AlfalfaGEDB | Msa1352090

M. sativa cultivar zhongmu-4 / Msa1352090

KEGG: -
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010476 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0031490 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01698.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352090	AEO16611.1	100.000	342	0	0	1	342	1	342	0.0	706

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352090	sp\|O48559\|UNI_PEA	95.376	346	11	2	1	342	1	345	0.0	669

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352090	G3FCS7	100.000	342	0	0	1	342	1	342	0.0	706

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TFs/TRs:

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Gene ID	Type	Classification
Msa1352090	TF	LFY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0519050	Msa1352090	0.937696	2.275563e-98	-8.615850e-47
Msa0981400	Msa1352090	0.844125	9.172120e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352090	MtrunA17_Chr3g0131591	99.708	342	1	0	1	342	1	342	0.0	704

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1352090	AT5G61850.1	64.167	360	105	7	1	342	1	354	8.72e-133	385
Msa1352090	AT5G61850.2	63.462	364	105	8	1	342	1	358	2.81e-130	379

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Find 100 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGCCGGGGTCTTCTCTC+TGG	0.419881	tig0012573:-1535	Msa1352090:CDS
AAGAAGATAACATCAGTGGT+GGG	0.574442	tig0012573:-955	Msa1352090:CDS
AAGAGAACTTGGAGGGTTGG+AGG	0.545242	tig0012573:-1776	Msa1352090:CDS
AAGCGGAGGAGGGAGTACTT+GGG	0.624155	tig0012573:-1086	Msa1352090:CDS
AAGCTGCCATTAGGGCTGAA+CGG	0.643172	tig0012573:-1582	Msa1352090:CDS
AAGGAGAAGGATGAAGATGA+AGG	0.477090	tig0012573:-1020	Msa1352090:CDS
AAGGAGGCGGTGGGAAGCGG+AGG	0.424426	tig0012573:-1100	Msa1352090:CDS
ACAGCGAGAGAAGGAGGCGG+TGG	0.487501	tig0012573:-1110	Msa1352090:CDS
ACCAAGAGAACTTGGAGGGT+TGG	0.520875	tig0012573:-1779	Msa1352090:CDS
ACGGAGACGCCTTGATGAAG+AGG	0.562424	tig0012573:-1563	Msa1352090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTAGGTATGCAAAAAAAGC+TGG	-	tig0012573:1750-1769	Msa1352090:CDS	30.0%
ATTGCATTGTTTAGATGAAG+AGG	-	tig0012573:1824-1843	Msa1352090:CDS	30.0%
TTTAGGTATGCAAAAAAAGC+TGG	-	tig0012573:1750-1769	Msa1352090:CDS	30.0%
ATTGCATTGTTTAGATGAAG+AGG	-	tig0012573:1824-1843	Msa1352090:CDS	30.0%
AGTATCTGATTCCATAAGCT+TGG	+	tig0012573:181-200	Msa1352090:intergenic	35.0%
ATGAAGAGGAAATTAAACGC+CGG	-	tig0012573:375-394	Msa1352090:intron	35.0%
TCTTAATTAAGGTTTGTCGG+AGG	-	tig0012573:781-800	Msa1352090:intron	35.0%
AAGAAGATAACATCAGTGGT+GGG	-	tig0012573:969-988	Msa1352090:CDS	35.0%
TGGTATAGTATACCTTGGTA+GGG	+	tig0012573:1153-1172	Msa1352090:intergenic	35.0%
ATGGTATAGTATACCTTGGT+AGG	+	tig0012573:1154-1173	Msa1352090:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0012573	gene	2	1944	2	ID=Msa1352090;Name=Msa1352090
tig0012573	mRNA	2	1944	2	ID=Msa1352090-mRNA-1;Parent=Msa1352090;Name=Msa1352090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|342
tig0012573	exon	1497	1944	1497	ID=Msa1352090-mRNA-1:exon:7985;Parent=Msa1352090-mRNA-1
tig0012573	exon	787	1154	787	ID=Msa1352090-mRNA-1:exon:7984;Parent=Msa1352090-mRNA-1
tig0012573	exon	2	211	2	ID=Msa1352090-mRNA-1:exon:7983;Parent=Msa1352090-mRNA-1
tig0012573	CDS	1497	1944	1497	ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1
tig0012573	CDS	787	1154	787	ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1
tig0012573	CDS	2	211	2	ID=Msa1352090-mRNA-1:cds;Parent=Msa1352090-mRNA-1

Gene Sequence

>Msa1352090

ATGGATCCCGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTACCAACAGCTCCACCTCTCCGTCCCCAACTTCTCGACTACGCAGTCACTCCTTCAACTGCTCCGTCACCTTATTACCCAGCAAGGTTACCAAGAGAACTTGGAGGGTTGGAGGAACTTTTCCAAGCTTATGGAATCAGATACTACACTGCGGCGAAGATAGCAGAGCTTGGTTTTACAGTGAGCACGTTGGTGGACATGAAGGATGATGAGCTTGATGACATGATGAACAGCCTCTCGCAGATTTTTCGTTGGGATCTTCTCGTTGGAGAACGTTACGGCATCAAAGCTGCCATTAGGGCTGAACGGAGACGCCTTGATGAAGAGGAAATTAAACGCCGGGGTCTTCTCTCTGGTGATACCACCAACGCTCTTGACGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTACAGCGAGAGAAGGAGGCGGTGGGAAGCGGAGGAGGGAGTACTTGGGAGGTAGCCGTGGTGGAGGAGAGAAGAAAGAGGCAGCAAATAAGAAGGAGAAGGATGAAGATGAAGGGGACTGGTGATCATGGTGAGAATGAAGAAGGAGATGAGGAGGAAGAAGATAACATCAGTGGTGGGGGTGAGAGACAAAGAGAACATCCATTCATTGTGACAGAGCCTGGGGAAGTTGCACGTGGCAAAAAGAACGGTCTGGATTATCTGTTTCATCTCTATGAACAATGTCGTGAGTTCTTGATTCAGGTTCAAGCCATTGCTAAGGAACGCGGAGAGAAATGCCCTACCAAGGTGACAAATCAGGTATTTAGGTATGCAAAAAAAGCTGGAGCAAGCTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGTTATGCATTGCATTGTTTAGATGAAGAGGTATCAAATGAGCTGAGAAGAGGGTTTAAGGAAAGAGGAGAGAACGTTGGTGCATGGAGACAAGCTTGTTACAAGCCACTTGTAGCAATAGCTGCACGT

Protein sequence

>Msa1352090

MDPDAFTASLFKWDPRTVLPTAPPLRPQLLDYAVTPSTAPSPYYPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEIKRRGLLSGDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGTGDHGENEEGDEEEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAAR