Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522010 | AES73887.1 | 96.947 | 131 | 4 | 0 | 1 | 131 | 1 | 131 | 1.96e-86 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522010 | G7J3I0 | 96.947 | 131 | 4 | 0 | 1 | 131 | 1 | 131 | 9.36e-87 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0477940 | Msa0522010 | 0.972494 | 7.393106e-135 | -8.615850e-47 |
| Msa0522010 | Msa1463810 | 0.847328 | 1.239913e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522010 | MtrunA17_Chr3g0140381 | 96.947 | 131 | 4 | 0 | 1 | 131 | 1 | 131 | 1.80e-90 | 258 |
| Msa0522010 | MtrunA17_Chr8g0344381 | 44.086 | 93 | 51 | 1 | 36 | 127 | 30 | 122 | 1.51e-24 | 92.0 |
| Msa0522010 | MtrunA17_Chr4g0070351 | 44.681 | 94 | 51 | 1 | 36 | 128 | 30 | 123 | 1.00e-21 | 84.0 |
| Msa0522010 | MtrunA17_Chr5g0394601 | 42.222 | 90 | 48 | 1 | 36 | 125 | 2 | 87 | 3.35e-21 | 82.0 |
| Msa0522010 | MtrunA17_Chr3g0136441 | 38.710 | 93 | 56 | 1 | 36 | 128 | 11 | 102 | 3.25e-19 | 77.4 |
| Msa0522010 | MtrunA17_Chr4g0070371 | 41.053 | 95 | 54 | 1 | 36 | 128 | 24 | 118 | 4.93e-19 | 77.8 |
| Msa0522010 | MtrunA17_Chr1g0150711 | 35.185 | 108 | 66 | 2 | 24 | 128 | 4 | 110 | 4.59e-18 | 75.1 |
| Msa0522010 | MtrunA17_Chr8g0340421 | 34.146 | 123 | 79 | 2 | 4 | 126 | 31 | 151 | 7.12e-18 | 75.5 |
| Msa0522010 | MtrunA17_Chr2g0331111 | 34.146 | 123 | 78 | 3 | 4 | 126 | 32 | 151 | 7.64e-18 | 75.5 |
| Msa0522010 | MtrunA17_Chr1g0205251 | 37.500 | 88 | 50 | 2 | 36 | 122 | 2 | 85 | 5.51e-16 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522010 | AT2G25780.1 | 38.710 | 124 | 75 | 1 | 8 | 130 | 7 | 130 | 1.20e-22 | 87.4 |
| Msa0522010 | AT1G79770.1 | 39.496 | 119 | 67 | 2 | 8 | 126 | 27 | 140 | 2.22e-20 | 81.6 |
| Msa0522010 | AT1G72510.1 | 38.947 | 95 | 57 | 1 | 35 | 128 | 32 | 126 | 9.55e-20 | 80.1 |
| Msa0522010 | AT1G72510.2 | 38.947 | 95 | 57 | 1 | 35 | 128 | 32 | 126 | 9.55e-20 | 80.1 |
| Msa0522010 | AT4G14819.1 | 41.111 | 90 | 47 | 2 | 36 | 125 | 2 | 85 | 1.67e-19 | 77.8 |
| Msa0522010 | AT3G22540.1 | 37.778 | 90 | 52 | 2 | 36 | 125 | 2 | 87 | 2.17e-17 | 72.8 |
| Msa0522010 | AT5G20670.1 | 40.278 | 72 | 43 | 0 | 34 | 105 | 20 | 91 | 1.26e-15 | 69.3 |
| Msa0522010 | AT2G09970.1 | 35.354 | 99 | 56 | 3 | 35 | 128 | 32 | 127 | 3.62e-14 | 65.9 |
| Msa0522010 | AT1G54095.1 | 37.895 | 95 | 54 | 2 | 36 | 127 | 15 | 107 | 1.99e-13 | 63.5 |
| Msa0522010 | AT5G25840.1 | 28.571 | 133 | 80 | 2 | 8 | 125 | 4 | 136 | 3.17e-12 | 60.8 |
Find 25 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGTTAATGAGAGTTTA+GGG | 0.268783 | 3_4:+75057272 | None:intergenic |
| GACAAAGTTAATGAGAGTTT+AGG | 0.302938 | 3_4:+75057271 | None:intergenic |
| AAGAAGATTATTGTGGAAAG+TGG | 0.375021 | 3_4:-75057423 | Msa0522010:CDS |
| TGATTGTGGCATTATATTCC+TGG | 0.387287 | 3_4:+75057302 | None:intergenic |
| GCCAATTATAACCAAACATT+AGG | 0.401660 | 3_4:+75056095 | None:intergenic |
| TCTCATTAACTTTGTCTATG+AGG | 0.404000 | 3_4:-75057264 | Msa0522010:CDS |
| AATTTGAAGATCCTAATGTT+TGG | 0.428274 | 3_4:-75056106 | Msa0522010:three_prime_UTR |
| CTAAGAGAAGTTTAGACAAA+AGG | 0.433359 | 3_4:-75057234 | Msa0522010:CDS |
| AAGGCTACGAAAGGCGGTCT+CGG | 0.484076 | 3_4:-75057584 | Msa0522010:CDS |
| CTCATTAACTTTGTCTATGA+GGG | 0.486170 | 3_4:-75057263 | Msa0522010:CDS |
| GAAGCTGTTAAAGATAAAGT+AGG | 0.501109 | 3_4:-75057382 | Msa0522010:CDS |
| CTTCTTTCATCCCACAACAT+TGG | 0.506214 | 3_4:+75057476 | None:intergenic |
| AATTAACAAATACTATAACT+TGG | 0.525508 | 3_4:-75057548 | Msa0522010:CDS |
| GTCTCAGATGGATTTCAGCC+AGG | 0.530828 | 3_4:-75057320 | Msa0522010:CDS |
| TTTAGGGTTAAGTCTGATTG+TGG | 0.540154 | 3_4:+75057288 | None:intergenic |
| AAGCTGAATGCCAATGTTGT+GGG | 0.549736 | 3_4:-75057486 | Msa0522010:CDS |
| AAGCTGTTAAAGATAAAGTA+GGG | 0.550044 | 3_4:-75057381 | Msa0522010:CDS |
| TGATGCTTTGAAGTCTCAGA+TGG | 0.552591 | 3_4:-75057332 | Msa0522010:CDS |
| GAAGTTGAAGAAGATTATTG+TGG | 0.554061 | 3_4:-75057430 | Msa0522010:CDS |
| TATTGTGGAAAGTGGGTGTG+TGG | 0.596235 | 3_4:-75057415 | Msa0522010:CDS |
| AGAAGATTATTGTGGAAAGT+GGG | 0.599804 | 3_4:-75057422 | Msa0522010:CDS |
| GAGTCAGCAAAGGCTACGAA+AGG | 0.603985 | 3_4:-75057593 | Msa0522010:CDS |
| GAAGCTGAATGCCAATGTTG+TGG | 0.606985 | 3_4:-75057487 | Msa0522010:CDS |
| TCAGCAAAGGCTACGAAAGG+CGG | 0.643815 | 3_4:-75057590 | Msa0522010:CDS |
| TATAGGAGGAGAGTCAGCAA+AGG | 0.654980 | 3_4:-75057603 | Msa0522010:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTTAAATTA+AGG | - | chr3_4:75056783-75056802 | Msa0522010:intron | 0.0% |
| !! | TAAAAATAAAATAAAATAAA+AGG | + | chr3_4:75057639-75057658 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTTTTAAATTA+AGG | - | chr3_4:75056783-75056802 | Msa0522010:intron | 0.0% |
| !! | TAAAAATAAAATAAAATAAA+AGG | + | chr3_4:75057639-75057658 | None:intergenic | 0.0% |
| !!! | AATGTTTTTTGTTTTAATTA+AGG | - | chr3_4:75057707-75057726 | Msa0522010:intron | 10.0% |
| !!! | AATGTTTTTTGTTTTAATTA+AGG | - | chr3_4:75057707-75057726 | Msa0522010:intron | 10.0% |
| !! | TGAATAAATTAGAGATTAAT+GGG | + | chr3_4:75056159-75056178 | None:intergenic | 15.0% |
| !! | ATGAATAAATTAGAGATTAA+TGG | + | chr3_4:75056160-75056179 | None:intergenic | 15.0% |
| !! | AATTAACAAATACTATAACT+TGG | - | chr3_4:75056307-75056326 | Msa0522010:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr3_4:75057492-75057511 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3_4:75057270-75057289 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3_4:75057401-75057420 | Msa0522010:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr3_4:75057492-75057511 | Msa0522010:CDS | 15.0% |
| !! | TGAATAAATTAGAGATTAAT+GGG | + | chr3_4:75056159-75056178 | None:intergenic | 15.0% |
| !! | ATGAATAAATTAGAGATTAA+TGG | + | chr3_4:75056160-75056179 | None:intergenic | 15.0% |
| !! | AATTAACAAATACTATAACT+TGG | - | chr3_4:75056307-75056326 | Msa0522010:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr3_4:75057492-75057511 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3_4:75057270-75057289 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3_4:75057401-75057420 | Msa0522010:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr3_4:75057492-75057511 | Msa0522010:CDS | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3_4:75057140-75057159 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3_4:75057141-75057160 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr3_4:75057235-75057254 | None:intergenic | 20.0% |
| !!! | TTAGAGTGTAGTTTTTAAAA+TGG | - | chr3_4:75057585-75057604 | Msa0522010:CDS | 20.0% |
| !!! | TTTTAATTAAGGATGTCTTT+AGG | - | chr3_4:75057718-75057737 | Msa0522010:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3_4:75057140-75057159 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3_4:75057141-75057160 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr3_4:75057235-75057254 | None:intergenic | 20.0% |
| !!! | TTAGAGTGTAGTTTTTAAAA+TGG | - | chr3_4:75057585-75057604 | Msa0522010:CDS | 20.0% |
| !!! | TTTTAATTAAGGATGTCTTT+AGG | - | chr3_4:75057718-75057737 | Msa0522010:intron | 20.0% |
| !!! | CAACTTTTTTCTTTCATTCA+TGG | - | chr3_4:75056121-75056140 | Msa0522010:intron | 25.0% |
| ! | AATTTCCTGTTTCCATATAT+AGG | - | chr3_4:75056235-75056254 | Msa0522010:intron | 25.0% |
| ! | AAGCTGTTAAAGATAAAGTA+GGG | - | chr3_4:75056474-75056493 | Msa0522010:intron | 25.0% |
| ! | ACAAAGTTAATGAGAGTTTA+GGG | + | chr3_4:75056586-75056605 | None:intergenic | 25.0% |
| ! | TTTAGACAAAAGGAATTGTA+AGG | - | chr3_4:75056631-75056650 | Msa0522010:intron | 25.0% |
| ! | TTAGACAAAAGGAATTGTAA+GGG | - | chr3_4:75056632-75056651 | Msa0522010:intron | 25.0% |
| !!! | TTGTTTTACTGTCTTTGTAT+AGG | - | chr3_4:75056717-75056736 | Msa0522010:intron | 25.0% |
| !! | GAAGGACTAACTTTATATTT+TGG | + | chr3_4:75056901-75056920 | None:intergenic | 25.0% |
| ! | TTGAAATCAATACATTTCGA+AGG | + | chr3_4:75056961-75056980 | None:intergenic | 25.0% |
| ! | AGGGCAAAAAAACAAAATTA+GGG | + | chr3_4:75057107-75057126 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3_4:75057429-75057448 | Msa0522010:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3_4:75057430-75057449 | Msa0522010:CDS | 25.0% |
| ! | AATTTGAAGATCCTAATGTT+TGG | - | chr3_4:75057749-75057768 | Msa0522010:five_prime_UTR | 25.0% |
| !!! | CAACTTTTTTCTTTCATTCA+TGG | - | chr3_4:75056121-75056140 | Msa0522010:intron | 25.0% |
| ! | AATTTCCTGTTTCCATATAT+AGG | - | chr3_4:75056235-75056254 | Msa0522010:intron | 25.0% |
| ! | AAGCTGTTAAAGATAAAGTA+GGG | - | chr3_4:75056474-75056493 | Msa0522010:intron | 25.0% |
| ! | ACAAAGTTAATGAGAGTTTA+GGG | + | chr3_4:75056586-75056605 | None:intergenic | 25.0% |
| ! | TTTAGACAAAAGGAATTGTA+AGG | - | chr3_4:75056631-75056650 | Msa0522010:intron | 25.0% |
| ! | TTAGACAAAAGGAATTGTAA+GGG | - | chr3_4:75056632-75056651 | Msa0522010:intron | 25.0% |
| !!! | TTGTTTTACTGTCTTTGTAT+AGG | - | chr3_4:75056717-75056736 | Msa0522010:intron | 25.0% |
| !! | GAAGGACTAACTTTATATTT+TGG | + | chr3_4:75056901-75056920 | None:intergenic | 25.0% |
| ! | TTGAAATCAATACATTTCGA+AGG | + | chr3_4:75056961-75056980 | None:intergenic | 25.0% |
| ! | AGGGCAAAAAAACAAAATTA+GGG | + | chr3_4:75057107-75057126 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3_4:75057429-75057448 | Msa0522010:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3_4:75057430-75057449 | Msa0522010:CDS | 25.0% |
| ! | AATTTGAAGATCCTAATGTT+TGG | - | chr3_4:75057749-75057768 | Msa0522010:five_prime_UTR | 25.0% |
| GAAGTTGAAGAAGATTATTG+TGG | - | chr3_4:75056425-75056444 | Msa0522010:intron | 30.0% | |
| AAGAAGATTATTGTGGAAAG+TGG | - | chr3_4:75056432-75056451 | Msa0522010:intron | 30.0% | |
| AGAAGATTATTGTGGAAAGT+GGG | - | chr3_4:75056433-75056452 | Msa0522010:intron | 30.0% | |
| GAAGCTGTTAAAGATAAAGT+AGG | - | chr3_4:75056473-75056492 | Msa0522010:intron | 30.0% | |
| GACAAAGTTAATGAGAGTTT+AGG | + | chr3_4:75056587-75056606 | None:intergenic | 30.0% | |
| TCTCATTAACTTTGTCTATG+AGG | - | chr3_4:75056591-75056610 | Msa0522010:intron | 30.0% | |
| CTCATTAACTTTGTCTATGA+GGG | - | chr3_4:75056592-75056611 | Msa0522010:intron | 30.0% | |
| CTAAGAGAAGTTTAGACAAA+AGG | - | chr3_4:75056621-75056640 | Msa0522010:intron | 30.0% | |
| AAAAGGAATTGTAAGGGATT+AGG | - | chr3_4:75056638-75056657 | Msa0522010:intron | 30.0% | |
| ATGAAAATCAATTAGCCCTA+TGG | + | chr3_4:75056695-75056714 | None:intergenic | 30.0% | |
| CTTTGTATAGGTTTGAATGT+AGG | - | chr3_4:75056729-75056748 | Msa0522010:intron | 30.0% | |
| TTTGAATGTAGGATTCTGAA+GGG | - | chr3_4:75056740-75056759 | Msa0522010:intron | 30.0% | |
| TCGAAGGAACTATCAATAAA+GGG | + | chr3_4:75056945-75056964 | None:intergenic | 30.0% | |
| TTCGAAGGAACTATCAATAA+AGG | + | chr3_4:75056946-75056965 | None:intergenic | 30.0% | |
| ! | AATGTATTTTGCTCTTTCCA+TGG | - | chr3_4:75056985-75057004 | Msa0522010:intron | 30.0% |
