Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521590 | XP_013461938.1 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521590 | sp|Q9LV21|TCPD_ARATH | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521590 | A0A072V3N8 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0521590 | Msa0532160 | 0.818381 | 2.019015e-52 | -8.615850e-47 |
| Msa0521590 | Msa0701890 | 0.813435 | 2.562964e-51 | -8.615850e-47 |
| Msa0521590 | Msa1387540 | 0.998253 | 5.580152e-260 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521590 | MtrunA17_Chr3g0139481 | 85.150 | 532 | 22 | 5 | 1 | 532 | 1 | 475 | 0.0 | 877 |
| Msa0521590 | MtrunA17_Chr8g0392171 | 77.524 | 307 | 32 | 6 | 194 | 495 | 1 | 275 | 1.53e-159 | 455 |
| Msa0521590 | MtrunA17_Chr3g0123341 | 37.500 | 512 | 307 | 7 | 24 | 530 | 28 | 531 | 1.27e-103 | 321 |
| Msa0521590 | MtrunA17_Chr7g0272821 | 34.816 | 517 | 318 | 7 | 20 | 530 | 14 | 517 | 2.44e-89 | 284 |
| Msa0521590 | MtrunA17_Chr7g0241881 | 35.029 | 511 | 313 | 7 | 26 | 530 | 20 | 517 | 1.40e-88 | 282 |
| Msa0521590 | MtrunA17_Chr8g0380331 | 34.476 | 525 | 316 | 9 | 24 | 529 | 19 | 534 | 8.06e-85 | 273 |
| Msa0521590 | MtrunA17_Chr5g0440381 | 32.877 | 511 | 323 | 8 | 28 | 529 | 27 | 526 | 2.02e-79 | 259 |
| Msa0521590 | MtrunA17_Chr2g0282161 | 30.528 | 511 | 344 | 7 | 25 | 530 | 20 | 524 | 5.89e-73 | 242 |
| Msa0521590 | MtrunA17_Chr6g0461541 | 28.571 | 511 | 351 | 5 | 23 | 529 | 20 | 520 | 5.84e-69 | 231 |
| Msa0521590 | MtrunA17_Chr1g0160221 | 27.626 | 514 | 358 | 5 | 23 | 532 | 23 | 526 | 1.16e-68 | 230 |
| Msa0521590 | MtrunA17_Chr7g0214841 | 27.519 | 516 | 347 | 10 | 29 | 529 | 22 | 525 | 8.05e-51 | 182 |
| Msa0521590 | MtrunA17_Chr4g0027801 | 47.706 | 109 | 6 | 1 | 296 | 404 | 14 | 71 | 1.07e-18 | 81.3 |
| Msa0521590 | MtrunA17_Chr8g0392161 | 77.500 | 40 | 9 | 0 | 124 | 163 | 32 | 71 | 7.25e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521590 | AT3G18190.1 | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| Msa0521590 | AT1G24510.1 | 38.447 | 515 | 304 | 7 | 21 | 530 | 25 | 531 | 2.19e-104 | 323 |
| Msa0521590 | AT1G24510.3 | 37.553 | 474 | 283 | 7 | 62 | 530 | 13 | 478 | 1.84e-89 | 283 |
| Msa0521590 | AT1G24510.2 | 36.933 | 463 | 279 | 7 | 73 | 530 | 1 | 455 | 9.47e-84 | 268 |
| Msa0521590 | AT3G20050.1 | 33.898 | 531 | 323 | 9 | 18 | 529 | 13 | 534 | 9.29e-83 | 268 |
| Msa0521590 | AT5G20890.1 | 33.656 | 517 | 324 | 7 | 20 | 530 | 14 | 517 | 6.94e-82 | 265 |
| Msa0521590 | AT3G11830.1 | 32.485 | 511 | 325 | 7 | 28 | 529 | 27 | 526 | 1.78e-76 | 251 |
| Msa0521590 | AT3G11830.2 | 32.485 | 511 | 323 | 8 | 28 | 529 | 27 | 524 | 1.05e-74 | 247 |
| Msa0521590 | AT3G03960.1 | 28.817 | 524 | 357 | 7 | 14 | 532 | 17 | 529 | 1.04e-71 | 239 |
| Msa0521590 | AT5G26360.1 | 31.311 | 511 | 340 | 7 | 25 | 530 | 20 | 524 | 2.62e-71 | 238 |
| Msa0521590 | AT5G16070.1 | 29.594 | 517 | 324 | 13 | 30 | 520 | 23 | 525 | 7.05e-53 | 188 |
| Msa0521590 | AT3G02530.1 | 28.794 | 514 | 333 | 11 | 30 | 520 | 23 | 526 | 3.35e-51 | 183 |
Find 119 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3_4:+74495536 | Msa0521590:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3_4:+74495544 | Msa0521590:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3_4:+74495376 | Msa0521590:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3_4:+74495550 | Msa0521590:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3_4:-74494496 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3_4:+74495280 | Msa0521590:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3_4:-74495809 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3_4:+74495509 | Msa0521590:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3_4:-74495020 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3_4:-74494706 | None:intergenic |
| CTCTGTTCTATATCTGTCTT+AGG | 0.348731 | 3_4:-74495194 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3_4:+74495720 | Msa0521590:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3_4:-74494478 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3_4:+74494863 | Msa0521590:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3_4:+74495712 | Msa0521590:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3_4:+74495510 | Msa0521590:CDS |
| ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3_4:+74495642 | Msa0521590:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3_4:-74494484 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3_4:-74494571 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.394765 | 3_4:-74495144 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3_4:-74494457 | None:intergenic |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3_4:+74495721 | Msa0521590:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3_4:+74495007 | Msa0521590:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3_4:-74494975 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3_4:-74495842 | None:intergenic |
| TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3_4:+74495649 | Msa0521590:CDS |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3_4:-74495458 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3_4:+74495551 | Msa0521590:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3_4:-74494490 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3_4:+74494923 | Msa0521590:CDS |
| TCACGATCAGTGAGTTCAAC+CGG | 0.461390 | 3_4:-74494882 | None:intergenic |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3_4:+74494558 | Msa0521590:CDS |
| ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3_4:+74495578 | Msa0521590:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3_4:+74495082 | Msa0521590:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3_4:+74495228 | Msa0521590:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3_4:+74494714 | Msa0521590:CDS |
| ATTAAGAAGATTAAGGCAAC+CGG | 0.476085 | 3_4:+74495287 | Msa0521590:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3_4:+74495943 | Msa0521590:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3_4:+74495515 | Msa0521590:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3_4:-74495011 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3_4:+74495727 | Msa0521590:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3_4:-74495438 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3_4:+74494780 | Msa0521590:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3_4:+74495511 | Msa0521590:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3_4:+74495812 | Msa0521590:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3_4:+74494572 | Msa0521590:CDS |
| AATCAACAACACATTACAAC+CGG | 0.494792 | 3_4:-74495306 | None:intergenic |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3_4:+74495863 | Msa0521590:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3_4:-74494544 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3_4:+74495001 | Msa0521590:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3_4:+74495891 | Msa0521590:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3_4:+74494708 | Msa0521590:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3_4:+74495713 | Msa0521590:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3_4:+74495688 | Msa0521590:CDS |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3_4:-74495707 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3_4:-74494616 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3_4:-74494529 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3_4:+74495010 | Msa0521590:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3_4:+74495516 | Msa0521590:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3_4:-74494649 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3_4:+74495223 | Msa0521590:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3_4:-74494760 | None:intergenic |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3_4:-74494521 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3_4:-74494610 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3_4:+74495705 | Msa0521590:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3_4:-74494545 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3_4:-74494562 | None:intergenic |
| AGTGAATCAGAGATAACAGT+AGG | 0.569565 | 3_4:-74494810 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3_4:+74495116 | Msa0521590:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3_4:-74494739 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3_4:+74494567 | Msa0521590:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3_4:-74495984 | None:intergenic |
| TGGAACAACTTCAAGTGCCT+CGG | 0.574575 | 3_4:-74495789 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3_4:-74495841 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3_4:+74494997 | Msa0521590:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3_4:+74494741 | Msa0521590:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3_4:-74494653 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3_4:-74494541 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3_4:+74495493 | Msa0521590:CDS |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3_4:-74494721 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.591885 | 3_4:-74494785 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3_4:-74495956 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3_4:-74495817 | None:intergenic |
| GAGTTCAACCGGAACAGCCA+TGG | 0.594130 | 3_4:-74494871 | None:intergenic |
| CTGTATTCGTGCATTTGCCG+AGG | 0.594695 | 3_4:+74495772 | Msa0521590:CDS |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3_4:-74494550 | None:intergenic |
| TGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3_4:+74495076 | Msa0521590:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3_4:-74495140 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3_4:-74495978 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3_4:+74495130 | Msa0521590:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3_4:+74495878 | Msa0521590:CDS |
| TGTTCTATATCTGTCTTAGG+AGG | 0.605667 | 3_4:-74495191 | None:intergenic |
| GGTGAATACCATGAGAGAGA+AGG | 0.606764 | 3_4:-74494788 | None:intergenic |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3_4:-74494634 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.610892 | 3_4:+74495077 | Msa0521590:CDS |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3_4:+74495846 | Msa0521590:CDS |
| TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3_4:-74495579 | None:intergenic |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3_4:-74495934 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3_4:+74495967 | Msa0521590:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3_4:+74495919 | Msa0521590:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3_4:+74495113 | Msa0521590:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3_4:+74495896 | Msa0521590:CDS |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3_4:+74495928 | Msa0521590:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3_4:-74495037 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3_4:+74494854 | Msa0521590:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3_4:-74494841 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3_4:+74495044 | Msa0521590:CDS |
| TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3_4:+74495660 | Msa0521590:CDS |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3_4:-74495012 | None:intergenic |
| GTGAATCAGAGATAACAGTA+GGG | 0.649997 | 3_4:-74494809 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3_4:+74495984 | Msa0521590:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3_4:-74495816 | None:intergenic |
| AGATATAGAACAGAGTATTG+TGG | 0.666081 | 3_4:+74495202 | Msa0521590:CDS |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3_4:+74494621 | Msa0521590:CDS |
| TTCAACCGGAACAGCCATGG+CGG | 0.690129 | 3_4:-74494868 | None:intergenic |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3_4:+74495047 | Msa0521590:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3_4:-74494745 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3_4:-74494742 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3_4:+74496020 | Msa0521590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3_4:74495461-74495480 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3_4:74495551-74495570 | Msa0521590:CDS | 25.0% |
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3_4:74495461-74495480 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3_4:74495551-74495570 | Msa0521590:CDS | 25.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3_4:74494585-74494604 | None:intergenic | 30.0% |
| TCTTAACAATCTTCACATCA+CGG | - | chr3_4:74495040-74495059 | None:intergenic | 30.0% | |
| !! | AGATATAGAACAGAGTATTG+TGG | + | chr3_4:74495202-74495221 | Msa0521590:CDS | 30.0% |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3_4:74495261-74495280 | Msa0521590:CDS | 30.0% |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3_4:74495280-74495299 | Msa0521590:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | chr3_4:74495287-74495306 | Msa0521590:CDS | 30.0% | |
| AATCAACAACACATTACAAC+CGG | - | chr3_4:74495309-74495328 | None:intergenic | 30.0% | |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3_4:74495376-74495395 | Msa0521590:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3_4:74495544-74495563 | Msa0521590:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3_4:74495550-74495569 | Msa0521590:CDS | 30.0% |
| TCAAATTACAAACATCCTTG+AGG | + | chr3_4:74495919-74495938 | Msa0521590:CDS | 30.0% | |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3_4:74496020-74496039 | Msa0521590:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3_4:74494585-74494604 | None:intergenic | 30.0% |
| TCTTAACAATCTTCACATCA+CGG | - | chr3_4:74495040-74495059 | None:intergenic | 30.0% | |
| !! | AGATATAGAACAGAGTATTG+TGG | + | chr3_4:74495202-74495221 | Msa0521590:CDS | 30.0% |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3_4:74495261-74495280 | Msa0521590:CDS | 30.0% |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3_4:74495280-74495299 | Msa0521590:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | chr3_4:74495287-74495306 | Msa0521590:CDS | 30.0% | |
| AATCAACAACACATTACAAC+CGG | - | chr3_4:74495309-74495328 | None:intergenic | 30.0% | |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3_4:74495376-74495395 | Msa0521590:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3_4:74495544-74495563 | Msa0521590:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3_4:74495550-74495569 | Msa0521590:CDS | 30.0% |
| TCAAATTACAAACATCCTTG+AGG | + | chr3_4:74495919-74495938 | Msa0521590:CDS | 30.0% | |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3_4:74496020-74496039 | Msa0521590:CDS | 30.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3_4:74494487-74494506 | None:intergenic | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3_4:74494499-74494518 | None:intergenic | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3_4:74494584-74494603 | None:intergenic | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3_4:74494586-74494605 | None:intergenic | 35.0% |
| GTGAATCAGAGATAACAGTA+GGG | - | chr3_4:74494812-74494831 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | - | chr3_4:74494813-74494832 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3_4:74494844-74494863 | None:intergenic | 35.0% |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3_4:74494923-74494942 | Msa0521590:CDS | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3_4:74494978-74494997 | None:intergenic | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3_4:74495044-74495063 | Msa0521590:CDS | 35.0% | |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3_4:74495147-74495166 | None:intergenic | 35.0% | |
| TGTTCTATATCTGTCTTAGG+AGG | - | chr3_4:74495194-74495213 | None:intergenic | 35.0% | |
| CTCTGTTCTATATCTGTCTT+AGG | - | chr3_4:74495197-74495216 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3_4:74495223-74495242 | Msa0521590:CDS | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3_4:74495228-74495247 | Msa0521590:CDS | 35.0% | |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3_4:74495238-74495257 | Msa0521590:CDS | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3_4:74495246-74495265 | Msa0521590:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3_4:74495260-74495279 | Msa0521590:CDS | 35.0% |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3_4:74495441-74495460 | None:intergenic | 35.0% | |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3_4:74495642-74495661 | Msa0521590:CDS | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3_4:74495649-74495668 | Msa0521590:CDS | 35.0% |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3_4:74495845-74495864 | None:intergenic | 35.0% | |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3_4:74494487-74494506 | None:intergenic | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3_4:74494499-74494518 | None:intergenic | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3_4:74494584-74494603 | None:intergenic | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3_4:74494586-74494605 | None:intergenic | 35.0% |
