Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519630 | XP_024636018.1 | 95.522 | 67 | 3 | 0 | 2 | 68 | 252 | 318 | 1.30e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519630 | A0A072V1G5 | 98.333 | 60 | 1 | 0 | 2 | 61 | 252 | 311 | 1.13e-31 | 121 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0519440 | Msa0519630 | 0.843541 | 1.315165e-58 | -8.615850e-47 |
| Msa0519450 | Msa0519630 | 0.842284 | 2.840489e-58 | -8.615850e-47 |
| Msa0519520 | Msa0519630 | 0.842209 | 2.973240e-58 | -8.615850e-47 |
| Msa0519630 | Msa1455720 | 0.830097 | 3.557720e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519630 | MtrunA17_Chr3g0135051 | 95.082 | 61 | 3 | 0 | 2 | 62 | 252 | 312 | 2.62e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519630 | AT1G59520.5 | 79.310 | 58 | 12 | 0 | 2 | 59 | 246 | 303 | 1.74e-29 | 106 |
| Msa0519630 | AT1G59520.2 | 78.333 | 60 | 13 | 0 | 2 | 61 | 246 | 305 | 4.69e-28 | 102 |
| Msa0519630 | AT1G59520.6 | 78.333 | 60 | 13 | 0 | 2 | 61 | 246 | 305 | 4.69e-28 | 102 |
| Msa0519630 | AT1G59520.1 | 75.410 | 61 | 15 | 0 | 2 | 62 | 246 | 306 | 3.89e-27 | 101 |
| Msa0519630 | AT1G59520.3 | 75.410 | 61 | 15 | 0 | 2 | 62 | 246 | 306 | 4.09e-27 | 100 |
| Msa0519630 | AT1G59520.4 | 75.410 | 61 | 15 | 0 | 2 | 62 | 246 | 306 | 4.17e-27 | 101 |
Find 31 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTGAATTTCTATATTAT+AGG | 0.249643 | 3_4:-71936322 | Msa0519630:three_prime_UTR |
| GAAGTTGAAGTAGCTGTTTC+TGG | 0.265731 | 3_4:-71936411 | Msa0519630:CDS |
| CAAAATGGCCTACTGATAAA+AGG | 0.310370 | 3_4:+71936481 | None:intergenic |
| GTAGCTGTTTCTGGTGTTGC+AGG | 0.340437 | 3_4:-71936402 | Msa0519630:CDS |
| AGTGATGAATGCTAACTATT+AGG | 0.343735 | 3_4:+71936161 | None:intergenic |
| GCAGCTGGAAAATCTCGATT+TGG | 0.343845 | 3_4:-71936507 | Msa0519630:intron |
| CCACTTATAAACATATCTTT+AGG | 0.366574 | 3_4:+71936241 | None:intergenic |
| AGCTGACAAATCCTGAGAAA+AGG | 0.409057 | 3_4:+71937269 | None:intergenic |
| CCTAAAGATATGTTTATAAG+TGG | 0.410848 | 3_4:-71936241 | Msa0519630:three_prime_UTR |
| CAGCTGGAAAATCTCGATTT+GGG | 0.430720 | 3_4:-71936506 | Msa0519630:CDS |
| ATGAAAGGTCCTGGAGGCCG+TGG | 0.451224 | 3_4:-71936435 | Msa0519630:CDS |
| TCCTTACAAAACCGCTTGTA+AGG | 0.455008 | 3_4:+71936206 | None:intergenic |
| TCCTATAATATAGAAATTCA+AGG | 0.460577 | 3_4:+71936321 | None:intergenic |
| TCAACTTCCCCACGGCCTCC+AGG | 0.473656 | 3_4:+71936426 | None:intergenic |
| GCTGACAAATCCTGAGAAAA+GGG | 0.483603 | 3_4:+71937270 | None:intergenic |
| AGGATTTACATGAAAGGTCC+TGG | 0.502487 | 3_4:-71936444 | Msa0519630:CDS |
| CTGTTTCTGGTGTTGCAGGT+AGG | 0.533458 | 3_4:-71936398 | Msa0519630:CDS |
| CTAAAGATATGTTTATAAGT+GGG | 0.541227 | 3_4:-71936240 | Msa0519630:three_prime_UTR |
| TAAAGATATGTTTATAAGTG+GGG | 0.568572 | 3_4:-71936239 | Msa0519630:three_prime_UTR |
| AGGATTTGTCAGCTATCAGA+TGG | 0.572507 | 3_4:-71937260 | Msa0519630:CDS |
| GTCTCACATTGGATGAGAGA+TGG | 0.580006 | 3_4:-71936264 | Msa0519630:three_prime_UTR |
| ATGGTTAGAGATGCATATGA+TGG | 0.581139 | 3_4:-71937241 | Msa0519630:intron |
| TGAAAGGTCCTGGAGGCCGT+GGG | 0.586284 | 3_4:-71936434 | Msa0519630:CDS |
| GGCAATCCTCACCTTACAAG+CGG | 0.606255 | 3_4:-71936217 | Msa0519630:three_prime_UTR |
| ACAGATAGGATTTACATGAA+AGG | 0.606780 | 3_4:-71936450 | Msa0519630:CDS |
| AAAGATATGTTTATAAGTGG+GGG | 0.607391 | 3_4:-71936238 | Msa0519630:three_prime_UTR |
| ACAAAACCGCTTGTAAGGTG+AGG | 0.624272 | 3_4:+71936211 | None:intergenic |
| TAGTGTTAAGAGTCTCACAT+TGG | 0.639499 | 3_4:-71936275 | Msa0519630:three_prime_UTR |
| CAGCTACTTCAACTTCCCCA+CGG | 0.670491 | 3_4:+71936418 | None:intergenic |
| GAAAGGTCCTGGAGGCCGTG+GGG | 0.683313 | 3_4:-71936433 | Msa0519630:CDS |
| ATTTACATGAAAGGTCCTGG+AGG | 0.761883 | 3_4:-71936441 | Msa0519630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAATATCTAGATAGA+GGG | + | chr3_4:71936329-71936348 | None:intergenic | 20.0% |
| !! | CGTAATATATACAATACATT+TGG | + | chr3_4:71936928-71936947 | None:intergenic | 20.0% |
| !! | ACCTTGAATTTCTATATTAT+AGG | - | chr3_4:71937205-71937224 | Msa0519630:intron | 20.0% |
| !! | TCCTATAATATAGAAATTCA+AGG | + | chr3_4:71937209-71937228 | None:intergenic | 20.0% |
| !! | CTAAAGATATGTTTATAAGT+GGG | - | chr3_4:71937287-71937306 | Msa0519630:intron | 20.0% |
| !! | TAAAGATATGTTTATAAGTG+GGG | - | chr3_4:71937288-71937307 | Msa0519630:intron | 20.0% |
| !! | AAAACAAATATCTAGATAGA+GGG | + | chr3_4:71936329-71936348 | None:intergenic | 20.0% |
| !! | CGTAATATATACAATACATT+TGG | + | chr3_4:71936928-71936947 | None:intergenic | 20.0% |
| !! | ACCTTGAATTTCTATATTAT+AGG | - | chr3_4:71937205-71937224 | Msa0519630:intron | 20.0% |
| !! | TCCTATAATATAGAAATTCA+AGG | + | chr3_4:71937209-71937228 | None:intergenic | 20.0% |
| !! | CTAAAGATATGTTTATAAGT+GGG | - | chr3_4:71937287-71937306 | Msa0519630:intron | 20.0% |
| !! | TAAAGATATGTTTATAAGTG+GGG | - | chr3_4:71937288-71937307 | Msa0519630:intron | 20.0% |
| ! | CAAAACAAATATCTAGATAG+AGG | + | chr3_4:71936330-71936349 | None:intergenic | 25.0% |
| ! | TATCTACAGAATGAATGATT+TGG | - | chr3_4:71936380-71936399 | Msa0519630:CDS | 25.0% |
| !!! | TCGTATATTTTGAAACATTC+TGG | + | chr3_4:71936439-71936458 | None:intergenic | 25.0% |
| ! | AGAATGTTTCAAAATATACG+AGG | - | chr3_4:71936438-71936457 | Msa0519630:CDS | 25.0% |
| !! | TTGAATTGATGTCATTTCTT+TGG | - | chr3_4:71936481-71936500 | Msa0519630:CDS | 25.0% |
