Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522350 | AES73909.1 | 66.176 | 136 | 10 | 1 | 23 | 122 | 1 | 136 | 2.30e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522350 | G7J409 | 66.176 | 136 | 10 | 1 | 23 | 122 | 1 | 136 | 1.10e-31 | 118 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0478260 | Msa0522350 | 0.902621 | 8.038005e-79 | -8.615850e-47 |
| Msa0522350 | Msa0597790 | 0.808506 | 2.995913e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522350 | MtrunA17_Chr3g0140701 | 87.356 | 87 | 11 | 0 | 36 | 122 | 6 | 92 | 3.16e-31 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATCACCCATCAATTCAT+AGG | 0.318130 | 3_4:+75454734 | None:intergenic |
| TTGTCCTCGGGTTTCGGTTA+GGG | 0.326888 | 3_4:+75454892 | None:intergenic |
| TTTGTCCTCGGGTTTCGGTT+AGG | 0.335496 | 3_4:+75454891 | None:intergenic |
| AGCCATTTGTCCTCGGGTTT+CGG | 0.344200 | 3_4:+75454886 | None:intergenic |
| ACCTTGTAGCCATTTGTCCT+CGG | 0.403216 | 3_4:+75454879 | None:intergenic |
| AACCGAAACCCGAGGACAAA+TGG | 0.448199 | 3_4:-75454888 | Msa0522350:CDS |
| AATTGTCATGGAAGAAAATA+CGG | 0.459077 | 3_4:-75454694 | Msa0522350:CDS |
| CCTTGTAGCCATTTGTCCTC+GGG | 0.464410 | 3_4:+75454880 | None:intergenic |
| TGTCCTCGGGTTTCGGTTAG+GGG | 0.488701 | 3_4:+75454893 | None:intergenic |
| TACGGTGGAAGAAGAAGAAC+CGG | 0.494025 | 3_4:-75454676 | Msa0522350:CDS |
| TAATGTTAGGTAGGAAGAGA+TGG | 0.496606 | 3_4:+75456525 | None:intergenic |
| TGATGAAGAAGACAAGGAAG+AGG | 0.497163 | 3_4:-75454634 | Msa0522350:CDS |
| GCATCACCCATCAATTCATA+GGG | 0.502264 | 3_4:+75454735 | None:intergenic |
| AGTCTGTAGAAGCTAATGTT+AGG | 0.505407 | 3_4:+75456512 | None:intergenic |
| ATCATGTCCTCTACATCCTC+CGG | 0.509155 | 3_4:+75454657 | None:intergenic |
| CCCGAGGACAAATGGCTACA+AGG | 0.515828 | 3_4:-75454880 | Msa0522350:intron |
| TGAAGAAGACAAGGAAGAGG+AGG | 0.528770 | 3_4:-75454631 | Msa0522350:CDS |
| TGTAGAAGCTAATGTTAGGT+AGG | 0.534705 | 3_4:+75456516 | None:intergenic |
| GAGATGGAGATATCACCAAT+TGG | 0.550522 | 3_4:+75456541 | None:intergenic |
| GAGAGAAACTAAAATTGTCA+TGG | 0.550561 | 3_4:-75454706 | Msa0522350:CDS |
| AGAAGAACCGGAGGATGTAG+AGG | 0.566028 | 3_4:-75454664 | Msa0522350:CDS |
| CATGATTGATGAAGAAGACA+AGG | 0.583742 | 3_4:-75454640 | Msa0522350:CDS |
| GAATATCAACGCCATACTGA+AGG | 0.612580 | 3_4:-75454570 | Msa0522350:CDS |
| GGTGGAAGAAGAAGAACCGG+AGG | 0.688562 | 3_4:-75454673 | Msa0522350:CDS |
| TGTCATGGAAGAAAATACGG+TGG | 0.707922 | 3_4:-75454691 | Msa0522350:CDS |
| AATCCCCTAACCGAAACCCG+AGG | 0.727935 | 3_4:-75454896 | Msa0522350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATCAAAAAATATACA+TGG | + | chr3_4:75453649-75453668 | None:intergenic | 10.0% |
| !!! | TTAAAACTTTTAAAACATAA+GGG | + | chr3_4:75454377-75454396 | None:intergenic | 10.0% |
| !! | TAACTGTGTAAATTAAAAAA+TGG | + | chr3_4:75453541-75453560 | None:intergenic | 15.0% |
| !!! | AAATCACTTTTGTTAAAATA+GGG | + | chr3_4:75453683-75453702 | None:intergenic | 15.0% |
| !!! | AAAATCACTTTTGTTAAAAT+AGG | + | chr3_4:75453684-75453703 | None:intergenic | 15.0% |
| !!! | TTCAACTTGAAATAATATTT+TGG | + | chr3_4:75454093-75454112 | None:intergenic | 15.0% |
| !!! | AACACATTTTTTTTTTTTAG+AGG | - | chr3_4:75454135-75454154 | Msa0522350:intron | 15.0% |
| !! | TTAGACACTAAAAAAAATAT+AGG | - | chr3_4:75454302-75454321 | Msa0522350:intron | 15.0% |
| !! | AAAACCTAAAATAAACATAA+GGG | + | chr3_4:75454346-75454365 | None:intergenic | 15.0% |
| !! | TAAAACCTAAAATAAACATA+AGG | + | chr3_4:75454347-75454366 | None:intergenic | 15.0% |
| !!! | CTTAAAACTTTTAAAACATA+AGG | + | chr3_4:75454378-75454397 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAAAGTTTTAAGT+TGG | - | chr3_4:75454379-75454398 | Msa0522350:intron | 15.0% |
| !!! | TTTAAAACTTTAAAACGTAA+AGG | + | chr3_4:75454406-75454425 | None:intergenic | 15.0% |
| !!! | TATGTTTTAAAATTTCAAGT+TGG | + | chr3_4:75454636-75454655 | None:intergenic | 15.0% |
| !!! | ACTTGAAATTTTAAAACATA+AGG | - | chr3_4:75454636-75454655 | Msa0522350:CDS | 15.0% |
| !!! | CTTGAAATTTTAAAACATAA+GGG | - | chr3_4:75454637-75454656 | Msa0522350:CDS | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+AGG | - | chr3_4:75454666-75454685 | Msa0522350:CDS | 15.0% |
| !! | CATATAAATTAAACAAAGTA+AGG | + | chr3_4:75454829-75454848 | None:intergenic | 15.0% |
| !! | ATATTTACTTTAATTGTTGT+TGG | - | chr3_4:75455008-75455027 | Msa0522350:intron | 15.0% |
| !! | TATTACAAAAAGAAAAAAAC+AGG | - | chr3_4:75455502-75455521 | Msa0522350:intron | 15.0% |
| !! | TAAAATTGTCAAGATTATAA+CGG | + | chr3_4:75455776-75455795 | None:intergenic | 15.0% |
| !!! | TTCAATAAAAGATTTTTCTT+CGG | + | chr3_4:75456261-75456280 | None:intergenic | 15.0% |
| !!! | TACACACTTTTTTTTTTTTC+CGG | - | chr3_4:75453389-75453408 | Msa0522350:intron | 20.0% |
| !! | AAAAAATGGAAAAAGAGTTA+AGG | + | chr3_4:75453527-75453546 | None:intergenic | 20.0% |
| !! | ATTTACACAGTTAAATACTA+TGG | - | chr3_4:75453548-75453567 | Msa0522350:intron | 20.0% |
| !! | AGTATGAACACAAAATAATA+TGG | + | chr3_4:75453598-75453617 | None:intergenic | 20.0% |
| !!! | AAAGTGATTTTAGTTTTTCT+TGG | - | chr3_4:75453693-75453712 | Msa0522350:intron | 20.0% |
| !!! | AGTAAAATCTAAAATCTCAT+AGG | + | chr3_4:75453811-75453830 | None:intergenic | 20.0% |
| !!! | GTTTCTCCATTTTTAAATAT+GGG | + | chr3_4:75454071-75454090 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTGAAAATAAAGA+AGG | - | chr3_4:75454101-75454120 | Msa0522350:intron | 20.0% |
| !!! | TTCAAGTTGAAAATAAAGAA+GGG | - | chr3_4:75454102-75454121 | Msa0522350:intron | 20.0% |
| !! | AAACCTAAAATAAACATAAG+GGG | + | chr3_4:75454345-75454364 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGGTTTTAAGT+TGG | - | chr3_4:75454350-75454369 | Msa0522350:intron | 20.0% |
| !!! | ACGTTTTAAAGTTTTAAAGT+TGG | - | chr3_4:75454408-75454427 | Msa0522350:intron | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr3_4:75454664-75454683 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGATTTCAAGT+TGG | + | chr3_4:75454693-75454712 | None:intergenic | 20.0% |
| !! | TAAAGTTATTGTATTAGTGT+CGG | - | chr3_4:75455396-75455415 | Msa0522350:intron | 20.0% |
| !! | AAAATTGTCAAGATTATAAC+GGG | + | chr3_4:75455775-75455794 | None:intergenic | 20.0% |
| !!! | ACTTTTACCTATAGATAAAT+AGG | - | chr3_4:75455895-75455914 | Msa0522350:intron | 20.0% |
| !! | ATAAATGCCTATTTATCTAT+AGG | + | chr3_4:75455905-75455924 | None:intergenic | 20.0% |
| !!! | TCTAAATATTCTTTTTCTGT+AGG | + | chr3_4:75455975-75455994 | None:intergenic | 20.0% |
| !! | AGAAAAAGAATATTTAGAGA+CGG | - | chr3_4:75455977-75455996 | Msa0522350:intron | 20.0% |
| !! | TTAAAAAGAGGAAAAAACAT+TGG | + | chr3_4:75456018-75456037 | None:intergenic | 20.0% |
| !! | TTAAATTACTTTACAGTGTA+TGG | - | chr3_4:75456510-75456529 | Msa0522350:CDS | 20.0% |
| ! | GTGTGTAAAAGATGATTAAA+CGG | + | chr3_4:75453376-75453395 | None:intergenic | 25.0% |
| ! | AATCTCAATTAATAACATGC+CGG | + | chr3_4:75453411-75453430 | None:intergenic | 25.0% |
| !! | GTTCTAAATGAGAAAATAGA+AGG | + | chr3_4:75453438-75453457 | None:intergenic | 25.0% |
| !!! | ATTTTCTCATTTAGAACTCT+TGG | - | chr3_4:75453441-75453460 | Msa0522350:intron | 25.0% |
| !! | TGTTTGTGTTTTCTTTTGAT+TGG | - | chr3_4:75453465-75453484 | Msa0522350:intron | 25.0% |
| !! | GAAATTTTGTTAGACCTTAA+TGG | + | chr3_4:75453777-75453796 | None:intergenic | 25.0% |
| ! | TGAAACTTATAAAACACAAG+GGG | + | chr3_4:75453834-75453853 | None:intergenic | 25.0% |
| ! | CTGAAACTTATAAAACACAA+GGG | + | chr3_4:75453835-75453854 | None:intergenic | 25.0% |
| ! | ACTGAAACTTATAAAACACA+AGG | + | chr3_4:75453836-75453855 | None:intergenic | 25.0% |
| !! | ATAAGTCTTAAATTGAGTTG+TGG | + | chr3_4:75453865-75453884 | None:intergenic | 25.0% |
| ! | CTAATTTGGACTATAAACAA+TGG | - | chr3_4:75453928-75453947 | Msa0522350:intron | 25.0% |
| !! | CTATAAACAATGGATTTCAT+AGG | - | chr3_4:75453938-75453957 | Msa0522350:intron | 25.0% |
| ! | CTAAATTTGATCAATGCAAT+TGG | - | chr3_4:75453968-75453987 | Msa0522350:intron | 25.0% |
| ! | TGGAATCCCATATTTAAAAA+TGG | - | chr3_4:75454062-75454081 | Msa0522350:intron | 25.0% |
| !!! | GGTTTCTCCATTTTTAAATA+TGG | + | chr3_4:75454072-75454091 | None:intergenic | 25.0% |
| !!! | TCAAGTTGAAAATAAAGAAG+GGG | - | chr3_4:75454103-75454122 | Msa0522350:intron | 25.0% |
| ! | TGACACTAATAACTAAAGTT+CGG | - | chr3_4:75454190-75454209 | Msa0522350:intron | 25.0% |
| ! | TGATTGGAACAATATTTAAG+TGG | + | chr3_4:75454234-75454253 | None:intergenic | 25.0% |
| ! | AACAAAATACTTGGAAGAAA+AGG | - | chr3_4:75455068-75455087 | Msa0522350:intron | 25.0% |
| ! | ACAAAATACTTGGAAGAAAA+GGG | - | chr3_4:75455069-75455088 | Msa0522350:intron | 25.0% |
| ! | AAAAAACCCTATGAATTGAT+GGG | - | chr3_4:75455107-75455126 | Msa0522350:intron | 25.0% |
| ! | AATTGTCATGGAAGAAAATA+CGG | - | chr3_4:75455154-75455173 | Msa0522350:intron | 25.0% |
| !!! | TTGAAATGTTTTTGAGTTGT+TGG | + | chr3_4:75455320-75455339 | None:intergenic | 25.0% |
| ! | ACAGGTTATAAATTTGACAA+AGG | - | chr3_4:75455520-75455539 | Msa0522350:intron | 25.0% |
| ! | ATGAATAACATCAATACACT+CGG | + | chr3_4:75455629-75455648 | None:intergenic | 25.0% |
| !! | TGTCATTTAACAAAAGCTTA+TGG | + | chr3_4:75455711-75455730 | None:intergenic | 25.0% |
| ! | GGACATCAAAATTTAAAAAG+AGG | + | chr3_4:75456030-75456049 | None:intergenic | 25.0% |
| ! | TTAATAAAATCGCATATTCG+AGG | + | chr3_4:75456153-75456172 | None:intergenic | 25.0% |
| ! | TCTATGTATAAGAGAAAGTT+CGG | + | chr3_4:75456236-75456255 | None:intergenic | 25.0% |
| !! | TTATTGAACTCATTTCTAGA+TGG | - | chr3_4:75456273-75456292 | Msa0522350:intron | 25.0% |
| ! | ATTTCAAATTGAAGTTGTAG+TGG | - | chr3_4:75456315-75456334 | Msa0522350:intron | 25.0% |
| ! | CACTATAGTACCAAATTATA+AGG | + | chr3_4:75456467-75456486 | None:intergenic | 25.0% |
| ! | ATTCAAAAGCCTAATATTGA+GGG | + | chr3_4:75456611-75456630 | None:intergenic | 25.0% |
| ! | TATTCAAAAGCCTAATATTG+AGG | + | chr3_4:75456612-75456631 | None:intergenic | 25.0% |
| TCTGATTATAGAATATGCAG+TGG | - | chr3_4:75453488-75453507 | Msa0522350:intron | 30.0% | |
| GTGTCTAACAACTTCAAATA+AGG | + | chr3_4:75454290-75454309 | None:intergenic | 30.0% | |
| !! | TGACCCCTTATGTTTATTTT+AGG | - | chr3_4:75454339-75454358 | Msa0522350:intron | 30.0% |
| TTAAACTCAATATCATGTCG+TGG | + | chr3_4:75454472-75454491 | None:intergenic | 30.0% | |
| !!! | ATTTTTGGCTTTTGCATGTT+TGG | + | chr3_4:75454724-75454743 | None:intergenic | 30.0% |
| ! | AGAGAAGACTCGTATATTTT+TGG | + | chr3_4:75454739-75454758 | None:intergenic | 30.0% |
| ! | AATATACGAGTCTTCTCTTT+TGG | - | chr3_4:75454741-75454760 | Msa0522350:CDS | 30.0% |
| !!! | TTCTAGTTGCTTTTCTGTAA+AGG | + | chr3_4:75454878-75454897 | None:intergenic | 30.0% |
| ! | CTTTAATTGTTGTTGGTATC+TGG | - | chr3_4:75455015-75455034 | Msa0522350:intron | 30.0% |
| TCACATGAGAACAAAATACT+TGG | - | chr3_4:75455059-75455078 | Msa0522350:intron | 30.0% | |
| GAAAAAACCCTATGAATTGA+TGG | - | chr3_4:75455106-75455125 | Msa0522350:intron | 30.0% | |
| GAGAGAAACTAAAATTGTCA+TGG | - | chr3_4:75455142-75455161 | Msa0522350:intron | 30.0% | |
| !! | TTTCTTTTTCACCTTCAGTA+TGG | + | chr3_4:75455292-75455311 | None:intergenic | 30.0% |
| ! | TCACTTGTCACATATTGTTT+TGG | + | chr3_4:75455581-75455600 | None:intergenic | 30.0% |
| ! | TCGGTTTGTAAACAAGTTTA+GGG | + | chr3_4:75455610-75455629 | None:intergenic | 30.0% |
| !! | GAATATTTAGAGACGGATTT+TGG | - | chr3_4:75455984-75456003 | Msa0522350:intron | 30.0% |
| CAAGAAAATTCCATGAACAT+CGG | - | chr3_4:75456341-75456360 | Msa0522350:intron | 30.0% | |
| ATGCTGATGACAAAATTGAA+TGG | - | chr3_4:75456433-75456452 | Msa0522350:intron | 30.0% | |
| GGCAAGTATTCCTTATAATT+TGG | - | chr3_4:75456454-75456473 | Msa0522350:intron | 30.0% | |
| GCTTATTCTTACTTCTAAGT+TGG | + | chr3_4:75456575-75456594 | None:intergenic | 30.0% | |
| TAATGTTAGGTAGGAAGAGA+TGG | + | chr3_4:75453326-75453345 | None:intergenic | 35.0% | |
| TGTAGAAGCTAATGTTAGGT+AGG | + | chr3_4:75453335-75453354 | None:intergenic | 35.0% | |
| AGTCTGTAGAAGCTAATGTT+AGG | + | chr3_4:75453339-75453358 | None:intergenic | 35.0% | |
| CATGTCGCATATTGCTAATT+TGG | - | chr3_4:75453914-75453933 | Msa0522350:intron | 35.0% | |
| GTCCAAACTAACATGAATGA+AGG | - | chr3_4:75454018-75454037 | Msa0522350:intron | 35.0% | |
| CACCTTCATTCATGTTAGTT+TGG | + | chr3_4:75454023-75454042 | None:intergenic | 35.0% | |
| CAAACTAACATGAATGAAGG+TGG | - | chr3_4:75454021-75454040 | Msa0522350:intron | 35.0% | |
| AAGGTGGCAAGGTATATAAA+GGG | - | chr3_4:75454037-75454056 | Msa0522350:intron | 35.0% | |
| ! | GTTCGAGTTTGACATTTGAT+TGG | + | chr3_4:75454250-75454269 | None:intergenic | 35.0% |
| ! | AAGATTTGGGTTCACCATAT+GGG | + | chr3_4:75454557-75454576 | None:intergenic | 35.0% |
| ! | AAAGATTTGGGTTCACCATA+TGG | + | chr3_4:75454558-75454577 | None:intergenic | 35.0% |
| AGTTGACCGGTTAAAGATTT+GGG | + | chr3_4:75454570-75454589 | None:intergenic | 35.0% | |
| TCTGTAAAGGAAGAATGGAA+TGG | + | chr3_4:75454865-75454884 | None:intergenic | 35.0% | |
| ! | GCTTTTCTGTAAAGGAAGAA+TGG | + | chr3_4:75454870-75454889 | None:intergenic | 35.0% |
| AATGGCTACAAGGTAAAACA+AGG | - | chr3_4:75454978-75454997 | Msa0522350:intron | 35.0% | |
| CATGATTGATGAAGAAGACA+AGG | - | chr3_4:75455208-75455227 | Msa0522350:intron | 35.0% | |
| TAGTGTCTCTTAGTGTTTCA+CGG | + | chr3_4:75455356-75455375 | None:intergenic | 35.0% | |
| ACATGAACATGTGTTAGACA+TGG | - | chr3_4:75455419-75455438 | Msa0522350:intron | 35.0% | |
| !! | AAGTGTCGATGATAGATAGT+TGG | - | chr3_4:75455459-75455478 | Msa0522350:intron | 35.0% |
| ! | TGATAGATAGTTGGTGTACA+AGG | - | chr3_4:75455468-75455487 | Msa0522350:intron | 35.0% |
| ! | GATAGATAGTTGGTGTACAA+GGG | - | chr3_4:75455469-75455488 | Msa0522350:intron | 35.0% |
| ! | CTCGGTTTGTAAACAAGTTT+AGG | + | chr3_4:75455611-75455630 | None:intergenic | 35.0% |
| TGCACAATTGACAGCAAAAT+TGG | - | chr3_4:75455935-75455954 | Msa0522350:intron | 35.0% | |
| !! | TTGACAGCAAAATTGGTCTT+AGG | - | chr3_4:75455942-75455961 | Msa0522350:intron | 35.0% |
| AGGAAAAAACATTGGACCTA+CGG | + | chr3_4:75456010-75456029 | None:intergenic | 35.0% | |
| ! | TTTGATGTCCTCTAAGTTGA+AGG | - | chr3_4:75456040-75456059 | Msa0522350:intron | 35.0% |
| ! | GGTGGAATTTGCAAATTTTG+AGG | - | chr3_4:75456126-75456145 | Msa0522350:intron | 35.0% |
| ! | CGATGTTCATGGAATTTTCT+TGG | + | chr3_4:75456343-75456362 | None:intergenic | 35.0% |
| CAAATTCAAACCGATGTTCA+TGG | + | chr3_4:75456354-75456373 | None:intergenic | 35.0% | |
| ! | TCACTTTGTGTGTCTTCTTT+TGG | + | chr3_4:75456537-75456556 | None:intergenic | 35.0% |
| AGCTCAGATTCTGTATCTAG+TGG | + | chr3_4:75453236-75453255 | None:intergenic | 40.0% | |
| !!! | CTGTTTTAGCTACTGCCAAT+TGG | - | chr3_4:75453292-75453311 | Msa0522350:intron | 40.0% |
| GAGATGGAGATATCACCAAT+TGG | + | chr3_4:75453310-75453329 | None:intergenic | 40.0% | |
| TGTTAGACCTTAATGGCCAT+GGG | + | chr3_4:75453770-75453789 | None:intergenic | 40.0% | |
| TTGTTAGACCTTAATGGCCA+TGG | + | chr3_4:75453771-75453790 | None:intergenic | 40.0% | |
| TAACATGAATGAAGGTGGCA+AGG | - | chr3_4:75454026-75454045 | Msa0522350:intron | 40.0% | |
| GAAGGTGGCAAGGTATATAA+AGG | - | chr3_4:75454036-75454055 | Msa0522350:intron | 40.0% | |
| GGCAAGGTATATAAAGGGAA+TGG | - | chr3_4:75454042-75454061 | Msa0522350:intron | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | + | chr3_4:75454435-75454454 | None:intergenic | 40.0% |
| CTCAATATCATGTCGTGGAA+GGG | + | chr3_4:75454467-75454486 | None:intergenic | 40.0% | |
| ACTCAATATCATGTCGTGGA+AGG | + | chr3_4:75454468-75454487 | None:intergenic | 40.0% | |
| GTTAAATTCCACCACCCATA+TGG | - | chr3_4:75454540-75454559 | Msa0522350:CDS | 40.0% | |
| GGTGAACCCAAATCTTTAAC+CGG | - | chr3_4:75454561-75454580 | Msa0522350:CDS | 40.0% | |
| CAGTTGACCGGTTAAAGATT+TGG | + | chr3_4:75454571-75454590 | None:intergenic | 40.0% | |
| ATCTTTAACCGGTCAACTGA+CGG | - | chr3_4:75454572-75454591 | Msa0522350:CDS | 40.0% | |
| !! | GAGTCTTCTCTTTTGGTTGA+AGG | - | chr3_4:75454748-75454767 | Msa0522350:CDS | 40.0% |
| TCTCATGTGAGTGTTTGAGT+TGG | + | chr3_4:75455049-75455068 | None:intergenic | 40.0% | |
| GAAGAAAAGGGTTGCAGTTA+TGG | - | chr3_4:75455081-75455100 | Msa0522350:intron | 40.0% | |
| GCATCACCCATCAATTCATA+GGG | + | chr3_4:75455116-75455135 | None:intergenic | 40.0% | |
| TGCATCACCCATCAATTCAT+AGG | + | chr3_4:75455117-75455136 | None:intergenic | 40.0% | |
| TGTCATGGAAGAAAATACGG+TGG | - | chr3_4:75455157-75455176 | Msa0522350:intron | 40.0% | |
| TGATGAAGAAGACAAGGAAG+AGG | - | chr3_4:75455214-75455233 | Msa0522350:intron | 40.0% | |
