Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981400 | AEO16611.1 | 99.745 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981400 | sp|O48559|UNI_PEA | 94.697 | 396 | 16 | 2 | 1 | 392 | 1 | 395 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981400 | G3FCS7 | 99.745 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 0.0 | 810 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0981400 | TF | LFY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0981400 | Msa1352090 | 0.844125 | 9.172120e-59 | -8.615850e-47 |
| Msa0519050 | Msa0981400 | 0.902077 | 1.401254e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981400 | MtrunA17_Chr3g0131591 | 99.490 | 392 | 2 | 0 | 1 | 392 | 1 | 392 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981400 | AT5G61850.1 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 5.47e-160 | 456 |
| Msa0981400 | AT5G61850.2 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 1.83e-157 | 450 |
Find 119 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 6_4:+20950660 | Msa0981400:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 6_4:+20949909 | Msa0981400:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 6_4:-20948941 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 6_4:+20949643 | Msa0981400:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 6_4:-20948950 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 6_4:+20950782 | Msa0981400:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 6_4:+20950539 | Msa0981400:intron |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 6_4:+20949829 | Msa0981400:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 6_4:+20949149 | Msa0981400:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 6_4:+20949637 | Msa0981400:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 6_4:-20948897 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 6_4:+20949150 | Msa0981400:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | 6_4:+20949653 | Msa0981400:CDS |
| TTAGTATAGTATACCTTGGT+AGG | 0.417534 | 6_4:-20949967 | None:intergenic |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 6_4:+20949205 | Msa0981400:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 6_4:-20949829 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 6_4:+20949640 | Msa0981400:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 6_4:-20949164 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 6_4:-20948962 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 6_4:+20949594 | Msa0981400:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 6_4:-20949847 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 6_4:-20950895 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 6_4:+20949603 | Msa0981400:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 6_4:+20948953 | Msa0981400:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 6_4:+20949720 | Msa0981400:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 6_4:+20950667 | Msa0981400:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 6_4:-20948898 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 6_4:+20950859 | Msa0981400:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 6_4:+20950737 | Msa0981400:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 6_4:+20949701 | Msa0981400:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 6_4:+20949630 | Msa0981400:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 6_4:-20948844 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 6_4:-20949622 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 6_4:-20948923 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 6_4:+20949721 | Msa0981400:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 6_4:-20949233 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 6_4:+20950531 | Msa0981400:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 6_4:-20948824 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 6_4:-20948949 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 6_4:+20949192 | Msa0981400:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 6_4:+20949118 | Msa0981400:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 6_4:-20948994 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 6_4:+20950630 | Msa0981400:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 6_4:+20949762 | Msa0981400:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 6_4:-20949186 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 6_4:-20949938 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 6_4:-20948840 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 6_4:+20949722 | Msa0981400:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 6_4:+20948961 | Msa0981400:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 6_4:+20949644 | Msa0981400:CDS |
| TTGGGAGGTAGCCGTGGTAG+AGG | 0.525371 | 6_4:+20949672 | Msa0981400:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 6_4:+20949830 | Msa0981400:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 6_4:+20949130 | Msa0981400:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 6_4:+20949736 | Msa0981400:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 6_4:+20949759 | Msa0981400:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 6_4:+20949727 | Msa0981400:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 6_4:+20948964 | Msa0981400:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 6_4:-20949236 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 6_4:+20949621 | Msa0981400:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 6_4:-20948875 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 6_4:+20950686 | Msa0981400:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 6_4:-20948884 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 6_4:-20948867 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 6_4:+20949177 | Msa0981400:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 6_4:-20950891 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 6_4:-20948860 | None:intergenic |
| TAGTATAGTATACCTTGGTA+GGG | 0.575157 | 6_4:-20949966 | None:intergenic |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 6_4:-20948825 | None:intergenic |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 6_4:-20950727 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 6_4:+20949624 | Msa0981400:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 6_4:+20949022 | Msa0981400:CDS |
| GAAGAAGATAACATCAGTGG+TGG | 0.589570 | 6_4:+20949784 | Msa0981400:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 6_4:+20950738 | Msa0981400:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 6_4:+20949927 | Msa0981400:CDS |
| CTTTCTTCTCTCCTCTACCA+CGG | 0.594392 | 6_4:-20949683 | None:intergenic |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 6_4:-20948896 | None:intergenic |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 6_4:+20950652 | Msa0981400:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 6_4:+20949631 | Msa0981400:CDS |
| TGGTAGAGGAGAGAAGAAAG+AGG | 0.608153 | 6_4:+20949686 | Msa0981400:CDS |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 6_4:+20949606 | Msa0981400:intron |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 6_4:+20948834 | Msa0981400:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 6_4:-20948871 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 6_4:+20950824 | Msa0981400:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 6_4:+20949707 | Msa0981400:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 6_4:+20950653 | Msa0981400:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | 6_4:+20949657 | Msa0981400:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 6_4:+20949244 | Msa0981400:CDS |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 6_4:-20948859 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 6_4:+20948936 | Msa0981400:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 6_4:+20949751 | Msa0981400:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | 6_4:+20949654 | Msa0981400:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 6_4:+20950733 | Msa0981400:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 6_4:-20948935 | None:intergenic |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.634743 | 6_4:-20950888 | None:intergenic |
| GTGGGCAGTTCCAACAGAGA+CGG | 0.635033 | 6_4:-20950869 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 6_4:+20948957 | Msa0981400:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 6_4:+20949191 | Msa0981400:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 6_4:+20949158 | Msa0981400:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 6_4:+20949954 | Msa0981400:CDS |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 6_4:-20948887 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 6_4:+20948835 | Msa0981400:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 6_4:+20949934 | Msa0981400:CDS |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.651576 | 6_4:+20949666 | Msa0981400:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.652391 | 6_4:-20950887 | None:intergenic |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 6_4:+20949054 | Msa0981400:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.654876 | 6_4:+20949785 | Msa0981400:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 6_4:+20949831 | Msa0981400:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 6_4:+20949844 | Msa0981400:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 6_4:+20948956 | Msa0981400:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 6_4:+20949597 | Msa0981400:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 6_4:+20950679 | Msa0981400:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 6_4:-20948837 | None:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 6_4:-20948892 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 6_4:+20949781 | Msa0981400:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 6_4:+20949627 | Msa0981400:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 6_4:-20950787 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 6_4:+20949193 | Msa0981400:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 6_4:-20949210 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 6_4:+20949003 | Msa0981400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr6_4:20949402-20949421 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr6_4:20949408-20949427 | Msa0981400:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | + | chr6_4:20949586-20949605 | Msa0981400:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr6_4:20949402-20949421 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr6_4:20949408-20949427 | Msa0981400:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | + | chr6_4:20949586-20949605 | Msa0981400:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr6_4:20949275-20949294 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr6_4:20950289-20950308 | Msa0981400:intron | 15.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr6_4:20949275-20949294 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr6_4:20950289-20950308 | Msa0981400:intron | 15.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr6_4:20949552-20949571 | None:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr6_4:20949594-20949613 | Msa0981400:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr6_4:20950274-20950293 | None:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr6_4:20950388-20950407 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr6_4:20950389-20950408 | None:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr6_4:20950405-20950424 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr6_4:20950484-20950503 | Msa0981400:intron | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr6_4:20949552-20949571 | None:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr6_4:20949594-20949613 | Msa0981400:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr6_4:20950274-20950293 | None:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr6_4:20950388-20950407 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr6_4:20950389-20950408 | None:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr6_4:20950405-20950424 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr6_4:20950484-20950503 | Msa0981400:intron | 20.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr6_4:20950410-20950429 | Msa0981400:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr6_4:20950411-20950430 | Msa0981400:intron | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr6_4:20950519-20950538 | Msa0981400:intron | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr6_4:20950410-20950429 | Msa0981400:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr6_4:20950411-20950430 | Msa0981400:intron | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr6_4:20950519-20950538 | Msa0981400:intron | 25.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr6_4:20949189-20949208 | None:intergenic | 30.0% |
| TAGTATAGTATACCTTGGTA+GGG | - | chr6_4:20949969-20949988 | None:intergenic | 30.0% | |
| TTAGTATAGTATACCTTGGT+AGG | - | chr6_4:20949970-20949989 | None:intergenic | 30.0% | |
| GTTGTTAGTATAGTATACCT+TGG | - | chr6_4:20949974-20949993 | None:intergenic | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr6_4:20950328-20950347 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr6_4:20950337-20950356 | Msa0981400:intron | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr6_4:20950374-20950393 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr6_4:20950375-20950394 | None:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | + | chr6_4:20950556-20950575 | Msa0981400:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr6_4:20950630-20950649 | Msa0981400:CDS | 30.0% | |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr6_4:20949189-20949208 | None:intergenic | 30.0% |
| TAGTATAGTATACCTTGGTA+GGG | - | chr6_4:20949969-20949988 | None:intergenic | 30.0% | |
| TTAGTATAGTATACCTTGGT+AGG | - | chr6_4:20949970-20949989 | None:intergenic | 30.0% | |
| GTTGTTAGTATAGTATACCT+TGG | - | chr6_4:20949974-20949993 | None:intergenic | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr6_4:20950328-20950347 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr6_4:20950337-20950356 | Msa0981400:intron | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr6_4:20950374-20950393 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr6_4:20950375-20950394 | None:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | + | chr6_4:20950556-20950575 | Msa0981400:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr6_4:20950630-20950649 | Msa0981400:CDS | 30.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr6_4:20948997-20949016 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr6_4:20949191-20949210 | Msa0981400:CDS | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr6_4:20949597-20949616 | Msa0981400:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | + | chr6_4:20949785-20949804 | Msa0981400:CDS | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | - | chr6_4:20950112-20950131 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr6_4:20950158-20950177 | None:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr6_4:20950240-20950259 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr6_4:20950241-20950260 | None:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr6_4:20950246-20950265 | None:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr6_4:20950311-20950330 | None:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr6_4:20950421-20950440 | Msa0981400:intron | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr6_4:20950426-20950445 | Msa0981400:intron | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr6_4:20950539-20950558 | Msa0981400:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr6_4:20950653-20950672 | Msa0981400:CDS | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr6_4:20948997-20949016 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr6_4:20949191-20949210 | Msa0981400:CDS | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr6_4:20949597-20949616 | Msa0981400:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | + | chr6_4:20949785-20949804 | Msa0981400:CDS | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | - | chr6_4:20950112-20950131 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr6_4:20950158-20950177 | None:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr6_4:20950240-20950259 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr6_4:20950241-20950260 | None:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr6_4:20950246-20950265 | None:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr6_4:20950311-20950330 | None:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr6_4:20950421-20950440 | Msa0981400:intron | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr6_4:20950426-20950445 | Msa0981400:intron | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr6_4:20950539-20950558 | Msa0981400:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr6_4:20950653-20950672 | Msa0981400:CDS | 35.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr6_4:20948983-20949002 | Msa0981400:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | + | chr6_4:20949003-20949022 | Msa0981400:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr6_4:20949192-20949211 | Msa0981400:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr6_4:20949701-20949720 | Msa0981400:CDS | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr6_4:20949720-20949739 | Msa0981400:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr6_4:20949721-20949740 | Msa0981400:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr6_4:20949751-20949770 | Msa0981400:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr6_4:20949759-20949778 | Msa0981400:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr6_4:20949781-20949800 | Msa0981400:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr6_4:20949784-20949803 | Msa0981400:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr6_4:20949909-20949928 | Msa0981400:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr6_4:20950239-20950258 | None:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr6_4:20950430-20950449 | Msa0981400:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr6_4:20950431-20950450 | Msa0981400:intron | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr6_4:20950432-20950451 | Msa0981400:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr6_4:20950531-20950550 | Msa0981400:intron | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr6_4:20950601-20950620 | None:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr6_4:20950652-20950671 | Msa0981400:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr6_4:20950667-20950686 | Msa0981400:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr6_4:20950782-20950801 | Msa0981400:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr6_4:20950790-20950809 | None:intergenic | 40.0% | |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr6_4:20950814-20950833 | None:intergenic | 40.0% |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr6_4:20948983-20949002 | Msa0981400:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | + | chr6_4:20949003-20949022 | Msa0981400:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr6_4:20949192-20949211 | Msa0981400:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr6_4:20949701-20949720 | Msa0981400:CDS | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr6_4:20949720-20949739 | Msa0981400:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr6_4:20949721-20949740 | Msa0981400:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr6_4:20949751-20949770 | Msa0981400:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr6_4:20949759-20949778 | Msa0981400:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr6_4:20949781-20949800 | Msa0981400:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr6_4:20949784-20949803 | Msa0981400:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr6_4:20949909-20949928 | Msa0981400:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr6_4:20950239-20950258 | None:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr6_4:20950430-20950449 | Msa0981400:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr6_4:20950431-20950450 | Msa0981400:intron | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr6_4:20950432-20950451 | Msa0981400:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr6_4:20950531-20950550 | Msa0981400:intron | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr6_4:20950601-20950620 | None:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr6_4:20950652-20950671 | Msa0981400:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr6_4:20950667-20950686 | Msa0981400:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr6_4:20950782-20950801 | Msa0981400:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr6_4:20950790-20950809 | None:intergenic | 40.0% | |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr6_4:20950814-20950833 | None:intergenic | 40.0% |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr6_4:20948938-20948957 | None:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr6_4:20948944-20948963 | None:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr6_4:20948952-20948971 | None:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr6_4:20948953-20948972 | None:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr6_4:20948953-20948972 | Msa0981400:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr6_4:20948956-20948975 | Msa0981400:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr6_4:20948957-20948976 | Msa0981400:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr6_4:20949042-20949061 | Msa0981400:CDS | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr6_4:20949045-20949064 | Msa0981400:CDS | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr6_4:20949105-20949124 | Msa0981400:CDS | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr6_4:20949118-20949137 | Msa0981400:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr6_4:20949130-20949149 | Msa0981400:CDS | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr6_4:20949193-20949212 | Msa0981400:CDS | 45.0% | |
| CTTTCTTCTCTCCTCTACCA+CGG | - | chr6_4:20949686-20949705 | None:intergenic | 45.0% | |
| TGGTAGAGGAGAGAAGAAAG+AGG | + | chr6_4:20949686-20949705 | Msa0981400:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr6_4:20949707-20949726 | Msa0981400:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr6_4:20949722-20949741 | Msa0981400:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr6_4:20949762-20949781 | Msa0981400:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr6_4:20949830-20949849 | Msa0981400:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr6_4:20949831-20949850 | Msa0981400:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr6_4:20949856-20949875 | Msa0981400:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr6_4:20949927-20949946 | Msa0981400:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr6_4:20950148-20950167 | None:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr6_4:20950359-20950378 | None:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr6_4:20950660-20950679 | Msa0981400:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr6_4:20950679-20950698 | Msa0981400:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr6_4:20950738-20950757 | Msa0981400:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr6_4:20948938-20948957 | None:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr6_4:20948944-20948963 | None:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr6_4:20948952-20948971 | None:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr6_4:20948953-20948972 | None:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr6_4:20948953-20948972 | Msa0981400:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr6_4:20948956-20948975 | Msa0981400:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr6_4:20948957-20948976 | Msa0981400:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr6_4:20949042-20949061 | Msa0981400:CDS | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr6_4:20949045-20949064 | Msa0981400:CDS | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr6_4:20949105-20949124 | Msa0981400:CDS | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr6_4:20949118-20949137 | Msa0981400:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr6_4:20949130-20949149 | Msa0981400:CDS | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr6_4:20949193-20949212 | Msa0981400:CDS | 45.0% | |
| CTTTCTTCTCTCCTCTACCA+CGG | - | chr6_4:20949686-20949705 | None:intergenic | 45.0% | |
| TGGTAGAGGAGAGAAGAAAG+AGG | + | chr6_4:20949686-20949705 | Msa0981400:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr6_4:20949707-20949726 | Msa0981400:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr6_4:20949722-20949741 | Msa0981400:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr6_4:20949762-20949781 | Msa0981400:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr6_4:20949830-20949849 | Msa0981400:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr6_4:20949831-20949850 | Msa0981400:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr6_4:20949856-20949875 | Msa0981400:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr6_4:20949927-20949946 | Msa0981400:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr6_4:20950148-20950167 | None:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr6_4:20950359-20950378 | None:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr6_4:20950660-20950679 | Msa0981400:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr6_4:20950679-20950698 | Msa0981400:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr6_4:20950738-20950757 | Msa0981400:CDS | 45.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr6_4:20948899-20948918 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr6_4:20948900-20948919 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr6_4:20948901-20948920 | None:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr6_4:20948926-20948945 | None:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | + | chr6_4:20948936-20948955 | Msa0981400:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr6_4:20948961-20948980 | Msa0981400:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr6_4:20948965-20948984 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr6_4:20948964-20948983 | Msa0981400:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr6_4:20949104-20949123 | Msa0981400:CDS | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr6_4:20949108-20949127 | None:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr6_4:20949149-20949168 | Msa0981400:CDS | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr6_4:20949150-20949169 | Msa0981400:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr6_4:20949158-20949177 | Msa0981400:CDS | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr6_4:20949213-20949232 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr6_4:20949244-20949263 | Msa0981400:CDS | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr6_4:20949603-20949622 | Msa0981400:intron | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr6_4:20949727-20949746 | Msa0981400:CDS | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr6_4:20949736-20949755 | Msa0981400:CDS | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr6_4:20949832-20949851 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr6_4:20949829-20949848 | Msa0981400:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr6_4:20949861-20949880 | Msa0981400:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr6_4:20949934-20949953 | Msa0981400:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr6_4:20950180-20950199 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr6_4:20950210-20950229 | None:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr6_4:20950236-20950255 | None:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr6_4:20950730-20950749 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr6_4:20950733-20950752 | Msa0981400:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr6_4:20950737-20950756 | Msa0981400:CDS | 50.0% | |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr6_4:20950824-20950843 | Msa0981400:CDS | 50.0% |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr6_4:20948899-20948918 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr6_4:20948900-20948919 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr6_4:20948901-20948920 | None:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr6_4:20948926-20948945 | None:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | + | chr6_4:20948936-20948955 | Msa0981400:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr6_4:20948961-20948980 | Msa0981400:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr6_4:20948965-20948984 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr6_4:20948964-20948983 | Msa0981400:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr6_4:20949104-20949123 | Msa0981400:CDS | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr6_4:20949108-20949127 | None:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr6_4:20949149-20949168 | Msa0981400:CDS | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr6_4:20949150-20949169 | Msa0981400:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr6_4:20949158-20949177 | Msa0981400:CDS | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr6_4:20949213-20949232 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr6_4:20949244-20949263 | Msa0981400:CDS | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr6_4:20949603-20949622 | Msa0981400:intron | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr6_4:20949727-20949746 | Msa0981400:CDS | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr6_4:20949736-20949755 | Msa0981400:CDS | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr6_4:20949832-20949851 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr6_4:20949829-20949848 | Msa0981400:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr6_4:20949861-20949880 | Msa0981400:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr6_4:20949934-20949953 | Msa0981400:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr6_4:20950180-20950199 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr6_4:20950210-20950229 | None:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr6_4:20950236-20950255 | None:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr6_4:20950730-20950749 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr6_4:20950733-20950752 | Msa0981400:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr6_4:20950737-20950756 | Msa0981400:CDS | 50.0% | |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr6_4:20950824-20950843 | Msa0981400:CDS | 50.0% |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr6_4:20948834-20948853 | Msa0981400:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr6_4:20948835-20948854 | Msa0981400:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr6_4:20948840-20948859 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr6_4:20948843-20948862 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr6_4:20948847-20948866 | None:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr6_4:20948870-20948889 | None:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr6_4:20948895-20948914 | None:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr6_4:20949054-20949073 | Msa0981400:CDS | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr6_4:20949177-20949196 | Msa0981400:CDS | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr6_4:20949239-20949258 | None:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr6_4:20949625-20949644 | None:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | + | chr6_4:20949654-20949673 | Msa0981400:CDS | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr6_4:20949941-20949960 | None:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr6_4:20949954-20949973 | Msa0981400:CDS | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr6_4:20950205-20950224 | Msa0981400:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr6_4:20950211-20950230 | None:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr6_4:20950222-20950241 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr6_4:20950228-20950247 | Msa0981400:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr6_4:20950686-20950705 | Msa0981400:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr6_4:20950859-20950878 | Msa0981400:CDS | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | - | chr6_4:20950872-20950891 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr6_4:20948834-20948853 | Msa0981400:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr6_4:20948835-20948854 | Msa0981400:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr6_4:20948840-20948859 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr6_4:20948843-20948862 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr6_4:20948847-20948866 | None:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr6_4:20948870-20948889 | None:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr6_4:20948895-20948914 | None:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr6_4:20949054-20949073 | Msa0981400:CDS | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr6_4:20949177-20949196 | Msa0981400:CDS | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr6_4:20949239-20949258 | None:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr6_4:20949625-20949644 | None:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | + | chr6_4:20949654-20949673 | Msa0981400:CDS | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr6_4:20949941-20949960 | None:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr6_4:20949954-20949973 | Msa0981400:CDS | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr6_4:20950205-20950224 | Msa0981400:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr6_4:20950211-20950230 | None:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr6_4:20950222-20950241 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr6_4:20950228-20950247 | Msa0981400:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr6_4:20950686-20950705 | Msa0981400:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr6_4:20950859-20950878 | Msa0981400:CDS | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | - | chr6_4:20950872-20950891 | None:intergenic | 55.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr6_4:20948828-20948847 | None:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr6_4:20948862-20948881 | None:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr6_4:20948874-20948893 | None:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr6_4:20948887-20948906 | None:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr6_4:20948890-20948909 | None:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr6_4:20949022-20949041 | Msa0981400:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr6_4:20949167-20949186 | None:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr6_4:20949205-20949224 | Msa0981400:CDS | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr6_4:20949236-20949255 | None:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr6_4:20949624-20949643 | Msa0981400:CDS | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr6_4:20949627-20949646 | Msa0981400:CDS | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | + | chr6_4:20949653-20949672 | Msa0981400:CDS | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | + | chr6_4:20949666-20949685 | Msa0981400:CDS | 60.0% | |
| TTGGGAGGTAGCCGTGGTAG+AGG | + | chr6_4:20949672-20949691 | Msa0981400:CDS | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr6_4:20949850-20949869 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr6_4:20950190-20950209 | Msa0981400:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr6_4:20950191-20950210 | Msa0981400:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr6_4:20950195-20950214 | None:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr6_4:20950204-20950223 | Msa0981400:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr6_4:20950227-20950246 | Msa0981400:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr6_4:20950233-20950252 | None:intergenic | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr6_4:20948828-20948847 | None:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr6_4:20948862-20948881 | None:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr6_4:20948874-20948893 | None:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr6_4:20948887-20948906 | None:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr6_4:20948890-20948909 | None:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr6_4:20949022-20949041 | Msa0981400:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr6_4:20949167-20949186 | None:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr6_4:20949205-20949224 | Msa0981400:CDS | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr6_4:20949236-20949255 | None:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr6_4:20949624-20949643 | Msa0981400:CDS | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr6_4:20949627-20949646 | Msa0981400:CDS | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | + | chr6_4:20949653-20949672 | Msa0981400:CDS | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | + | chr6_4:20949666-20949685 | Msa0981400:CDS | 60.0% | |
| TTGGGAGGTAGCCGTGGTAG+AGG | + | chr6_4:20949672-20949691 | Msa0981400:CDS | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr6_4:20949850-20949869 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr6_4:20950190-20950209 | Msa0981400:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr6_4:20950191-20950210 | Msa0981400:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr6_4:20950195-20950214 | None:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr6_4:20950204-20950223 | Msa0981400:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr6_4:20950227-20950246 | Msa0981400:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr6_4:20950233-20950252 | None:intergenic | 60.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr6_4:20948827-20948846 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr6_4:20948863-20948882 | None:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr6_4:20948878-20948897 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr6_4:20949606-20949625 | Msa0981400:intron | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr6_4:20949621-20949640 | Msa0981400:CDS | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr6_4:20949630-20949649 | Msa0981400:CDS | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr6_4:20949631-20949650 | Msa0981400:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr6_4:20949637-20949656 | Msa0981400:CDS | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | + | chr6_4:20949657-20949676 | Msa0981400:CDS | 65.0% |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr6_4:20949844-20949863 | Msa0981400:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr6_4:20948827-20948846 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr6_4:20948863-20948882 | None:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr6_4:20948878-20948897 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr6_4:20949606-20949625 | Msa0981400:intron | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr6_4:20949621-20949640 | Msa0981400:CDS | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr6_4:20949630-20949649 | Msa0981400:CDS | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr6_4:20949631-20949650 | Msa0981400:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr6_4:20949637-20949656 | Msa0981400:CDS | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | + | chr6_4:20949657-20949676 | Msa0981400:CDS | 65.0% |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr6_4:20949844-20949863 | Msa0981400:CDS | 65.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr6_4:20949640-20949659 | Msa0981400:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr6_4:20949644-20949663 | Msa0981400:CDS | 70.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr6_4:20949640-20949659 | Msa0981400:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr6_4:20949644-20949663 | Msa0981400:CDS | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr6_4:20949643-20949662 | Msa0981400:CDS | 75.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr6_4:20949643-20949662 | Msa0981400:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 20948818 | 20950903 | 20948818 | ID=Msa0981400;Name=Msa0981400 |
| chr6_4 | mRNA | 20948818 | 20950903 | 20948818 | ID=Msa0981400-mRNA-1;Parent=Msa0981400;Name=Msa0981400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|392 |
| chr6_4 | exon | 20948818 | 20949265 | 20948818 | ID=Msa0981400-mRNA-1:exon:6388;Parent=Msa0981400-mRNA-1 |
| chr6_4 | exon | 20949608 | 20949975 | 20949608 | ID=Msa0981400-mRNA-1:exon:6389;Parent=Msa0981400-mRNA-1 |
| chr6_4 | exon | 20950541 | 20950903 | 20950541 | ID=Msa0981400-mRNA-1:exon:6390;Parent=Msa0981400-mRNA-1 |
| chr6_4 | CDS | 20948818 | 20949265 | 20948818 | ID=Msa0981400-mRNA-1:cds;Parent=Msa0981400-mRNA-1 |
| chr6_4 | CDS | 20949608 | 20949975 | 20949608 | ID=Msa0981400-mRNA-1:cds;Parent=Msa0981400-mRNA-1 |
| chr6_4 | CDS | 20950541 | 20950903 | 20950541 | ID=Msa0981400-mRNA-1:cds;Parent=Msa0981400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