| ! | CCACTTATAAACATATCTTT+AGG | + | chr3_4:71937289-71937308 | None:intergenic | 25.0% |
| ! | CCTAAAGATATGTTTATAAG+TGG | - | chr3_4:71937286-71937305 | Msa0519630:intron | 25.0% |
| ! | AAAGATATGTTTATAAGTGG+GGG | - | chr3_4:71937289-71937308 | Msa0519630:intron | 25.0% |
| !! | AACTATTAGGCTTTTATAGA+GGG | + | chr3_4:71937356-71937375 | None:intergenic | 25.0% |
| ! | CAAAACAAATATCTAGATAG+AGG | + | chr3_4:71936330-71936349 | None:intergenic | 25.0% |
| ! | TATCTACAGAATGAATGATT+TGG | - | chr3_4:71936380-71936399 | Msa0519630:CDS | 25.0% |
| !!! | TCGTATATTTTGAAACATTC+TGG | + | chr3_4:71936439-71936458 | None:intergenic | 25.0% |
| ! | AGAATGTTTCAAAATATACG+AGG | - | chr3_4:71936438-71936457 | Msa0519630:CDS | 25.0% |
| !! | TTGAATTGATGTCATTTCTT+TGG | - | chr3_4:71936481-71936500 | Msa0519630:CDS | 25.0% |
| ! | CCACTTATAAACATATCTTT+AGG | + | chr3_4:71937289-71937308 | None:intergenic | 25.0% |
| ! | CCTAAAGATATGTTTATAAG+TGG | - | chr3_4:71937286-71937305 | Msa0519630:intron | 25.0% |
| ! | AAAGATATGTTTATAAGTGG+GGG | - | chr3_4:71937289-71937308 | Msa0519630:intron | 25.0% |
| !! | AACTATTAGGCTTTTATAGA+GGG | + | chr3_4:71937356-71937375 | None:intergenic | 25.0% |
| GAATCAGAATGTCTAAACAT+CGG | + | chr3_4:71936212-71936231 | None:intergenic | 30.0% | |
| ATGACATCAATTCAAGATCA+GGG | + | chr3_4:71936476-71936495 | None:intergenic | 30.0% | |
| AATGACATCAATTCAAGATC+AGG | + | chr3_4:71936477-71936496 | None:intergenic | 30.0% | |
| ! | AACCATTTTGTGACAACTTT+TGG | - | chr3_4:71936569-71936588 | Msa0519630:intron | 30.0% |
| TTCTCTTTCTCTCTTCTTAT+TGG | + | chr3_4:71936663-71936682 | None:intergenic | 30.0% | |
| AATAAGAAGAGAGAAAGAGA+AGG | - | chr3_4:71936662-71936681 | Msa0519630:intron | 30.0% | |
| TCTCAAAAGTTGTCACAAAA+TGG | - | chr3_4:71936688-71936707 | Msa0519630:intron | 30.0% | |
| GTAAAGGCAATAAAGAGTTA+CGG | + | chr3_4:71936893-71936912 | None:intergenic | 30.0% | |
| AACTCTTTATTGCCTTTACA+CGG | - | chr3_4:71936894-71936913 | Msa0519630:intron | 30.0% | |
| ACAGATAGGATTTACATGAA+AGG | - | chr3_4:71937077-71937096 | Msa0519630:intron | 30.0% | |
| GAATCAGAATGTCTAAACAT+CGG | + | chr3_4:71936212-71936231 | None:intergenic | 30.0% | |
| ATGACATCAATTCAAGATCA+GGG | + | chr3_4:71936476-71936495 | None:intergenic | 30.0% | |
| AATGACATCAATTCAAGATC+AGG | + | chr3_4:71936477-71936496 | None:intergenic | 30.0% | |
| ! | AACCATTTTGTGACAACTTT+TGG | - | chr3_4:71936569-71936588 | Msa0519630:intron | 30.0% |
| TTCTCTTTCTCTCTTCTTAT+TGG | + | chr3_4:71936663-71936682 | None:intergenic | 30.0% | |
| AATAAGAAGAGAGAAAGAGA+AGG | - | chr3_4:71936662-71936681 | Msa0519630:intron | 30.0% | |
| TCTCAAAAGTTGTCACAAAA+TGG | - | chr3_4:71936688-71936707 | Msa0519630:intron | 30.0% | |