| ! | ATGTATTTTGCTCTTTCCAT+GGG | - | chr3_4:75056986-75057005 | Msa0522010:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_4:75057523-75057542 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_4:75057522-75057541 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr3_4:75057507-75057526 | None:intergenic | 30.0% | |
| CAGGGCAAAAAAACAAAATT+AGG | + | chr3_4:75057108-75057127 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr3_4:75057367-75057386 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr3_4:75057507-75057526 | Msa0522010:CDS | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_4:75057522-75057541 | Msa0522010:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_4:75057523-75057542 | Msa0522010:CDS | 30.0% |
| GAAGTTGAAGAAGATTATTG+TGG | - | chr3_4:75056425-75056444 | Msa0522010:intron | 30.0% | |
| AAGAAGATTATTGTGGAAAG+TGG | - | chr3_4:75056432-75056451 | Msa0522010:intron | 30.0% | |
| AGAAGATTATTGTGGAAAGT+GGG | - | chr3_4:75056433-75056452 | Msa0522010:intron | 30.0% | |
| GAAGCTGTTAAAGATAAAGT+AGG | - | chr3_4:75056473-75056492 | Msa0522010:intron | 30.0% | |
| GACAAAGTTAATGAGAGTTT+AGG | + | chr3_4:75056587-75056606 | None:intergenic | 30.0% | |
| TCTCATTAACTTTGTCTATG+AGG | - | chr3_4:75056591-75056610 | Msa0522010:intron | 30.0% | |
| CTCATTAACTTTGTCTATGA+GGG | - | chr3_4:75056592-75056611 | Msa0522010:intron | 30.0% | |
| CTAAGAGAAGTTTAGACAAA+AGG | - | chr3_4:75056621-75056640 | Msa0522010:intron | 30.0% | |
| AAAAGGAATTGTAAGGGATT+AGG | - | chr3_4:75056638-75056657 | Msa0522010:intron | 30.0% | |
| ATGAAAATCAATTAGCCCTA+TGG | + | chr3_4:75056695-75056714 | None:intergenic | 30.0% | |
| CTTTGTATAGGTTTGAATGT+AGG | - | chr3_4:75056729-75056748 | Msa0522010:intron | 30.0% | |
| TTTGAATGTAGGATTCTGAA+GGG | - | chr3_4:75056740-75056759 | Msa0522010:intron | 30.0% | |
| TCGAAGGAACTATCAATAAA+GGG | + | chr3_4:75056945-75056964 | None:intergenic | 30.0% | |
| TTCGAAGGAACTATCAATAA+AGG | + | chr3_4:75056946-75056965 | None:intergenic | 30.0% | |
| ! | AATGTATTTTGCTCTTTCCA+TGG | - | chr3_4:75056985-75057004 | Msa0522010:intron | 30.0% |
| ! | ATGTATTTTGCTCTTTCCAT+GGG | - | chr3_4:75056986-75057005 | Msa0522010:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_4:75057523-75057542 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_4:75057522-75057541 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr3_4:75057507-75057526 | None:intergenic | 30.0% | |
| CAGGGCAAAAAAACAAAATT+AGG | + | chr3_4:75057108-75057127 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr3_4:75057367-75057386 | None:intergenic | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr3_4:75057507-75057526 | Msa0522010:CDS | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_4:75057522-75057541 | Msa0522010:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_4:75057523-75057542 | Msa0522010:CDS | 30.0% |
| TTCCTGTTTCCATATATAGG+AGG | - | chr3_4:75056238-75056257 | Msa0522010:intron | 35.0% | |
| TGATTGTGGCATTATATTCC+TGG | + | chr3_4:75056556-75056575 | None:intergenic | 35.0% | |
| ! | TTTAGGGTTAAGTCTGATTG+TGG | + | chr3_4:75056570-75056589 | None:intergenic | 35.0% |
| TAGGAATAACTAAGCTCACT+AGG | - | chr3_4:75056657-75056676 | Msa0522010:intron | 35.0% | |
| GTTTGAATGTAGGATTCTGA+AGG | - | chr3_4:75056739-75056758 | Msa0522010:intron | 35.0% | |
| ! | TTGAATGTAGGATTCTGAAG+GGG | - | chr3_4:75056741-75056760 | Msa0522010:intron | 35.0% |
| ! | GCTTAGATGGAGAATTTTGA+AGG | + | chr3_4:75056919-75056938 | None:intergenic | 35.0% |
| ! | CAATAAAGGGTATGCTTAGA+TGG | + | chr3_4:75056932-75056951 | None:intergenic | 35.0% |
| AGTAAGATATAACTGACCCA+TGG | + | chr3_4:75057005-75057024 | None:intergenic | 35.0% | |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | + | chr3_4:75057232-75057251 | None:intergenic | 35.0% |
| GCAGCAAAACTAGTATTTGA+AGG | - | chr3_4:75057607-75057626 | Msa0522010:intron | 35.0% | |
| !! | AAAACTACAAGAAGAGCATC+TGG | + | chr3_4:75057676-75057695 | None:intergenic | 35.0% |
| TTCCTGTTTCCATATATAGG+AGG | - | chr3_4:75056238-75056257 | Msa0522010:intron | 35.0% | |
| TGATTGTGGCATTATATTCC+TGG | + | chr3_4:75056556-75056575 | None:intergenic | 35.0% | |
| ! | TTTAGGGTTAAGTCTGATTG+TGG | + | chr3_4:75056570-75056589 | None:intergenic | 35.0% |
| TAGGAATAACTAAGCTCACT+AGG | - | chr3_4:75056657-75056676 | Msa0522010:intron | 35.0% | |
| GTTTGAATGTAGGATTCTGA+AGG | - | chr3_4:75056739-75056758 | Msa0522010:intron | 35.0% | |
| ! | TTGAATGTAGGATTCTGAAG+GGG | - | chr3_4:75056741-75056760 | Msa0522010:intron | 35.0% |
| ! | GCTTAGATGGAGAATTTTGA+AGG | + | chr3_4:75056919-75056938 | None:intergenic | 35.0% |
| ! | CAATAAAGGGTATGCTTAGA+TGG | + | chr3_4:75056932-75056951 | None:intergenic | 35.0% |
| AGTAAGATATAACTGACCCA+TGG | + | chr3_4:75057005-75057024 | None:intergenic | 35.0% | |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | + | chr3_4:75057232-75057251 | None:intergenic | 35.0% |
| GCAGCAAAACTAGTATTTGA+AGG | - | chr3_4:75057607-75057626 | Msa0522010:intron | 35.0% | |
| !! | AAAACTACAAGAAGAGCATC+TGG | + | chr3_4:75057676-75057695 | None:intergenic | 35.0% |
| CTCCTCCTATATATGGAAAC+AGG | + | chr3_4:75056243-75056262 | None:intergenic | 40.0% | |
| AAGCTGAATGCCAATGTTGT+GGG | - | chr3_4:75056369-75056388 | Msa0522010:intron | 40.0% | |
| CTTCTTTCATCCCACAACAT+TGG | + | chr3_4:75056382-75056401 | None:intergenic | 40.0% | |
| !! | TGATGCTTTGAAGTCTCAGA+TGG | - | chr3_4:75056523-75056542 | Msa0522010:intron | 40.0% |
| ! | TAGGAGTGCAAGTTATCCAT+AGG | - | chr3_4:75056676-75056695 | Msa0522010:intron | 40.0% |
| ! | AGGAGTGCAAGTTATCCATA+GGG | - | chr3_4:75056677-75056696 | Msa0522010:intron | 40.0% |
| TGAGTAGGGACTAATACTCA+GGG | + | chr3_4:75057126-75057145 | None:intergenic | 40.0% | |
| TTGAGTAGGGACTAATACTC+AGG | + | chr3_4:75057127-75057146 | None:intergenic | 40.0% | |
| CTCCTCCTATATATGGAAAC+AGG | + | chr3_4:75056243-75056262 | None:intergenic | 40.0% | |
| AAGCTGAATGCCAATGTTGT+GGG | - | chr3_4:75056369-75056388 | Msa0522010:intron | 40.0% | |
| CTTCTTTCATCCCACAACAT+TGG | + | chr3_4:75056382-75056401 | None:intergenic | 40.0% | |
| !! | TGATGCTTTGAAGTCTCAGA+TGG | - | chr3_4:75056523-75056542 | Msa0522010:intron | 40.0% |
| ! | TAGGAGTGCAAGTTATCCAT+AGG | - | chr3_4:75056676-75056695 | Msa0522010:intron | 40.0% |
| ! | AGGAGTGCAAGTTATCCATA+GGG | - | chr3_4:75056677-75056696 | Msa0522010:intron | 40.0% |
| TGAGTAGGGACTAATACTCA+GGG | + | chr3_4:75057126-75057145 | None:intergenic | 40.0% | |
| TTGAGTAGGGACTAATACTC+AGG | + | chr3_4:75057127-75057146 | None:intergenic | 40.0% | |
| ! | GCTGACTCTCCTCCTATATA+TGG | + | chr3_4:75056250-75056269 | None:intergenic | 45.0% |
| TATAGGAGGAGAGTCAGCAA+AGG | - | chr3_4:75056252-75056271 | Msa0522010:intron | 45.0% | |
| GAAGCTGAATGCCAATGTTG+TGG | - | chr3_4:75056368-75056387 | Msa0522010:intron | 45.0% | |
| TATTGTGGAAAGTGGGTGTG+TGG | - | chr3_4:75056440-75056459 | Msa0522010:intron | 45.0% | |
| ! | AATGTAGGATTCTGAAGGGG+TGG | - | chr3_4:75056744-75056763 | Msa0522010:intron | 45.0% |
| !! | GGTCGCTATTTTATAGGGAC+TGG | - | chr3_4:75057528-75057547 | Msa0522010:CDS | 45.0% |
| ! | GCTGACTCTCCTCCTATATA+TGG | + | chr3_4:75056250-75056269 | None:intergenic | 45.0% |
| TATAGGAGGAGAGTCAGCAA+AGG | - | chr3_4:75056252-75056271 | Msa0522010:intron | 45.0% | |
| GAAGCTGAATGCCAATGTTG+TGG | - | chr3_4:75056368-75056387 | Msa0522010:intron | 45.0% | |
| TATTGTGGAAAGTGGGTGTG+TGG | - | chr3_4:75056440-75056459 | Msa0522010:intron | 45.0% | |
| ! | AATGTAGGATTCTGAAGGGG+TGG | - | chr3_4:75056744-75056763 | Msa0522010:intron | 45.0% |
| !! | GGTCGCTATTTTATAGGGAC+TGG | - | chr3_4:75057528-75057547 | Msa0522010:CDS | 45.0% |
| !! | AAATTAAAAATAAAATTAAG+TGG | - | chr3_4:75056818-75056837 | Msa0522010:intron | 5.0% |
| !! | AATTAAAAATAAAATTAAGT+GGG | - | chr3_4:75056819-75056838 | Msa0522010:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3_4:75057462-75057481 | Msa0522010:CDS | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3_4:75057463-75057482 | Msa0522010:CDS | 5.0% |
| !!! | AACAATTTTAATAAAAATAA+GGG | + | chr3_4:75057566-75057585 | None:intergenic | 5.0% |
| !!! | AAACAATTTTAATAAAAATA+AGG | + | chr3_4:75057567-75057586 | None:intergenic | 5.0% |
| !! | AAATTAAAAATAAAATTAAG+TGG | - | chr3_4:75056818-75056837 | Msa0522010:intron | 5.0% |
| !! | AATTAAAAATAAAATTAAGT+GGG | - | chr3_4:75056819-75056838 | Msa0522010:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3_4:75057462-75057481 | Msa0522010:CDS | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3_4:75057463-75057482 | Msa0522010:CDS | 5.0% |
| !!! | AACAATTTTAATAAAAATAA+GGG | + | chr3_4:75057566-75057585 | None:intergenic | 5.0% |
| !!! | AAACAATTTTAATAAAAATA+AGG | + | chr3_4:75057567-75057586 | None:intergenic | 5.0% |
| GAGTCAGCAAAGGCTACGAA+AGG | - | chr3_4:75056262-75056281 | Msa0522010:intron | 50.0% | |
| TCAGCAAAGGCTACGAAAGG+CGG | - | chr3_4:75056265-75056284 | Msa0522010:intron | 50.0% | |
| ! | GTCTCAGATGGATTTCAGCC+AGG | - | chr3_4:75056535-75056554 | Msa0522010:intron | 50.0% |
| GAGTCAGCAAAGGCTACGAA+AGG | - | chr3_4:75056262-75056281 | Msa0522010:intron | 50.0% | |
| TCAGCAAAGGCTACGAAAGG+CGG | - | chr3_4:75056265-75056284 | Msa0522010:intron | 50.0% | |
| ! | GTCTCAGATGGATTTCAGCC+AGG | - | chr3_4:75056535-75056554 | Msa0522010:intron | 50.0% |
| AAGGCTACGAAAGGCGGTCT+CGG | - | chr3_4:75056271-75056290 | Msa0522010:intron | 55.0% | |
| ! | AGGATTCTGAAGGGGTGGAG+AGG | - | chr3_4:75056749-75056768 | Msa0522010:intron | 55.0% |
| ! | GGATTCTGAAGGGGTGGAGA+GGG | - | chr3_4:75056750-75056769 | Msa0522010:intron | 55.0% |
| AAGGCTACGAAAGGCGGTCT+CGG | - | chr3_4:75056271-75056290 | Msa0522010:intron | 55.0% | |
| ! | AGGATTCTGAAGGGGTGGAG+AGG | - | chr3_4:75056749-75056768 | Msa0522010:intron | 55.0% |
| ! | GGATTCTGAAGGGGTGGAGA+GGG | - | chr3_4:75056750-75056769 | Msa0522010:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 75056100 | 75057777 | 75056100 | ID=Msa0522010;Name=Msa0522010 |
| chr3_4 | mRNA | 75056100 | 75057777 | 75056100 | ID=Msa0522010-mRNA-1;Parent=Msa0522010;Name=Msa0522010-mRNA-1;_AED=0.34;_eAED=0.34;_QI=40|0.5|0.33|0.66|1|1|3|36|131 |
| chr3_4 | exon | 75056100 | 75056137 | 75056100 | ID=Msa0522010-mRNA-1:exon:21389;Parent=Msa0522010-mRNA-1 |
| chr3_4 | exon | 75057230 | 75057620 | 75057230 | ID=Msa0522010-mRNA-1:exon:21388;Parent=Msa0522010-mRNA-1 |
| chr3_4 | exon | 75057735 | 75057777 | 75057735 | ID=Msa0522010-mRNA-1:exon:21387;Parent=Msa0522010-mRNA-1 |
| chr3_4 | five_prime_UTR | 75057738 | 75057777 | 75057738 | ID=Msa0522010-mRNA-1:five_prime_utr;Parent=Msa0522010-mRNA-1 |
| chr3_4 | CDS | 75057735 | 75057737 | 75057735 | ID=Msa0522010-mRNA-1:cds;Parent=Msa0522010-mRNA-1 |
| chr3_4 | CDS | 75057230 | 75057620 | 75057230 | ID=Msa0522010-mRNA-1:cds;Parent=Msa0522010-mRNA-1 |
| chr3_4 | CDS | 75056136 | 75056137 | 75056136 | ID=Msa0522010-mRNA-1:cds;Parent=Msa0522010-mRNA-1 |
| chr3_4 | three_prime_UTR | 75056100 | 75056135 | 75056100 | ID=Msa0522010-mRNA-1:three_prime_utr;Parent=Msa0522010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
