Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352090 | AEO16611.1 | 100.000 | 342 | 0 | 0 | 1 | 342 | 1 | 342 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352090 | sp|O48559|UNI_PEA | 95.376 | 346 | 11 | 2 | 1 | 342 | 1 | 345 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352090 | G3FCS7 | 100.000 | 342 | 0 | 0 | 1 | 342 | 1 | 342 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1352090 | TF | LFY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0981400 | Msa1352090 | 0.844125 | 9.172120e-59 | -8.615850e-47 |
| Msa0519050 | Msa1352090 | 0.937696 | 2.275563e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352090 | MtrunA17_Chr3g0131591 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352090 | AT5G61850.1 | 64.167 | 360 | 105 | 7 | 1 | 342 | 1 | 354 | 8.72e-133 | 385 |
| Msa1352090 | AT5G61850.2 | 63.462 | 364 | 105 | 8 | 1 | 342 | 1 | 358 | 2.81e-130 | 379 |
Find 100 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | tig0012573:-831 | Msa1352090:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | tig0012573:+1799 | Msa1352090:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | tig0012573:-1097 | Msa1352090:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | tig0012573:+1790 | Msa1352090:intergenic |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | tig0012573:-911 | Msa1352090:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | tig0012573:-1591 | Msa1352090:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | tig0012573:-1103 | Msa1352090:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | tig0012573:+1843 | Msa1352090:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | tig0012573:-1590 | Msa1352090:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | tig0012573:-1087 | Msa1352090:CDS |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | tig0012573:-1535 | Msa1352090:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | tig0012573:+911 | Msa1352090:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | tig0012573:-1100 | Msa1352090:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | tig0012573:+1576 | Msa1352090:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | tig0012573:+1778 | Msa1352090:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | tig0012573:-1146 | Msa1352090:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | tig0012573:+893 | Msa1352090:intergenic |
| ATGGTATAGTATACCTTGGT+AGG | 0.452240 | tig0012573:+773 | Msa1352090:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | tig0012573:-1137 | Msa1352090:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | tig0012573:-1787 | Msa1352090:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | tig0012573:-1020 | Msa1352090:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | tig0012573:+1842 | Msa1352090:intergenic |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | tig0012573:-1039 | Msa1352090:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | tig0012573:-1110 | Msa1352090:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | tig0012573:+1896 | Msa1352090:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | tig0012573:+1118 | Msa1352090:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | tig0012573:+1817 | Msa1352090:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | tig0012573:-1019 | Msa1352090:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | tig0012573:+1507 | Msa1352090:intergenic |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | tig0012573:+1916 | Msa1352090:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | tig0012573:+1791 | Msa1352090:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | tig0012573:-1548 | Msa1352090:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | tig0012573:-1622 | Msa1352090:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | tig0012573:+1746 | Msa1352090:intergenic |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | tig0012573:-978 | Msa1352090:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | tig0012573:+1554 | Msa1352090:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | tig0012573:+802 | Msa1352090:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | tig0012573:+1900 | Msa1352090:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | tig0012573:-1018 | Msa1352090:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | tig0012573:-1779 | Msa1352090:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | tig0012573:-1096 | Msa1352090:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | tig0012573:-910 | Msa1352090:CDS |
| TTGGGAGGTAGCCGTGGTGG+AGG | 0.529312 | tig0012573:-1068 | Msa1352090:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | tig0012573:-1610 | Msa1352090:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | tig0012573:-1004 | Msa1352090:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | tig0012573:-981 | Msa1352090:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | tig0012573:-1013 | Msa1352090:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | tig0012573:-1776 | Msa1352090:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | tig0012573:+1504 | Msa1352090:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | tig0012573:-1119 | Msa1352090:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | tig0012573:+1865 | Msa1352090:intergenic |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | tig0012573:+1856 | Msa1352090:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | tig0012573:+1873 | Msa1352090:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | tig0012573:-1563 | Msa1352090:CDS |
| TACTTGGGAGGTAGCCGTGG+TGG | 0.568788 | tig0012573:-1071 | Msa1352090:CDS |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | tig0012573:+1880 | Msa1352090:intergenic |
| GAAGATAACATCAGTGGTGG+GGG | 0.573896 | tig0012573:-953 | Msa1352090:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.574442 | tig0012573:-955 | Msa1352090:CDS |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | tig0012573:+1915 | Msa1352090:intergenic |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.579508 | tig0012573:-1074 | Msa1352090:CDS |
| AGAAGATAACATCAGTGGTG+GGG | 0.583595 | tig0012573:-954 | Msa1352090:CDS |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | tig0012573:-1116 | Msa1352090:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | tig0012573:-1718 | Msa1352090:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | tig0012573:-813 | Msa1352090:CDS |
| TGGTGGAGGAGAGAAGAAAG+AGG | 0.595087 | tig0012573:-1054 | Msa1352090:CDS |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | tig0012573:+1844 | Msa1352090:intergenic |
| CTTTCTTCTCTCCTCCACCA+CGG | 0.599475 | tig0012573:+1057 | Msa1352090:intergenic |
| GAAGAAGATAACATCAGTGG+TGG | 0.599484 | tig0012573:-956 | Msa1352090:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | tig0012573:-1109 | Msa1352090:CDS |
| TGGTATAGTATACCTTGGTA+GGG | 0.608009 | tig0012573:+774 | Msa1352090:intergenic |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | tig0012573:-1134 | Msa1352090:CDS |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | tig0012573:-1906 | Msa1352090:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | tig0012573:+1869 | Msa1352090:intergenic |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | tig0012573:-1033 | Msa1352090:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | tig0012573:-1083 | Msa1352090:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | tig0012573:-1496 | Msa1352090:intron |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | tig0012573:+1881 | Msa1352090:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | tig0012573:-1804 | Msa1352090:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | tig0012573:-989 | Msa1352090:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | tig0012573:-1086 | Msa1352090:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | tig0012573:+1805 | Msa1352090:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | tig0012573:-1783 | Msa1352090:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | tig0012573:-1549 | Msa1352090:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | tig0012573:-1582 | Msa1352090:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | tig0012573:-786 | Msa1352090:intron |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | tig0012573:+1853 | Msa1352090:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | tig0012573:-1905 | Msa1352090:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | tig0012573:-806 | Msa1352090:CDS |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | tig0012573:-1686 | Msa1352090:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | tig0012573:-909 | Msa1352090:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | tig0012573:-896 | Msa1352090:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | tig0012573:-1784 | Msa1352090:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | tig0012573:-1143 | Msa1352090:intron |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | tig0012573:+1903 | Msa1352090:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | tig0012573:+1848 | Msa1352090:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | tig0012573:-959 | Msa1352090:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | tig0012573:-1113 | Msa1352090:CDS |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | tig0012573:-1547 | Msa1352090:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | tig0012573:+1530 | Msa1352090:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | tig0012573:-1737 | Msa1352090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACAAATAAAAAATTGTT+AGG | + | tig0012573:586-605 | Msa1352090:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | - | tig0012573:592-611 | Msa1352090:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | - | tig0012573:770-789 | Msa1352090:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | + | tig0012573:586-605 | Msa1352090:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | - | tig0012573:592-611 | Msa1352090:intron | 10.0% |
| !! | ATATACTATATTCTTAATTA+AGG | - | tig0012573:770-789 | Msa1352090:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | + | tig0012573:459-478 | Msa1352090:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | - | tig0012573:1483-1502 | Msa1352090:intron | 15.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | + | tig0012573:459-478 | Msa1352090:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | - | tig0012573:1483-1502 | Msa1352090:intron | 15.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | + | tig0012573:736-755 | Msa1352090:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | - | tig0012573:778-797 | Msa1352090:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | + | tig0012573:1468-1487 | Msa1352090:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | + | tig0012573:1582-1601 | Msa1352090:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | + | tig0012573:1583-1602 | Msa1352090:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | + | tig0012573:1599-1618 | Msa1352090:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | - | tig0012573:1678-1697 | Msa1352090:CDS | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | + | tig0012573:736-755 | Msa1352090:intergenic | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | - | tig0012573:778-797 | Msa1352090:intron | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | + | tig0012573:1468-1487 | Msa1352090:intergenic | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | + | tig0012573:1582-1601 | Msa1352090:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | + | tig0012573:1583-1602 | Msa1352090:intergenic | 20.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | + | tig0012573:1599-1618 | Msa1352090:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | - | tig0012573:1678-1697 | Msa1352090:CDS | 20.0% |
| ! | ACTTTGTAATGTTGTTAGTA+GGG | + | tig0012573:1178-1197 | Msa1352090:intergenic | 25.0% |
| ! | AACTTTGTAATGTTGTTAGT+AGG | + | tig0012573:1179-1198 | Msa1352090:intergenic | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | - | tig0012573:1604-1623 | Msa1352090:CDS | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | - | tig0012573:1605-1624 | Msa1352090:CDS | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | - | tig0012573:1713-1732 | Msa1352090:CDS | 25.0% |
| ! | ACTTTGTAATGTTGTTAGTA+GGG | + | tig0012573:1178-1197 | Msa1352090:intergenic | 25.0% |
| ! | AACTTTGTAATGTTGTTAGT+AGG | + | tig0012573:1179-1198 | Msa1352090:intergenic | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | - | tig0012573:1604-1623 | Msa1352090:CDS | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | - | tig0012573:1605-1624 | Msa1352090:CDS | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | - | tig0012573:1713-1732 | Msa1352090:CDS | 25.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | + | tig0012573:373-392 | Msa1352090:intergenic | 30.0% |
| ! | ATGCATGCATGATTTTGTTA+TGG | + | tig0012573:1522-1541 | Msa1352090:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | - | tig0012573:1531-1550 | Msa1352090:CDS | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | + | tig0012573:1568-1587 | Msa1352090:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | + | tig0012573:1569-1588 | Msa1352090:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | - | tig0012573:1750-1769 | Msa1352090:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | - | tig0012573:1824-1843 | Msa1352090:CDS | 30.0% | |
| ! | GTTTAATTTCCTCTTCATCA+AGG | + | tig0012573:373-392 | Msa1352090:intergenic | 30.0% |
| ! | ATGCATGCATGATTTTGTTA+TGG | + | tig0012573:1522-1541 | Msa1352090:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | - | tig0012573:1531-1550 | Msa1352090:CDS | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | + | tig0012573:1568-1587 | Msa1352090:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | + | tig0012573:1569-1588 | Msa1352090:intergenic | 30.0% |
| TTTAGGTATGCAAAAAAAGC+TGG | - | tig0012573:1750-1769 | Msa1352090:CDS | 30.0% | |
| ATTGCATTGTTTAGATGAAG+AGG | - | tig0012573:1824-1843 | Msa1352090:CDS | 30.0% | |
| AGTATCTGATTCCATAAGCT+TGG | + | tig0012573:181-200 | Msa1352090:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | - | tig0012573:375-394 | Msa1352090:intron | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | - | tig0012573:781-800 | Msa1352090:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | - | tig0012573:969-988 | Msa1352090:CDS | 35.0% | |
| TGGTATAGTATACCTTGGTA+GGG | + | tig0012573:1153-1172 | Msa1352090:intergenic | 35.0% | |
| ATGGTATAGTATACCTTGGT+AGG | + | tig0012573:1154-1173 | Msa1352090:intergenic | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | + | tig0012573:1306-1325 | Msa1352090:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | + | tig0012573:1352-1371 | Msa1352090:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | + | tig0012573:1434-1453 | Msa1352090:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | + | tig0012573:1435-1454 | Msa1352090:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | + | tig0012573:1440-1459 | Msa1352090:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | + | tig0012573:1505-1524 | Msa1352090:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | - | tig0012573:1615-1634 | Msa1352090:CDS | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | - | tig0012573:1620-1639 | Msa1352090:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | - | tig0012573:1733-1752 | Msa1352090:CDS | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | - | tig0012573:1847-1866 | Msa1352090:CDS | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | + | tig0012573:181-200 | Msa1352090:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | - | tig0012573:375-394 | Msa1352090:intron | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | - | tig0012573:781-800 | Msa1352090:intron | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | - | tig0012573:969-988 | Msa1352090:CDS | 35.0% | |
| TGGTATAGTATACCTTGGTA+GGG | + | tig0012573:1153-1172 | Msa1352090:intergenic | 35.0% | |
| ATGGTATAGTATACCTTGGT+AGG | + | tig0012573:1154-1173 | Msa1352090:intergenic | 35.0% | |
| AACACAACACAAAATCTGAC+TGG | + | tig0012573:1306-1325 | Msa1352090:intergenic | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | + | tig0012573:1352-1371 | Msa1352090:intergenic | 35.0% |
| TATGAAAATCCCAGTGGAAT+GGG | + | tig0012573:1434-1453 | Msa1352090:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | + | tig0012573:1435-1454 | Msa1352090:intergenic | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | + | tig0012573:1440-1459 | Msa1352090:intergenic | 35.0% | |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | + | tig0012573:1505-1524 | Msa1352090:intergenic | 35.0% |
| CTTTGTGTATGGGATAGTAT+AGG | - | tig0012573:1615-1634 | Msa1352090:CDS | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | - | tig0012573:1620-1639 | Msa1352090:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | - | tig0012573:1733-1752 | Msa1352090:CDS | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | - | tig0012573:1847-1866 | Msa1352090:CDS | 35.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | - | tig0012573:167-186 | Msa1352090:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | - | tig0012573:187-206 | Msa1352090:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | - | tig0012573:376-395 | Msa1352090:intron | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | - | tig0012573:885-904 | Msa1352090:CDS | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | - | tig0012573:904-923 | Msa1352090:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | - | tig0012573:905-924 | Msa1352090:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | - | tig0012573:935-954 | Msa1352090:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | - | tig0012573:943-962 | Msa1352090:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | - | tig0012573:965-984 | Msa1352090:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | - | tig0012573:968-987 | Msa1352090:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | - | tig0012573:970-989 | Msa1352090:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | - | tig0012573:1093-1112 | Msa1352090:CDS | 40.0% | |
| GTAATGTTGTTAGTAGGGCA+TGG | + | tig0012573:1173-1192 | Msa1352090:intergenic | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | + | tig0012573:1433-1452 | Msa1352090:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | - | tig0012573:1624-1643 | Msa1352090:CDS | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | - | tig0012573:1625-1644 | Msa1352090:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | - | tig0012573:1626-1645 | Msa1352090:CDS | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | - | tig0012573:1725-1744 | Msa1352090:CDS | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | + | tig0012573:1795-1814 | Msa1352090:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | - | tig0012573:1846-1865 | Msa1352090:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | - | tig0012573:1861-1880 | Msa1352090:CDS | 40.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | - | tig0012573:167-186 | Msa1352090:CDS | 40.0% |
| TGGAATCAGATACTACACTG+CGG | - | tig0012573:187-206 | Msa1352090:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | - | tig0012573:376-395 | Msa1352090:intron | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | - | tig0012573:885-904 | Msa1352090:CDS | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | - | tig0012573:904-923 | Msa1352090:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | - | tig0012573:905-924 | Msa1352090:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | - | tig0012573:935-954 | Msa1352090:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | - | tig0012573:943-962 | Msa1352090:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | - | tig0012573:965-984 | Msa1352090:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | - | tig0012573:968-987 | Msa1352090:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | - | tig0012573:970-989 | Msa1352090:CDS | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | - | tig0012573:1093-1112 | Msa1352090:CDS | 40.0% | |
| GTAATGTTGTTAGTAGGGCA+TGG | + | tig0012573:1173-1192 | Msa1352090:intergenic | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | + | tig0012573:1433-1452 | Msa1352090:intergenic | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | - | tig0012573:1624-1643 | Msa1352090:CDS | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | - | tig0012573:1625-1644 | Msa1352090:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | - | tig0012573:1626-1645 | Msa1352090:CDS | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | - | tig0012573:1725-1744 | Msa1352090:CDS | 40.0% | |
| ! | TGCACGTAGTGTCTCATTTT+TGG | + | tig0012573:1795-1814 | Msa1352090:intergenic | 40.0% |
| GTATCAAATGAGCTGAGAAG+AGG | - | tig0012573:1846-1865 | Msa1352090:CDS | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | - | tig0012573:1861-1880 | Msa1352090:CDS | 40.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | + | tig0012573:122-141 | Msa1352090:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | + | tig0012573:128-147 | Msa1352090:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | + | tig0012573:136-155 | Msa1352090:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | + | tig0012573:137-156 | Msa1352090:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | - | tig0012573:137-156 | Msa1352090:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | - | tig0012573:140-159 | Msa1352090:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | - | tig0012573:141-160 | Msa1352090:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | - | tig0012573:226-245 | Msa1352090:intron | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | - | tig0012573:229-248 | Msa1352090:intron | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | - | tig0012573:289-308 | Msa1352090:intron | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | - | tig0012573:302-321 | Msa1352090:intron | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | - | tig0012573:314-333 | Msa1352090:intron | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | - | tig0012573:377-396 | Msa1352090:intron | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | - | tig0012573:891-910 | Msa1352090:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | - | tig0012573:906-925 | Msa1352090:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | - | tig0012573:946-965 | Msa1352090:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | - | tig0012573:971-990 | Msa1352090:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | - | tig0012573:1014-1033 | Msa1352090:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | - | tig0012573:1015-1034 | Msa1352090:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | - | tig0012573:1040-1059 | Msa1352090:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | - | tig0012573:1111-1130 | Msa1352090:CDS | 45.0% | |
| GGGCATGGTATAGTATACCT+TGG | + | tig0012573:1158-1177 | Msa1352090:intergenic | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | + | tig0012573:1342-1361 | Msa1352090:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | + | tig0012573:1553-1572 | Msa1352090:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | - | tig0012573:1854-1873 | Msa1352090:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | - | tig0012573:1873-1892 | Msa1352090:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | + | tig0012573:122-141 | Msa1352090:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | + | tig0012573:128-147 | Msa1352090:intergenic | 45.0% | |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | + | tig0012573:136-155 | Msa1352090:intergenic | 45.0% |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | + | tig0012573:137-156 | Msa1352090:intergenic | 45.0% |
| GCAAGGTTACCAAGAGAACT+TGG | - | tig0012573:137-156 | Msa1352090:CDS | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | - | tig0012573:140-159 | Msa1352090:CDS | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | - | tig0012573:141-160 | Msa1352090:CDS | 45.0% | |
| !! | TGGTTTTACAGTGAGCACGT+TGG | - | tig0012573:226-245 | Msa1352090:intron | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | - | tig0012573:229-248 | Msa1352090:intron | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | - | tig0012573:289-308 | Msa1352090:intron | 45.0% |
| TTTCGTTGGGATCTTCTCGT+TGG | - | tig0012573:302-321 | Msa1352090:intron | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | - | tig0012573:314-333 | Msa1352090:intron | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | - | tig0012573:377-396 | Msa1352090:intron | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | - | tig0012573:891-910 | Msa1352090:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | - | tig0012573:906-925 | Msa1352090:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | - | tig0012573:946-965 | Msa1352090:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | - | tig0012573:971-990 | Msa1352090:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | - | tig0012573:1014-1033 | Msa1352090:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | - | tig0012573:1015-1034 | Msa1352090:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | - | tig0012573:1040-1059 | Msa1352090:CDS | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | - | tig0012573:1111-1130 | Msa1352090:CDS | 45.0% | |
| GGGCATGGTATAGTATACCT+TGG | + | tig0012573:1158-1177 | Msa1352090:intergenic | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | + | tig0012573:1342-1361 | Msa1352090:intergenic | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | + | tig0012573:1553-1572 | Msa1352090:intergenic | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | - | tig0012573:1854-1873 | Msa1352090:CDS | 45.0% | |
| AAGGAAAGAGGAGAGAACGT+TGG | - | tig0012573:1873-1892 | Msa1352090:CDS | 45.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | + | tig0012573:83-102 | Msa1352090:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | + | tig0012573:84-103 | Msa1352090:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | + | tig0012573:85-104 | Msa1352090:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | + | tig0012573:110-129 | Msa1352090:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | - | tig0012573:120-139 | Msa1352090:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | - | tig0012573:145-164 | Msa1352090:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | + | tig0012573:149-168 | Msa1352090:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | - | tig0012573:148-167 | Msa1352090:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | - | tig0012573:288-307 | Msa1352090:intron | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | + | tig0012573:292-311 | Msa1352090:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | - | tig0012573:333-352 | Msa1352090:intron | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | - | tig0012573:334-353 | Msa1352090:intron | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | - | tig0012573:342-361 | Msa1352090:intron | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | + | tig0012573:397-416 | Msa1352090:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | - | tig0012573:428-447 | Msa1352090:intron | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | - | tig0012573:787-806 | Msa1352090:CDS | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | + | tig0012573:870-889 | Msa1352090:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | - | tig0012573:870-889 | Msa1352090:CDS | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | - | tig0012573:911-930 | Msa1352090:CDS | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | - | tig0012573:920-939 | Msa1352090:CDS | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | + | tig0012573:1016-1035 | Msa1352090:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | - | tig0012573:1013-1032 | Msa1352090:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | - | tig0012573:1045-1064 | Msa1352090:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | - | tig0012573:1118-1137 | Msa1352090:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | + | tig0012573:1374-1393 | Msa1352090:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | + | tig0012573:1404-1423 | Msa1352090:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | + | tig0012573:1430-1449 | Msa1352090:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | + | tig0012573:1924-1943 | Msa1352090:intergenic | 50.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | + | tig0012573:83-102 | Msa1352090:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | + | tig0012573:84-103 | Msa1352090:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | + | tig0012573:85-104 | Msa1352090:intergenic | 50.0% | |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | + | tig0012573:110-129 | Msa1352090:intergenic | 50.0% |
| CGTCACCTTATTACCCAGCA+AGG | - | tig0012573:120-139 | Msa1352090:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | - | tig0012573:145-164 | Msa1352090:CDS | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | + | tig0012573:149-168 | Msa1352090:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | - | tig0012573:148-167 | Msa1352090:CDS | 50.0% | |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | - | tig0012573:288-307 | Msa1352090:intron | 50.0% |
| CCCAACGAAAAATCTGCGAG+AGG | + | tig0012573:292-311 | Msa1352090:intergenic | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | - | tig0012573:333-352 | Msa1352090:intron | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | - | tig0012573:334-353 | Msa1352090:intron | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | - | tig0012573:342-361 | Msa1352090:intron | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | + | tig0012573:397-416 | Msa1352090:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | - | tig0012573:428-447 | Msa1352090:intron | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | - | tig0012573:787-806 | Msa1352090:CDS | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | + | tig0012573:870-889 | Msa1352090:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | - | tig0012573:870-889 | Msa1352090:CDS | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | - | tig0012573:911-930 | Msa1352090:CDS | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | - | tig0012573:920-939 | Msa1352090:CDS | 50.0% |
| CCAGGCTCTGTCACAATGAA+TGG | + | tig0012573:1016-1035 | Msa1352090:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | - | tig0012573:1013-1032 | Msa1352090:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | - | tig0012573:1045-1064 | Msa1352090:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | - | tig0012573:1118-1137 | Msa1352090:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | + | tig0012573:1374-1393 | Msa1352090:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | + | tig0012573:1404-1423 | Msa1352090:intergenic | 50.0% | |
| AAAATCCCAGTGGAATGGGG+AGG | + | tig0012573:1430-1449 | Msa1352090:intergenic | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | + | tig0012573:1924-1943 | Msa1352090:intergenic | 50.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | - | tig0012573:18-37 | Msa1352090:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | - | tig0012573:19-38 | Msa1352090:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | + | tig0012573:24-43 | Msa1352090:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | + | tig0012573:27-46 | Msa1352090:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | + | tig0012573:31-50 | Msa1352090:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | + | tig0012573:54-73 | Msa1352090:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | + | tig0012573:79-98 | Msa1352090:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | - | tig0012573:238-257 | Msa1352090:intron | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | - | tig0012573:361-380 | Msa1352090:intron | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | + | tig0012573:423-442 | Msa1352090:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | + | tig0012573:809-828 | Msa1352090:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | - | tig0012573:838-857 | Msa1352090:CDS | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | + | tig0012573:1125-1144 | Msa1352090:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | - | tig0012573:1138-1157 | Msa1352090:intron | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | - | tig0012573:1399-1418 | Msa1352090:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | + | tig0012573:1405-1424 | Msa1352090:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | + | tig0012573:1416-1435 | Msa1352090:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | - | tig0012573:1422-1441 | Msa1352090:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | - | tig0012573:1880-1899 | Msa1352090:CDS | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | - | tig0012573:18-37 | Msa1352090:CDS | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | - | tig0012573:19-38 | Msa1352090:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | + | tig0012573:24-43 | Msa1352090:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | + | tig0012573:27-46 | Msa1352090:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | + | tig0012573:31-50 | Msa1352090:intergenic | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | + | tig0012573:54-73 | Msa1352090:intergenic | 55.0% |
| CGTAGTCGAGAAGTTGGGGA+CGG | + | tig0012573:79-98 | Msa1352090:intergenic | 55.0% | |
| ! | GAGCACGTTGGTGGACATGA+AGG | - | tig0012573:238-257 | Msa1352090:intron | 55.0% |
| ACGGAGACGCCTTGATGAAG+AGG | - | tig0012573:361-380 | Msa1352090:intron | 55.0% | |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | + | tig0012573:423-442 | Msa1352090:intergenic | 55.0% |
| TCCTTCTCTCGCTGTACCAC+CGG | + | tig0012573:809-828 | Msa1352090:intergenic | 55.0% | |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | - | tig0012573:838-857 | Msa1352090:CDS | 55.0% |
| CTCTCCGCGTTCCTTAGCAA+TGG | + | tig0012573:1125-1144 | Msa1352090:intergenic | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | - | tig0012573:1138-1157 | Msa1352090:intron | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | - | tig0012573:1399-1418 | Msa1352090:intron | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | + | tig0012573:1405-1424 | Msa1352090:intergenic | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | + | tig0012573:1416-1435 | Msa1352090:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | - | tig0012573:1422-1441 | Msa1352090:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | - | tig0012573:1880-1899 | Msa1352090:CDS | 55.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | + | tig0012573:12-31 | Msa1341110:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | + | tig0012573:46-65 | Msa1352090:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | + | tig0012573:58-77 | Msa1352090:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | + | tig0012573:71-90 | Msa1352090:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | + | tig0012573:74-93 | Msa1352090:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | - | tig0012573:206-225 | Msa1352090:intron | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | + | tig0012573:351-370 | Msa1352090:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | - | tig0012573:389-408 | Msa1352090:intron | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | + | tig0012573:420-439 | Msa1352090:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | - | tig0012573:808-827 | Msa1352090:CDS | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | - | tig0012573:811-830 | Msa1352090:CDS | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | - | tig0012573:837-856 | Msa1352090:CDS | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | - | tig0012573:850-869 | Msa1352090:CDS | 60.0% | |
| TACTTGGGAGGTAGCCGTGG+TGG | - | tig0012573:853-872 | Msa1352090:CDS | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | + | tig0012573:1034-1053 | Msa1352090:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | - | tig0012573:1384-1403 | Msa1352090:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | - | tig0012573:1385-1404 | Msa1352090:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | + | tig0012573:1389-1408 | Msa1352090:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | - | tig0012573:1398-1417 | Msa1352090:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | - | tig0012573:1421-1440 | Msa1352090:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | + | tig0012573:1427-1446 | Msa1352090:intergenic | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | + | tig0012573:12-31 | Msa1352090:intergenic | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | + | tig0012573:46-65 | Msa1352090:intergenic | 60.0% |
| GGAGAGGTGGAGCTGTTGGT+AGG | + | tig0012573:58-77 | Msa1352090:intergenic | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | + | tig0012573:71-90 | Msa1352090:intergenic | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | + | tig0012573:74-93 | Msa1352090:intergenic | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | - | tig0012573:206-225 | Msa1352090:intron | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | + | tig0012573:351-370 | Msa1352090:intergenic | 60.0% | |
| AAACGCCGGGGTCTTCTCTC+TGG | - | tig0012573:389-408 | Msa1352090:intron | 60.0% | |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | + | tig0012573:420-439 | Msa1352090:intergenic | 60.0% |
| GGTGGTACAGCGAGAGAAGG+AGG | - | tig0012573:808-827 | Msa1352090:CDS | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | - | tig0012573:811-830 | Msa1352090:CDS | 60.0% | |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | - | tig0012573:837-856 | Msa1352090:CDS | 60.0% |
| GAGTACTTGGGAGGTAGCCG+TGG | - | tig0012573:850-869 | Msa1352090:CDS | 60.0% | |
| TACTTGGGAGGTAGCCGTGG+TGG | - | tig0012573:853-872 | Msa1352090:CDS | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | + | tig0012573:1034-1053 | Msa1352090:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | - | tig0012573:1384-1403 | Msa1352090:intron | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | - | tig0012573:1385-1404 | Msa1352090:intron | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | + | tig0012573:1389-1408 | Msa1352090:intergenic | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | - | tig0012573:1398-1417 | Msa1352090:intron | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | - | tig0012573:1421-1440 | Msa1352090:intron | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | + | tig0012573:1427-1446 | Msa1352090:intergenic | 60.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | + | tig0012573:11-30 | Msa1341110:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | + | tig0012573:47-66 | Msa1352090:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | + | tig0012573:62-81 | Msa1352090:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | - | tig0012573:790-809 | Msa1352090:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | - | tig0012573:805-824 | Msa1352090:CDS | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | - | tig0012573:814-833 | Msa1352090:CDS | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | - | tig0012573:815-834 | Msa1352090:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | - | tig0012573:821-840 | Msa1352090:CDS | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | - | tig0012573:841-860 | Msa1352090:CDS | 65.0% |
| TTGGGAGGTAGCCGTGGTGG+AGG | - | tig0012573:856-875 | Msa1352090:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | - | tig0012573:1028-1047 | Msa1352090:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | + | tig0012573:11-30 | Msa1352090:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | + | tig0012573:47-66 | Msa1352090:intergenic | 65.0% |
| GGACGGAGAGGTGGAGCTGT+TGG | + | tig0012573:62-81 | Msa1352090:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | - | tig0012573:790-809 | Msa1352090:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | - | tig0012573:805-824 | Msa1352090:CDS | 65.0% | |
| ACAGCGAGAGAAGGAGGCGG+TGG | - | tig0012573:814-833 | Msa1352090:CDS | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | - | tig0012573:815-834 | Msa1352090:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | - | tig0012573:821-840 | Msa1352090:CDS | 65.0% | |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | - | tig0012573:841-860 | Msa1352090:CDS | 65.0% |
| TTGGGAGGTAGCCGTGGTGG+AGG | - | tig0012573:856-875 | Msa1352090:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | - | tig0012573:1028-1047 | Msa1352090:CDS | 65.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | - | tig0012573:824-843 | Msa1352090:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | - | tig0012573:828-847 | Msa1352090:CDS | 70.0% | |
| AAGGAGGCGGTGGGAAGCGG+AGG | - | tig0012573:824-843 | Msa1352090:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | - | tig0012573:828-847 | Msa1352090:CDS | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | - | tig0012573:827-846 | Msa1352090:CDS | 75.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | - | tig0012573:827-846 | Msa1352090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012573 | gene | 2 | 1944 | 2 | ID=Msa1352090;Name=Msa1352090 |
| tig0012573 | mRNA | 2 | 1944 | 2 | ID=Msa1352090-mRNA-1;Parent=Msa1352090;Name=Msa1352090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0|1|1|1|3|0|342 |
| tig0012573 | exon | 1497 | 1944 | 1497 | ID=Msa1352090-mRNA-1:exon:7985;Parent=Msa1352090-mRNA-1 |
| tig0012573 | exon | 787 | 1154 | 787 | ID=Msa1352090-mRNA-1:exon:7984;Parent=Msa1352090-mRNA-1 |
| tig0012573 | exon | 2 | 211 | 2 | ID=Msa1352090-mRNA-1:exon:7983;Parent=Msa1352090-mRNA-1 |
| tig0012573 | CDS | 1497 | 1944 | 1497 | ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1 |
| tig0012573 | CDS | 787 | 1154 | 787 | ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1 |
| tig0012573 | CDS | 2 | 211 | 2 | ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
