Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517940 | AES72821.1 | 96.344 | 465 | 4 | 1 | 1 | 465 | 48 | 499 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517940 | sp|Q9FKT8|COX15_ARATH | 76.773 | 409 | 82 | 1 | 57 | 465 | 60 | 455 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517940 | G7JAZ9 | 96.344 | 465 | 4 | 1 | 1 | 465 | 48 | 499 | 0.0 | 908 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0517940 | Msa0621210 | 0.804299 | 2.308814e-49 | -8.615850e-47 |
| Msa0517940 | Msa1453760 | 0.839805 | 1.272206e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517940 | MtrunA17_Chr3g0129841 | 96.344 | 465 | 4 | 1 | 1 | 465 | 1 | 452 | 0.0 | 905 |
| Msa0517940 | MtrunA17_Chr5g0447211 | 86.765 | 476 | 35 | 7 | 1 | 465 | 1 | 459 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517940 | AT5G56090.1 | 76.773 | 409 | 82 | 1 | 57 | 465 | 60 | 455 | 0.0 | 632 |
Find 162 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAATGGCTGGTTGTTTA+AGG | 0.158189 | 3_4:-69653663 | Msa0517940:three_prime_UTR |
| CTATTTACTGCGGTCTCTTT+TGG | 0.194502 | 3_4:-69655016 | Msa0517940:CDS |
| ATAAGGCACTCACTGAAATT+AGG | 0.203303 | 3_4:+69654299 | None:intergenic |
| CGCGCCGCCGCCACCGCCAC+TGG | 0.220692 | 3_4:-69657340 | Msa0517940:five_prime_UTR |
| CTTTGGCATGGCATCTGTTC+AGG | 0.249061 | 3_4:-69654218 | Msa0517940:intron |
| AGTTGAGACTATTATTATTC+AGG | 0.264715 | 3_4:-69653886 | Msa0517940:three_prime_UTR |
| AAGAATTCAAGTTCATATAT+TGG | 0.279114 | 3_4:-69655379 | Msa0517940:CDS |
| GTCTCTGGTGCATTTGTTGC+AGG | 0.281738 | 3_4:-69654876 | Msa0517940:CDS |
| GATGGTTAAAAGTGGTTTAG+AGG | 0.285283 | 3_4:-69655198 | Msa0517940:intron |
| CGGTGGCGGCGGCGCGTGGC+AGG | 0.286601 | 3_4:+69657347 | None:intergenic |
| GTGGCGGCGGCGCGTGGCAG+GGG | 0.288953 | 3_4:+69657349 | None:intergenic |
| CTAAGAGTTTCTGCTTTGTT+TGG | 0.292561 | 3_4:-69655254 | Msa0517940:CDS |
| GTTTGGCCTGGGTGCCGGGC+AGG | 0.295557 | 3_4:-69655237 | Msa0517940:CDS |
| TCACTTTACCGCTTGTATTC+AGG | 0.298272 | 3_4:+69655791 | None:intergenic |
| CTCATATGTACCTGTTTCAT+TGG | 0.300963 | 3_4:-69654039 | Msa0517940:CDS |
| AAAGTACCTTAGGAATATTA+TGG | 0.303428 | 3_4:+69656867 | None:intergenic |
| GCGGCGGCGCGTGGCAGGGG+AGG | 0.308288 | 3_4:+69657352 | None:intergenic |
| GTTTCTAAGACGGTGTCTGC+TGG | 0.323987 | 3_4:-69656049 | Msa0517940:CDS |
| AGTTTCTGCTTTGTTTGGCC+TGG | 0.325487 | 3_4:-69655249 | Msa0517940:CDS |
| GCTTTGTTTGGCCTGGGTGC+CGG | 0.332317 | 3_4:-69655242 | Msa0517940:CDS |
| TCTGTGATCGGAGGCATCTT+TGG | 0.335894 | 3_4:-69654235 | Msa0517940:CDS |
| GGTGGCGGCGGCGCGTGGCA+GGG | 0.338845 | 3_4:+69657348 | None:intergenic |
| CACAGAAGGTGGTTGGAATA+TGG | 0.346396 | 3_4:-69655976 | Msa0517940:CDS |
| CTTTGTTTGGCCTGGGTGCC+GGG | 0.347622 | 3_4:-69655241 | Msa0517940:CDS |
| TTCATATATTGGATGGAGTA+TGG | 0.349375 | 3_4:-69655368 | Msa0517940:CDS |
| GGCGGCGCGTGGCAGGGGAG+GGG | 0.353046 | 3_4:+69657354 | None:intergenic |
| TAATTTCAGTGAGTGCCTTA+TGG | 0.353453 | 3_4:-69654297 | Msa0517940:CDS |
| AAAGCCAGTGGCGGTGGCGG+CGG | 0.368260 | 3_4:+69657336 | None:intergenic |
| CGGCGGCGCGTGGCAGGGGA+GGG | 0.371904 | 3_4:+69657353 | None:intergenic |
| CTTGAATGATTGTTGTTGTA+TGG | 0.372902 | 3_4:+69656937 | None:intergenic |
| CTGGTCTTTCAATGACTGAT+TGG | 0.376044 | 3_4:-69655886 | Msa0517940:CDS |
| GGTGCCGGGCAGGGTCTCAT+TGG | 0.377328 | 3_4:-69655227 | Msa0517940:CDS |
| TTTGGCCTGGGTGCCGGGCA+GGG | 0.387716 | 3_4:-69655236 | Msa0517940:CDS |
| AAATTCGGTCGGTGGACAAT+TGG | 0.388965 | 3_4:+69653838 | None:intergenic |
| CTGTCGAATATTATTGATGA+TGG | 0.390093 | 3_4:-69653624 | Msa0517940:three_prime_UTR |
| GTTTCTGCTTTGTTTGGCCT+GGG | 0.391846 | 3_4:-69655248 | Msa0517940:CDS |
| GGCTCTTCGGCTCTGCTGCA+TGG | 0.395595 | 3_4:-69655955 | Msa0517940:CDS |
| ATGGTTGTCAACAAGAAAAC+TGG | 0.401662 | 3_4:-69654278 | Msa0517940:CDS |
| TAAGGCACTCACTGAAATTA+GGG | 0.406985 | 3_4:+69654300 | None:intergenic |
| ACGAAAGAAATGGGTGGAAA+TGG | 0.411067 | 3_4:+69656901 | None:intergenic |
| AGGTGAGCTGCGAGACGATA+AGG | 0.414513 | 3_4:+69655053 | None:intergenic |
| TGCTGCATGGGTGTTTACTA+TGG | 0.415471 | 3_4:-69655942 | Msa0517940:CDS |
| GGCTGAGAATATTCAGTTGG+TGG | 0.416405 | 3_4:+69655086 | None:intergenic |
| GTGGCGGTGGCGGCGGCGCG+TGG | 0.426527 | 3_4:+69657343 | None:intergenic |
| TTTCTAAGACGGTGTCTGCT+GGG | 0.431255 | 3_4:-69656048 | Msa0517940:CDS |
| CCGGGCAGGGTCTCATTGGC+TGG | 0.436364 | 3_4:-69655223 | Msa0517940:CDS |
| TCATATGTACCTGTTTCATT+GGG | 0.436558 | 3_4:-69654038 | Msa0517940:CDS |
| ATCGGAAAGTACGAAAGAAA+TGG | 0.436920 | 3_4:+69656891 | None:intergenic |
| GTTTGGTTACAGGTCACCTT+GGG | 0.440175 | 3_4:-69654077 | Msa0517940:intron |
| TTTCAACCCCTCGTTATGTA+TGG | 0.447927 | 3_4:+69656024 | None:intergenic |
| AAGTACCTTAGGAATATTAT+GGG | 0.454815 | 3_4:+69656868 | None:intergenic |
| AGTGATTCAGCCGGTGGCTC+AGG | 0.456013 | 3_4:+69654972 | None:intergenic |
| AGTCATTGAAAGACCAGATC+TGG | 0.459275 | 3_4:+69655892 | None:intergenic |
| GGGTTGCAGTTGCAAGGATC+CGG | 0.461286 | 3_4:+69654320 | None:intergenic |
| GTGTTTACTATGGTCATACT+TGG | 0.461574 | 3_4:-69655932 | Msa0517940:CDS |
| AAGACCAGATCTGGTGAGTC+TGG | 0.463516 | 3_4:+69655901 | None:intergenic |
| TTCCGAAGATGGGTGATACA+TGG | 0.467914 | 3_4:-69654712 | Msa0517940:CDS |
| TGTTTACTATGGTCATACTT+GGG | 0.468604 | 3_4:-69655931 | Msa0517940:CDS |
| TCATATCAATTGCATCATCA+TGG | 0.469035 | 3_4:+69653782 | None:intergenic |
| AGGATGAGAGAAAGGAATTG+TGG | 0.470689 | 3_4:+69656964 | None:intergenic |
| GTGGTTGGAATATGGCTCTT+CGG | 0.471056 | 3_4:-69655968 | Msa0517940:CDS |
| CCAGCCAATGAGACCCTGCC+CGG | 0.472748 | 3_4:+69655223 | None:intergenic |
| TGGTGGAGAGATAAAATGTT+TGG | 0.475471 | 3_4:-69657058 | Msa0517940:exon |
| GGGTCTCATTGGCTGGTGGA+TGG | 0.475646 | 3_4:-69655216 | Msa0517940:CDS |
| GGATGAGAGAAAGGAATTGT+GGG | 0.480774 | 3_4:+69656965 | None:intergenic |
| AATGACTGATTGGAAATTCA+CGG | 0.482925 | 3_4:-69655876 | Msa0517940:CDS |
| ATCCATGTATCACCCATCTT+CGG | 0.483371 | 3_4:+69654710 | None:intergenic |
| TTAACCAGACTCACCAGATC+TGG | 0.485033 | 3_4:-69655905 | Msa0517940:CDS |
| ACTTCTCAAATCGCTGCCTC+AGG | 0.487353 | 3_4:-69653934 | Msa0517940:CDS |
| CAAGGAAGAGGAGTCTAGAA+TGG | 0.487497 | 3_4:-69653677 | Msa0517940:three_prime_UTR |
| TGTGCAGTACCCAATGAAAC+AGG | 0.491136 | 3_4:+69654029 | None:intergenic |
| GCTCTTCGGCTCTGCTGCAT+GGG | 0.492096 | 3_4:-69655954 | Msa0517940:CDS |
| GTTTACTATGGTCATACTTG+GGG | 0.495384 | 3_4:-69655930 | Msa0517940:CDS |
| GGGTTGAAACTGCTCGTGAC+AGG | 0.495776 | 3_4:-69656010 | Msa0517940:CDS |
| ATGGAAGAAGGATGAGAGAA+AGG | 0.500541 | 3_4:+69656956 | None:intergenic |
| GTTGGTCTTACTGCTGTCTC+TGG | 0.501689 | 3_4:-69654891 | Msa0517940:CDS |
| CTGCAATCTCTTTGAGCTGA+GGG | 0.507214 | 3_4:+69657405 | None:intergenic |
| ATTCAAGTTCATATATTGGA+TGG | 0.507471 | 3_4:-69655375 | Msa0517940:CDS |
| TGTTGTTATGCCTGAGCCAC+CGG | 0.507525 | 3_4:-69654982 | Msa0517940:CDS |
| TGGAGTATGGACATCGTATG+TGG | 0.508780 | 3_4:-69655355 | Msa0517940:CDS |
| TTATGAAGAAAATATGAATA+CGG | 0.509606 | 3_4:+69655302 | None:intergenic |
| CCTGCAGTCCGGTCTGTGAT+CGG | 0.510812 | 3_4:-69654247 | Msa0517940:CDS |
| GGAGTATGGACATCGTATGT+GGG | 0.512226 | 3_4:-69655354 | Msa0517940:CDS |
| TCAAAGAAATTTCGAATCAG+AGG | 0.513360 | 3_4:+69654662 | None:intergenic |
| TTGGGTACTGCACATCAAGC+TGG | 0.514431 | 3_4:-69654020 | Msa0517940:CDS |
| GAAGAGGAGTCTAGAATGGC+TGG | 0.516054 | 3_4:-69653673 | Msa0517940:three_prime_UTR |
| TGTTTGATTCACAAGCTCAC+AGG | 0.516244 | 3_4:-69657004 | Msa0517940:CDS |
| TGCTTAATCACACGGTTCGA+AGG | 0.519149 | 3_4:-69653968 | Msa0517940:CDS |
| CCGATCCCATAATATTCCTA+AGG | 0.521182 | 3_4:-69656873 | Msa0517940:intron |
| CTGAGGGAGGGTTTAACCAA+AGG | 0.529892 | 3_4:+69657421 | None:intergenic |
| AGACGATAAGGGCTTACTCT+TGG | 0.530529 | 3_4:+69655065 | None:intergenic |
| TGTTTGGTTACAGGTCACCT+TGG | 0.532225 | 3_4:-69654078 | Msa0517940:intron |
| TCGGAAAGTACGAAAGAAAT+GGG | 0.534716 | 3_4:+69656892 | None:intergenic |
| TGAGACCCTGCCCGGCACCC+AGG | 0.535609 | 3_4:+69655231 | None:intergenic |
| AATCTCTTTGAGCTGAGGGA+GGG | 0.536051 | 3_4:+69657409 | None:intergenic |
| CACGGTTCGAAGGCCATCCT+CGG | 0.537075 | 3_4:-69653958 | Msa0517940:CDS |
| GGCAGGGTCTCATTGGCTGG+TGG | 0.537460 | 3_4:-69655220 | Msa0517940:CDS |
| AAGAAATGGGTGGAAATGGA+AGG | 0.537983 | 3_4:+69656905 | None:intergenic |
| TGAGAATACATCGACTGTAC+AGG | 0.539915 | 3_4:-69654642 | Msa0517940:intron |
| AAATTAGGGTTGCAGTTGCA+AGG | 0.542607 | 3_4:+69654314 | None:intergenic |
| AATCACTAACATGGGTCCGT+GGG | 0.544047 | 3_4:-69654956 | Msa0517940:CDS |
| GATTGTTGTTGTATGGAAGA+AGG | 0.544230 | 3_4:+69656944 | None:intergenic |
| CAATCTCTTTGAGCTGAGGG+AGG | 0.546599 | 3_4:+69657408 | None:intergenic |
| CCGATCACAGACCGGACTGC+AGG | 0.547715 | 3_4:+69654247 | None:intergenic |
| CTTGGCTGAGAATATTCAGT+TGG | 0.547748 | 3_4:+69655083 | None:intergenic |
| ATGACTGATTGGAAATTCAC+GGG | 0.548486 | 3_4:-69655875 | Msa0517940:CDS |
| CTCCTTTGTCTGATGAGGCG+TGG | 0.550365 | 3_4:-69655844 | Msa0517940:CDS |
| CCTTAGGAATATTATGGGAT+CGG | 0.554125 | 3_4:+69656873 | None:intergenic |
| GTGGCAGGGGAGGGGAGAAG+CGG | 0.554242 | 3_4:+69657362 | None:intergenic |
| GGTGAGCTGCGAGACGATAA+GGG | 0.554481 | 3_4:+69655054 | None:intergenic |
| CACCGGCTGAATCACTAACA+TGG | 0.555370 | 3_4:-69654965 | Msa0517940:CDS |
| GGTGGAGAGATAAAATGTTT+GGG | 0.557457 | 3_4:-69657057 | Msa0517940:exon |
| TTGCCTGTCAGCTTACTCGT+TGG | 0.557599 | 3_4:-69654909 | Msa0517940:CDS |
| AAACAGGTACATATGAGAGA+AGG | 0.559091 | 3_4:+69654045 | None:intergenic |
| TCTCATGCACAGAAGGTGGT+TGG | 0.559566 | 3_4:-69655983 | Msa0517940:CDS |
| GGGTCATCGTGTTTCTAAGA+CGG | 0.562157 | 3_4:-69656059 | Msa0517940:CDS |
| TGGACATACATCCTGCAGTC+CGG | 0.563232 | 3_4:-69654258 | Msa0517940:CDS |
| AGGAGGTTCTCATGCACAGA+AGG | 0.564528 | 3_4:-69655990 | Msa0517940:CDS |
| AACGAAGAGGATCTCAAGCT+CGG | 0.565422 | 3_4:+69657303 | None:intergenic |
| GTTTGATTCACAAGCTCACA+GGG | 0.567830 | 3_4:-69657003 | Msa0517940:CDS |
| GTTCCCTCCTTTGTCTGATG+AGG | 0.567933 | 3_4:-69655849 | Msa0517940:CDS |
| GAATCACTAACATGGGTCCG+TGG | 0.568732 | 3_4:-69654957 | Msa0517940:CDS |
| TTTACTATGGTCATACTTGG+GGG | 0.574839 | 3_4:-69655929 | Msa0517940:CDS |
| ATCGCTGCCTCAGGTTGTCA+AGG | 0.575597 | 3_4:-69653925 | Msa0517940:CDS |
| GTAAAACAAACATAAGTCCA+AGG | 0.594062 | 3_4:+69655324 | None:intergenic |
| TATGTTACTGCTTAATCACA+CGG | 0.599610 | 3_4:-69653976 | Msa0517940:CDS |
| TAGTTTGCCTTGACAACCTG+AGG | 0.605573 | 3_4:+69653918 | None:intergenic |
| GGCTGGTGGATGGTTAAAAG+TGG | 0.606546 | 3_4:-69655206 | Msa0517940:CDS |
| GCAGTCCGGTCTGTGATCGG+AGG | 0.609023 | 3_4:-69654244 | Msa0517940:CDS |
| CATGTTAGTGATTCAGCCGG+TGG | 0.609054 | 3_4:+69654966 | None:intergenic |
| AACAGGTACATATGAGAGAA+GGG | 0.611039 | 3_4:+69654046 | None:intergenic |
| GATTTGAGAAGTGCCGAGGA+TGG | 0.611196 | 3_4:+69653945 | None:intergenic |
| TTCTAAGACGGTGTCTGCTG+GGG | 0.611493 | 3_4:-69656047 | Msa0517940:CDS |
| AGAAATGGGTGGAAATGGAA+GGG | 0.612420 | 3_4:+69656906 | None:intergenic |
| GATCGGAGGCATCTTTGGCA+TGG | 0.616105 | 3_4:-69654230 | Msa0517940:CDS |
| AGATGCCTCCGATCACAGAC+CGG | 0.616679 | 3_4:+69654239 | None:intergenic |
| ACCCATGTTAGTGATTCAGC+CGG | 0.619631 | 3_4:+69654963 | None:intergenic |
| ACGCCTCATCAGACAAAGGA+GGG | 0.621078 | 3_4:+69655846 | None:intergenic |
| TCTTTACTTTAGCAGCCCCA+CGG | 0.622740 | 3_4:+69654940 | None:intergenic |
| GAGTATGGACATCGTATGTG+GGG | 0.623390 | 3_4:-69655353 | Msa0517940:CDS |
| TGCTGGGGCCATACATAACG+AGG | 0.625400 | 3_4:-69656032 | Msa0517940:CDS |
| AGGTTCTCATGCACAGAAGG+TGG | 0.627630 | 3_4:-69655987 | Msa0517940:CDS |
| AGCAGTCGCCTGAATACAAG+CGG | 0.633913 | 3_4:-69655799 | Msa0517940:intron |
| ACCGGCTGAATCACTAACAT+GGG | 0.639359 | 3_4:-69654964 | Msa0517940:CDS |
| TTGAAACTGCTCGTGACAGG+AGG | 0.640175 | 3_4:-69656007 | Msa0517940:CDS |
| AGACCAACGAGTAAGCTGAC+AGG | 0.646512 | 3_4:+69654906 | None:intergenic |
| TAAAACAAACATAAGTCCAA+GGG | 0.647579 | 3_4:+69655325 | None:intergenic |
| ACTGCAATCTCTTTGAGCTG+AGG | 0.649872 | 3_4:+69657404 | None:intergenic |
| CAGCGATTTGAGAAGTGCCG+AGG | 0.653773 | 3_4:+69653941 | None:intergenic |
| TCAGCATTTGCTATTTACTG+CGG | 0.654834 | 3_4:-69655026 | Msa0517940:CDS |
| CACGCCTCATCAGACAAAGG+AGG | 0.657857 | 3_4:+69655845 | None:intergenic |
| GAGAAGGGTCGTAATTCCCA+AGG | 0.663918 | 3_4:+69654061 | None:intergenic |
| GAAAGGAATTGTGGGCGTAG+CGG | 0.668134 | 3_4:+69656973 | None:intergenic |
| CTGGGGCCATACATAACGAG+GGG | 0.678781 | 3_4:-69656030 | Msa0517940:CDS |
| ATCACTAACATGGGTCCGTG+GGG | 0.679851 | 3_4:-69654955 | Msa0517940:CDS |
| GAAAGTACGAAAGAAATGGG+TGG | 0.680151 | 3_4:+69656895 | None:intergenic |
| GCTGGGGCCATACATAACGA+GGG | 0.687361 | 3_4:-69656031 | Msa0517940:CDS |
| AACCACGCCTCATCAGACAA+AGG | 0.710528 | 3_4:+69655842 | None:intergenic |
| AGTATGGACATCGTATGTGG+GGG | 0.718998 | 3_4:-69655352 | Msa0517940:CDS |
| AAATAGCAAATGCTGATGTG+AGG | 0.721510 | 3_4:+69655033 | None:intergenic |
| AAGATGATACAAGAACGAAG+AGG | 0.725599 | 3_4:+69657290 | None:intergenic |
| TGATTCACAAGCTCACAGGG+AGG | 0.754269 | 3_4:-69657000 | Msa0517940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATTAATAAGATAAAA+TGG | - | chr3_4:69655311-69655330 | Msa0517940:CDS | 10.0% |
| !! | AAGAAAAAAAAAAGATAAAA+TGG | - | chr3_4:69655342-69655361 | Msa0517940:CDS | 10.0% |
| !!! | TACATTTATTTTTGTAATTA+TGG | - | chr3_4:69656522-69656541 | Msa0517940:intron | 10.0% |
| !!! | AAATTTTCATTCTTTTTATG+TGG | - | chr3_4:69653829-69653848 | Msa0517940:three_prime_UTR | 15.0% |
| !!! | AATTTTCATTCTTTTTATGT+GGG | - | chr3_4:69653830-69653849 | Msa0517940:three_prime_UTR | 15.0% |
| !! | ATGAACATTAAAAACATAAA+GGG | + | chr3_4:69654359-69654378 | None:intergenic | 15.0% |
| !! | TTGATTTATAATTACAATTG+TGG | - | chr3_4:69654457-69654476 | Msa0517940:CDS | 15.0% |
| !! | TGATTTATAATTACAATTGT+GGG | - | chr3_4:69654458-69654477 | Msa0517940:CDS | 15.0% |
| !!! | TTTTAAACAACAAAGATTTA+CGG | - | chr3_4:69654483-69654502 | Msa0517940:intron | 15.0% |
| !!! | ATCAAATTGATTTACATATT+TGG | - | chr3_4:69655375-69655394 | Msa0517940:CDS | 15.0% |
| !! | GTATTTATTATGAAAATCAA+AGG | - | chr3_4:69655535-69655554 | Msa0517940:intron | 15.0% |
| !! | TTATGAAGAAAATATGAATA+CGG | + | chr3_4:69655719-69655738 | None:intergenic | 15.0% |
| !!! | TATTCATATTTTCTTCATAA+AGG | - | chr3_4:69655719-69655738 | Msa0517940:intron | 15.0% |
| !!! | ATTCATATTTTCTTCATAAA+GGG | - | chr3_4:69655720-69655739 | Msa0517940:intron | 15.0% |
| !! | ATTACAAGTACAAATAAAAT+AGG | + | chr3_4:69656207-69656226 | None:intergenic | 15.0% |
| !! | CAAAAAAATTTAAGTAACAA+AGG | + | chr3_4:69656590-69656609 | None:intergenic | 15.0% |
| !!! | AATTTTTTTGAAACTTAAAC+TGG | - | chr3_4:69656600-69656619 | Msa0517940:intron | 15.0% |
| !! | TAACAATATTTAACGATAAA+TGG | + | chr3_4:69656861-69656880 | None:intergenic | 15.0% |
| !! | ATTTATCGTTAAATATTGTT+AGG | - | chr3_4:69656860-69656879 | Msa0517940:intron | 15.0% |
| !! | TACAAACGAAATAAAAAATT+CGG | + | chr3_4:69657198-69657217 | None:intergenic | 15.0% |
| !!! | TGTAAAATTATACATTTTCA+AGG | - | chr3_4:69657323-69657342 | Msa0517940:five_prime_UTR | 15.0% |
| !! | AGAATGAAAATTTCAACAAA+GGG | + | chr3_4:69653822-69653841 | None:intergenic | 20.0% |
| !! | AAGAATGAAAATTTCAACAA+AGG | + | chr3_4:69653823-69653842 | None:intergenic | 20.0% |
| !! | GATGAACATTAAAAACATAA+AGG | + | chr3_4:69654360-69654379 | None:intergenic | 20.0% |
| !! | TGAATGTTTAGTATGTATAT+TGG | - | chr3_4:69654896-69654915 | Msa0517940:CDS | 20.0% |