| GTAAAGGCAATAAAGAGTTA+CGG | + | chr3_4:71936893-71936912 | None:intergenic | 30.0% | |
| AACTCTTTATTGCCTTTACA+CGG | - | chr3_4:71936894-71936913 | Msa0519630:intron | 30.0% | |
| ACAGATAGGATTTACATGAA+AGG | - | chr3_4:71937077-71937096 | Msa0519630:intron | 30.0% | |
| GTTTAGACATTCTGATTCTC+TGG | - | chr3_4:71936214-71936233 | Msa0519630:three_prime_UTR | 35.0% | |
| ATGGTTAGAGATGCATATGA+TGG | - | chr3_4:71936286-71936305 | Msa0519630:three_prime_UTR | 35.0% | |
| ATCTAGATAGAGGGAATTGT+AGG | + | chr3_4:71936320-71936339 | None:intergenic | 35.0% | |
| CTTTCACAACTCATCAACTA+TGG | - | chr3_4:71936515-71936534 | Msa0519630:intron | 35.0% | |
| GACCAAAAGTTGTCACAAAA+TGG | + | chr3_4:71936574-71936593 | None:intergenic | 35.0% | |
| !! | AACTGAGTATGTGGTTTTAC+AGG | + | chr3_4:71936753-71936772 | None:intergenic | 35.0% |
| TCATAGCATAACTGAGTATG+TGG | + | chr3_4:71936762-71936781 | None:intergenic | 35.0% | |
| AAAGAGTTACGGTGAATTGA+GGG | + | chr3_4:71936882-71936901 | None:intergenic | 35.0% | |
| TAAAGAGTTACGGTGAATTG+AGG | + | chr3_4:71936883-71936902 | None:intergenic | 35.0% | |
| GACAACACATATATGGTTCA+TGG | + | chr3_4:71936964-71936983 | None:intergenic | 35.0% | |
| CAGCTGCAATGCAATAAAAA+GGG | + | chr3_4:71937007-71937026 | None:intergenic | 35.0% | |
| CAAAATGGCCTACTGATAAA+AGG | + | chr3_4:71937049-71937068 | None:intergenic | 35.0% | |
| ! | TATCTGTTTTGCCAGCAAAA+TGG | + | chr3_4:71937064-71937083 | None:intergenic | 35.0% |
| ! | ATTTTGCTGGCAAAACAGAT+AGG | - | chr3_4:71937063-71937082 | Msa0519630:intron | 35.0% |
| TAGTGTTAAGAGTCTCACAT+TGG | - | chr3_4:71937252-71937271 | Msa0519630:CDS | 35.0% | |
| GTTTAGACATTCTGATTCTC+TGG | - | chr3_4:71936214-71936233 | Msa0519630:three_prime_UTR | 35.0% | |
| ATGGTTAGAGATGCATATGA+TGG | - | chr3_4:71936286-71936305 | Msa0519630:three_prime_UTR | 35.0% | |
| ATCTAGATAGAGGGAATTGT+AGG | + | chr3_4:71936320-71936339 | None:intergenic | 35.0% | |
| CTTTCACAACTCATCAACTA+TGG | - | chr3_4:71936515-71936534 | Msa0519630:intron | 35.0% | |
| GACCAAAAGTTGTCACAAAA+TGG | + | chr3_4:71936574-71936593 | None:intergenic | 35.0% | |
| !! | AACTGAGTATGTGGTTTTAC+AGG | + | chr3_4:71936753-71936772 | None:intergenic | 35.0% |
| TCATAGCATAACTGAGTATG+TGG | + | chr3_4:71936762-71936781 | None:intergenic | 35.0% | |
| AAAGAGTTACGGTGAATTGA+GGG | + | chr3_4:71936882-71936901 | None:intergenic | 35.0% | |
| TAAAGAGTTACGGTGAATTG+AGG | + | chr3_4:71936883-71936902 | None:intergenic | 35.0% | |
| GACAACACATATATGGTTCA+TGG | + | chr3_4:71936964-71936983 | None:intergenic | 35.0% | |
| CAGCTGCAATGCAATAAAAA+GGG | + | chr3_4:71937007-71937026 | None:intergenic | 35.0% | |
| CAAAATGGCCTACTGATAAA+AGG | + | chr3_4:71937049-71937068 | None:intergenic | 35.0% | |
| ! | TATCTGTTTTGCCAGCAAAA+TGG | + | chr3_4:71937064-71937083 | None:intergenic | 35.0% |
| ! | ATTTTGCTGGCAAAACAGAT+AGG | - | chr3_4:71937063-71937082 | Msa0519630:intron | 35.0% |
| TAGTGTTAAGAGTCTCACAT+TGG | - | chr3_4:71937252-71937271 | Msa0519630:CDS | 35.0% | |
| ! | GATTCTCTGGTTTCTCTGAT+TGG | - | chr3_4:71936227-71936246 | Msa0519630:three_prime_UTR | 40.0% |
| GCTGACAAATCCTGAGAAAA+GGG | + | chr3_4:71936260-71936279 | None:intergenic | 40.0% | |
| AGCTGACAAATCCTGAGAAA+AGG | + | chr3_4:71936261-71936280 | None:intergenic | 40.0% | |
| AGGATTTGTCAGCTATCAGA+TGG | - | chr3_4:71936267-71936286 | Msa0519630:three_prime_UTR | 40.0% | |
| ATGAGTTGTGAAAGTTTCGC+AGG | + | chr3_4:71936509-71936528 | None:intergenic | 40.0% | |
| !! | AGTATGTGGTTTTACAGGCA+AGG | + | chr3_4:71936748-71936767 | None:intergenic | 40.0% |
| TTGGAAGTTTCACCGTGTAA+AGG | + | chr3_4:71936909-71936928 | None:intergenic | 40.0% | |
| CCAGTGAGACAACACATATA+TGG | + | chr3_4:71936971-71936990 | None:intergenic | 40.0% | |
| CCATATATGTGTTGTCTCAC+TGG | - | chr3_4:71936968-71936987 | Msa0519630:intron | 40.0% | |
| CCAGCTGCAATGCAATAAAA+AGG | + | chr3_4:71937008-71937027 | None:intergenic | 40.0% | |
| ! | CCTTTTTATTGCATTGCAGC+TGG | - | chr3_4:71937005-71937024 | Msa0519630:intron | 40.0% |
| CAGCTGGAAAATCTCGATTT+GGG | - | chr3_4:71937021-71937040 | Msa0519630:intron | 40.0% | |
| ! | TTTGGGAGCCTTTTATCAGT+AGG | - | chr3_4:71937038-71937057 | Msa0519630:intron | 40.0% |
| !! | TTATCAGTAGGCCATTTTGC+TGG | - | chr3_4:71937050-71937069 | Msa0519630:intron | 40.0% |
| AGGATTTACATGAAAGGTCC+TGG | - | chr3_4:71937083-71937102 | Msa0519630:intron | 40.0% | |
| ATTTACATGAAAGGTCCTGG+AGG | - | chr3_4:71937086-71937105 | Msa0519630:intron | 40.0% | |
| ! | GAAGTTGAAGTAGCTGTTTC+TGG | - | chr3_4:71937116-71937135 | Msa0519630:intron | 40.0% |
| !!! | TAGGCAACTTTTTCGTAGGT+GGG | - | chr3_4:71937148-71937167 | Msa0519630:intron | 40.0% |
| !! | ACCTTACAAGCGGTTTTGTA+AGG | - | chr3_4:71937320-71937339 | Msa0519630:intron | 40.0% |
| TCCTTACAAAACCGCTTGTA+AGG | + | chr3_4:71937324-71937343 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+GGG | - | chr3_4:71937330-71937349 | Msa0519630:intron | 40.0% |
| ! | GATTCTCTGGTTTCTCTGAT+TGG | - | chr3_4:71936227-71936246 | Msa0519630:three_prime_UTR | 40.0% |
| GCTGACAAATCCTGAGAAAA+GGG | + | chr3_4:71936260-71936279 | None:intergenic | 40.0% | |
| AGCTGACAAATCCTGAGAAA+AGG | + | chr3_4:71936261-71936280 | None:intergenic | 40.0% | |
| AGGATTTGTCAGCTATCAGA+TGG | - | chr3_4:71936267-71936286 | Msa0519630:three_prime_UTR | 40.0% | |
| ATGAGTTGTGAAAGTTTCGC+AGG | + | chr3_4:71936509-71936528 | None:intergenic | 40.0% | |
| !! | AGTATGTGGTTTTACAGGCA+AGG | + | chr3_4:71936748-71936767 | None:intergenic | 40.0% |
| TTGGAAGTTTCACCGTGTAA+AGG | + | chr3_4:71936909-71936928 | None:intergenic | 40.0% | |
| CCAGTGAGACAACACATATA+TGG | + | chr3_4:71936971-71936990 | None:intergenic | 40.0% | |
| CCATATATGTGTTGTCTCAC+TGG | - | chr3_4:71936968-71936987 | Msa0519630:intron | 40.0% | |
| CCAGCTGCAATGCAATAAAA+AGG | + | chr3_4:71937008-71937027 | None:intergenic | 40.0% | |
| ! | CCTTTTTATTGCATTGCAGC+TGG | - | chr3_4:71937005-71937024 | Msa0519630:intron | 40.0% |
| CAGCTGGAAAATCTCGATTT+GGG | - | chr3_4:71937021-71937040 | Msa0519630:intron | 40.0% | |
| ! | TTTGGGAGCCTTTTATCAGT+AGG | - | chr3_4:71937038-71937057 | Msa0519630:intron | 40.0% |
| !! | TTATCAGTAGGCCATTTTGC+TGG | - | chr3_4:71937050-71937069 | Msa0519630:intron | 40.0% |
| AGGATTTACATGAAAGGTCC+TGG | - | chr3_4:71937083-71937102 | Msa0519630:intron | 40.0% | |
| ATTTACATGAAAGGTCCTGG+AGG | - | chr3_4:71937086-71937105 | Msa0519630:intron | 40.0% | |
| ! | GAAGTTGAAGTAGCTGTTTC+TGG | - | chr3_4:71937116-71937135 | Msa0519630:intron | 40.0% |
| !!! | TAGGCAACTTTTTCGTAGGT+GGG | - | chr3_4:71937148-71937167 | Msa0519630:intron | 40.0% |
| !! | ACCTTACAAGCGGTTTTGTA+AGG | - | chr3_4:71937320-71937339 | Msa0519630:intron | 40.0% |
| TCCTTACAAAACCGCTTGTA+AGG | + | chr3_4:71937324-71937343 | None:intergenic | 40.0% | |
| !! | CGGTTTTGTAAGGATGAGTT+GGG | - | chr3_4:71937330-71937349 | Msa0519630:intron | 40.0% |
| GCAGCTGGAAAATCTCGATT+TGG | - | chr3_4:71937020-71937039 | Msa0519630:intron | 45.0% | |
| !!! | CAGGTAGGCAACTTTTTCGT+AGG | - | chr3_4:71937144-71937163 | Msa0519630:intron | 45.0% |
| !!! | GTAGGCAACTTTTTCGTAGG+TGG | - | chr3_4:71937147-71937166 | Msa0519630:intron | 45.0% |
| GTCTCACATTGGATGAGAGA+TGG | - | chr3_4:71937263-71937282 | Msa0519630:CDS | 45.0% | |
| ACAAAACCGCTTGTAAGGTG+AGG | + | chr3_4:71937319-71937338 | None:intergenic | 45.0% | |
| !! | GCGGTTTTGTAAGGATGAGT+TGG | - | chr3_4:71937329-71937348 | Msa0519630:intron | 45.0% |
| GCAGCTGGAAAATCTCGATT+TGG | - | chr3_4:71937020-71937039 | Msa0519630:intron | 45.0% | |
| !!! | CAGGTAGGCAACTTTTTCGT+AGG | - | chr3_4:71937144-71937163 | Msa0519630:intron | 45.0% |
| !!! | GTAGGCAACTTTTTCGTAGG+TGG | - | chr3_4:71937147-71937166 | Msa0519630:intron | 45.0% |
| GTCTCACATTGGATGAGAGA+TGG | - | chr3_4:71937263-71937282 | Msa0519630:CDS | 45.0% | |
| ACAAAACCGCTTGTAAGGTG+AGG | + | chr3_4:71937319-71937338 | None:intergenic | 45.0% | |
| !! | GCGGTTTTGTAAGGATGAGT+TGG | - | chr3_4:71937329-71937348 | Msa0519630:intron | 45.0% |
| ! | TGGCAGCTTACCCTTTTCTC+AGG | - | chr3_4:71936247-71936266 | Msa0519630:three_prime_UTR | 50.0% |
| CAGCTACTTCAACTTCCCCA+CGG | + | chr3_4:71937112-71937131 | None:intergenic | 50.0% | |
| !! | GTAGCTGTTTCTGGTGTTGC+AGG | - | chr3_4:71937125-71937144 | Msa0519630:intron | 50.0% |
| !! | CTGTTTCTGGTGTTGCAGGT+AGG | - | chr3_4:71937129-71937148 | Msa0519630:intron | 50.0% |
| GGCAATCCTCACCTTACAAG+CGG | - | chr3_4:71937310-71937329 | Msa0519630:intron | 50.0% | |
| ! | TGGCAGCTTACCCTTTTCTC+AGG | - | chr3_4:71936247-71936266 | Msa0519630:three_prime_UTR | 50.0% |
| CAGCTACTTCAACTTCCCCA+CGG | + | chr3_4:71937112-71937131 | None:intergenic | 50.0% | |
| !! | GTAGCTGTTTCTGGTGTTGC+AGG | - | chr3_4:71937125-71937144 | Msa0519630:intron | 50.0% |
| !! | CTGTTTCTGGTGTTGCAGGT+AGG | - | chr3_4:71937129-71937148 | Msa0519630:intron | 50.0% |
| GGCAATCCTCACCTTACAAG+CGG | - | chr3_4:71937310-71937329 | Msa0519630:intron | 50.0% | |
| ATGAAAGGTCCTGGAGGCCG+TGG | - | chr3_4:71937092-71937111 | Msa0519630:intron | 60.0% | |
| TGAAAGGTCCTGGAGGCCGT+GGG | - | chr3_4:71937093-71937112 | Msa0519630:intron | 60.0% | |
| ATGAAAGGTCCTGGAGGCCG+TGG | - | chr3_4:71937092-71937111 | Msa0519630:intron | 60.0% | |
| TGAAAGGTCCTGGAGGCCGT+GGG | - | chr3_4:71937093-71937112 | Msa0519630:intron | 60.0% | |
| GAAAGGTCCTGGAGGCCGTG+GGG | - | chr3_4:71937094-71937113 | Msa0519630:intron | 65.0% | |
| TCAACTTCCCCACGGCCTCC+AGG | + | chr3_4:71937104-71937123 | None:intergenic | 65.0% | |
| GAAAGGTCCTGGAGGCCGTG+GGG | - | chr3_4:71937094-71937113 | Msa0519630:intron | 65.0% | |
| TCAACTTCCCCACGGCCTCC+AGG | + | chr3_4:71937104-71937123 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 71936174 | 71937375 | 71936174 | ID=Msa0519630;Name=Msa0519630 |
| chr3_4 | mRNA | 71936174 | 71937375 | 71936174 | ID=Msa0519630-mRNA-1;Parent=Msa0519630;Name=Msa0519630-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.5|0.66|0.66|0.5|0.66|3|197|70 |
| chr3_4 | exon | 71936174 | 71936525 | 71936174 | ID=Msa0519630-mRNA-1:exon:19788;Parent=Msa0519630-mRNA-1 |
| chr3_4 | exon | 71937242 | 71937296 | 71937242 | ID=Msa0519630-mRNA-1:exon:19787;Parent=Msa0519630-mRNA-1 |
| chr3_4 | exon | 71937373 | 71937375 | 71937373 | ID=Msa0519630-mRNA-1:exon:19786;Parent=Msa0519630-mRNA-1 |
| chr3_4 | CDS | 71937373 | 71937375 | 71937373 | ID=Msa0519630-mRNA-1:cds;Parent=Msa0519630-mRNA-1 |
| chr3_4 | CDS | 71937242 | 71937296 | 71937242 | ID=Msa0519630-mRNA-1:cds;Parent=Msa0519630-mRNA-1 |
| chr3_4 | CDS | 71936371 | 71936525 | 71936371 | ID=Msa0519630-mRNA-1:cds;Parent=Msa0519630-mRNA-1 |
| chr3_4 | three_prime_UTR | 71936174 | 71936370 | 71936174 | ID=Msa0519630-mRNA-1:three_prime_utr;Parent=Msa0519630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
