530919 None:intergenic 40.0%
!!! GCCAAGAGTTGGTATTCTTT+TGG - chr3_3:75530928-75530947 None:intergenic 40.0%
!!! CAACTCTTGGCTCTTTTTTC+CGG + chr3_3:75530937-75530956 Msa0473050:intron 40.0%
!! TTCATAAAGGCAGTACTGAC+AGG + chr3_3:75531077-75531096 Msa0473050:intron 40.0%
! GCTCTGCTAATTTTATGCAG+CGG + chr3_3:75531099-75531118 Msa0473050:intron 40.0%
! CTCTGCTAATTTTATGCAGC+GGG + chr3_3:75531100-75531119 Msa0473050:intron 40.0%
AGCAAGCAATAGTTCTCCAA+TGG + chr3_3:75531174-75531193 Msa0473050:CDS 40.0%
! GAAAGCATGTCTCCAAAATG+AGG + chr3_3:75531251-75531270 Msa0473050:CDS 40.0%
GGTAATATCTTCCAAGGCTT+CGG - chr3_3:75531287-75531306 None:intergenic 40.0%
ATCTTCGTCATAGAAGAGAG+CGG - chr3_3:75531308-75531327 None:intergenic 40.0%
ATCTATACGGGAAATAGGCA+CGG + chr3_3:75531337-75531356 Msa0473050:CDS 40.0%
ATTGTATGAACATTCGGGAG+CGG + chr3_3:75531462-75531481 Msa0473050:three_prime_UTR 40.0%
GTTACATTAATGGAGCAGCT+TGG + chr3_3:75531628-75531647 Msa0473050:three_prime_UTR 40.0%
AGATGAATTAGGAAGAGGGT+TGG - chr3_3:75531681-75531700 None:intergenic 40.0%
AGGAACGAGAGAACGAAAAG+AGG - chr3_3:75526912-75526931 None:intergenic 45.0%
CTGTGAGGTGGTGAAGAATA+TGG + chr3_3:75527022-75527041 Msa0473050:exon 45.0%
GAGGTGGTGAAGAATATGGA+AGG + chr3_3:75527026-75527045 Msa0473050:exon 45.0%
!! AGGTACCGGAAGAAGAATCA+CGG + chr3_3:75527046-75527065 Msa0473050:CDS 45.0%
ACTGACCGTGATTCTTCTTC+CGG - chr3_3:75527054-75527073 None:intergenic 45.0%
! ACTAAAAGCACGATCACGCT+TGG - chr3_3:75527195-75527214 None:intergenic 45.0%
GAATACAAGCATCAGACACC+AGG - chr3_3:75527814-75527833 None:intergenic 45.0%
GTGTGTCACCAATGTGACAA+TGG + chr3_3:75527858-75527877 Msa0473050:intron 45.0%
! TCGTAGTGTTGGGGTATGTT+TGG + chr3_3:75527916-75527935 Msa0473050:intron 45.0%
! AGTGTTGGGGTATGTTTGGA+TGG + chr3_3:75527920-75527939 Msa0473050:intron 45.0%
TTGGGGTATGTTTGGATGGA+TGG + chr3_3:75527924-75527943 Msa0473050:intron 45.0%
!!! GTTTGGATGGATGGTTTTGG+AGG + chr3_3:75527933-75527952 Msa0473050:intron 45.0%
!!! TTGGATGGATGGTTTTGGAG+GGG + chr3_3:75527935-75527954 Msa0473050:intron 45.0%
! GGATTTGTTTGCGAGTTTGG+AGG + chr3_3:75528125-75528144 Msa0473050:intron 45.0%
TTTGTTTGCGAGTTTGGAGG+GGG + chr3_3:75528128-75528147 Msa0473050:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG + chr3_3:75528169-75528188 Msa0473050:intron 45.0%
ACAAAATCCTCCTCAGTTGG+GGG + chr3_3:75528248-75528267 Msa0473050:intron 45.0%
!! GTATTGGAAGAGGGTTTTGG+GGG + chr3_3:75528283-75528302 Msa0473050:intron 45.0%
!!! TATTGGAAGAGGGTTTTGGG+GGG + chr3_3:75528284-75528303 Msa0473050:intron 45.0%
CTTTGTATGGGAGTTTGGAG+GGG - chr3_3:75528488-75528507 None:intergenic 45.0%
GCTTTGTATGGGAGTTTGGA+GGG - chr3_3:75528489-75528508 None:intergenic 45.0%
! GAAGGCTTTGTATGGGAGTT+TGG - chr3_3:75528493-75528512 None:intergenic 45.0%
GGGGTTGAGAGAATACAGAT+TGG + chr3_3:75528546-75528565 Msa0473050:intron 45.0%
AATGGCAATACCACAGACGA+AGG - chr3_3:75528928-75528947 None:intergenic 45.0%
! CCCTGAAATGCAGAAGTACA+AGG + chr3_3:75529251-75529270 Msa0473050:CDS 45.0%
TCCTTGAGTGAGGGTAGTAA+GGG - chr3_3:75529358-75529377 None:intergenic 45.0%
TTCCTTGAGTGAGGGTAGTA+AGG - chr3_3:75529359-75529378 None:intergenic 45.0%
AAAAGAGCAAAGCCAGCATC+TGG - chr3_3:75529523-75529542 None:intergenic 45.0%
! GTCCTGAAACTTCTTTTGCC+AGG + chr3_3:75529639-75529658 Msa0473050:intron 45.0%
ACCCTGGCAAAAGAAGTTTC+AGG - chr3_3:75529644-75529663 None:intergenic 45.0%
ACGTCCAGGAGATTAAGATC+AGG + chr3_3:75529791-75529810 Msa0473050:CDS 45.0%
! ACGCGGTTTATAGTTGGTCT+TGG + chr3_3:75529865-75529884 Msa0473050:intron 45.0%
CAGTACGGTTTCGAAATGTC+AGG - chr3_3:75530367-75530386 None:intergenic 45.0%
GACATTTCGAAACCGTACTG+TGG + chr3_3:75530367-75530386 Msa0473050:CDS 45.0%
GTCAGAATCAGCTTTGCAGT+AGG - chr3_3:75530507-75530526 None:intergenic 45.0%
AACACATGGGGGTTTATTGG+TGG + chr3_3:75530740-75530759 Msa0473050:intron 45.0%
CGGAAAAAAGAGCCAAGAGT+TGG - chr3_3:75530939-75530958 None:intergenic 45.0%
AGTTGCTGTGACAGTTCTTC+AGG + chr3_3:75531205-75531224 Msa0473050:CDS 45.0%
GAGAGCGGTAATATCTTCCA+AGG - chr3_3:75531293-75531312 None:intergenic 45.0%
TTCACATGGCGTACATGACA+AGG - chr3_3:75531526-75531545 None:intergenic 45.0%
!!! ATTTTTTTAAAATATCAAAT+AGG + chr3_3:75528050-75528069 Msa0473050:intron 5.0%
GTCAGTCCTAGACCTTGTTG+CGG + chr3_3:75527068-75527087 Msa0473050:CDS 50.0%
GTGGTAAGTATGGGCCTCTT+TGG - chr3_3:75527674-75527693 None:intergenic 50.0%
CAACTCCCAAACGTACCCTT+AGG + chr3_3:75528104-75528123 Msa0473050:intron 50.0%
AGGGGCTTGGGAAAAAAGGA+AGG + chr3_3:75528160-75528179 Msa0473050:intron 50.0%
CAGATGACATTGAGAGGGGA+AGG + chr3_3:75528198-75528217 Msa0473050:intron 50.0%
TCATTGAGTTCCCCCAACTG+AGG - chr3_3:75528261-75528280 None:intergenic 50.0%
!!! AAGAGGGTTTTGGGGGGTTT+TGG + chr3_3:75528290-75528309 Msa0473050:intron 50.0%
! GGCTTTGTATGGGAGTTTGG+AGG - chr3_3:75528490-75528509 None:intergenic 50.0%
AGACAGGGCACAACATGTGA+GGG - chr3_3:75528858-75528877 None:intergenic 50.0%
ACATGTTGTGCCCTGTCTGA+TGG + chr3_3:75528860-75528879 Msa0473050:intron 50.0%
! CCACAGACGAAGGACCTTTT+GGG - chr3_3:75528918-75528937 None:intergenic 50.0%
! ACCACAGACGAAGGACCTTT+TGG - chr3_3:75528919-75528938 None:intergenic 50.0%
! GTTTTCGCTCTCGCACAATC+TGG + chr3_3:75528997-75529016 Msa0473050:CDS 50.0%
GCCGAGGTAGAACTAGTAAC+TGG + chr3_3:75529037-75529056 Msa0473050:intron 50.0%
TGAGTGAGGGTAGTAAGGGA+AGG - chr3_3:75529354-75529373 None:intergenic 50.0%
TCCCTTACTACCCTCACTCA+AGG + chr3_3:75529354-75529373 Msa0473050:intron 50.0%
!! TCTGAGTCTCTAAAGTGGCC+AGG + chr3_3:75529547-75529566 Msa0473050:CDS 50.0%
AGTTCCACACAGCCACAGTA+CGG - chr3_3:75530382-75530401 None:intergenic 50.0%
!! CTTTTGAGGACCACCTCTTG+TGG + chr3_3:75530423-75530442 Msa0473050:CDS 50.0%
CAGCAACTGCACTTGTCCAT+TGG - chr3_3:75531193-75531212 None:intergenic 50.0%
TGCTGTGACAGTTCTTCAGG+CGG + chr3_3:75531208-75531227 Msa0473050:CDS 50.0%
! GGCAACTGTGCTCCTCATTT+TGG - chr3_3:75531266-75531285 None:intergenic 50.0%
!! TCGCGTCGACTCTGACTCTT+CGG - chr3_3:75527094-75527113 None:intergenic 55.0%
AGAGTCGACGCGAAGAAGAC+CGG + chr3_3:75527101-75527120 Msa0473050:CDS 55.0%
GCGGAATCGTTCTTGCGCAT+CGG - chr3_3:75527222-75527241 None:intergenic 55.0%
!!! GATGGATGGTTTTGGAGGGG+AGG + chr3_3:75527938-75527957 Msa0473050:intron 55.0%
!!! TGGTTTTGGAGGGGAGGAGA+AGG + chr3_3:75527944-75527963 Msa0473050:intron 55.0%
TTTGCGAGTTTGGAGGGGGA+GGG + chr3_3:75528132-75528151 Msa0473050:intron 55.0%
! ACATTGAGAGGGGAAGGCGT+TGG + chr3_3:75528204-75528223 Msa0473050:intron 55.0%
!! CATTGAGAGGGGAAGGCGTT+GGG + chr3_3:75528205-75528224 Msa0473050:intron 55.0%
!! ATTGAGAGGGGAAGGCGTTG+GGG + chr3_3:75528206-75528225 Msa0473050:intron 55.0%
TTGAGTTCCCCCAACTGAGG+AGG - chr3_3:75528258-75528277 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTTTGG+AGG + chr3_3:75528293-75528312 Msa0473050:intron 55.0%
!!! GGGTTTTGGGGGGTTTTGGA+GGG + chr3_3:75528294-75528313 Msa0473050:intron 55.0%
TATGGGAGTTTGGAGGGGAG+GGG - chr3_3:75528483-75528502 None:intergenic 55.0%
GTATGGGAGTTTGGAGGGGA+GGG - chr3_3:75528484-75528503 None:intergenic 55.0%
TGTATGGGAGTTTGGAGGGG+AGG - chr3_3:75528485-75528504 None:intergenic 55.0%
CAGACAGGGCACAACATGTG+AGG - chr3_3:75528859-75528878 None:intergenic 55.0%
CCCAAAAGGTCCTTCGTCTG+TGG + chr3_3:75528915-75528934 Msa0473050:CDS 55.0%
GTTTGTGCAGCATTCAGCCG+AGG + chr3_3:75529021-75529040 Msa0473050:CDS 55.0%
TCCTTGAGTGAGGGGAGTGA+GGG - chr3_3:75529316-75529335 None:intergenic 55.0%
ATCCTTGAGTGAGGGGAGTG+AGG - chr3_3:75529317-75529336 None:intergenic 55.0%
AGACGGGGTAAACCAGATGC+TGG + chr3_3:75529508-75529527 Msa0473050:CDS 55.0%
GAAACCGTACTGTGGCTGTG+TGG + chr3_3:75530375-75530394 Msa0473050:CDS 55.0%
AGTCAGGATGCCACAAGAGG+TGG - chr3_3:75530436-75530455 None:intergenic 55.0%
TGCAGTCAGGATGCCACAAG+AGG - chr3_3:75530439-75530458 None:intergenic 55.0%
! GGCACGGTCTAGTTCATGTC+TGG + chr3_3:75531353-75531372 Msa0473050:CDS 55.0%
CTTCGGCCGCAACAAGGTCT+AGG - chr3_3:75527077-75527096 None:intergenic 60.0%
CTGACTCTTCGGCCGCAACA+AGG - chr3_3:75527083-75527102 None:intergenic 60.0%
GTTTGCGAGTTTGGAGGGGG+AGG + chr3_3:75528131-75528150 Msa0473050:intron 60.0%
GGGGAGGGGCTTGGGAAAAA+AGG + chr3_3:75528156-75528175 Msa0473050:intron 60.0%
!! TTGAGAGGGGAAGGCGTTGG+GGG + chr3_3:75528207-75528226 Msa0473050:intron 60.0%
!! AGGGGAAGGCTTTGGAGGGT+TGG - chr3_3:75528465-75528484 None:intergenic 60.0%
TGAGTGAGGGGAGTGAGGGT+AGG - chr3_3:75529312-75529331 None:intergenic 60.0%
ACCCTCACTCCCCTCACTCA+AGG + chr3_3:75529312-75529331 Msa0473050:intron 60.0%
GTGGCTGTGTGGAACTTCCG+TGG + chr3_3:75530386-75530405 Msa0473050:CDS 60.0%
GAGCACAGTTGCCGAAGCCT+TGG + chr3_3:75531273-75531292 Msa0473050:CDS 60.0%
GACGCGAAGAAGACCGGTCG+CGG + chr3_3:75527107-75527126 Msa0473050:CDS 65.0%
CGAGTTTGGAGGGGGAGGGA+GGG + chr3_3:75528136-75528155 Msa0473050:intron 65.0%
GAGTTTGGAGGGGGAGGGAG+GGG + chr3_3:75528137-75528156 Msa0473050:intron 65.0%
!! GGGGAGGGGAAGGCTTTGGA+GGG - chr3_3:75528469-75528488 None:intergenic 65.0%
! AGGGGAGGGGAAGGCTTTGG+AGG - chr3_3:75528470-75528489 None:intergenic 65.0%
TGGAGGGGAGGGGAAGGCTT+TGG - chr3_3:75528473-75528492 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG - chr3_3:75528479-75528498 None:intergenic 65.0%
GCGAAGAAGACCGGTCGCGG+TGG + chr3_3:75527110-75527129 Msa0473050:CDS 70.0%
GACCGGTCGCGGTGGTCGAA+CGG + chr3_3:75527118-75527137 Msa0473050:CDS 70.0%
CACCGTTCGACCACCGCGAC+CGG - chr3_3:75527123-75527142 None:intergenic 70.0%
CGCGGTGGTCGAACGGTGGA+TGG + chr3_3:75527125-75527144 Msa0473050:CDS 70.0%
GCGAGTTTGGAGGGGGAGGG+AGG + chr3_3:75528135-75528154 Msa0473050:intron 70.0%
TTTGGAGGGGGAGGGAGGGG+AGG + chr3_3:75528140-75528159 Msa0473050:intron 70.0%
TTGGAGGGGGAGGGAGGGGA+GGG + chr3_3:75528141-75528160 Msa0473050:intron 70.0%
CGGTCGCGGTGGTCGAACGG+TGG + chr3_3:75527121-75527140 Msa0473050:CDS 75.0%
TGGAGGGGGAGGGAGGGGAG+GGG + chr3_3:75528142-75528161 Msa0473050:intron 75.0%
GGGAGGGAGGGGAGGGGCTT+GGG + chr3_3:75528148-75528167 Msa0473050:intron 75.0%
! GGGGAGGGAGGGGAGGGGCT+TGG + chr3_3:75528147-75528166 Msa0473050:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 75526812 75531715 75526812 ID=Msa0473050;Name=Msa0473050
chr3_3 mRNA 75526812 75531715 75526812 ID=Msa0473050-mRNA-1;Parent=Msa0473050;Name=Msa0473050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=229|1|1|1|1|1|8|331|483
chr3_3 exon 75526812 75527256 75526812 ID=Msa0473050-mRNA-1:exon:19592;Parent=Msa0473050-mRNA-1
chr3_3 exon 75528895 75529042 75528895 ID=Msa0473050-mRNA-1:exon:19593;Parent=Msa0473050-mRNA-1
chr3_3 exon 75529128 75529278 75529128 ID=Msa0473050-mRNA-1:exon:19594;Parent=Msa0473050-mRNA-1
chr3_3 exon 75529501 75529626 75529501 ID=Msa0473050-mRNA-1:exon:19595;Parent=Msa0473050-mRNA-1
chr3_3 exon 75529732 75529812 75529732 ID=Msa0473050-mRNA-1:exon:19596;Parent=Msa0473050-mRNA-1
chr3_3 exon 75530008 75530200 75530008 ID=Msa0473050-mRNA-1:exon:19597;Parent=Msa0473050-mRNA-1
chr3_3 exon 75530278 75530548 75530278 ID=Msa0473050-mRNA-1:exon:19598;Parent=Msa0473050-mRNA-1
chr3_3 exon 75531119 75531715 75531119 ID=Msa0473050-mRNA-1:exon:19599;Parent=Msa0473050-mRNA-1
chr3_3 five_prime_UTR 75526812 75527040 75526812 ID=Msa0473050-mRNA-1:five_prime_utr;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75527041 75527256 75527041 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75528895 75529042 75528895 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75529128 75529278 75529128 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75529501 75529626 75529501 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75529732 75529812 75529732 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75530008 75530200 75530008 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75530278 75530548 75530278 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 CDS 75531119 75531384 75531119 ID=Msa0473050-mRNA-1:cds;Parent=Msa0473050-mRNA-1
chr3_3 three_prime_UTR 75531385 75531715 75531385 ID=Msa0473050-mRNA-1:three_prime_utr;Parent=Msa0473050-mRNA-1
Gene Sequence

>Msa0473050

ATGGAAGGTACCGGAAGAAGAATCACGGTCAGTCCTAGACCTTGTTGCGGCCGAAGAGTCAGAGTCGACGCGAAGAAGACCGGTCGCGGTGGTCGAACGGTGGATGGATTTGTTAACAGCGTTAAGAAGCTTCAGAGACGCGAAATTAGCTCCAAGCGTGATCGTGCTTTTAGTATGACCGATGCGCAAGAACGATTCCGCAATATTCGTTTGCAGGAGGAATATGATACGCATGACCCAAAAGGTCCTTCGTCTGTGGTATTGCCATTTCTGAGAAAAAGATCAAAGATTATTGAGATTGTGGCAGCACAAGACATTGTTTTCGCTCTCGCACAATCTGGTGTTTGTGCAGCATTCAGCCGAGAAAGCAATCAAAGAATATGCTTTTTGAATGTCAGTCCCGATGAAGTTATAAGGAGTCTATTTTATAACAAAAATAATGACTCGCTTATCACAGTTTCTGTCTATGCATCAGACAGTTACAGTTCCCTGAAATGCAGAAGTACAAGGATTGAATACATCAGACGGGGTAAACCAGATGCTGGCTTTGCTCTTTTTGAATCTGAGTCTCTAAAGTGGCCAGGTTTCGTAGAGTTTGATGATGTAAATGGGAAGGTACTCACATACTCTGCTCAAGATAGCATATACAAGGTATTTGACCTGAAAAACTATACCATGTTGTACTCCATTTCTGATAAAAACGTCCAGGAGATTAAGATCAGTCCTGGGATCATGTTGTTGATTTTTGCTAAAGCAAGTAGCCATGTCCCACTTAAAATCCTTTCAATAGAAGACGGTACTGTTTTGAAATCGTTCAACCATCTTCTTTATCGGAATAAGAAGGTGGATTTTATCGAACAGTTCAACGAAAAGCTCCTTGTCAAGCAAGAAAATGAAAACCTTCAAATTCTTGATGTGCGTACTTTTGAGCTGACAGAAGTTAGCAGAAGTGAATTTATGACACCTTCTGCATTTATCTTTCTTTATGAGAACCAATTATTCCTGACATTTCGAAACCGTACTGTGGCTGTGTGGAACTTCCGTGGAGAGCTTGTAACTTCTTTTGAGGACCACCTCTTGTGGCATCCTGACTGCAATACAAACAACATATATATAACCAGTGACCAGGATCTTATCATATCCTACTGCAAAGCTGATTCTGACGATTCGTTAACTGAAGGAAATGCGGGTTCCATCAATGTCAGCAACATTTTATCTGGCAAGTGTCTTGCCAAAATAAGAGCAAGCAATAGTTCTCCAATGGACAAGTGCAGTTGCTGTGACAGTTCTTCAGGCGGAAGTTGTAATTCAAGAAAGCGAAAGCATGTCTCCAAAATGAGGAGCACAGTTGCCGAAGCCTTGGAAGATATTACCGCTCTCTTCTATGACGAAGATCGCAATGAAATCTATACGGGAAATAGGCACGGTCTAGTTCATGTCTGGTCTAACTGA

Protein sequence

>Msa0473050

MEGTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDAQERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRESNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKCLAKIRASNSSPMDKCSCCDSSSGGSCNSRKRKHVSKMRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN*