Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453760 | sp|Q9FKT8|COX15_ARATH | 79.293 | 396 | 82 | 0 | 57 | 452 | 60 | 455 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453760 | G7JAZ9 | 98.894 | 452 | 5 | 0 | 1 | 452 | 48 | 499 | 0.0 | 913 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621210 | Msa1453760 | 0.932624 | 6.438183e-95 | -8.615850e-47 |
| Msa0517940 | Msa1453760 | 0.839805 | 1.272206e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453760 | MtrunA17_Chr3g0129841 | 98.894 | 452 | 5 | 0 | 1 | 452 | 1 | 452 | 0.0 | 910 |
| Msa1453760 | MtrunA17_Chr5g0447211 | 89.201 | 463 | 35 | 6 | 1 | 452 | 1 | 459 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453760 | AT5G56090.1 | 79.293 | 396 | 82 | 0 | 57 | 452 | 60 | 455 | 0.0 | 640 |
Find 159 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAATGGCTGGTTGTTTA+AGG | 0.158189 | tig0034892:+15709 | Msa1453760:three_prime_UTR |
| CTATTTACTGCGGTCTCTTT+TGG | 0.194502 | tig0034892:+14353 | Msa1453760:CDS |
| ATAAGGCACTCACTGAAATT+AGG | 0.203303 | tig0034892:-15070 | Msa1453760:intergenic |
| CGCGCCGCCGCCACCGCCAC+TGG | 0.220692 | tig0034892:+12027 | Msa1453760:five_prime_UTR |
| CTTTGGCATGGCATCTGTTC+AGG | 0.249061 | tig0034892:+15151 | Msa1453760:CDS |
| AGTTGAGACTATTATTATTC+AGG | 0.264715 | tig0034892:+15486 | Msa1453760:three_prime_UTR |
| AAGAATTCAAGTTCATATAT+TGG | 0.279114 | tig0034892:+13990 | Msa1453760:CDS |
| GTCTCTGGTGCATTTGTTGC+AGG | 0.281738 | tig0034892:+14493 | Msa1453760:CDS |
| GATGGTTAAAAGTGGTTTAG+AGG | 0.285283 | tig0034892:+14171 | Msa1453760:CDS |
| CGGTGGCGGCGGCGCGTGGC+AGG | 0.286601 | tig0034892:-12020 | Msa1453760:intergenic |
| GTGGCGGCGGCGCGTGGCAG+GGG | 0.288953 | tig0034892:-12018 | Msa1453760:intergenic |
| CTAAGAGTTTCTGCTTTGTT+TGG | 0.292561 | tig0034892:+14115 | Msa1453760:CDS |
| GTTTGGCCTGGGTGCCGGGC+AGG | 0.295557 | tig0034892:+14132 | Msa1453760:CDS |
| TCACTTTACCGCTTGTATTC+AGG | 0.298272 | tig0034892:-13578 | Msa1453760:intergenic |
| CTCATATGTACCTGTTTCAT+TGG | 0.300963 | tig0034892:+15333 | Msa1453760:CDS |
| AAAGTACCTTAGGAATATTA+TGG | 0.303428 | tig0034892:-12502 | Msa1453760:intergenic |
| GCGGCGGCGCGTGGCAGGGG+AGG | 0.308288 | tig0034892:-12015 | Msa1453760:intergenic |
| GTTTCTAAGACGGTGTCTGC+TGG | 0.323987 | tig0034892:+13320 | Msa1453760:CDS |
| AGTTTCTGCTTTGTTTGGCC+TGG | 0.325487 | tig0034892:+14120 | Msa1453760:CDS |
| GCTTTGTTTGGCCTGGGTGC+CGG | 0.332317 | tig0034892:+14127 | Msa1453760:CDS |
| TCTGTGATCGGAGGCATCTT+TGG | 0.335894 | tig0034892:+15134 | Msa1453760:CDS |
| GGTGGCGGCGGCGCGTGGCA+GGG | 0.338845 | tig0034892:-12019 | Msa1453760:intergenic |
| CACAGAAGGTGGTTGGAATA+TGG | 0.346396 | tig0034892:+13393 | Msa1453760:CDS |
| CTTTGTTTGGCCTGGGTGCC+GGG | 0.347622 | tig0034892:+14128 | Msa1453760:CDS |
| TTCATATATTGGATGGAGTA+TGG | 0.349375 | tig0034892:+14001 | Msa1453760:CDS |
| GGCGGCGCGTGGCAGGGGAG+GGG | 0.353046 | tig0034892:-12013 | Msa1453760:intergenic |
| TAATTTCAGTGAGTGCCTTA+TGG | 0.353453 | tig0034892:+15072 | Msa1453760:CDS |
| AAAGCCAGTGGCGGTGGCGG+CGG | 0.368260 | tig0034892:-12031 | Msa1453760:intergenic |
| CGGCGGCGCGTGGCAGGGGA+GGG | 0.371904 | tig0034892:-12014 | Msa1453760:intergenic |
| CTTGAATGATTGTTGTTGTA+TGG | 0.372902 | tig0034892:-12432 | Msa1453760:intergenic |
| CTGGTCTTTCAATGACTGAT+TGG | 0.376044 | tig0034892:+13483 | Msa1453760:CDS |
| GGTGCCGGGCAGGGTCTCAT+TGG | 0.377328 | tig0034892:+14142 | Msa1453760:CDS |
| TTTGGCCTGGGTGCCGGGCA+GGG | 0.387716 | tig0034892:+14133 | Msa1453760:CDS |
| AAATTCGGTCGGTGGACAAT+TGG | 0.388965 | tig0034892:-15534 | Msa1453760:intergenic |
| CTGTCGAATATTATTGATGA+TGG | 0.390093 | tig0034892:+15748 | Msa1453760:three_prime_UTR |
| GTTTCTGCTTTGTTTGGCCT+GGG | 0.391846 | tig0034892:+14121 | Msa1453760:CDS |
| GGCTCTTCGGCTCTGCTGCA+TGG | 0.395595 | tig0034892:+13414 | Msa1453760:CDS |
| ATGGTTGTCAACAAGAAAAC+TGG | 0.401662 | tig0034892:+15091 | Msa1453760:CDS |
| TAAGGCACTCACTGAAATTA+GGG | 0.406985 | tig0034892:-15069 | Msa1453760:intergenic |
| AGGTGAGCTGCGAGACGATA+AGG | 0.414513 | tig0034892:-14316 | Msa1453760:intergenic |
| TGCTGCATGGGTGTTTACTA+TGG | 0.415471 | tig0034892:+13427 | Msa1453760:CDS |
| GGCTGAGAATATTCAGTTGG+TGG | 0.416405 | tig0034892:-14283 | Msa1453760:intergenic |
| GTGGCGGTGGCGGCGGCGCG+TGG | 0.426527 | tig0034892:-12024 | Msa1453760:intergenic |
| CTGCAATCTCTTTGAGCTGA+GGG | 0.429631 | tig0034892:-11962 | Msa1453760:intergenic |
| TTTCTAAGACGGTGTCTGCT+GGG | 0.431255 | tig0034892:+13321 | Msa1453760:CDS |
| CCGGGCAGGGTCTCATTGGC+TGG | 0.436364 | tig0034892:+14146 | Msa1453760:CDS |
| TCATATGTACCTGTTTCATT+GGG | 0.436558 | tig0034892:+15334 | Msa1453760:CDS |
| ATCGGAAAGTACGAAAGAAA+TGG | 0.436920 | tig0034892:-12478 | Msa1453760:intergenic |
| GTTTGGTTACAGGTCACCTT+GGG | 0.440175 | tig0034892:+15295 | Msa1453760:intron |
| TTTCAACCCCTCGTTATGTA+TGG | 0.447927 | tig0034892:-13345 | Msa1453760:intergenic |
| AAGTACCTTAGGAATATTAT+GGG | 0.454815 | tig0034892:-12501 | Msa1453760:intergenic |
| AGTGATTCAGCCGGTGGCTC+AGG | 0.456013 | tig0034892:-14397 | Msa1453760:intergenic |
| AGTCATTGAAAGACCAGATC+TGG | 0.459275 | tig0034892:-13477 | Msa1453760:intergenic |
| GGGTTGCAGTTGCAAGGATC+CGG | 0.461286 | tig0034892:-15049 | Msa1453760:intergenic |
| GTGTTTACTATGGTCATACT+TGG | 0.461574 | tig0034892:+13437 | Msa1453760:CDS |
| AAGACCAGATCTGGTGAGTC+TGG | 0.463516 | tig0034892:-13468 | Msa1453760:intergenic |
| TTCCGAAGATGGGTGATACA+TGG | 0.467914 | tig0034892:+14657 | Msa1453760:CDS |
| TGTTTACTATGGTCATACTT+GGG | 0.468604 | tig0034892:+13438 | Msa1453760:CDS |
| TCATATCAATTGCATCATCA+TGG | 0.469035 | tig0034892:-15590 | Msa1453760:intergenic |
| ACGAAAGAAATGGGTGGAAG+TGG | 0.469578 | tig0034892:-12468 | Msa1453760:intergenic |
| AGGATGAGAGAAAGGAATTG+TGG | 0.470689 | tig0034892:-12405 | Msa1453760:intergenic |
| GTGGTTGGAATATGGCTCTT+CGG | 0.471056 | tig0034892:+13401 | Msa1453760:CDS |
| CCAGCCAATGAGACCCTGCC+CGG | 0.472748 | tig0034892:-14146 | Msa1453760:intergenic |
| TGGTGGAGAGATAAAATGTT+TGG | 0.475471 | tig0034892:+12311 | Msa1453760:exon |
| GGGTCTCATTGGCTGGTGGA+TGG | 0.475646 | tig0034892:+14153 | Msa1453760:CDS |
| GGATGAGAGAAAGGAATTGT+GGG | 0.480774 | tig0034892:-12404 | Msa1453760:intergenic |
| AATGACTGATTGGAAATTCA+CGG | 0.482925 | tig0034892:+13493 | Msa1453760:CDS |
| ATCCATGTATCACCCATCTT+CGG | 0.483371 | tig0034892:-14659 | Msa1453760:intergenic |
| TTAACCAGACTCACCAGATC+TGG | 0.485033 | tig0034892:+13464 | Msa1453760:CDS |
| ACTTCTCAAATCGCTGCCTC+AGG | 0.487353 | tig0034892:+15438 | Msa1453760:CDS |
| CAAGGAAGAGGAGTCTAGAA+TGG | 0.487497 | tig0034892:+15695 | Msa1453760:three_prime_UTR |
| TGTGCAGTACCCAATGAAAC+AGG | 0.491136 | tig0034892:-15343 | Msa1453760:intergenic |
| GCTCTTCGGCTCTGCTGCAT+GGG | 0.492096 | tig0034892:+13415 | Msa1453760:CDS |
| GTTTACTATGGTCATACTTG+GGG | 0.495384 | tig0034892:+13439 | Msa1453760:CDS |
| GGGTTGAAACTGCTCGTGAC+AGG | 0.495776 | tig0034892:+13359 | Msa1453760:CDS |
| ATGGAAGAAGGATGAGAGAA+AGG | 0.500541 | tig0034892:-12413 | Msa1453760:intergenic |
| GTTGGTCTTACTGCTGTCTC+TGG | 0.501689 | tig0034892:+14478 | Msa1453760:CDS |
| ATTCAAGTTCATATATTGGA+TGG | 0.507471 | tig0034892:+13994 | Msa1453760:CDS |
| TGTTGTTATGCCTGAGCCAC+CGG | 0.507525 | tig0034892:+14387 | Msa1453760:CDS |
| AAGAAATGGGTGGAAGTGGA+AGG | 0.508526 | tig0034892:-12464 | Msa1453760:intergenic |
| TGGAGTATGGACATCGTATG+TGG | 0.508780 | tig0034892:+14014 | Msa1453760:CDS |
| TTATGAAGAAAATATGAATA+CGG | 0.509606 | tig0034892:-14067 | Msa1453760:intergenic |
| CCTGCAGTCCGGTCTGTGAT+CGG | 0.510812 | tig0034892:+15122 | Msa1453760:CDS |
| GGAGTATGGACATCGTATGT+GGG | 0.512226 | tig0034892:+14015 | Msa1453760:CDS |
| TCAAAGAAATTTCGAATCAG+AGG | 0.513360 | tig0034892:-14707 | Msa1453760:intergenic |
| TTGGGTACTGCACATCAAGC+TGG | 0.514431 | tig0034892:+15352 | Msa1453760:CDS |
| GAAGAGGAGTCTAGAATGGC+TGG | 0.516054 | tig0034892:+15699 | Msa1453760:three_prime_UTR |
| TGTTTGATTCACAAGCTCAC+AGG | 0.516244 | tig0034892:+12365 | Msa1453760:CDS |
| TGCTTAATCACACGGTTCGA+AGG | 0.519149 | tig0034892:+15404 | Msa1453760:CDS |
| CCGATCCCATAATATTCCTA+AGG | 0.521182 | tig0034892:+12496 | Msa1453760:CDS |
| AGACGATAAGGGCTTACTCT+TGG | 0.530529 | tig0034892:-14304 | Msa1453760:intergenic |
| TGTTTGGTTACAGGTCACCT+TGG | 0.532225 | tig0034892:+15294 | Msa1453760:intron |
| TCGGAAAGTACGAAAGAAAT+GGG | 0.534716 | tig0034892:-12477 | Msa1453760:intergenic |
| TGAGACCCTGCCCGGCACCC+AGG | 0.535609 | tig0034892:-14138 | Msa1453760:intergenic |
| CACGGTTCGAAGGCCATCCT+CGG | 0.537075 | tig0034892:+15414 | Msa1453760:CDS |
| GGCAGGGTCTCATTGGCTGG+TGG | 0.537460 | tig0034892:+14149 | Msa1453760:CDS |
| TGAGAATACATCGACTGTAC+AGG | 0.539915 | tig0034892:+14727 | Msa1453760:CDS |
| AAATTAGGGTTGCAGTTGCA+AGG | 0.542607 | tig0034892:-15055 | Msa1453760:intergenic |
| AATCACTAACATGGGTCCGT+GGG | 0.544047 | tig0034892:+14413 | Msa1453760:CDS |
| GATTGTTGTTGTATGGAAGA+AGG | 0.544230 | tig0034892:-12425 | Msa1453760:intergenic |
| CCGATCACAGACCGGACTGC+AGG | 0.547715 | tig0034892:-15122 | Msa1453760:intergenic |
| CTTGGCTGAGAATATTCAGT+TGG | 0.547748 | tig0034892:-14286 | Msa1453760:intergenic |
| ATGACTGATTGGAAATTCAC+GGG | 0.548486 | tig0034892:+13494 | Msa1453760:CDS |
| CTCCTTTGTCTGATGAGGCG+TGG | 0.550365 | tig0034892:+13525 | Msa1453760:CDS |
| TGAGCTGAGGGTTTAACCAA+AGG | 0.554120 | tig0034892:-11950 | Msa1453760:intergenic |
| CCTTAGGAATATTATGGGAT+CGG | 0.554125 | tig0034892:-12496 | Msa1453760:intergenic |
| GTGGCAGGGGAGGGGAGAAG+CGG | 0.554242 | tig0034892:-12005 | Msa1453760:intergenic |
| GGTGAGCTGCGAGACGATAA+GGG | 0.554481 | tig0034892:-14315 | Msa1453760:intergenic |
| CACCGGCTGAATCACTAACA+TGG | 0.555370 | tig0034892:+14404 | Msa1453760:CDS |
| GGTGGAGAGATAAAATGTTT+GGG | 0.557457 | tig0034892:+12312 | Msa1453760:exon |
| TTGCCTGTCAGCTTACTCGT+TGG | 0.557599 | tig0034892:+14460 | Msa1453760:CDS |
| AAACAGGTACATATGAGAGA+AGG | 0.559091 | tig0034892:-15327 | Msa1453760:intergenic |
| TCTCATGCACAGAAGGTGGT+TGG | 0.559566 | tig0034892:+13386 | Msa1453760:CDS |
| GGGTCATCGTGTTTCTAAGA+CGG | 0.562157 | tig0034892:+13310 | Msa1453760:intron |
| TGGACATACATCCTGCAGTC+CGG | 0.563232 | tig0034892:+15111 | Msa1453760:CDS |
| AGGAGGTTCTCATGCACAGA+AGG | 0.564528 | tig0034892:+13379 | Msa1453760:CDS |
| GTTTGATTCACAAGCTCACA+GGG | 0.567830 | tig0034892:+12366 | Msa1453760:CDS |
| GTTCCCTCCTTTGTCTGATG+AGG | 0.567933 | tig0034892:+13520 | Msa1453760:CDS |
| GAATCACTAACATGGGTCCG+TGG | 0.568732 | tig0034892:+14412 | Msa1453760:CDS |
| TTTACTATGGTCATACTTGG+GGG | 0.574839 | tig0034892:+13440 | Msa1453760:CDS |
| ATCGCTGCCTCAGGTTGTCA+AGG | 0.575597 | tig0034892:+15447 | Msa1453760:CDS |
| GTAAAACAAACATAAGTCCA+AGG | 0.594062 | tig0034892:-14045 | Msa1453760:intergenic |
| AGAAATGGGTGGAAGTGGAA+GGG | 0.595145 | tig0034892:-12463 | Msa1453760:intergenic |
| TATGTTACTGCTTAATCACA+CGG | 0.599610 | tig0034892:+15396 | Msa1453760:CDS |
| TAGTTTGCCTTGACAACCTG+AGG | 0.605573 | tig0034892:-15454 | Msa1453760:intergenic |
| GGCTGGTGGATGGTTAAAAG+TGG | 0.606546 | tig0034892:+14163 | Msa1453760:CDS |
| GCAGTCCGGTCTGTGATCGG+AGG | 0.609023 | tig0034892:+15125 | Msa1453760:CDS |
| CATGTTAGTGATTCAGCCGG+TGG | 0.609054 | tig0034892:-14403 | Msa1453760:intergenic |
| AACAGGTACATATGAGAGAA+GGG | 0.611039 | tig0034892:-15326 | Msa1453760:intergenic |
| GATTTGAGAAGTGCCGAGGA+TGG | 0.611196 | tig0034892:-15427 | Msa1453760:intergenic |
| TTCTAAGACGGTGTCTGCTG+GGG | 0.611493 | tig0034892:+13322 | Msa1453760:CDS |
| GATCGGAGGCATCTTTGGCA+TGG | 0.616105 | tig0034892:+15139 | Msa1453760:CDS |
| AGATGCCTCCGATCACAGAC+CGG | 0.616679 | tig0034892:-15130 | Msa1453760:intergenic |
| ACCCATGTTAGTGATTCAGC+CGG | 0.619631 | tig0034892:-14406 | Msa1453760:intergenic |
| ACGCCTCATCAGACAAAGGA+GGG | 0.621078 | tig0034892:-13523 | Msa1453760:intergenic |
| ACTGCAATCTCTTTGAGCTG+AGG | 0.621370 | tig0034892:-11963 | Msa1453760:intergenic |
| TCTTTACTTTAGCAGCCCCA+CGG | 0.622740 | tig0034892:-14429 | Msa1453760:intergenic |
| GAGTATGGACATCGTATGTG+GGG | 0.623390 | tig0034892:+14016 | Msa1453760:CDS |
| TGCTGGGGCCATACATAACG+AGG | 0.625400 | tig0034892:+13337 | Msa1453760:CDS |
| AGGTTCTCATGCACAGAAGG+TGG | 0.627630 | tig0034892:+13382 | Msa1453760:CDS |
| AGCAGTCGCCTGAATACAAG+CGG | 0.633913 | tig0034892:+13570 | Msa1453760:CDS |
| ACAAGAAGAAAAGAACGAAG+AGG | 0.639298 | tig0034892:-12077 | Msa1453760:intergenic |
| ACCGGCTGAATCACTAACAT+GGG | 0.639359 | tig0034892:+14405 | Msa1453760:CDS |
| TTGAAACTGCTCGTGACAGG+AGG | 0.640175 | tig0034892:+13362 | Msa1453760:CDS |
| AGACCAACGAGTAAGCTGAC+AGG | 0.646512 | tig0034892:-14463 | Msa1453760:intergenic |
| TAAAACAAACATAAGTCCAA+GGG | 0.647579 | tig0034892:-14044 | Msa1453760:intergenic |
| CAGCGATTTGAGAAGTGCCG+AGG | 0.653773 | tig0034892:-15431 | Msa1453760:intergenic |
| TCAGCATTTGCTATTTACTG+CGG | 0.654834 | tig0034892:+14343 | Msa1453760:CDS |
| CACGCCTCATCAGACAAAGG+AGG | 0.657857 | tig0034892:-13524 | Msa1453760:intergenic |
| GAGAAGGGTCGTAATTCCCA+AGG | 0.663918 | tig0034892:-15311 | Msa1453760:intergenic |
| GAAAGGAATTGTGGGCGTAG+CGG | 0.668134 | tig0034892:-12396 | Msa1453760:intergenic |
| CTGGGGCCATACATAACGAG+GGG | 0.678781 | tig0034892:+13339 | Msa1453760:CDS |
| ATCACTAACATGGGTCCGTG+GGG | 0.679851 | tig0034892:+14414 | Msa1453760:CDS |
| GCTGGGGCCATACATAACGA+GGG | 0.687361 | tig0034892:+13338 | Msa1453760:CDS |
| GAAAGTACGAAAGAAATGGG+TGG | 0.699602 | tig0034892:-12474 | Msa1453760:intergenic |
| AACCACGCCTCATCAGACAA+AGG | 0.710528 | tig0034892:-13527 | Msa1453760:intergenic |
| AGTATGGACATCGTATGTGG+GGG | 0.718998 | tig0034892:+14017 | Msa1453760:CDS |
| AAATAGCAAATGCTGATGTG+AGG | 0.721510 | tig0034892:-14336 | Msa1453760:intergenic |
| TGATTCACAAGCTCACAGGG+AGG | 0.754269 | tig0034892:+12369 | Msa1453760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATTAATAAGATAAAA+TGG | + | tig0034892:13662-13681 | Msa1453760:intron | 10.0% |
| !! | AAGAAAAAAAAAAGATAAAA+TGG | + | tig0034892:13693-13712 | Msa1453760:intron | 10.0% |
| !!! | TACATTTATTTTTGTAATTA+TGG | + | tig0034892:14873-14892 | Msa1453760:intron | 10.0% |
| !!! | AAATTTTCATTCTTTTTATG+TGG | + | tig0034892:12180-12199 | Msa1453760:intron | 15.0% |
| !!! | AATTTTCATTCTTTTTATGT+GGG | + | tig0034892:12181-12200 | Msa1453760:intron | 15.0% |
| !! | TTGATTTATAATTACAATTG+TGG | + | tig0034892:12808-12827 | Msa1453760:intron | 15.0% |
| !! | TGATTTATAATTACAATTGT+GGG | + | tig0034892:12809-12828 | Msa1453760:intron | 15.0% |
| !!! | TTTTAAACAACAAAGATTTA+CGG | + | tig0034892:12834-12853 | Msa1453760:intron | 15.0% |
| !!! | ATCAAATTGATTTACATATT+TGG | + | tig0034892:13726-13745 | Msa1453760:intron | 15.0% |
| !! | GTATTTATTATGAAAATCAA+AGG | + | tig0034892:13886-13905 | Msa1453760:intron | 15.0% |
| !! | TTATGAAGAAAATATGAATA+CGG | - | tig0034892:14070-14089 | Msa1453760:intergenic | 15.0% |
| !!! | TATTCATATTTTCTTCATAA+AGG | + | tig0034892:14070-14089 | Msa1453760:CDS | 15.0% |
| !!! | ATTCATATTTTCTTCATAAA+GGG | + | tig0034892:14071-14090 | Msa1453760:CDS | 15.0% |
| !! | ATTACAAGTACAAATAAAAT+AGG | - | tig0034892:14558-14577 | Msa1453760:intergenic | 15.0% |
| !! | CAAAAAAATTTAAGTAACAA+AGG | - | tig0034892:14941-14960 | Msa1453760:intergenic | 15.0% |
| !!! | AATTTTTTTGAAACTTAAAC+TGG | + | tig0034892:14951-14970 | Msa1453760:intron | 15.0% |
| !! | TAACAATATTTAACGATAAA+TGG | - | tig0034892:15212-15231 | Msa1453760:intergenic | 15.0% |
| !! | ATTTATCGTTAAATATTGTT+AGG | + | tig0034892:15211-15230 | Msa1453760:intron | 15.0% |
| !! | GAATAATGATTAATATTGTT+GGG | + | tig0034892:15247-15266 | Msa1453760:intron | 15.0% |
| !! | TACAAACGAAATAAAAAATT+CGG | - | tig0034892:15552-15571 | Msa1453760:intergenic | 15.0% |
| !!! | TGTAAAATTATACATTTTCA+AGG | + | tig0034892:15677-15696 | Msa1453760:three_prime_UTR | 15.0% |
| !! | AGAATGAAAATTTCAACAAA+GGG | - | tig0034892:12173-12192 | Msa1453760:intergenic | 20.0% |
| !! | AAGAATGAAAATTTCAACAA+AGG | - | tig0034892:12174-12193 | Msa1453760:intergenic | 20.0% |
| !! | ATGAACATTGAAAACATAAA+GGG | - | tig0034892:12710-12729 | Msa1453760:intergenic | 20.0% |
| !! | TGAATGTTTAGTATGTATAT+TGG | + | tig0034892:13247-13266 | Msa1453760:intron | 20.0% |
| !!! | AACTTGTTGATTTACATTTT+TGG | + | tig0034892:13780-13799 | Msa1453760:intron | 20.0% |
| !!! | AAGAATTCAAGTTCATATAT+TGG | + | tig0034892:13990-14009 | Msa1453760:CDS | 20.0% |
| !! | TTTATGTTGTTAAATTTCCA+CGG | - | tig0034892:14994-15013 | Msa1453760:intergenic | 20.0% |
| !! | GGAATAATGATTAATATTGT+TGG | + | tig0034892:15246-15265 | Msa1453760:intron | 20.0% |
| ! | GAATGAAAATTTCAACAAAG+GGG | - | tig0034892:12172-12191 | Msa1453760:intergenic | 25.0% |
| ! | AAGTACCTTAGGAATATTAT+GGG | - | tig0034892:12504-12523 | Msa1453760:intergenic | 25.0% |
| !! | AAAGTACCTTAGGAATATTA+TGG | - | tig0034892:12505-12524 | Msa1453760:intergenic | 25.0% |
| !!! | AGAATATAAGAAAGTACCTT+AGG | - | tig0034892:12515-12534 | Msa1453760:intergenic | 25.0% |
| !!! | TTCAATTAGTGGATTTAGAT+GGG | + | tig0034892:12654-12673 | Msa1453760:intron | 25.0% |
| ! | GATGAACATTGAAAACATAA+AGG | - | tig0034892:12711-12730 | Msa1453760:intergenic | 25.0% |
| ! | GAATTCCTAGATTACAAAAT+GGG | - | tig0034892:12970-12989 | Msa1453760:intergenic | 25.0% |
| ! | TGAATTCCTAGATTACAAAA+TGG | - | tig0034892:12971-12990 | Msa1453760:intergenic | 25.0% |
| ! | AATTCAAAAACTTGCAATCT+TGG | + | tig0034892:12985-13004 | Msa1453760:intron | 25.0% |
| ! | ATTCAAAAACTTGCAATCTT+GGG | + | tig0034892:12986-13005 | Msa1453760:intron | 25.0% |
| ! | TAAACATTCACACAAAACAT+TGG | - | tig0034892:13237-13256 | Msa1453760:intergenic | 25.0% |
| !! | ATTCAAGTTCATATATTGGA+TGG | + | tig0034892:13994-14013 | Msa1453760:CDS | 25.0% |
| ! | TAAAACAAACATAAGTCCAA+GGG | - | tig0034892:14047-14066 | Msa1453760:intergenic | 25.0% |
| ! | TACTTGTAATGATAATTGAG+TGG | + | tig0034892:14568-14587 | Msa1453760:intron | 25.0% |
| !! | ATTTAATACTTTTCCGAAGA+TGG | + | tig0034892:14646-14665 | Msa1453760:CDS | 25.0% |
| !! | TTTAATACTTTTCCGAAGAT+GGG | + | tig0034892:14647-14666 | Msa1453760:CDS | 25.0% |
| !! | TCATTTCAAGAATGTTTTCA+GGG | - | tig0034892:14685-14704 | Msa1453760:intergenic | 25.0% |
| !! | TTCATTTCAAGAATGTTTTC+AGG | - | tig0034892:14686-14705 | Msa1453760:intergenic | 25.0% |
| !!! | TGGTTGTCCTTTTATTTATT+CGG | + | tig0034892:14818-14837 | Msa1453760:intron | 25.0% |
| ! | GTACTTTCCGAATAAATAAA+AGG | - | tig0034892:14828-14847 | Msa1453760:intergenic | 25.0% |
| ! | AGTTGAGACTATTATTATTC+AGG | + | tig0034892:15486-15505 | Msa1453760:three_prime_UTR | 25.0% |
| ! | AACGAAATAAAAAATTCGGT+CGG | - | tig0034892:15548-15567 | Msa1453760:intergenic | 25.0% |
| !!! | ATTATACATTTTCAAGGAAG+AGG | + | tig0034892:15683-15702 | Msa1453760:three_prime_UTR | 25.0% |
| ! | TTTTCGCAAAACAAAACCTT+TGG | + | tig0034892:11934-11953 | Msa1453760:five_prime_UTR | 30.0% |
| TGGGTGGTGATAAATAAAAA+AGG | - | tig0034892:12144-12163 | Msa1453760:intergenic | 30.0% | |
| TTTCAACAAAGGGGTTAAAT+GGG | - | tig0034892:12163-12182 | Msa1453760:intergenic | 30.0% | |
| ATTTCAACAAAGGGGTTAAA+TGG | - | tig0034892:12164-12183 | Msa1453760:intergenic | 30.0% | |
| ! | ACTATTCCAAATTTTGTCAC+TGG | + | tig0034892:12283-12302 | Msa1453760:intron | 30.0% |
| ! | CTTGAATGATTGTTGTTGTA+TGG | - | tig0034892:12435-12454 | Msa1453760:intergenic | 30.0% |
| TTTGGGTAAGTAGTTGAATT+AGG | - | tig0034892:12604-12623 | Msa1453760:intergenic | 30.0% | |
| ! | GACATACATGATCAAGTTTT+GGG | - | tig0034892:12621-12640 | Msa1453760:intergenic | 30.0% |
| ! | TGACATACATGATCAAGTTT+TGG | - | tig0034892:12622-12641 | Msa1453760:intergenic | 30.0% |
| !! | CTTCAATTAGTGGATTTAGA+TGG | + | tig0034892:12653-12672 | Msa1453760:intron | 30.0% |
| ! | AAACATAAAGGGTATGGTAT+TGG | - | tig0034892:12699-12718 | Msa1453760:intergenic | 30.0% |
| CATTGAAAACATAAAGGGTA+TGG | - | tig0034892:12705-12724 | Msa1453760:intergenic | 30.0% | |
| TGATTCAATATGAGTCAAGT+AGG | + | tig0034892:12767-12786 | Msa1453760:intron | 30.0% | |
| AAACAACAAAGATTTACGGA+TGG | + | tig0034892:12838-12857 | Msa1453760:intron | 30.0% | |
| ATTTACGGATGGATATTATC+TGG | + | tig0034892:12849-12868 | Msa1453760:intron | 30.0% | |
| TTTCATCTGTGAAATGTCAA+TGG | + | tig0034892:13171-13190 | Msa1453760:intron | 30.0% | |
| !! | TGAAATGTCAATGGTGTTAT+GGG | + | tig0034892:13180-13199 | Msa1453760:intron | 30.0% |
| TGTTTACTATGGTCATACTT+GGG | + | tig0034892:13438-13457 | Msa1453760:CDS | 30.0% | |
| AATGACTGATTGGAAATTCA+CGG | + | tig0034892:13493-13512 | Msa1453760:CDS | 30.0% | |
| TTTATACAGTTCCAAAAAGC+TGG | - | tig0034892:13754-13773 | Msa1453760:intergenic | 30.0% | |
| ! | ACTTTTTGCAGTGTAAACAA+AGG | + | tig0034892:13956-13975 | Msa1453760:intron | 30.0% |
| TTCATATATTGGATGGAGTA+TGG | + | tig0034892:14001-14020 | Msa1453760:CDS | 30.0% | |
| GTAAAACAAACATAAGTCCA+AGG | - | tig0034892:14048-14067 | Msa1453760:intergenic | 30.0% | |
| GAAACTATGGTATTAGAATC+TGG | - | tig0034892:14250-14269 | Msa1453760:intergenic | 30.0% | |
| TGTAATGATAATTGAGTGGT+TGG | + | tig0034892:14572-14591 | Msa1453760:intron | 30.0% | |
| TCAAAGAAATTTCGAATCAG+AGG | - | tig0034892:14710-14729 | Msa1453760:intergenic | 30.0% | |
| ! | TTGTTTCTTGAATTGTGATC+TGG | + | tig0034892:14798-14817 | Msa1453760:intron | 30.0% |
| !!! | TTCGGAAAGTACTTTTTTGA+AGG | + | tig0034892:14836-14855 | Msa1453760:intron | 30.0% |
| ! | TTTTCTTGTTGACAACCATA+AGG | - | tig0034892:15090-15109 | Msa1453760:intergenic | 30.0% |
| TCATATGTACCTGTTTCATT+GGG | + | tig0034892:15334-15353 | Msa1453760:CDS | 30.0% | |
| TATGTTACTGCTTAATCACA+CGG | + | tig0034892:15396-15415 | Msa1453760:CDS | 30.0% | |
| TCATATCAATTGCATCATCA+TGG | - | tig0034892:15593-15612 | Msa1453760:intergenic | 30.0% | |
| CTGTCGAATATTATTGATGA+TGG | + | tig0034892:15748-15767 | Msa1453760:three_prime_UTR | 30.0% | |
| ACAAGAAGAAAAGAACGAAG+AGG | - | tig0034892:12080-12099 | Msa1453760:intergenic | 35.0% | |
| ! | TCATTCTTTTTATGTGGGCA+TGG | + | tig0034892:12186-12205 | Msa1453760:intron | 35.0% |
| TGGTGGAGAGATAAAATGTT+TGG | + | tig0034892:12311-12330 | Msa1453760:exon | 35.0% | |
| GGTGGAGAGATAAAATGTTT+GGG | + | tig0034892:12312-12331 | Msa1453760:exon | 35.0% | |
| !!! | AGCAATTTTAAAACGCAGCA+AGG | + | tig0034892:12337-12356 | Msa1453760:CDS | 35.0% |
| ! | GATTGTTGTTGTATGGAAGA+AGG | - | tig0034892:12428-12447 | Msa1453760:intergenic | 35.0% |
| ! | TCGGAAAGTACGAAAGAAAT+GGG | - | tig0034892:12480-12499 | Msa1453760:intergenic | 35.0% |
| ! | ATCGGAAAGTACGAAAGAAA+TGG | - | tig0034892:12481-12500 | Msa1453760:intergenic | 35.0% |
| CCTTAGGAATATTATGGGAT+CGG | - | tig0034892:12499-12518 | Msa1453760:intergenic | 35.0% | |
| GCAATCTACGTGTTATCAAA+TGG | + | tig0034892:12744-12763 | Msa1453760:intron | 35.0% | |
| ! | CATGTCCCATTTTGTAATCT+AGG | + | tig0034892:12962-12981 | Msa1453760:intron | 35.0% |
| TTGATGTTGGCAAATAACAG+AGG | + | tig0034892:13011-13030 | Msa1453760:intron | 35.0% | |
| ! | GTGAAATGTCAATGGTGTTA+TGG | + | tig0034892:13179-13198 | Msa1453760:intron | 35.0% |
| GTGTTTACTATGGTCATACT+TGG | + | tig0034892:13437-13456 | Msa1453760:CDS | 35.0% | |
| GTTTACTATGGTCATACTTG+GGG | + | tig0034892:13439-13458 | Msa1453760:CDS | 35.0% | |
| TTTACTATGGTCATACTTGG+GGG | + | tig0034892:13440-13459 | Msa1453760:CDS | 35.0% | |
| ATGACTGATTGGAAATTCAC+GGG | + | tig0034892:13494-13513 | Msa1453760:CDS | 35.0% | |
| ! | ACAATCAGATGATTTTGCTC+AGG | - | tig0034892:13618-13637 | Msa1453760:intergenic | 35.0% |
| !! | CATATTTGGAACCAGCTTTT+TGG | + | tig0034892:13740-13759 | Msa1453760:intron | 35.0% |
| !! | CATTTTTGGAAACAGCTTTC+TGG | + | tig0034892:13794-13813 | Msa1453760:intron | 35.0% |
| ! | CTAAGAGTTTCTGCTTTGTT+TGG | + | tig0034892:14115-14134 | Msa1453760:CDS | 35.0% |
| GATGGTTAAAAGTGGTTTAG+AGG | + | tig0034892:14171-14190 | Msa1453760:CDS | 35.0% | |
| GTTAAAAGTGGTTTAGAGGT+TGG | + | tig0034892:14175-14194 | Msa1453760:intron | 35.0% | |
| GTATTAGAATCTGGATGAGT+TGG | - | tig0034892:14241-14260 | Msa1453760:intergenic | 35.0% | |
| ! | TACCATAGTTTCTTTTCCTC+AGG | + | tig0034892:14258-14277 | Msa1453760:intron | 35.0% |
| TTCCTGAGGAAAAGAAACTA+TGG | - | tig0034892:14263-14282 | Msa1453760:intergenic | 35.0% | |
| AAATAGCAAATGCTGATGTG+AGG | - | tig0034892:14339-14358 | Msa1453760:intergenic | 35.0% | |
| !! | TCAGCATTTGCTATTTACTG+CGG | + | tig0034892:14343-14362 | Msa1453760:CDS | 35.0% |
| ! | TGCTTACATGTTGATTGTCA+GGG | + | tig0034892:14617-14636 | Msa1453760:intron | 35.0% |
| GTTGTTAAATTTCCACGGAT+AGG | - | tig0034892:14989-15008 | Msa1453760:intergenic | 35.0% | |
| !!! | TGTTTTAACAGCTCAATCAC+CGG | + | tig0034892:15030-15049 | Msa1453760:intron | 35.0% |
| ! | TAAGGCACTCACTGAAATTA+GGG | - | tig0034892:15072-15091 | Msa1453760:intergenic | 35.0% |
| ! | ATAAGGCACTCACTGAAATT+AGG | - | tig0034892:15073-15092 | Msa1453760:intergenic | 35.0% |
| TAATTTCAGTGAGTGCCTTA+TGG | + | tig0034892:15072-15091 | Msa1453760:CDS | 35.0% | |
| ATGGTTGTCAACAAGAAAAC+TGG | + | tig0034892:15091-15110 | Msa1453760:CDS | 35.0% | |
| TAATCATTATTCCGCTCAGA+AGG | - | tig0034892:15239-15258 | Msa1453760:intergenic | 35.0% | |
| GATGCTTTACATGATGTACT+TGG | + | tig0034892:15269-15288 | Msa1453760:intron | 35.0% | |
| !! | CATGATGTACTTGGTTTGTT+TGG | + | tig0034892:15278-15297 | Msa1453760:intron | 35.0% |
| !! | TACTTGGTTTGTTTGGTTAC+AGG | + | tig0034892:15285-15304 | Msa1453760:intron | 35.0% |
| AACAGGTACATATGAGAGAA+GGG | - | tig0034892:15329-15348 | Msa1453760:intergenic | 35.0% | |
| AAACAGGTACATATGAGAGA+AGG | - | tig0034892:15330-15349 | Msa1453760:intergenic | 35.0% | |
| CTCATATGTACCTGTTTCAT+TGG | + | tig0034892:15333-15352 | Msa1453760:CDS | 35.0% | |
| GAAATAAAAAATTCGGTCGG+TGG | - | tig0034892:15545-15564 | Msa1453760:intergenic | 35.0% | |
| ! | TGCATCATCATGGATTTTCA+CGG | - | tig0034892:15583-15602 | Msa1453760:intergenic | 35.0% |
| ACACTGCCAGTGACAAAATT+TGG | - | tig0034892:12292-12311 | Msa1453760:intergenic | 40.0% | |
| ! | AAATTTTGTCACTGGCAGTG+TGG | + | tig0034892:12291-12310 | Msa1453760:intron | 40.0% |
| TGTTTGATTCACAAGCTCAC+AGG | + | tig0034892:12365-12384 | Msa1453760:CDS | 40.0% | |
| GTTTGATTCACAAGCTCACA+GGG | + | tig0034892:12366-12385 | Msa1453760:CDS | 40.0% | |
| GGATGAGAGAAAGGAATTGT+GGG | - | tig0034892:12407-12426 | Msa1453760:intergenic | 40.0% | |
| AGGATGAGAGAAAGGAATTG+TGG | - | tig0034892:12408-12427 | Msa1453760:intergenic | 40.0% | |
| ATGGAAGAAGGATGAGAGAA+AGG | - | tig0034892:12416-12435 | Msa1453760:intergenic | 40.0% | |
| ! | GAAAGTACGAAAGAAATGGG+TGG | - | tig0034892:12477-12496 | Msa1453760:intergenic | 40.0% |
| CCGATCCCATAATATTCCTA+AGG | + | tig0034892:12496-12515 | Msa1453760:CDS | 40.0% | |
| CAGAGAGATGCTTCAATTAG+TGG | + | tig0034892:12643-12662 | Msa1453760:intron | 40.0% | |
| ! | TAAGTGCTGCTGTTGCAATT+GGG | + | tig0034892:12905-12924 | Msa1453760:intron | 40.0% |
| GCAATCTTGGGATTTGATGT+TGG | + | tig0034892:12998-13017 | Msa1453760:intron | 40.0% | |
| ! | GACTTCTGAGAAAACTGTTG+TGG | + | tig0034892:13279-13298 | Msa1453760:intron | 40.0% |
| AAAACTGTTGTGGTGCTCTT+AGG | + | tig0034892:13289-13308 | Msa1453760:intron | 40.0% | |
| AAACTGTTGTGGTGCTCTTA+GGG | + | tig0034892:13290-13309 | Msa1453760:intron | 40.0% | |
| TTTCAACCCCTCGTTATGTA+TGG | - | tig0034892:13348-13367 | Msa1453760:intergenic | 40.0% | |
| AGTCATTGAAAGACCAGATC+TGG | - | tig0034892:13480-13499 | Msa1453760:intergenic | 40.0% | |
| ! | CTGGTCTTTCAATGACTGAT+TGG | + | tig0034892:13483-13502 | Msa1453760:CDS | 40.0% |
| TCACTTTACCGCTTGTATTC+AGG | - | tig0034892:13581-13600 | Msa1453760:intergenic | 40.0% | |
| !! | ATCTGGATGAGTTGGTCAAT+TGG | - | tig0034892:14233-14252 | Msa1453760:intergenic | 40.0% |
| CTTGGCTGAGAATATTCAGT+TGG | - | tig0034892:14289-14308 | Msa1453760:intergenic | 40.0% | |
| ! | CTATTTACTGCGGTCTCTTT+TGG | + | tig0034892:14353-14372 | Msa1453760:CDS | 40.0% |
| ! | TGATAATTGAGTGGTTGGTG+AGG | + | tig0034892:14577-14596 | Msa1453760:intron | 40.0% |
| ! | CTGCTTACATGTTGATTGTC+AGG | + | tig0034892:14616-14635 | Msa1453760:intron | 40.0% |
| ! | GCTTACATGTTGATTGTCAG+GGG | + | tig0034892:14618-14637 | Msa1453760:intron | 40.0% |
| ATCCATGTATCACCCATCTT+CGG | - | tig0034892:14662-14681 | Msa1453760:intergenic | 40.0% | |
| ! | TGAGAATACATCGACTGTAC+AGG | + | tig0034892:14727-14746 | Msa1453760:CDS | 40.0% |
| ATTTCCACGGATAGGCAAAA+TGG | - | tig0034892:14981-15000 | Msa1453760:intergenic | 40.0% | |
| AAATTAGGGTTGCAGTTGCA+AGG | - | tig0034892:15058-15077 | Msa1453760:intergenic | 40.0% | |
| ATTGTTAGGATCCTTCTGAG+CGG | + | tig0034892:15225-15244 | Msa1453760:intron | 40.0% | |
| ! | CTAGAATGGCTGGTTGTTTA+AGG | + | tig0034892:15709-15728 | Msa1453760:three_prime_UTR | 40.0% |
| TGAGCTGAGGGTTTAACCAA+AGG | - | tig0034892:11953-11972 | Msa1453760:intergenic | 45.0% | |
| CTGCAATCTCTTTGAGCTGA+GGG | - | tig0034892:11965-11984 | Msa1453760:intergenic | 45.0% | |
| ACTGCAATCTCTTTGAGCTG+AGG | - | tig0034892:11966-11985 | Msa1453760:intergenic | 45.0% | |
| CTGTATCAAAAAGCCAGTGG+CGG | - | tig0034892:12043-12062 | Msa1453760:intergenic | 45.0% | |
| AGCCTGTATCAAAAAGCCAG+TGG | - | tig0034892:12046-12065 | Msa1453760:intergenic | 45.0% | |
| CAACAAAGGGGTTAAATGGG+TGG | - | tig0034892:12160-12179 | Msa1453760:intergenic | 45.0% | |
| AGAAATGGGTGGAAGTGGAA+GGG | - | tig0034892:12466-12485 | Msa1453760:intergenic | 45.0% | |
| AAGAAATGGGTGGAAGTGGA+AGG | - | tig0034892:12467-12486 | Msa1453760:intergenic | 45.0% | |
| ACGAAAGAAATGGGTGGAAG+TGG | - | tig0034892:12471-12490 | Msa1453760:intergenic | 45.0% | |
| ! | GTAAGTGCTGCTGTTGCAAT+TGG | + | tig0034892:12904-12923 | Msa1453760:intron | 45.0% |
| ! | GGGTCATCGTGTTTCTAAGA+CGG | + | tig0034892:13310-13329 | Msa1453760:intron | 45.0% |
| !! | TTTCTAAGACGGTGTCTGCT+GGG | + | tig0034892:13321-13340 | Msa1453760:CDS | 45.0% |
| CACAGAAGGTGGTTGGAATA+TGG | + | tig0034892:13393-13412 | Msa1453760:CDS | 45.0% | |
| GTGGTTGGAATATGGCTCTT+CGG | + | tig0034892:13401-13420 | Msa1453760:CDS | 45.0% | |
| TGCTGCATGGGTGTTTACTA+TGG | + | tig0034892:13427-13446 | Msa1453760:CDS | 45.0% | |
| TTAACCAGACTCACCAGATC+TGG | + | tig0034892:13464-13483 | Msa1453760:CDS | 45.0% | |
| !! | AGCTTTCTGGAACTGTGCAA+AGG | + | tig0034892:13807-13826 | Msa1453760:intron | 45.0% |
| TGGAGTATGGACATCGTATG+TGG | + | tig0034892:14014-14033 | Msa1453760:CDS | 45.0% | |
| GGAGTATGGACATCGTATGT+GGG | + | tig0034892:14015-14034 | Msa1453760:CDS | 45.0% | |
| GAGTATGGACATCGTATGTG+GGG | + | tig0034892:14016-14035 | Msa1453760:CDS | 45.0% | |
| AGTATGGACATCGTATGTGG+GGG | + | tig0034892:14017-14036 | Msa1453760:CDS | 45.0% | |
| !! | AGTTTCTGCTTTGTTTGGCC+TGG | + | tig0034892:14120-14139 | Msa1453760:CDS | 45.0% |
| !! | GTTTCTGCTTTGTTTGGCCT+GGG | + | tig0034892:14121-14140 | Msa1453760:CDS | 45.0% |
| !! | TATTCAGTTGGTGGTTCCTG+AGG | - | tig0034892:14277-14296 | Msa1453760:intergenic | 45.0% |
| GGCTGAGAATATTCAGTTGG+TGG | - | tig0034892:14286-14305 | Msa1453760:intergenic | 45.0% | |
| AGACGATAAGGGCTTACTCT+TGG | - | tig0034892:14307-14326 | Msa1453760:intergenic | 45.0% | |
| ACCGGCTGAATCACTAACAT+GGG | + | tig0034892:14405-14424 | Msa1453760:CDS | 45.0% | |
| ACCCATGTTAGTGATTCAGC+CGG | - | tig0034892:14409-14428 | Msa1453760:intergenic | 45.0% | |
| AATCACTAACATGGGTCCGT+GGG | + | tig0034892:14413-14432 | Msa1453760:CDS | 45.0% | |
| TCTTTACTTTAGCAGCCCCA+CGG | - | tig0034892:14432-14451 | Msa1453760:intergenic | 45.0% | |
| TTCCGAAGATGGGTGATACA+TGG | + | tig0034892:14657-14676 | Msa1453760:CDS | 45.0% | |
| TGTTTGGTTACAGGTCACCT+TGG | + | tig0034892:15294-15313 | Msa1453760:intron | 45.0% | |
| GTTTGGTTACAGGTCACCTT+GGG | + | tig0034892:15295-15314 | Msa1453760:intron | 45.0% | |
| TGTGCAGTACCCAATGAAAC+AGG | - | tig0034892:15346-15365 | Msa1453760:intergenic | 45.0% | |
| TGCTTAATCACACGGTTCGA+AGG | + | tig0034892:15404-15423 | Msa1453760:CDS | 45.0% | |
| ! | TAGTTTGCCTTGACAACCTG+AGG | - | tig0034892:15457-15476 | Msa1453760:intergenic | 45.0% |
| AAATTCGGTCGGTGGACAAT+TGG | - | tig0034892:15537-15556 | Msa1453760:intergenic | 45.0% | |
| CAAGGAAGAGGAGTCTAGAA+TGG | + | tig0034892:15695-15714 | Msa1453760:three_prime_UTR | 45.0% | |
| TATCAAAAAGCCAGTGGCGG+TGG | - | tig0034892:12040-12059 | Msa1453760:intergenic | 50.0% | |
| !!! | CGCCACTGGCTTTTTGATAC+AGG | + | tig0034892:12041-12060 | Msa1453760:five_prime_UTR | 50.0% |
| ! | TTTTGTCACTGGCAGTGTGG+TGG | + | tig0034892:12294-12313 | Msa1453760:intron | 50.0% |
| TGATTCACAAGCTCACAGGG+AGG | + | tig0034892:12369-12388 | Msa1453760:CDS | 50.0% | |
| GAAAGGAATTGTGGGCGTAG+CGG | - | tig0034892:12399-12418 | Msa1453760:intergenic | 50.0% | |
| !! | GTTTCTAAGACGGTGTCTGC+TGG | + | tig0034892:13320-13339 | Msa1453760:CDS | 50.0% |
| !! | TTCTAAGACGGTGTCTGCTG+GGG | + | tig0034892:13322-13341 | Msa1453760:CDS | 50.0% |
| TTGAAACTGCTCGTGACAGG+AGG | + | tig0034892:13362-13381 | Msa1453760:CDS | 50.0% | |
| AGGAGGTTCTCATGCACAGA+AGG | + | tig0034892:13379-13398 | Msa1453760:CDS | 50.0% | |
| AGGTTCTCATGCACAGAAGG+TGG | + | tig0034892:13382-13401 | Msa1453760:CDS | 50.0% | |
| TCTCATGCACAGAAGGTGGT+TGG | + | tig0034892:13386-13405 | Msa1453760:CDS | 50.0% | |
| AAGACCAGATCTGGTGAGTC+TGG | - | tig0034892:13471-13490 | Msa1453760:intergenic | 50.0% | |
| GTTCCCTCCTTTGTCTGATG+AGG | + | tig0034892:13520-13539 | Msa1453760:CDS | 50.0% | |
| ACGCCTCATCAGACAAAGGA+GGG | - | tig0034892:13526-13545 | Msa1453760:intergenic | 50.0% | |
| AACCACGCCTCATCAGACAA+AGG | - | tig0034892:13530-13549 | Msa1453760:intergenic | 50.0% | |
| AGCAGTCGCCTGAATACAAG+CGG | + | tig0034892:13570-13589 | Msa1453760:CDS | 50.0% | |
| ! | GGCTGGTGGATGGTTAAAAG+TGG | + | tig0034892:14163-14182 | Msa1453760:CDS | 50.0% |
| TGTTGTTATGCCTGAGCCAC+CGG | + | tig0034892:14387-14406 | Msa1453760:CDS | 50.0% | |
| CATGTTAGTGATTCAGCCGG+TGG | - | tig0034892:14406-14425 | Msa1453760:intergenic | 50.0% | |
| ! | CACCGGCTGAATCACTAACA+TGG | + | tig0034892:14404-14423 | Msa1453760:CDS | 50.0% |
| GAATCACTAACATGGGTCCG+TGG | + | tig0034892:14412-14431 | Msa1453760:CDS | 50.0% | |
| ATCACTAACATGGGTCCGTG+GGG | + | tig0034892:14414-14433 | Msa1453760:CDS | 50.0% | |
| TTGCCTGTCAGCTTACTCGT+TGG | + | tig0034892:14460-14479 | Msa1453760:CDS | 50.0% | |
| AGACCAACGAGTAAGCTGAC+AGG | - | tig0034892:14466-14485 | Msa1453760:intergenic | 50.0% | |
| !! | GTTGGTCTTACTGCTGTCTC+TGG | + | tig0034892:14478-14497 | Msa1453760:CDS | 50.0% |
| ! | GTCTCTGGTGCATTTGTTGC+AGG | + | tig0034892:14493-14512 | Msa1453760:CDS | 50.0% |
| TCCACGGATAGGCAAAATGG+CGG | - | tig0034892:14978-14997 | Msa1453760:intergenic | 50.0% | |
| TGGACATACATCCTGCAGTC+CGG | + | tig0034892:15111-15130 | Msa1453760:CDS | 50.0% | |
| !! | TCTGTGATCGGAGGCATCTT+TGG | + | tig0034892:15134-15153 | Msa1453760:CDS | 50.0% |
| CTTTGGCATGGCATCTGTTC+AGG | + | tig0034892:15151-15170 | Msa1453760:CDS | 50.0% | |
| GAGAAGGGTCGTAATTCCCA+AGG | - | tig0034892:15314-15333 | Msa1453760:intergenic | 50.0% | |
| ! | TTGGGTACTGCACATCAAGC+TGG | + | tig0034892:15352-15371 | Msa1453760:CDS | 50.0% |
| !! | GATTTGAGAAGTGCCGAGGA+TGG | - | tig0034892:15430-15449 | Msa1453760:intergenic | 50.0% |
| ACTTCTCAAATCGCTGCCTC+AGG | + | tig0034892:15438-15457 | Msa1453760:CDS | 50.0% | |
| ! | GAAGAGGAGTCTAGAATGGC+TGG | + | tig0034892:15699-15718 | Msa1453760:three_prime_UTR | 50.0% |
| TGCTGGGGCCATACATAACG+AGG | + | tig0034892:13337-13356 | Msa1453760:CDS | 55.0% | |
| GCTGGGGCCATACATAACGA+GGG | + | tig0034892:13338-13357 | Msa1453760:CDS | 55.0% | |
| CTGGGGCCATACATAACGAG+GGG | + | tig0034892:13339-13358 | Msa1453760:CDS | 55.0% | |
| GGGTTGAAACTGCTCGTGAC+AGG | + | tig0034892:13359-13378 | Msa1453760:CDS | 55.0% | |
| CACGCCTCATCAGACAAAGG+AGG | - | tig0034892:13527-13546 | Msa1453760:intergenic | 55.0% | |
| CTCCTTTGTCTGATGAGGCG+TGG | + | tig0034892:13525-13544 | Msa1453760:CDS | 55.0% | |
| ATGGACATCGTATGTGGGGG+AGG | + | tig0034892:14020-14039 | Msa1453760:CDS | 55.0% | |
| TGGACATCGTATGTGGGGGA+GGG | + | tig0034892:14021-14040 | Msa1453760:CDS | 55.0% | |
| GGTGAGCTGCGAGACGATAA+GGG | - | tig0034892:14318-14337 | Msa1453760:intergenic | 55.0% | |
| AGGTGAGCTGCGAGACGATA+AGG | - | tig0034892:14319-14338 | Msa1453760:intergenic | 55.0% | |
| !! | ACCGCCATTTTGCCTATCCG+TGG | + | tig0034892:14974-14993 | Msa1453760:intron | 55.0% |
| GGGTTGCAGTTGCAAGGATC+CGG | - | tig0034892:15052-15071 | Msa1453760:intergenic | 55.0% | |
| AGATGCCTCCGATCACAGAC+CGG | - | tig0034892:15133-15152 | Msa1453760:intergenic | 55.0% | |
| !! | GATCGGAGGCATCTTTGGCA+TGG | + | tig0034892:15139-15158 | Msa1453760:CDS | 55.0% |
| !! | CAGCGATTTGAGAAGTGCCG+AGG | - | tig0034892:15434-15453 | Msa1453760:intergenic | 55.0% |
| ! | ATCGCTGCCTCAGGTTGTCA+AGG | + | tig0034892:15447-15466 | Msa1453760:CDS | 55.0% |
| CAAAAAGCCAGTGGCGGTGG+CGG | - | tig0034892:12037-12056 | Msa1453760:intergenic | 60.0% | |
| GCTCTTCGGCTCTGCTGCAT+GGG | + | tig0034892:13415-13434 | Msa1453760:CDS | 60.0% | |
| !! | GCTTTGTTTGGCCTGGGTGC+CGG | + | tig0034892:14127-14146 | Msa1453760:CDS | 60.0% |
| ! | CTTTGTTTGGCCTGGGTGCC+GGG | + | tig0034892:14128-14147 | Msa1453760:CDS | 60.0% |
| ! | GGGTCTCATTGGCTGGTGGA+TGG | + | tig0034892:14153-14172 | Msa1453760:CDS | 60.0% |
| AGTGATTCAGCCGGTGGCTC+AGG | - | tig0034892:14400-14419 | Msa1453760:intergenic | 60.0% | |
| CCTGCAGTCCGGTCTGTGAT+CGG | + | tig0034892:15122-15141 | Msa1453760:CDS | 60.0% | |
| CACGGTTCGAAGGCCATCCT+CGG | + | tig0034892:15414-15433 | Msa1453760:CDS | 60.0% | |
| GGCTCTTCGGCTCTGCTGCA+TGG | + | tig0034892:13414-13433 | Msa1453760:CDS | 65.0% | |
| CCAGCCAATGAGACCCTGCC+CGG | - | tig0034892:14149-14168 | Msa1453760:intergenic | 65.0% | |
| ! | GGCAGGGTCTCATTGGCTGG+TGG | + | tig0034892:14149-14168 | Msa1453760:CDS | 65.0% |
| CCGATCACAGACCGGACTGC+AGG | - | tig0034892:15125-15144 | Msa1453760:intergenic | 65.0% | |
| GCAGTCCGGTCTGTGATCGG+AGG | + | tig0034892:15125-15144 | Msa1453760:CDS | 65.0% | |
| GTGGCAGGGGAGGGGAGAAG+CGG | - | tig0034892:12008-12027 | Msa1453760:intergenic | 70.0% | |
| ! | AAAGCCAGTGGCGGTGGCGG+CGG | - | tig0034892:12034-12053 | Msa1453760:intergenic | 70.0% |
| CGTATGTGGGGGAGGGCCCT+TGG | + | tig0034892:14028-14047 | Msa1453760:CDS | 70.0% | |
| !! | TTTGGCCTGGGTGCCGGGCA+GGG | + | tig0034892:14133-14152 | Msa1453760:CDS | 70.0% |
| ! | GGTGCCGGGCAGGGTCTCAT+TGG | + | tig0034892:14142-14161 | Msa1453760:CDS | 70.0% |
| CCGGGCAGGGTCTCATTGGC+TGG | + | tig0034892:14146-14165 | Msa1453760:CDS | 70.0% | |
| !! | GTTTGGCCTGGGTGCCGGGC+AGG | + | tig0034892:14132-14151 | Msa1453760:CDS | 75.0% |
| TGAGACCCTGCCCGGCACCC+AGG | - | tig0034892:14141-14160 | Msa1453760:intergenic | 75.0% | |
| ! | GGCGGCGCGTGGCAGGGGAG+GGG | - | tig0034892:12016-12035 | Msa1453760:intergenic | 85.0% |
| ! | CGGCGGCGCGTGGCAGGGGA+GGG | - | tig0034892:12017-12036 | Msa1453760:intergenic | 85.0% |
| ! | GTGGCGGCGGCGCGTGGCAG+GGG | - | tig0034892:12021-12040 | Msa1453760:intergenic | 85.0% |
| !! | GGTGGCGGCGGCGCGTGGCA+GGG | - | tig0034892:12022-12041 | Msa1453760:intergenic | 85.0% |
| ! | GCGGCGGCGCGTGGCAGGGG+AGG | - | tig0034892:12018-12037 | Msa1453760:intergenic | 90.0% |
| !! | CGGTGGCGGCGGCGCGTGGC+AGG | - | tig0034892:12023-12042 | Msa1453760:intergenic | 90.0% |
| !! | GTGGCGGTGGCGGCGGCGCG+TGG | - | tig0034892:12027-12046 | Msa1453760:intergenic | 90.0% |
| ! | CGCGCCGCCGCCACCGCCAC+TGG | + | tig0034892:12027-12046 | Msa1453760:five_prime_UTR | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034892 | gene | 11926 | 15821 | 11926 | ID=Msa1453760;Name=Msa1453760 |
| tig0034892 | mRNA | 11926 | 15821 | 11926 | ID=Msa1453760-mRNA-1;Parent=Msa1453760;Name=Msa1453760-mRNA-1;_AED=0.12;_eAED=0.12;_QI=209|1|1|1|1|1|8|344|452 |
| tig0034892 | exon | 11926 | 12117 | 11926 | ID=Msa1453760-mRNA-1:exon:19305;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 12309 | 12517 | 12309 | ID=Msa1453760-mRNA-1:exon:19306;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 13311 | 13591 | 13311 | ID=Msa1453760-mRNA-1:exon:19307;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 13967 | 14192 | 13967 | ID=Msa1453760-mRNA-1:exon:19308;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 14280 | 14525 | 14280 | ID=Msa1453760-mRNA-1:exon:19309;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 14638 | 14748 | 14638 | ID=Msa1453760-mRNA-1:exon:19310;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 15041 | 15172 | 15041 | ID=Msa1453760-mRNA-1:exon:19311;Parent=Msa1453760-mRNA-1 |
| tig0034892 | exon | 15307 | 15821 | 15307 | ID=Msa1453760-mRNA-1:exon:19312;Parent=Msa1453760-mRNA-1 |
| tig0034892 | five_prime_UTR | 11926 | 12117 | 11926 | ID=Msa1453760-mRNA-1:five_prime_utr;Parent=Msa1453760-mRNA-1 |
| tig0034892 | five_prime_UTR | 12309 | 12325 | 12309 | ID=Msa1453760-mRNA-1:five_prime_utr;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 12326 | 12517 | 12326 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 13311 | 13591 | 13311 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 13967 | 14192 | 13967 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 14280 | 14525 | 14280 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 14638 | 14748 | 14638 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 15041 | 15172 | 15041 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | CDS | 15307 | 15477 | 15307 | ID=Msa1453760-mRNA-1:cds;Parent=Msa1453760-mRNA-1 |
| tig0034892 | three_prime_UTR | 15478 | 15821 | 15478 | ID=Msa1453760-mRNA-1:three_prime_utr;Parent=Msa1453760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