| !!! | AACTTGTTGATTTACATTTT+TGG | - | chr3_4:69655429-69655448 | Msa0517940:intron | 20.0% |
| !!! | AAGAATTCAAGTTCATATAT+TGG | - | chr3_4:69655639-69655658 | Msa0517940:intron | 20.0% |
| !! | TTTATGTTGTTAAATTTCCA+CGG | + | chr3_4:69656643-69656662 | None:intergenic | 20.0% |
| ! | GAATGAAAATTTCAACAAAG+GGG | + | chr3_4:69653821-69653840 | None:intergenic | 25.0% |
| ! | AAGTACCTTAGGAATATTAT+GGG | + | chr3_4:69654153-69654172 | None:intergenic | 25.0% |
| !! | AAAGTACCTTAGGAATATTA+TGG | + | chr3_4:69654154-69654173 | None:intergenic | 25.0% |
| !!! | AGAATATAAGAAAGTACCTT+AGG | + | chr3_4:69654164-69654183 | None:intergenic | 25.0% |
| !!! | TTCAATTAGTGGATTTAGAT+GGG | - | chr3_4:69654303-69654322 | Msa0517940:CDS | 25.0% |
| ! | CATTAAAAACATAAAGGGTA+TGG | + | chr3_4:69654354-69654373 | None:intergenic | 25.0% |
| ! | GAATTCCTAGATTACAAAAT+GGG | + | chr3_4:69654619-69654638 | None:intergenic | 25.0% |
| ! | TGAATTCCTAGATTACAAAA+TGG | + | chr3_4:69654620-69654639 | None:intergenic | 25.0% |
| ! | AATTCAAAAACTTGCAATCT+TGG | - | chr3_4:69654634-69654653 | Msa0517940:intron | 25.0% |
| ! | ATTCAAAAACTTGCAATCTT+GGG | - | chr3_4:69654635-69654654 | Msa0517940:intron | 25.0% |
| ! | TAAACATTCACACAAAACAT+TGG | + | chr3_4:69654886-69654905 | None:intergenic | 25.0% |
| !! | ATTCAAGTTCATATATTGGA+TGG | - | chr3_4:69655643-69655662 | Msa0517940:intron | 25.0% |
| ! | TAAAACAAACATAAGTCCAA+GGG | + | chr3_4:69655696-69655715 | None:intergenic | 25.0% |
| ! | TACTTGTAATGATAATTGAG+TGG | - | chr3_4:69656217-69656236 | Msa0517940:intron | 25.0% |
| !! | ATTTAATACTTTTCCGAAGA+TGG | - | chr3_4:69656295-69656314 | Msa0517940:intron | 25.0% |
| !! | TTTAATACTTTTCCGAAGAT+GGG | - | chr3_4:69656296-69656315 | Msa0517940:intron | 25.0% |
| !! | TCATTTCAAGAATGTTTTCA+GGG | + | chr3_4:69656334-69656353 | None:intergenic | 25.0% |
| !! | TTCATTTCAAGAATGTTTTC+AGG | + | chr3_4:69656335-69656354 | None:intergenic | 25.0% |
| !!! | TGGTTGTCCTTTTATTTATT+CGG | - | chr3_4:69656467-69656486 | Msa0517940:intron | 25.0% |
| ! | GTACTTTCCGAATAAATAAA+AGG | + | chr3_4:69656477-69656496 | None:intergenic | 25.0% |
| ! | AGTTGAGACTATTATTATTC+AGG | - | chr3_4:69657132-69657151 | Msa0517940:intron | 25.0% |
| ! | AACGAAATAAAAAATTCGGT+CGG | + | chr3_4:69657194-69657213 | None:intergenic | 25.0% |
| !!! | ATTATACATTTTCAAGGAAG+AGG | - | chr3_4:69657329-69657348 | Msa0517940:five_prime_UTR | 25.0% |
| ! | TTTTCGCAAAACAAAACCTT+TGG | - | chr3_4:69653581-69653600 | Msa0517940:three_prime_UTR | 30.0% |
| TGGGTGGTGATAAATAAAAA+AGG | + | chr3_4:69653793-69653812 | None:intergenic | 30.0% | |
| TTTCAACAAAGGGGTTAAAT+GGG | + | chr3_4:69653812-69653831 | None:intergenic | 30.0% | |
| ATTTCAACAAAGGGGTTAAA+TGG | + | chr3_4:69653813-69653832 | None:intergenic | 30.0% | |
| ! | ACTATTCCAAATTTTGTCAC+TGG | - | chr3_4:69653932-69653951 | Msa0517940:CDS | 30.0% |
| ! | CTTGAATGATTGTTGTTGTA+TGG | + | chr3_4:69654084-69654103 | None:intergenic | 30.0% |
| TTTGGGTAAGTAGTTCAATT+AGG | + | chr3_4:69654253-69654272 | None:intergenic | 30.0% | |
| ! | GACATACATGATCAAGTTTT+GGG | + | chr3_4:69654270-69654289 | None:intergenic | 30.0% |
| ! | TGACATACATGATCAAGTTT+TGG | + | chr3_4:69654271-69654290 | None:intergenic | 30.0% |
| !! | CTTCAATTAGTGGATTTAGA+TGG | - | chr3_4:69654302-69654321 | Msa0517940:CDS | 30.0% |
| ! | AAACATAAAGGGTATGGTAT+TGG | + | chr3_4:69654348-69654367 | None:intergenic | 30.0% |
| TGATTCAATATGAGTCAAGT+AGG | - | chr3_4:69654416-69654435 | Msa0517940:intron | 30.0% | |
| AAACAACAAAGATTTACGGA+TGG | - | chr3_4:69654487-69654506 | Msa0517940:intron | 30.0% | |
| ATTTACGGATGGATATTATC+TGG | - | chr3_4:69654498-69654517 | Msa0517940:intron | 30.0% | |
| TTTCATCTGTGAAATGTCAA+TGG | - | chr3_4:69654820-69654839 | Msa0517940:intron | 30.0% | |
| !! | TGAAATGTCAATGGTGTTAT+GGG | - | chr3_4:69654829-69654848 | Msa0517940:intron | 30.0% |
| TGTTTACTATGGTCATACTT+GGG | - | chr3_4:69655087-69655106 | Msa0517940:CDS | 30.0% | |
| AATGACTGATTGGAAATTCA+CGG | - | chr3_4:69655142-69655161 | Msa0517940:intron | 30.0% | |
| TTTATACAGTTCCAAAAAGC+TGG | + | chr3_4:69655403-69655422 | None:intergenic | 30.0% | |
| ! | ACTTTTTGCAGTGTAAACAA+AGG | - | chr3_4:69655605-69655624 | Msa0517940:intron | 30.0% |
| TTCATATATTGGATGGAGTA+TGG | - | chr3_4:69655650-69655669 | Msa0517940:intron | 30.0% | |
| GTAAAACAAACATAAGTCCA+AGG | + | chr3_4:69655697-69655716 | None:intergenic | 30.0% | |
| GAAACTATGGTATTAGAATC+TGG | + | chr3_4:69655899-69655918 | None:intergenic | 30.0% | |
| TGTAATGATAATTGAGTGGT+TGG | - | chr3_4:69656221-69656240 | Msa0517940:intron | 30.0% | |
| TCAAAGAAATTTCGAATCAG+AGG | + | chr3_4:69656359-69656378 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTGAATTGTGATC+TGG | - | chr3_4:69656447-69656466 | Msa0517940:intron | 30.0% |
| !!! | TTCGGAAAGTACTTTTTTGA+AGG | - | chr3_4:69656485-69656504 | Msa0517940:intron | 30.0% |
| ! | TTTTCTTGTTGACAACCATA+AGG | + | chr3_4:69656739-69656758 | None:intergenic | 30.0% |
| AGCGGAATAATGATTATTGT+TGG | - | chr3_4:69656892-69656911 | Msa0517940:CDS | 30.0% | |
| GCGGAATAATGATTATTGTT+GGG | - | chr3_4:69656893-69656912 | Msa0517940:CDS | 30.0% | |
| TCATATGTACCTGTTTCATT+GGG | - | chr3_4:69656980-69656999 | Msa0517940:CDS | 30.0% | |
| TATGTTACTGCTTAATCACA+CGG | - | chr3_4:69657042-69657061 | Msa0517940:CDS | 30.0% | |
| TCATATCAATTGCATCATCA+TGG | + | chr3_4:69657239-69657258 | None:intergenic | 30.0% | |
| CTGTCGAATATTATTGATGA+TGG | - | chr3_4:69657394-69657413 | Msa0517940:five_prime_UTR | 30.0% | |
| AAGATGATACAAGAACGAAG+AGG | + | chr3_4:69653731-69653750 | None:intergenic | 35.0% | |
| ! | TCATTCTTTTTATGTGGGCA+TGG | - | chr3_4:69653835-69653854 | Msa0517940:three_prime_UTR | 35.0% |
| TGGTGGAGAGATAAAATGTT+TGG | - | chr3_4:69653960-69653979 | Msa0517940:CDS | 35.0% | |
| GGTGGAGAGATAAAATGTTT+GGG | - | chr3_4:69653961-69653980 | Msa0517940:CDS | 35.0% | |
| !!! | AGCAATTTTAAAACGCAGCA+AGG | - | chr3_4:69653986-69654005 | Msa0517940:CDS | 35.0% |
| ! | GATTGTTGTTGTATGGAAGA+AGG | + | chr3_4:69654077-69654096 | None:intergenic | 35.0% |
| ! | TCGGAAAGTACGAAAGAAAT+GGG | + | chr3_4:69654129-69654148 | None:intergenic | 35.0% |
| ! | ATCGGAAAGTACGAAAGAAA+TGG | + | chr3_4:69654130-69654149 | None:intergenic | 35.0% |
| CCTTAGGAATATTATGGGAT+CGG | + | chr3_4:69654148-69654167 | None:intergenic | 35.0% | |
| GCAATCTACGTGTTATCAAA+TGG | - | chr3_4:69654393-69654412 | Msa0517940:intron | 35.0% | |
| ! | CATGTCCCATTTTGTAATCT+AGG | - | chr3_4:69654611-69654630 | Msa0517940:intron | 35.0% |
| TTGATGTTGGCAAATAACAG+AGG | - | chr3_4:69654660-69654679 | Msa0517940:CDS | 35.0% | |
| ! | GTGAAATGTCAATGGTGTTA+TGG | - | chr3_4:69654828-69654847 | Msa0517940:intron | 35.0% |
| GTGTTTACTATGGTCATACT+TGG | - | chr3_4:69655086-69655105 | Msa0517940:CDS | 35.0% | |
| GTTTACTATGGTCATACTTG+GGG | - | chr3_4:69655088-69655107 | Msa0517940:CDS | 35.0% | |
| TTTACTATGGTCATACTTGG+GGG | - | chr3_4:69655089-69655108 | Msa0517940:CDS | 35.0% | |
| ATGACTGATTGGAAATTCAC+GGG | - | chr3_4:69655143-69655162 | Msa0517940:intron | 35.0% | |
| ! | ACAATCAGATGATTTTGCTC+AGG | + | chr3_4:69655267-69655286 | None:intergenic | 35.0% |
| !! | CATATTTGGAACCAGCTTTT+TGG | - | chr3_4:69655389-69655408 | Msa0517940:CDS | 35.0% |
| !! | CATTTTTGGAAACAGCTTTC+TGG | - | chr3_4:69655443-69655462 | Msa0517940:intron | 35.0% |
| ! | CTAAGAGTTTCTGCTTTGTT+TGG | - | chr3_4:69655764-69655783 | Msa0517940:intron | 35.0% |
| GATGGTTAAAAGTGGTTTAG+AGG | - | chr3_4:69655820-69655839 | Msa0517940:CDS | 35.0% | |
| GTTAAAAGTGGTTTAGAGGT+TGG | - | chr3_4:69655824-69655843 | Msa0517940:CDS | 35.0% | |
| GTATTAGAATCTGGATGAGT+TGG | + | chr3_4:69655890-69655909 | None:intergenic | 35.0% | |
| ! | TACCATAGTTTCTTTTCCTC+AGG | - | chr3_4:69655907-69655926 | Msa0517940:CDS | 35.0% |
| TTCCTGAGGAAAAGAAACTA+TGG | + | chr3_4:69655912-69655931 | None:intergenic | 35.0% | |
| AAATAGCAAATGCTGATGTG+AGG | + | chr3_4:69655988-69656007 | None:intergenic | 35.0% | |
| !! | TCAGCATTTGCTATTTACTG+CGG | - | chr3_4:69655992-69656011 | Msa0517940:CDS | 35.0% |
| ! | TGCTTACATGTTGATTGTCA+GGG | - | chr3_4:69656266-69656285 | Msa0517940:intron | 35.0% |
| GTTGTTAAATTTCCACGGAT+AGG | + | chr3_4:69656638-69656657 | None:intergenic | 35.0% | |
| !!! | TGTTTTAACAGCTCAATCAC+CGG | - | chr3_4:69656679-69656698 | Msa0517940:intron | 35.0% |
| ! | TAAGGCACTCACTGAAATTA+GGG | + | chr3_4:69656721-69656740 | None:intergenic | 35.0% |
| ! | ATAAGGCACTCACTGAAATT+AGG | + | chr3_4:69656722-69656741 | None:intergenic | 35.0% |
| TAATTTCAGTGAGTGCCTTA+TGG | - | chr3_4:69656721-69656740 | Msa0517940:intron | 35.0% | |
| ATGGTTGTCAACAAGAAAAC+TGG | - | chr3_4:69656740-69656759 | Msa0517940:intron | 35.0% | |
| TAATCATTATTCCGCTCAGA+AGG | + | chr3_4:69656888-69656907 | None:intergenic | 35.0% | |
| GATGCTTTACATGATGTACT+TGG | - | chr3_4:69656915-69656934 | Msa0517940:CDS | 35.0% | |
| !! | CATGATGTACTTGGTTTGTT+TGG | - | chr3_4:69656924-69656943 | Msa0517940:CDS | 35.0% |
| !! | TACTTGGTTTGTTTGGTTAC+AGG | - | chr3_4:69656931-69656950 | Msa0517940:CDS | 35.0% |
| AACAGGTACATATGAGAGAA+GGG | + | chr3_4:69656975-69656994 | None:intergenic | 35.0% | |
| AAACAGGTACATATGAGAGA+AGG | + | chr3_4:69656976-69656995 | None:intergenic | 35.0% | |
| CTCATATGTACCTGTTTCAT+TGG | - | chr3_4:69656979-69656998 | Msa0517940:CDS | 35.0% | |
| GAAATAAAAAATTCGGTCGG+TGG | + | chr3_4:69657191-69657210 | None:intergenic | 35.0% | |
| ! | TGCATCATCATGGATTTTCA+CGG | + | chr3_4:69657229-69657248 | None:intergenic | 35.0% |
| ACACTGCCAGTGACAAAATT+TGG | + | chr3_4:69653941-69653960 | None:intergenic | 40.0% | |
| ! | AAATTTTGTCACTGGCAGTG+TGG | - | chr3_4:69653940-69653959 | Msa0517940:CDS | 40.0% |
| TGTTTGATTCACAAGCTCAC+AGG | - | chr3_4:69654014-69654033 | Msa0517940:CDS | 40.0% | |
| GTTTGATTCACAAGCTCACA+GGG | - | chr3_4:69654015-69654034 | Msa0517940:CDS | 40.0% | |
| GGATGAGAGAAAGGAATTGT+GGG | + | chr3_4:69654056-69654075 | None:intergenic | 40.0% | |
| AGGATGAGAGAAAGGAATTG+TGG | + | chr3_4:69654057-69654076 | None:intergenic | 40.0% | |
| ATGGAAGAAGGATGAGAGAA+AGG | + | chr3_4:69654065-69654084 | None:intergenic | 40.0% | |
| AGAAATGGGTGGAAATGGAA+GGG | + | chr3_4:69654115-69654134 | None:intergenic | 40.0% | |
| AAGAAATGGGTGGAAATGGA+AGG | + | chr3_4:69654116-69654135 | None:intergenic | 40.0% | |
| ACGAAAGAAATGGGTGGAAA+TGG | + | chr3_4:69654120-69654139 | None:intergenic | 40.0% | |
| ! | GAAAGTACGAAAGAAATGGG+TGG | + | chr3_4:69654126-69654145 | None:intergenic | 40.0% |
| CCGATCCCATAATATTCCTA+AGG | - | chr3_4:69654145-69654164 | Msa0517940:intron | 40.0% | |
| CAGAGAGATGCTTCAATTAG+TGG | - | chr3_4:69654292-69654311 | Msa0517940:CDS | 40.0% | |
| ! | TAAGTGCTGCTGTTGCAATT+GGG | - | chr3_4:69654554-69654573 | Msa0517940:intron | 40.0% |
| GCAATCTTGGGATTTGATGT+TGG | - | chr3_4:69654647-69654666 | Msa0517940:CDS | 40.0% | |
| ! | GACTTCTGAGAAAACTGTTG+TGG | - | chr3_4:69654928-69654947 | Msa0517940:CDS | 40.0% |
| AAAACTGTTGTGGTGCTCTT+AGG | - | chr3_4:69654938-69654957 | Msa0517940:CDS | 40.0% | |
| AAACTGTTGTGGTGCTCTTA+GGG | - | chr3_4:69654939-69654958 | Msa0517940:CDS | 40.0% | |
| TTTCAACCCCTCGTTATGTA+TGG | + | chr3_4:69654997-69655016 | None:intergenic | 40.0% | |
| AGTCATTGAAAGACCAGATC+TGG | + | chr3_4:69655129-69655148 | None:intergenic | 40.0% | |
| ! | CTGGTCTTTCAATGACTGAT+TGG | - | chr3_4:69655132-69655151 | Msa0517940:intron | 40.0% |
| TCACTTTACCGCTTGTATTC+AGG | + | chr3_4:69655230-69655249 | None:intergenic | 40.0% | |
| !! | ATCTGGATGAGTTGGTCAAT+TGG | + | chr3_4:69655882-69655901 | None:intergenic | 40.0% |
| CTTGGCTGAGAATATTCAGT+TGG | + | chr3_4:69655938-69655957 | None:intergenic | 40.0% | |
| ! | CTATTTACTGCGGTCTCTTT+TGG | - | chr3_4:69656002-69656021 | Msa0517940:CDS | 40.0% |
| ! | TGATAATTGAGTGGTTGGTG+AGG | - | chr3_4:69656226-69656245 | Msa0517940:intron | 40.0% |
| ! | CTGCTTACATGTTGATTGTC+AGG | - | chr3_4:69656265-69656284 | Msa0517940:intron | 40.0% |
| ! | GCTTACATGTTGATTGTCAG+GGG | - | chr3_4:69656267-69656286 | Msa0517940:intron | 40.0% |
| ATCCATGTATCACCCATCTT+CGG | + | chr3_4:69656311-69656330 | None:intergenic | 40.0% | |
| ! | TGAGAATACATCGACTGTAC+AGG | - | chr3_4:69656376-69656395 | Msa0517940:intron | 40.0% |
| ATTTCCACGGATAGGCAAAA+TGG | + | chr3_4:69656630-69656649 | None:intergenic | 40.0% | |
| AAATTAGGGTTGCAGTTGCA+AGG | + | chr3_4:69656707-69656726 | None:intergenic | 40.0% | |
| ATTGTTAGGATCCTTCTGAG+CGG | - | chr3_4:69656874-69656893 | Msa0517940:CDS | 40.0% | |
| ! | CTAGAATGGCTGGTTGTTTA+AGG | - | chr3_4:69657355-69657374 | Msa0517940:five_prime_UTR | 40.0% |
| AATCTCTTTGAGCTGAGGGA+GGG | + | chr3_4:69653612-69653631 | None:intergenic | 45.0% | |
| CTGCAATCTCTTTGAGCTGA+GGG | + | chr3_4:69653616-69653635 | None:intergenic | 45.0% | |
| ACTGCAATCTCTTTGAGCTG+AGG | + | chr3_4:69653617-69653636 | None:intergenic | 45.0% | |
| CTGTATCAAAAAGCCAGTGG+CGG | + | chr3_4:69653694-69653713 | None:intergenic | 45.0% | |
| AACGAAGAGGATCTCAAGCT+CGG | + | chr3_4:69653718-69653737 | None:intergenic | 45.0% | |
| CAACAAAGGGGTTAAATGGG+TGG | + | chr3_4:69653809-69653828 | None:intergenic | 45.0% | |
| ! | GTAAGTGCTGCTGTTGCAAT+TGG | - | chr3_4:69654553-69654572 | Msa0517940:intron | 45.0% |
| ! | GGGTCATCGTGTTTCTAAGA+CGG | - | chr3_4:69654959-69654978 | Msa0517940:CDS | 45.0% |
| !! | TTTCTAAGACGGTGTCTGCT+GGG | - | chr3_4:69654970-69654989 | Msa0517940:CDS | 45.0% |
| CACAGAAGGTGGTTGGAATA+TGG | - | chr3_4:69655042-69655061 | Msa0517940:CDS | 45.0% | |
| GTGGTTGGAATATGGCTCTT+CGG | - | chr3_4:69655050-69655069 | Msa0517940:CDS | 45.0% | |
| TGCTGCATGGGTGTTTACTA+TGG | - | chr3_4:69655076-69655095 | Msa0517940:CDS | 45.0% | |
| TTAACCAGACTCACCAGATC+TGG | - | chr3_4:69655113-69655132 | Msa0517940:intron | 45.0% | |
| !! | AGCTTTCTGGAACTGTGCAA+AGG | - | chr3_4:69655456-69655475 | Msa0517940:intron | 45.0% |
| TGGAGTATGGACATCGTATG+TGG | - | chr3_4:69655663-69655682 | Msa0517940:intron | 45.0% | |
| GGAGTATGGACATCGTATGT+GGG | - | chr3_4:69655664-69655683 | Msa0517940:intron | 45.0% | |
| GAGTATGGACATCGTATGTG+GGG | - | chr3_4:69655665-69655684 | Msa0517940:intron | 45.0% | |
| AGTATGGACATCGTATGTGG+GGG | - | chr3_4:69655666-69655685 | Msa0517940:intron | 45.0% | |
| !! | AGTTTCTGCTTTGTTTGGCC+TGG | - | chr3_4:69655769-69655788 | Msa0517940:intron | 45.0% |
| !! | GTTTCTGCTTTGTTTGGCCT+GGG | - | chr3_4:69655770-69655789 | Msa0517940:intron | 45.0% |
| !! | TATTCAGTTGGTGGTTCCTG+AGG | + | chr3_4:69655926-69655945 | None:intergenic | 45.0% |
| GGCTGAGAATATTCAGTTGG+TGG | + | chr3_4:69655935-69655954 | None:intergenic | 45.0% | |
| AGACGATAAGGGCTTACTCT+TGG | + | chr3_4:69655956-69655975 | None:intergenic | 45.0% | |
| ACCGGCTGAATCACTAACAT+GGG | - | chr3_4:69656054-69656073 | Msa0517940:CDS | 45.0% | |
| ACCCATGTTAGTGATTCAGC+CGG | + | chr3_4:69656058-69656077 | None:intergenic | 45.0% | |
| AATCACTAACATGGGTCCGT+GGG | - | chr3_4:69656062-69656081 | Msa0517940:intron | 45.0% | |
| TCTTTACTTTAGCAGCCCCA+CGG | + | chr3_4:69656081-69656100 | None:intergenic | 45.0% | |
| TTCCGAAGATGGGTGATACA+TGG | - | chr3_4:69656306-69656325 | Msa0517940:intron | 45.0% | |
| TGTTTGGTTACAGGTCACCT+TGG | - | chr3_4:69656940-69656959 | Msa0517940:CDS | 45.0% | |
| GTTTGGTTACAGGTCACCTT+GGG | - | chr3_4:69656941-69656960 | Msa0517940:CDS | 45.0% | |
| TGTGCAGTACCCAATGAAAC+AGG | + | chr3_4:69656992-69657011 | None:intergenic | 45.0% | |
| TGCTTAATCACACGGTTCGA+AGG | - | chr3_4:69657050-69657069 | Msa0517940:exon | 45.0% | |
| ! | TAGTTTGCCTTGACAACCTG+AGG | + | chr3_4:69657103-69657122 | None:intergenic | 45.0% |
| AAATTCGGTCGGTGGACAAT+TGG | + | chr3_4:69657183-69657202 | None:intergenic | 45.0% | |
| CAAGGAAGAGGAGTCTAGAA+TGG | - | chr3_4:69657341-69657360 | Msa0517940:five_prime_UTR | 45.0% | |
| CTGAGGGAGGGTTTAACCAA+AGG | + | chr3_4:69653600-69653619 | None:intergenic | 50.0% | |
| CAATCTCTTTGAGCTGAGGG+AGG | + | chr3_4:69653613-69653632 | None:intergenic | 50.0% | |
| TATCAAAAAGCCAGTGGCGG+TGG | + | chr3_4:69653691-69653710 | None:intergenic | 50.0% | |
| !!! | CGCCACTGGCTTTTTGATAC+AGG | - | chr3_4:69653692-69653711 | Msa0517940:three_prime_UTR | 50.0% |
| GGCCTGTATCAAAAAGCCAG+TGG | + | chr3_4:69653697-69653716 | None:intergenic | 50.0% | |
| ! | TTTTGTCACTGGCAGTGTGG+TGG | - | chr3_4:69653943-69653962 | Msa0517940:CDS | 50.0% |
| TGATTCACAAGCTCACAGGG+AGG | - | chr3_4:69654018-69654037 | Msa0517940:CDS | 50.0% | |
| GAAAGGAATTGTGGGCGTAG+CGG | + | chr3_4:69654048-69654067 | None:intergenic | 50.0% | |
| !! | GTTTCTAAGACGGTGTCTGC+TGG | - | chr3_4:69654969-69654988 | Msa0517940:CDS | 50.0% |
| !! | TTCTAAGACGGTGTCTGCTG+GGG | - | chr3_4:69654971-69654990 | Msa0517940:CDS | 50.0% |
| TTGAAACTGCTCGTGACAGG+AGG | - | chr3_4:69655011-69655030 | Msa0517940:CDS | 50.0% | |
| AGGAGGTTCTCATGCACAGA+AGG | - | chr3_4:69655028-69655047 | Msa0517940:CDS | 50.0% | |
| AGGTTCTCATGCACAGAAGG+TGG | - | chr3_4:69655031-69655050 | Msa0517940:CDS | 50.0% | |
| TCTCATGCACAGAAGGTGGT+TGG | - | chr3_4:69655035-69655054 | Msa0517940:CDS | 50.0% | |
| AAGACCAGATCTGGTGAGTC+TGG | + | chr3_4:69655120-69655139 | None:intergenic | 50.0% | |
| GTTCCCTCCTTTGTCTGATG+AGG | - | chr3_4:69655169-69655188 | Msa0517940:intron | 50.0% | |
| ACGCCTCATCAGACAAAGGA+GGG | + | chr3_4:69655175-69655194 | None:intergenic | 50.0% | |
| AACCACGCCTCATCAGACAA+AGG | + | chr3_4:69655179-69655198 | None:intergenic | 50.0% | |
| AGCAGTCGCCTGAATACAAG+CGG | - | chr3_4:69655219-69655238 | Msa0517940:CDS | 50.0% | |
| ! | GGCTGGTGGATGGTTAAAAG+TGG | - | chr3_4:69655812-69655831 | Msa0517940:CDS | 50.0% |
| TGTTGTTATGCCTGAGCCAC+CGG | - | chr3_4:69656036-69656055 | Msa0517940:CDS | 50.0% | |
| CATGTTAGTGATTCAGCCGG+TGG | + | chr3_4:69656055-69656074 | None:intergenic | 50.0% | |
| ! | CACCGGCTGAATCACTAACA+TGG | - | chr3_4:69656053-69656072 | Msa0517940:CDS | 50.0% |
| GAATCACTAACATGGGTCCG+TGG | - | chr3_4:69656061-69656080 | Msa0517940:CDS | 50.0% | |
| ATCACTAACATGGGTCCGTG+GGG | - | chr3_4:69656063-69656082 | Msa0517940:intron | 50.0% | |
| TTGCCTGTCAGCTTACTCGT+TGG | - | chr3_4:69656109-69656128 | Msa0517940:intron | 50.0% | |
| AGACCAACGAGTAAGCTGAC+AGG | + | chr3_4:69656115-69656134 | None:intergenic | 50.0% | |
| !! | GTTGGTCTTACTGCTGTCTC+TGG | - | chr3_4:69656127-69656146 | Msa0517940:intron | 50.0% |
| ! | GTCTCTGGTGCATTTGTTGC+AGG | - | chr3_4:69656142-69656161 | Msa0517940:intron | 50.0% |
| TCCACGGATAGGCAAAATGG+CGG | + | chr3_4:69656627-69656646 | None:intergenic | 50.0% | |
| TGGACATACATCCTGCAGTC+CGG | - | chr3_4:69656760-69656779 | Msa0517940:intron | 50.0% | |
| !! | TCTGTGATCGGAGGCATCTT+TGG | - | chr3_4:69656783-69656802 | Msa0517940:intron | 50.0% |
| CTTTGGCATGGCATCTGTTC+AGG | - | chr3_4:69656800-69656819 | Msa0517940:intron | 50.0% | |
| GAGAAGGGTCGTAATTCCCA+AGG | + | chr3_4:69656960-69656979 | None:intergenic | 50.0% | |
| ! | TTGGGTACTGCACATCAAGC+TGG | - | chr3_4:69656998-69657017 | Msa0517940:CDS | 50.0% |
| !! | GATTTGAGAAGTGCCGAGGA+TGG | + | chr3_4:69657076-69657095 | None:intergenic | 50.0% |
| ACTTCTCAAATCGCTGCCTC+AGG | - | chr3_4:69657084-69657103 | Msa0517940:intron | 50.0% | |
| ! | GAAGAGGAGTCTAGAATGGC+TGG | - | chr3_4:69657345-69657364 | Msa0517940:five_prime_UTR | 50.0% |
| TGCTGGGGCCATACATAACG+AGG | - | chr3_4:69654986-69655005 | Msa0517940:CDS | 55.0% | |
| GCTGGGGCCATACATAACGA+GGG | - | chr3_4:69654987-69655006 | Msa0517940:CDS | 55.0% | |
| CTGGGGCCATACATAACGAG+GGG | - | chr3_4:69654988-69655007 | Msa0517940:CDS | 55.0% | |
| GGGTTGAAACTGCTCGTGAC+AGG | - | chr3_4:69655008-69655027 | Msa0517940:CDS | 55.0% | |
| CACGCCTCATCAGACAAAGG+AGG | + | chr3_4:69655176-69655195 | None:intergenic | 55.0% | |
| CTCCTTTGTCTGATGAGGCG+TGG | - | chr3_4:69655174-69655193 | Msa0517940:intron | 55.0% | |
| ATGGACATCGTATGTGGGGG+AGG | - | chr3_4:69655669-69655688 | Msa0517940:intron | 55.0% | |
| TGGACATCGTATGTGGGGGA+GGG | - | chr3_4:69655670-69655689 | Msa0517940:intron | 55.0% | |
| GGTGAGCTGCGAGACGATAA+GGG | + | chr3_4:69655967-69655986 | None:intergenic | 55.0% | |
| AGGTGAGCTGCGAGACGATA+AGG | + | chr3_4:69655968-69655987 | None:intergenic | 55.0% | |
| !! | ACCGCCATTTTGCCTATCCG+TGG | - | chr3_4:69656623-69656642 | Msa0517940:intron | 55.0% |
| GGGTTGCAGTTGCAAGGATC+CGG | + | chr3_4:69656701-69656720 | None:intergenic | 55.0% | |
| AGATGCCTCCGATCACAGAC+CGG | + | chr3_4:69656782-69656801 | None:intergenic | 55.0% | |
| !! | GATCGGAGGCATCTTTGGCA+TGG | - | chr3_4:69656788-69656807 | Msa0517940:intron | 55.0% |
| !! | CAGCGATTTGAGAAGTGCCG+AGG | + | chr3_4:69657080-69657099 | None:intergenic | 55.0% |
| ! | ATCGCTGCCTCAGGTTGTCA+AGG | - | chr3_4:69657093-69657112 | Msa0517940:intron | 55.0% |