| GTGAATCAGAGATAACAGTA+GGG | - | chr3_4:74494812-74494831 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | - | chr3_4:74494813-74494832 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3_4:74494844-74494863 | None:intergenic | 35.0% |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3_4:74494923-74494942 | Msa0521590:CDS | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3_4:74494978-74494997 | None:intergenic | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3_4:74495044-74495063 | Msa0521590:CDS | 35.0% | |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3_4:74495147-74495166 | None:intergenic | 35.0% | |
| TGTTCTATATCTGTCTTAGG+AGG | - | chr3_4:74495194-74495213 | None:intergenic | 35.0% | |
| CTCTGTTCTATATCTGTCTT+AGG | - | chr3_4:74495197-74495216 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3_4:74495223-74495242 | Msa0521590:CDS | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3_4:74495228-74495247 | Msa0521590:CDS | 35.0% | |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3_4:74495238-74495257 | Msa0521590:CDS | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3_4:74495246-74495265 | Msa0521590:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3_4:74495260-74495279 | Msa0521590:CDS | 35.0% |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3_4:74495441-74495460 | None:intergenic | 35.0% | |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3_4:74495642-74495661 | Msa0521590:CDS | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3_4:74495649-74495668 | Msa0521590:CDS | 35.0% |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3_4:74495845-74495864 | None:intergenic | 35.0% | |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3_4:74494493-74494512 | None:intergenic | 40.0% |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3_4:74494613-74494632 | None:intergenic | 40.0% | |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3_4:74494619-74494638 | None:intergenic | 40.0% |
| GAAGTTATCATCACCAACGA+CGG | + | chr3_4:74494621-74494640 | Msa0521590:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3_4:74494652-74494671 | None:intergenic | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3_4:74494656-74494675 | None:intergenic | 40.0% | |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3_4:74494685-74494704 | None:intergenic | 40.0% |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3_4:74495047-74495066 | Msa0521590:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3_4:74495076-74495095 | Msa0521590:CDS | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3_4:74495077-74495096 | Msa0521590:CDS | 40.0% | |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3_4:74495097-74495116 | Msa0521590:CDS | 40.0% |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3_4:74495143-74495162 | None:intergenic | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3_4:74495476-74495495 | Msa0521590:CDS | 40.0% |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3_4:74495510-74495529 | Msa0521590:CDS | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3_4:74495536-74495555 | Msa0521590:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3_4:74495678-74495697 | None:intergenic | 40.0% | |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3_4:74495677-74495696 | Msa0521590:CDS | 40.0% |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3_4:74495713-74495732 | Msa0521590:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3_4:74495844-74495863 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3_4:74495846-74495865 | Msa0521590:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3_4:74495891-74495910 | Msa0521590:CDS | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3_4:74495896-74495915 | Msa0521590:CDS | 40.0% | |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3_4:74495928-74495947 | Msa0521590:CDS | 40.0% | |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3_4:74494493-74494512 | None:intergenic | 40.0% |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3_4:74494613-74494632 | None:intergenic | 40.0% | |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3_4:74494619-74494638 | None:intergenic | 40.0% |
| GAAGTTATCATCACCAACGA+CGG | + | chr3_4:74494621-74494640 | Msa0521590:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3_4:74494652-74494671 | None:intergenic | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3_4:74494656-74494675 | None:intergenic | 40.0% | |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3_4:74494685-74494704 | None:intergenic | 40.0% |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3_4:74495047-74495066 | Msa0521590:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3_4:74495076-74495095 | Msa0521590:CDS | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3_4:74495077-74495096 | Msa0521590:CDS | 40.0% | |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3_4:74495097-74495116 | Msa0521590:CDS | 40.0% |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3_4:74495143-74495162 | None:intergenic | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3_4:74495476-74495495 | Msa0521590:CDS | 40.0% |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3_4:74495510-74495529 | Msa0521590:CDS | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3_4:74495536-74495555 | Msa0521590:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3_4:74495678-74495697 | None:intergenic | 40.0% | |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3_4:74495677-74495696 | Msa0521590:CDS | 40.0% |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3_4:74495713-74495732 | Msa0521590:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3_4:74495844-74495863 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3_4:74495846-74495865 | Msa0521590:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3_4:74495891-74495910 | Msa0521590:CDS | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3_4:74495896-74495915 | Msa0521590:CDS | 40.0% | |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3_4:74495928-74495947 | Msa0521590:CDS | 40.0% | |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3_4:74494473-74494492 | None:intergenic | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3_4:74494481-74494500 | None:intergenic | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3_4:74494682-74494701 | None:intergenic | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3_4:74494763-74494782 | None:intergenic | 45.0% |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3_4:74494788-74494807 | None:intergenic | 45.0% | |
| GGTGAATACCATGAGAGAGA+AGG | - | chr3_4:74494791-74494810 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3_4:74494885-74494904 | None:intergenic | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3_4:74495113-74495132 | Msa0521590:CDS | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3_4:74495475-74495494 | Msa0521590:CDS | 45.0% |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3_4:74495493-74495512 | Msa0521590:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3_4:74495509-74495528 | Msa0521590:CDS | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3_4:74495511-74495530 | Msa0521590:CDS | 45.0% | |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3_4:74495516-74495535 | Msa0521590:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3_4:74495660-74495679 | Msa0521590:CDS | 45.0% | |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3_4:74495674-74495693 | Msa0521590:CDS | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3_4:74495680-74495699 | Msa0521590:CDS | 45.0% |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3_4:74495712-74495731 | Msa0521590:CDS | 45.0% | |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3_4:74495738-74495757 | Msa0521590:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3_4:74495745-74495764 | Msa0521590:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3_4:74495746-74495765 | Msa0521590:CDS | 45.0% |
| TGGAACAACTTCAAGTGCCT+CGG | - | chr3_4:74495792-74495811 | None:intergenic | 45.0% | |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3_4:74495812-74495831 | None:intergenic | 45.0% |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3_4:74495812-74495831 | Msa0521590:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3_4:74495819-74495838 | None:intergenic | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3_4:74495820-74495839 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3_4:74495863-74495882 | Msa0521590:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3_4:74495878-74495897 | Msa0521590:CDS | 45.0% | |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3_4:74494473-74494492 | None:intergenic | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3_4:74494481-74494500 | None:intergenic | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3_4:74494682-74494701 | None:intergenic | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3_4:74494763-74494782 | None:intergenic | 45.0% |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3_4:74494788-74494807 | None:intergenic | 45.0% | |
| GGTGAATACCATGAGAGAGA+AGG | - | chr3_4:74494791-74494810 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3_4:74494885-74494904 | None:intergenic | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3_4:74495113-74495132 | Msa0521590:CDS | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3_4:74495475-74495494 | Msa0521590:CDS | 45.0% |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3_4:74495493-74495512 | Msa0521590:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3_4:74495509-74495528 | Msa0521590:CDS | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3_4:74495511-74495530 | Msa0521590:CDS | 45.0% | |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3_4:74495516-74495535 | Msa0521590:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3_4:74495660-74495679 | Msa0521590:CDS | 45.0% | |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3_4:74495674-74495693 | Msa0521590:CDS | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3_4:74495680-74495699 | Msa0521590:CDS | 45.0% |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3_4:74495712-74495731 | Msa0521590:CDS | 45.0% | |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3_4:74495738-74495757 | Msa0521590:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3_4:74495745-74495764 | Msa0521590:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3_4:74495746-74495765 | Msa0521590:CDS | 45.0% |
| TGGAACAACTTCAAGTGCCT+CGG | - | chr3_4:74495792-74495811 | None:intergenic | 45.0% | |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3_4:74495812-74495831 | None:intergenic | 45.0% |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3_4:74495812-74495831 | Msa0521590:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3_4:74495819-74495838 | None:intergenic | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3_4:74495820-74495839 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3_4:74495863-74495882 | Msa0521590:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3_4:74495878-74495897 | Msa0521590:CDS | 45.0% | |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3_4:74494478-74494497 | None:intergenic | 50.0% |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3_4:74494524-74494543 | None:intergenic | 50.0% | |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3_4:74494681-74494700 | None:intergenic | 50.0% |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3_4:74494709-74494728 | None:intergenic | 50.0% | |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3_4:74494708-74494727 | Msa0521590:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3_4:74494780-74494799 | Msa0521590:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3_4:74494854-74494873 | Msa0521590:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3_4:74495023-74495042 | None:intergenic | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3_4:74495082-74495101 | Msa0521590:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3_4:74495116-74495135 | Msa0521590:CDS | 50.0% |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3_4:74495515-74495534 | Msa0521590:CDS | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3_4:74495578-74495597 | Msa0521590:CDS | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3_4:74495582-74495601 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3_4:74495710-74495729 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3_4:74495720-74495739 | Msa0521590:CDS | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3_4:74495721-74495740 | Msa0521590:CDS | 50.0% | |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3_4:74495737-74495756 | Msa0521590:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3_4:74495742-74495761 | Msa0521590:CDS | 50.0% |
| CTGTATTCGTGCATTTGCCG+AGG | + | chr3_4:74495772-74495791 | Msa0521590:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3_4:74495959-74495978 | None:intergenic | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3_4:74495967-74495986 | Msa0521590:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3_4:74495981-74496000 | None:intergenic | 50.0% | |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3_4:74494478-74494497 | None:intergenic | 50.0% |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3_4:74494524-74494543 | None:intergenic | 50.0% | |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3_4:74494681-74494700 | None:intergenic | 50.0% |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3_4:74494709-74494728 | None:intergenic | 50.0% | |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3_4:74494708-74494727 | Msa0521590:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3_4:74494780-74494799 | Msa0521590:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3_4:74494854-74494873 | Msa0521590:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3_4:74495023-74495042 | None:intergenic | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3_4:74495082-74495101 | Msa0521590:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3_4:74495116-74495135 | Msa0521590:CDS | 50.0% |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3_4:74495515-74495534 | Msa0521590:CDS | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3_4:74495578-74495597 | Msa0521590:CDS | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3_4:74495582-74495601 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3_4:74495710-74495729 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3_4:74495720-74495739 | Msa0521590:CDS | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3_4:74495721-74495740 | Msa0521590:CDS | 50.0% | |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3_4:74495737-74495756 | Msa0521590:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3_4:74495742-74495761 | Msa0521590:CDS | 50.0% |
| CTGTATTCGTGCATTTGCCG+AGG | + | chr3_4:74495772-74495791 | Msa0521590:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3_4:74495959-74495978 | None:intergenic | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3_4:74495967-74495986 | Msa0521590:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3_4:74495981-74496000 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3_4:74494466-74494485 | None:intergenic | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3_4:74494467-74494486 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3_4:74494468-74494487 | None:intergenic | 55.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3_4:74494741-74494760 | Msa0521590:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3_4:74494748-74494767 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3_4:74494871-74494890 | None:intergenic | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3_4:74494874-74494893 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3_4:74494997-74495016 | Msa0521590:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3_4:74495015-74495034 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3_4:74495130-74495149 | Msa0521590:CDS | 55.0% |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3_4:74495705-74495724 | Msa0521590:CDS | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3_4:74495727-74495746 | Msa0521590:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3_4:74495937-74495956 | None:intergenic | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3_4:74495943-74495962 | Msa0521590:CDS | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3_4:74495987-74496006 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3_4:74495984-74496003 | Msa0521590:CDS | 55.0% | |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3_4:74494466-74494485 | None:intergenic | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3_4:74494467-74494486 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3_4:74494468-74494487 | None:intergenic | 55.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3_4:74494741-74494760 | Msa0521590:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3_4:74494748-74494767 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3_4:74494871-74494890 | None:intergenic | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3_4:74494874-74494893 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3_4:74494997-74495016 | Msa0521590:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3_4:74495015-74495034 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3_4:74495130-74495149 | Msa0521590:CDS | 55.0% |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3_4:74495705-74495724 | Msa0521590:CDS | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3_4:74495727-74495746 | Msa0521590:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3_4:74495937-74495956 | None:intergenic | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3_4:74495943-74495962 | Msa0521590:CDS | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3_4:74495987-74496006 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3_4:74495984-74496003 | Msa0521590:CDS | 55.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3_4:74494547-74494566 | None:intergenic | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3_4:74494548-74494567 | None:intergenic | 60.0% | |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3_4:74494558-74494577 | Msa0521590:CDS | 60.0% | |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3_4:74494574-74494593 | None:intergenic | 60.0% |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3_4:74494572-74494591 | Msa0521590:CDS | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3_4:74494714-74494733 | Msa0521590:CDS | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3_4:74494724-74494743 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3_4:74494742-74494761 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3_4:74494745-74494764 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3_4:74494863-74494882 | Msa0521590:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3_4:74495001-74495020 | Msa0521590:CDS | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3_4:74495014-74495033 | None:intergenic | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3_4:74495688-74495707 | Msa0521590:CDS | 60.0% |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3_4:74494547-74494566 | None:intergenic | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3_4:74494548-74494567 | None:intergenic | 60.0% | |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3_4:74494558-74494577 | Msa0521590:CDS | 60.0% | |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3_4:74494574-74494593 | None:intergenic | 60.0% |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3_4:74494572-74494591 | Msa0521590:CDS | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3_4:74494714-74494733 | Msa0521590:CDS | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3_4:74494724-74494743 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3_4:74494742-74494761 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3_4:74494745-74494764 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3_4:74494863-74494882 | Msa0521590:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3_4:74495001-74495020 | Msa0521590:CDS | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3_4:74495014-74495033 | None:intergenic | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3_4:74495688-74495707 | Msa0521590:CDS | 60.0% |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3_4:74494532-74494551 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3_4:74494553-74494572 | None:intergenic | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3_4:74494637-74494656 | None:intergenic | 65.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3_4:74495007-74495026 | Msa0521590:CDS | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3_4:74495010-74495029 | Msa0521590:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3_4:74494532-74494551 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3_4:74494553-74494572 | None:intergenic | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3_4:74494637-74494656 | None:intergenic | 65.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3_4:74495007-74495026 | Msa0521590:CDS | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3_4:74495010-74495029 | Msa0521590:CDS | 65.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3_4:74494460-74494479 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3_4:74494544-74494563 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3_4:74494565-74494584 | None:intergenic | 70.0% | |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3_4:74494567-74494586 | Msa0521590:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3_4:74494460-74494479 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3_4:74494544-74494563 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3_4:74494565-74494584 | None:intergenic | 70.0% | |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3_4:74494567-74494586 | Msa0521590:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 74494447 | 74496045 | 74494447 | ID=Msa0521590;Name=Msa0521590 |
| chr3_4 | mRNA | 74494447 | 74496045 | 74494447 | ID=Msa0521590-mRNA-1;Parent=Msa0521590;Name=Msa0521590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|532 |
| chr3_4 | exon | 74494447 | 74496045 | 74494447 | ID=Msa0521590-mRNA-1:exon:21076;Parent=Msa0521590-mRNA-1 |
| chr3_4 | CDS | 74494447 | 74496045 | 74494447 | ID=Msa0521590-mRNA-1:cds;Parent=Msa0521590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
