Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519050 | AEO16611.1 | 100.000 | 392 | 0 | 0 | 1 | 392 | 1 | 392 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519050 | sp|O48559|UNI_PEA | 94.949 | 396 | 15 | 2 | 1 | 392 | 1 | 395 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519050 | G3FCS7 | 100.000 | 392 | 0 | 0 | 1 | 392 | 1 | 392 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0519050 | TF | LFY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0519050 | Msa0981400 | 0.902077 | 1.401254e-78 | -8.615850e-47 |
| Msa0519050 | Msa1352090 | 0.937696 | 2.275563e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519050 | MtrunA17_Chr3g0131591 | 99.745 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 0.0 | 811 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519050 | AT5G61850.1 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 3.10e-160 | 457 |
| Msa0519050 | AT5G61850.2 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 1.04e-157 | 451 |
Find 122 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 3_4:-70978609 | Msa0519050:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 3_4:-70979370 | Msa0519050:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 3_4:+70980335 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 3_4:-70979636 | Msa0519050:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 3_4:+70980326 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 3_4:-70978487 | Msa0519050:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 3_4:-70978730 | Msa0519050:CDS |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 3_4:-70979450 | Msa0519050:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 3_4:-70980127 | Msa0519050:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 3_4:-70979642 | Msa0519050:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 3_4:+70980379 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 3_4:-70980126 | Msa0519050:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | 3_4:-70979626 | Msa0519050:CDS |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 3_4:-70980071 | Msa0519050:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 3_4:+70979450 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 3_4:-70979639 | Msa0519050:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 3_4:+70980112 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 3_4:+70980314 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 3_4:-70979685 | Msa0519050:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 3_4:+70979432 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 3_4:+70978374 | None:intergenic |
| ATGGTATAGTATACCTTGGT+AGG | 0.452240 | 3_4:+70979312 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 3_4:-70979676 | Msa0519050:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 3_4:-70980323 | Msa0519050:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 3_4:-70979559 | Msa0519050:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 3_4:-70978602 | Msa0519050:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 3_4:+70980378 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 3_4:-70978410 | Msa0519050:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 3_4:-70978532 | Msa0519050:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 3_4:-70979578 | Msa0519050:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 3_4:-70979649 | Msa0519050:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 3_4:+70980432 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 3_4:+70979657 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 3_4:+70980353 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 3_4:-70979558 | Msa0519050:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 3_4:+70980043 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 3_4:-70978738 | Msa0519050:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 3_4:+70980452 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 3_4:+70980327 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 3_4:-70980084 | Msa0519050:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 3_4:-70980158 | Msa0519050:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 3_4:+70980282 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 3_4:-70978639 | Msa0519050:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 3_4:-70979517 | Msa0519050:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 3_4:+70980090 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 3_4:+70979341 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 3_4:+70980436 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 3_4:-70979557 | Msa0519050:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 3_4:-70980315 | Msa0519050:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 3_4:-70979635 | Msa0519050:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 3_4:-70979449 | Msa0519050:CDS |
| TTGGGAGGTAGCCGTGGTGG+AGG | 0.529312 | 3_4:-70979607 | Msa0519050:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 3_4:-70980146 | Msa0519050:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 3_4:-70979543 | Msa0519050:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 3_4:-70979520 | Msa0519050:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 3_4:-70979552 | Msa0519050:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 3_4:-70980312 | Msa0519050:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 3_4:+70980040 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 3_4:-70979658 | Msa0519050:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 3_4:+70980401 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 3_4:-70978583 | Msa0519050:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 3_4:+70980392 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 3_4:+70980409 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 3_4:-70980099 | Msa0519050:CDS |
| TACTTGGGAGGTAGCCGTGG+TGG | 0.568788 | 3_4:-70979610 | Msa0519050:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 3_4:+70978378 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 3_4:+70980416 | None:intergenic |
| GAAGATAACATCAGTGGTGG+GGG | 0.573896 | 3_4:-70979492 | Msa0519050:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.574442 | 3_4:-70979494 | Msa0519050:CDS |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 3_4:+70980451 | None:intergenic |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.579508 | 3_4:-70979613 | Msa0519050:CDS |
| AGAAGATAACATCAGTGGTG+GGG | 0.583595 | 3_4:-70979493 | Msa0519050:CDS |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 3_4:+70978542 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 3_4:-70979655 | Msa0519050:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 3_4:-70980254 | Msa0519050:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 3_4:-70978531 | Msa0519050:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 3_4:-70979352 | Msa0519050:CDS |
| TGGTGGAGGAGAGAAGAAAG+AGG | 0.595087 | 3_4:-70979593 | Msa0519050:CDS |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 3_4:+70980380 | None:intergenic |
| CTTTCTTCTCTCCTCCACCA+CGG | 0.599475 | 3_4:+70979596 | None:intergenic |
| GAAGAAGATAACATCAGTGG+TGG | 0.599484 | 3_4:-70979495 | Msa0519050:CDS |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 3_4:-70978617 | Msa0519050:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 3_4:-70979648 | Msa0519050:CDS |
| TGGTATAGTATACCTTGGTA+GGG | 0.608009 | 3_4:+70979313 | None:intergenic |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 3_4:-70979673 | Msa0519050:CDS |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 3_4:-70980442 | Msa0519050:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 3_4:+70980405 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 3_4:-70978445 | Msa0519050:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 3_4:-70979572 | Msa0519050:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 3_4:-70978616 | Msa0519050:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | 3_4:-70979622 | Msa0519050:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 3_4:-70980032 | Msa0519050:intron |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 3_4:+70980417 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 3_4:-70980340 | Msa0519050:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 3_4:-70979528 | Msa0519050:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | 3_4:-70979625 | Msa0519050:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 3_4:-70978536 | Msa0519050:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 3_4:+70980341 | None:intergenic |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.634743 | 3_4:+70978381 | None:intergenic |
| GTGGGCAGTTCCAACAGAGA+CGG | 0.635033 | 3_4:+70978400 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 3_4:-70980319 | Msa0519050:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 3_4:-70980085 | Msa0519050:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 3_4:-70980118 | Msa0519050:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 3_4:-70979325 | Msa0519050:intron |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 3_4:+70980389 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 3_4:-70980441 | Msa0519050:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 3_4:-70979345 | Msa0519050:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.652391 | 3_4:+70978382 | None:intergenic |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 3_4:-70980222 | Msa0519050:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 3_4:-70979448 | Msa0519050:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 3_4:-70979435 | Msa0519050:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 3_4:-70980320 | Msa0519050:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 3_4:-70979682 | Msa0519050:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 3_4:-70978590 | Msa0519050:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 3_4:+70980439 | None:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 3_4:+70980384 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 3_4:-70979498 | Msa0519050:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 3_4:-70979652 | Msa0519050:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 3_4:+70978482 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 3_4:-70980083 | Msa0519050:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 3_4:+70980066 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 3_4:-70980273 | Msa0519050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACAAATAAAAAATTGTT+AGG | + | chr3_4:70978969-70978988 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | - | chr3_4:70978975-70978994 | Msa0519050:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | - | chr3_4:70979153-70979172 | Msa0519050:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | + | chr3_4:70978969-70978988 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | - | chr3_4:70978975-70978994 | Msa0519050:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | - | chr3_4:70979153-70979172 | Msa0519050:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | + | chr3_4:70978845-70978864 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | - | chr3_4:70979866-70979885 | Msa0519050:intron | 15.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | + | chr3_4:70978845-70978864 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | - | chr3_4:70979866-70979885 | Msa0519050:intron | 15.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | + | chr3_4:70979119-70979138 | None:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | - | chr3_4:70979161-70979180 | Msa0519050:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | + | chr3_4:70979851-70979870 | None:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | + | chr3_4:70979965-70979984 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | + | chr3_4:70979966-70979985 | None:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | + | chr3_4:70979982-70980001 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | - | chr3_4:70980061-70980080 | Msa0519050:CDS | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | + | chr3_4:70979119-70979138 | None:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | - | chr3_4:70979161-70979180 | Msa0519050:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | + | chr3_4:70979851-70979870 | None:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | + | chr3_4:70979965-70979984 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | + | chr3_4:70979966-70979985 | None:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | + | chr3_4:70979982-70980001 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | - | chr3_4:70980061-70980080 | Msa0519050:CDS | 20.0% |
| ! | ACTTTGTAATGTTGTTAGTA+GGG | + | chr3_4:70979561-70979580 | None:intergenic | 25.0% |
| ! | AACTTTGTAATGTTGTTAGT+AGG | + | chr3_4:70979562-70979581 | None:intergenic | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | - | chr3_4:70979987-70980006 | Msa0519050:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | - | chr3_4:70979988-70980007 | Msa0519050:intron | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | - | chr3_4:70980096-70980115 | Msa0519050:CDS | 25.0% |
| ! | ACTTTGTAATGTTGTTAGTA+GGG | + | chr3_4:70979561-70979580 | None:intergenic | 25.0% |
| ! | AACTTTGTAATGTTGTTAGT+AGG | + | chr3_4:70979562-70979581 | None:intergenic | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | - | chr3_4:70979987-70980006 | Msa0519050:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | - | chr3_4:70979988-70980007 | Msa0519050:intron | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | - | chr3_4:70980096-70980115 | Msa0519050:CDS | 25.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | + | chr3_4:70978759-70978778 | None:intergenic | 30.0% |
| ! | ATGCATGCATGATTTTGTTA+TGG | + | chr3_4:70979905-70979924 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | - | chr3_4:70979914-70979933 | Msa0519050:intron | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | + | chr3_4:70979951-70979970 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | + | chr3_4:70979952-70979971 | None:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | - | chr3_4:70980133-70980152 | Msa0519050:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | - | chr3_4:70980207-70980226 | Msa0519050:CDS | 30.0% | |
| ! | GTTTAATTTCCTCTTCATCA+AGG | + | chr3_4:70978759-70978778 | None:intergenic | 30.0% |
| ! | ATGCATGCATGATTTTGTTA+TGG | + | chr3_4:70979905-70979924 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | - | chr3_4:70979914-70979933 | Msa0519050:intron | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | + | chr3_4:70979951-70979970 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | + | chr3_4:70979952-70979971 | None:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | - | chr3_4:70980133-70980152 | Msa0519050:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | - | chr3_4:70980207-70980226 | Msa0519050:CDS | 30.0% | |
| AGTATCTGATTCCATAAGCT+TGG | + | chr3_4:70978567-70978586 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | - | chr3_4:70978761-70978780 | Msa0519050:intron | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | - | chr3_4:70979164-70979183 | Msa0519050:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | - | chr3_4:70979352-70979371 | Msa0519050:CDS | 35.0% | |
| TGGTATAGTATACCTTGGTA+GGG | + | chr3_4:70979536-70979555 | None:intergenic | 35.0% | |
| ATGGTATAGTATACCTTGGT+AGG | + | chr3_4:70979537-70979556 | None:intergenic | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | + | chr3_4:70979689-70979708 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | + | chr3_4:70979735-70979754 | None:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | + | chr3_4:70979817-70979836 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | + | chr3_4:70979818-70979837 | None:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | + | chr3_4:70979823-70979842 | None:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | + | chr3_4:70979888-70979907 | None:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | - | chr3_4:70979998-70980017 | Msa0519050:intron | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | - | chr3_4:70980003-70980022 | Msa0519050:intron | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | - | chr3_4:70980116-70980135 | Msa0519050:CDS | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | - | chr3_4:70980230-70980249 | Msa0519050:CDS | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | + | chr3_4:70978567-70978586 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | - | chr3_4:70978761-70978780 | Msa0519050:intron | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | - | chr3_4:70979164-70979183 | Msa0519050:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | - | chr3_4:70979352-70979371 | Msa0519050:CDS | 35.0% | |
| TGGTATAGTATACCTTGGTA+GGG | + | chr3_4:70979536-70979555 | None:intergenic | 35.0% | |
| ATGGTATAGTATACCTTGGT+AGG | + | chr3_4:70979537-70979556 | None:intergenic | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | + | chr3_4:70979689-70979708 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | + | chr3_4:70979735-70979754 | None:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | + | chr3_4:70979817-70979836 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | + | chr3_4:70979818-70979837 | None:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | + | chr3_4:70979823-70979842 | None:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | + | chr3_4:70979888-70979907 | None:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | - | chr3_4:70979998-70980017 | Msa0519050:intron | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | - | chr3_4:70980003-70980022 | Msa0519050:intron | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | - | chr3_4:70980116-70980135 | Msa0519050:CDS | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | - | chr3_4:70980230-70980249 | Msa0519050:CDS | 35.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | - | chr3_4:70978553-70978572 | Msa0519050:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | - | chr3_4:70978573-70978592 | Msa0519050:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | - | chr3_4:70978762-70978781 | Msa0519050:intron | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | - | chr3_4:70979268-70979287 | Msa0519050:intron | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | - | chr3_4:70979287-70979306 | Msa0519050:intron | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | - | chr3_4:70979288-70979307 | Msa0519050:intron | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | - | chr3_4:70979318-70979337 | Msa0519050:intron | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | - | chr3_4:70979326-70979345 | Msa0519050:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | - | chr3_4:70979348-70979367 | Msa0519050:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | - | chr3_4:70979351-70979370 | Msa0519050:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | - | chr3_4:70979353-70979372 | Msa0519050:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | - | chr3_4:70979476-70979495 | Msa0519050:CDS | 40.0% | |
| GTAATGTTGTTAGTAGGGCA+TGG | + | chr3_4:70979556-70979575 | None:intergenic | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | + | chr3_4:70979816-70979835 | None:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | - | chr3_4:70980007-70980026 | Msa0519050:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | - | chr3_4:70980008-70980027 | Msa0519050:intron | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | - | chr3_4:70980009-70980028 | Msa0519050:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | - | chr3_4:70980108-70980127 | Msa0519050:CDS | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | + | chr3_4:70980178-70980197 | None:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | - | chr3_4:70980229-70980248 | Msa0519050:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | - | chr3_4:70980244-70980263 | Msa0519050:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | - | chr3_4:70980359-70980378 | Msa0519050:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | + | chr3_4:70980367-70980386 | None:intergenic | 40.0% | |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | + | chr3_4:70980391-70980410 | None:intergenic | 40.0% |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | - | chr3_4:70978553-70978572 | Msa0519050:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | - | chr3_4:70978573-70978592 | Msa0519050:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | - | chr3_4:70978762-70978781 | Msa0519050:intron | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | - | chr3_4:70979268-70979287 | Msa0519050:intron | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | - | chr3_4:70979287-70979306 | Msa0519050:intron | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | - | chr3_4:70979288-70979307 | Msa0519050:intron | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | - | chr3_4:70979318-70979337 | Msa0519050:intron | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | - | chr3_4:70979326-70979345 | Msa0519050:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | - | chr3_4:70979348-70979367 | Msa0519050:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | - | chr3_4:70979351-70979370 | Msa0519050:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | - | chr3_4:70979353-70979372 | Msa0519050:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | - | chr3_4:70979476-70979495 | Msa0519050:CDS | 40.0% | |
| GTAATGTTGTTAGTAGGGCA+TGG | + | chr3_4:70979556-70979575 | None:intergenic | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | + | chr3_4:70979816-70979835 | None:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | - | chr3_4:70980007-70980026 | Msa0519050:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | - | chr3_4:70980008-70980027 | Msa0519050:intron | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | - | chr3_4:70980009-70980028 | Msa0519050:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | - | chr3_4:70980108-70980127 | Msa0519050:CDS | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | + | chr3_4:70980178-70980197 | None:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | - | chr3_4:70980229-70980248 | Msa0519050:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | - | chr3_4:70980244-70980263 | Msa0519050:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | - | chr3_4:70980359-70980378 | Msa0519050:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | + | chr3_4:70980367-70980386 | None:intergenic | 40.0% | |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | + | chr3_4:70980391-70980410 | None:intergenic | 40.0% |
| CTTGCTGGGTAATAAGGTGA+CGG | + | chr3_4:70978508-70978527 | None:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | + | chr3_4:70978514-70978533 | None:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | + | chr3_4:70978522-70978541 | None:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | + | chr3_4:70978523-70978542 | None:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | - | chr3_4:70978523-70978542 | Msa0519050:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | - | chr3_4:70978526-70978545 | Msa0519050:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | - | chr3_4:70978527-70978546 | Msa0519050:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | - | chr3_4:70978612-70978631 | Msa0519050:CDS | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | - | chr3_4:70978615-70978634 | Msa0519050:CDS | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | - | chr3_4:70978675-70978694 | Msa0519050:CDS | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | - | chr3_4:70978688-70978707 | Msa0519050:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | - | chr3_4:70978700-70978719 | Msa0519050:CDS | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | - | chr3_4:70978763-70978782 | Msa0519050:intron | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | - | chr3_4:70979274-70979293 | Msa0519050:intron | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | - | chr3_4:70979289-70979308 | Msa0519050:intron | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | - | chr3_4:70979329-70979348 | Msa0519050:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | - | chr3_4:70979354-70979373 | Msa0519050:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | - | chr3_4:70979397-70979416 | Msa0519050:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | - | chr3_4:70979398-70979417 | Msa0519050:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | - | chr3_4:70979423-70979442 | Msa0519050:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | - | chr3_4:70979494-70979513 | Msa0519050:CDS | 45.0% | |
| GGGCATGGTATAGTATACCT+TGG | + | chr3_4:70979541-70979560 | None:intergenic | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | + | chr3_4:70979725-70979744 | None:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | + | chr3_4:70979936-70979955 | None:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | - | chr3_4:70980237-70980256 | Msa0519050:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | - | chr3_4:70980256-70980275 | Msa0519050:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | - | chr3_4:70980315-70980334 | Msa0519050:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | + | chr3_4:70978508-70978527 | None:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | + | chr3_4:70978514-70978533 | None:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | + | chr3_4:70978522-70978541 | None:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | + | chr3_4:70978523-70978542 | None:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | - | chr3_4:70978523-70978542 | Msa0519050:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | - | chr3_4:70978526-70978545 | Msa0519050:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | - | chr3_4:70978527-70978546 | Msa0519050:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | - | chr3_4:70978612-70978631 | Msa0519050:CDS | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | - | chr3_4:70978615-70978634 | Msa0519050:CDS | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | - | chr3_4:70978675-70978694 | Msa0519050:CDS | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | - | chr3_4:70978688-70978707 | Msa0519050:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | - | chr3_4:70978700-70978719 | Msa0519050:CDS | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | - | chr3_4:70978763-70978782 | Msa0519050:intron | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | - | chr3_4:70979274-70979293 | Msa0519050:intron | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | - | chr3_4:70979289-70979308 | Msa0519050:intron | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | - | chr3_4:70979329-70979348 | Msa0519050:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | - | chr3_4:70979354-70979373 | Msa0519050:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | - | chr3_4:70979397-70979416 | Msa0519050:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | - | chr3_4:70979398-70979417 | Msa0519050:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | - | chr3_4:70979423-70979442 | Msa0519050:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | - | chr3_4:70979494-70979513 | Msa0519050:CDS | 45.0% | |
| GGGCATGGTATAGTATACCT+TGG | + | chr3_4:70979541-70979560 | None:intergenic | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | + | chr3_4:70979725-70979744 | None:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | + | chr3_4:70979936-70979955 | None:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | - | chr3_4:70980237-70980256 | Msa0519050:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | - | chr3_4:70980256-70980275 | Msa0519050:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | - | chr3_4:70980315-70980334 | Msa0519050:CDS | 45.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | + | chr3_4:70978469-70978488 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | + | chr3_4:70978470-70978489 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | + | chr3_4:70978471-70978490 | None:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | + | chr3_4:70978496-70978515 | None:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | - | chr3_4:70978506-70978525 | Msa0519050:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | - | chr3_4:70978531-70978550 | Msa0519050:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | + | chr3_4:70978535-70978554 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | - | chr3_4:70978534-70978553 | Msa0519050:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | - | chr3_4:70978674-70978693 | Msa0519050:CDS | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | + | chr3_4:70978678-70978697 | None:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | - | chr3_4:70978719-70978738 | Msa0519050:CDS | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | - | chr3_4:70978720-70978739 | Msa0519050:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | - | chr3_4:70978728-70978747 | Msa0519050:CDS | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | + | chr3_4:70978783-70978802 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | - | chr3_4:70978814-70978833 | Msa0519050:intron | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | - | chr3_4:70979170-70979189 | Msa0519050:intron | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | + | chr3_4:70979253-70979272 | None:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | - | chr3_4:70979253-70979272 | Msa0519050:intron | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | - | chr3_4:70979294-70979313 | Msa0519050:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | - | chr3_4:70979303-70979322 | Msa0519050:intron | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | + | chr3_4:70979399-70979418 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | - | chr3_4:70979396-70979415 | Msa0519050:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | - | chr3_4:70979428-70979447 | Msa0519050:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | - | chr3_4:70979501-70979520 | Msa0519050:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | + | chr3_4:70979757-70979776 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | + | chr3_4:70979787-70979806 | None:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | + | chr3_4:70979813-70979832 | None:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | + | chr3_4:70980307-70980326 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | - | chr3_4:70980310-70980329 | Msa0519050:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | - | chr3_4:70980314-70980333 | Msa0519050:CDS | 50.0% | |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | - | chr3_4:70980401-70980420 | Msa0519050:CDS | 50.0% |
| ACTGCGTAGTCGAGAAGTTG+GGG | + | chr3_4:70978469-70978488 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | + | chr3_4:70978470-70978489 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | + | chr3_4:70978471-70978490 | None:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | + | chr3_4:70978496-70978515 | None:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | - | chr3_4:70978506-70978525 | Msa0519050:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | - | chr3_4:70978531-70978550 | Msa0519050:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | + | chr3_4:70978535-70978554 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | - | chr3_4:70978534-70978553 | Msa0519050:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | - | chr3_4:70978674-70978693 | Msa0519050:CDS | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | + | chr3_4:70978678-70978697 | None:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | - | chr3_4:70978719-70978738 | Msa0519050:CDS | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | - | chr3_4:70978720-70978739 | Msa0519050:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | - | chr3_4:70978728-70978747 | Msa0519050:CDS | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | + | chr3_4:70978783-70978802 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | - | chr3_4:70978814-70978833 | Msa0519050:intron | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | - | chr3_4:70979170-70979189 | Msa0519050:intron | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | + | chr3_4:70979253-70979272 | None:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | - | chr3_4:70979253-70979272 | Msa0519050:intron | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | - | chr3_4:70979294-70979313 | Msa0519050:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | - | chr3_4:70979303-70979322 | Msa0519050:intron | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | + | chr3_4:70979399-70979418 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | - | chr3_4:70979396-70979415 | Msa0519050:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | - | chr3_4:70979428-70979447 | Msa0519050:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | - | chr3_4:70979501-70979520 | Msa0519050:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | + | chr3_4:70979757-70979776 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | + | chr3_4:70979787-70979806 | None:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | + | chr3_4:70979813-70979832 | None:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | + | chr3_4:70980307-70980326 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | - | chr3_4:70980310-70980329 | Msa0519050:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | - | chr3_4:70980314-70980333 | Msa0519050:CDS | 50.0% | |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | - | chr3_4:70980401-70980420 | Msa0519050:CDS | 50.0% |
| TCACCGCCAGCCTATTCAAG+TGG | - | chr3_4:70978404-70978423 | Msa0519050:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | - | chr3_4:70978405-70978424 | Msa0519050:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | + | chr3_4:70978410-70978429 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | + | chr3_4:70978413-70978432 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | + | chr3_4:70978417-70978436 | None:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | + | chr3_4:70978440-70978459 | None:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | + | chr3_4:70978465-70978484 | None:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | - | chr3_4:70978624-70978643 | Msa0519050:CDS | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | - | chr3_4:70978747-70978766 | Msa0519050:intron | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | + | chr3_4:70978809-70978828 | None:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | + | chr3_4:70979192-70979211 | None:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | - | chr3_4:70979221-70979240 | Msa0519050:intron | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | + | chr3_4:70979508-70979527 | None:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | - | chr3_4:70979521-70979540 | Msa0519050:CDS | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | - | chr3_4:70979782-70979801 | Msa0519050:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | + | chr3_4:70979788-70979807 | None:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | + | chr3_4:70979799-70979818 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | - | chr3_4:70979805-70979824 | Msa0519050:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | - | chr3_4:70980263-70980282 | Msa0519050:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | - | chr3_4:70980436-70980455 | Msa0519050:CDS | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | + | chr3_4:70980449-70980468 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | - | chr3_4:70978404-70978423 | Msa0519050:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | - | chr3_4:70978405-70978424 | Msa0519050:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | + | chr3_4:70978410-70978429 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | + | chr3_4:70978413-70978432 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | + | chr3_4:70978417-70978436 | None:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | + | chr3_4:70978440-70978459 | None:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | + | chr3_4:70978465-70978484 | None:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | - | chr3_4:70978624-70978643 | Msa0519050:CDS | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | - | chr3_4:70978747-70978766 | Msa0519050:intron | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | + | chr3_4:70978809-70978828 | None:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | + | chr3_4:70979192-70979211 | None:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | - | chr3_4:70979221-70979240 | Msa0519050:intron | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | + | chr3_4:70979508-70979527 | None:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | - | chr3_4:70979521-70979540 | Msa0519050:CDS | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | - | chr3_4:70979782-70979801 | Msa0519050:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | + | chr3_4:70979788-70979807 | None:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | + | chr3_4:70979799-70979818 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | - | chr3_4:70979805-70979824 | Msa0519050:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | - | chr3_4:70980263-70980282 | Msa0519050:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | - | chr3_4:70980436-70980455 | Msa0519050:CDS | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | + | chr3_4:70980449-70980468 | None:intergenic | 55.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | + | chr3_4:70978398-70978417 | None:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | + | chr3_4:70978432-70978451 | None:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | + | chr3_4:70978444-70978463 | None:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | + | chr3_4:70978457-70978476 | None:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | + | chr3_4:70978460-70978479 | None:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | - | chr3_4:70978592-70978611 | Msa0519050:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | + | chr3_4:70978737-70978756 | None:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | - | chr3_4:70978775-70978794 | Msa0519050:intron | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | + | chr3_4:70978806-70978825 | None:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | - | chr3_4:70979191-70979210 | Msa0519050:intron | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | - | chr3_4:70979194-70979213 | Msa0519050:intron | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | - | chr3_4:70979220-70979239 | Msa0519050:intron | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | - | chr3_4:70979233-70979252 | Msa0519050:intron | 60.0% | |
| TACTTGGGAGGTAGCCGTGG+TGG | - | chr3_4:70979236-70979255 | Msa0519050:intron | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | + | chr3_4:70979417-70979436 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | - | chr3_4:70979767-70979786 | Msa0519050:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | - | chr3_4:70979768-70979787 | Msa0519050:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | + | chr3_4:70979772-70979791 | None:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | - | chr3_4:70979781-70979800 | Msa0519050:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | - | chr3_4:70979804-70979823 | Msa0519050:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | + | chr3_4:70979810-70979829 | None:intergenic | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | + | chr3_4:70978398-70978417 | None:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | + | chr3_4:70978432-70978451 | None:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | + | chr3_4:70978444-70978463 | None:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | + | chr3_4:70978457-70978476 | None:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | + | chr3_4:70978460-70978479 | None:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | - | chr3_4:70978592-70978611 | Msa0519050:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | + | chr3_4:70978737-70978756 | None:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | - | chr3_4:70978775-70978794 | Msa0519050:intron | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | + | chr3_4:70978806-70978825 | None:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | - | chr3_4:70979191-70979210 | Msa0519050:intron | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | - | chr3_4:70979194-70979213 | Msa0519050:intron | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | - | chr3_4:70979220-70979239 | Msa0519050:intron | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | - | chr3_4:70979233-70979252 | Msa0519050:intron | 60.0% | |
| TACTTGGGAGGTAGCCGTGG+TGG | - | chr3_4:70979236-70979255 | Msa0519050:intron | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | + | chr3_4:70979417-70979436 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | - | chr3_4:70979767-70979786 | Msa0519050:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | - | chr3_4:70979768-70979787 | Msa0519050:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | + | chr3_4:70979772-70979791 | None:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | - | chr3_4:70979781-70979800 | Msa0519050:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | - | chr3_4:70979804-70979823 | Msa0519050:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | + | chr3_4:70979810-70979829 | None:intergenic | 60.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | + | chr3_4:70978397-70978416 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | + | chr3_4:70978433-70978452 | None:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | + | chr3_4:70978448-70978467 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | - | chr3_4:70979173-70979192 | Msa0519050:intron | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | - | chr3_4:70979188-70979207 | Msa0519050:intron | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | - | chr3_4:70979197-70979216 | Msa0519050:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | - | chr3_4:70979198-70979217 | Msa0519050:intron | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | - | chr3_4:70979204-70979223 | Msa0519050:intron | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | - | chr3_4:70979224-70979243 | Msa0519050:intron | 65.0% |
| TTGGGAGGTAGCCGTGGTGG+AGG | - | chr3_4:70979239-70979258 | Msa0519050:intron | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | - | chr3_4:70979411-70979430 | Msa0519050:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | + | chr3_4:70978397-70978416 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | + | chr3_4:70978433-70978452 | None:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | + | chr3_4:70978448-70978467 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | - | chr3_4:70979173-70979192 | Msa0519050:intron | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | - | chr3_4:70979188-70979207 | Msa0519050:intron | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | - | chr3_4:70979197-70979216 | Msa0519050:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | - | chr3_4:70979198-70979217 | Msa0519050:intron | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | - | chr3_4:70979204-70979223 | Msa0519050:intron | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | - | chr3_4:70979224-70979243 | Msa0519050:intron | 65.0% |
| TTGGGAGGTAGCCGTGGTGG+AGG | - | chr3_4:70979239-70979258 | Msa0519050:intron | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | - | chr3_4:70979411-70979430 | Msa0519050:CDS | 65.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | - | chr3_4:70979207-70979226 | Msa0519050:intron | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | - | chr3_4:70979211-70979230 | Msa0519050:intron | 70.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | - | chr3_4:70979207-70979226 | Msa0519050:intron | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | - | chr3_4:70979211-70979230 | Msa0519050:intron | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | - | chr3_4:70979210-70979229 | Msa0519050:intron | 75.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | - | chr3_4:70979210-70979229 | Msa0519050:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 70978388 | 70980480 | 70978388 | ID=Msa0519050;Name=Msa0519050 |
| chr3_4 | mRNA | 70978388 | 70980480 | 70978388 | ID=Msa0519050-mRNA-1;Parent=Msa0519050;Name=Msa0519050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0|1|1|1|3|0|392 |
| chr3_4 | exon | 70980033 | 70980480 | 70980033 | ID=Msa0519050-mRNA-1:exon:19444;Parent=Msa0519050-mRNA-1 |
| chr3_4 | exon | 70979326 | 70979693 | 70979326 | ID=Msa0519050-mRNA-1:exon:19443;Parent=Msa0519050-mRNA-1 |
| chr3_4 | exon | 70978388 | 70978750 | 70978388 | ID=Msa0519050-mRNA-1:exon:19442;Parent=Msa0519050-mRNA-1 |
| chr3_4 | CDS | 70980033 | 70980480 | 70980033 | ID=Msa0519050-mRNA-1:cds;Parent=Msa0519050-mRNA-1 |
| chr3_4 | CDS | 70979326 | 70979693 | 70979326 | ID=Msa0519050-mRNA-1:cds;Parent=Msa0519050-mRNA-1 |
| chr3_4 | CDS | 70978388 | 70978750 | 70978388 | ID=Msa0519050-mRNA-1:cds;Parent=Msa0519050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