| CAAAAAGCCAGTGGCGGTGG+CGG | + | chr3_4:69653688-69653707 | None:intergenic | 60.0% | |
| GCTCTTCGGCTCTGCTGCAT+GGG | - | chr3_4:69655064-69655083 | Msa0517940:CDS | 60.0% | |
| !! | GCTTTGTTTGGCCTGGGTGC+CGG | - | chr3_4:69655776-69655795 | Msa0517940:intron | 60.0% |
| ! | CTTTGTTTGGCCTGGGTGCC+GGG | - | chr3_4:69655777-69655796 | Msa0517940:intron | 60.0% |
| ! | GGGTCTCATTGGCTGGTGGA+TGG | - | chr3_4:69655802-69655821 | Msa0517940:CDS | 60.0% |
| AGTGATTCAGCCGGTGGCTC+AGG | + | chr3_4:69656049-69656068 | None:intergenic | 60.0% | |
| CCTGCAGTCCGGTCTGTGAT+CGG | - | chr3_4:69656771-69656790 | Msa0517940:intron | 60.0% | |
| CACGGTTCGAAGGCCATCCT+CGG | - | chr3_4:69657060-69657079 | Msa0517940:exon | 60.0% | |
| GGCTCTTCGGCTCTGCTGCA+TGG | - | chr3_4:69655063-69655082 | Msa0517940:CDS | 65.0% | |
| CCAGCCAATGAGACCCTGCC+CGG | + | chr3_4:69655798-69655817 | None:intergenic | 65.0% | |
| ! | GGCAGGGTCTCATTGGCTGG+TGG | - | chr3_4:69655798-69655817 | Msa0517940:intron | 65.0% |
| CCGATCACAGACCGGACTGC+AGG | + | chr3_4:69656774-69656793 | None:intergenic | 65.0% | |
| GCAGTCCGGTCTGTGATCGG+AGG | - | chr3_4:69656774-69656793 | Msa0517940:intron | 65.0% | |
| GTGGCAGGGGAGGGGAGAAG+CGG | + | chr3_4:69653659-69653678 | None:intergenic | 70.0% | |
| ! | AAAGCCAGTGGCGGTGGCGG+CGG | + | chr3_4:69653685-69653704 | None:intergenic | 70.0% |
| CGTATGTGGGGGAGGGCCCT+TGG | - | chr3_4:69655677-69655696 | Msa0517940:intron | 70.0% | |
| !! | TTTGGCCTGGGTGCCGGGCA+GGG | - | chr3_4:69655782-69655801 | Msa0517940:intron | 70.0% |
| ! | GGTGCCGGGCAGGGTCTCAT+TGG | - | chr3_4:69655791-69655810 | Msa0517940:intron | 70.0% |
| CCGGGCAGGGTCTCATTGGC+TGG | - | chr3_4:69655795-69655814 | Msa0517940:intron | 70.0% | |
| !! | GTTTGGCCTGGGTGCCGGGC+AGG | - | chr3_4:69655781-69655800 | Msa0517940:intron | 75.0% |
| TGAGACCCTGCCCGGCACCC+AGG | + | chr3_4:69655790-69655809 | None:intergenic | 75.0% | |
| ! | GGCGGCGCGTGGCAGGGGAG+GGG | + | chr3_4:69653667-69653686 | None:intergenic | 85.0% |
| ! | CGGCGGCGCGTGGCAGGGGA+GGG | + | chr3_4:69653668-69653687 | None:intergenic | 85.0% |
| ! | GTGGCGGCGGCGCGTGGCAG+GGG | + | chr3_4:69653672-69653691 | None:intergenic | 85.0% |
| !! | GGTGGCGGCGGCGCGTGGCA+GGG | + | chr3_4:69653673-69653692 | None:intergenic | 85.0% |
| ! | GCGGCGGCGCGTGGCAGGGG+AGG | + | chr3_4:69653669-69653688 | None:intergenic | 90.0% |
| !! | CGGTGGCGGCGGCGCGTGGC+AGG | + | chr3_4:69653674-69653693 | None:intergenic | 90.0% |
| !! | GTGGCGGTGGCGGCGGCGCG+TGG | + | chr3_4:69653678-69653697 | None:intergenic | 90.0% |
| ! | CGCGCCGCCGCCACCGCCAC+TGG | - | chr3_4:69653678-69653697 | Msa0517940:three_prime_UTR | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69653573 | 69657467 | 69653573 | ID=Msa0517940;Name=Msa0517940 |
| chr3_4 | mRNA | 69653573 | 69657467 | 69653573 | ID=Msa0517940-mRNA-1;Parent=Msa0517940;Name=Msa0517940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=205|0.75|0.88|1|0.87|0.77|9|344|465 |
| chr3_4 | exon | 69653573 | 69654087 | 69653573 | ID=Msa0517940-mRNA-1:exon:18609;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69654219 | 69654350 | 69654219 | ID=Msa0517940-mRNA-1:exon:18608;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69654449 | 69654487 | 69654449 | ID=Msa0517940-mRNA-1:exon:18607;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69654643 | 69654753 | 69654643 | ID=Msa0517940-mRNA-1:exon:18606;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69654866 | 69655111 | 69654866 | ID=Msa0517940-mRNA-1:exon:18605;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69655199 | 69655424 | 69655199 | ID=Msa0517940-mRNA-1:exon:18604;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69655800 | 69656080 | 69655800 | ID=Msa0517940-mRNA-1:exon:18603;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69656874 | 69657082 | 69656874 | ID=Msa0517940-mRNA-1:exon:18602;Parent=Msa0517940-mRNA-1 |
| chr3_4 | exon | 69657280 | 69657467 | 69657280 | ID=Msa0517940-mRNA-1:exon:18601;Parent=Msa0517940-mRNA-1 |
| chr3_4 | five_prime_UTR | 69657280 | 69657467 | 69657280 | ID=Msa0517940-mRNA-1:five_prime_utr;Parent=Msa0517940-mRNA-1 |
| chr3_4 | five_prime_UTR | 69657066 | 69657082 | 69657066 | ID=Msa0517940-mRNA-1:five_prime_utr;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69656874 | 69657065 | 69656874 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69655800 | 69656080 | 69655800 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69655199 | 69655424 | 69655199 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69654866 | 69655111 | 69654866 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69654643 | 69654753 | 69654643 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69654449 | 69654487 | 69654449 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69654219 | 69654350 | 69654219 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | CDS | 69653917 | 69654087 | 69653917 | ID=Msa0517940-mRNA-1:cds;Parent=Msa0517940-mRNA-1 |
| chr3_4 | three_prime_UTR | 69653573 | 69653916 | 69653573 | ID=Msa0517940-mRNA-1:three_prime_utr;Parent=Msa0517940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