| GAATATCAACGCCATACTGA+AGG | - | chr3_4:75455278-75455297 | Msa0522350:intron | 40.0% | |
| CAGGATTGTCCCTTACAATT+TGG | - | chr3_4:75455745-75455764 | Msa0522350:intron | 40.0% | |
| GATTGTCCCTTACAATTTGG+AGG | - | chr3_4:75455748-75455767 | Msa0522350:intron | 40.0% | |
| CTTCGATTGACGTTCATACA+GGG | + | chr3_4:75456102-75456121 | None:intergenic | 40.0% | |
| ACTTCGATTGACGTTCATAC+AGG | + | chr3_4:75456103-75456122 | None:intergenic | 40.0% | |
| ATGAACGTCAATCGAAGTGA+TGG | - | chr3_4:75456105-75456124 | Msa0522350:intron | 40.0% | |
| TACAAGCTTGTCATCACTCA+TGG | + | chr3_4:75456378-75456397 | None:intergenic | 40.0% | |
| AGCTTGTATAGCTATGAACC+CGG | - | chr3_4:75456390-75456409 | Msa0522350:intron | 40.0% | |
| TTTGATTATGCTGCAATCCC+GGG | + | chr3_4:75456411-75456430 | None:intergenic | 40.0% | |
| CTTTGATTATGCTGCAATCC+CGG | + | chr3_4:75456412-75456431 | None:intergenic | 40.0% | |
| TGTTGTCCTCCCTCAATATT+AGG | - | chr3_4:75456599-75456618 | Msa0522350:intron | 40.0% | |
| CAAAAGCCTAATATTGAGGG+AGG | + | chr3_4:75456608-75456627 | None:intergenic | 40.0% | |
| GTCCAAAACGTTACTCACGT+TGG | - | chr3_4:75454430-75454449 | Msa0522350:intron | 45.0% | |
| ! | ATTTGGGTTCACCATATGGG+TGG | + | chr3_4:75454554-75454573 | None:intergenic | 45.0% |
| GAACGCAAGGTTTGTGATCT+TGG | + | chr3_4:75454800-75454819 | None:intergenic | 45.0% | |
| ACCTTGTAGCCATTTGTCCT+CGG | + | chr3_4:75454972-75454991 | None:intergenic | 45.0% | |
| TACGGTGGAAGAAGAAGAAC+CGG | - | chr3_4:75455172-75455191 | Msa0522350:intron | 45.0% | |
| ATCATGTCCTCTACATCCTC+CGG | + | chr3_4:75455194-75455213 | None:intergenic | 45.0% | |
| TGAAGAAGACAAGGAAGAGG+AGG | - | chr3_4:75455217-75455236 | Msa0522350:intron | 45.0% | |
| ACGGGACCTCCAAATTGTAA+GGG | + | chr3_4:75455757-75455776 | None:intergenic | 45.0% | |
| AACGGGACCTCCAAATTGTA+AGG | + | chr3_4:75455758-75455777 | None:intergenic | 45.0% | |
| GATTGACGTTCATACAGGGT+CGG | + | chr3_4:75456098-75456117 | None:intergenic | 45.0% | |
| AACGTCAATCGAAGTGATGG+TGG | - | chr3_4:75456108-75456127 | Msa0522350:intron | 45.0% | |
| GCTTGTATAGCTATGAACCC+GGG | - | chr3_4:75456391-75456410 | Msa0522350:intron | 45.0% | |
| !!! | TTTTAGATTATTATTATTTT+TGG | - | chr3_4:75453730-75453749 | Msa0522350:intron | 5.0% |
| ! | GGAGTATCAATGTCGACCCA+TGG | - | chr3_4:75453751-75453770 | Msa0522350:intron | 50.0% |
| ATGTCGACCCATGGCCATTA+AGG | - | chr3_4:75453760-75453779 | Msa0522350:intron | 50.0% | |
| TTAACCGGTCAACTGACGGA+AGG | - | chr3_4:75454576-75454595 | Msa0522350:CDS | 50.0% | |
| TAACCGGTCAACTGACGGAA+GGG | - | chr3_4:75454577-75454596 | Msa0522350:CDS | 50.0% | |
| AGTAAGGCACAGTGAACGCA+AGG | + | chr3_4:75454813-75454832 | None:intergenic | 50.0% | |
| TTGTCCTCGGGTTTCGGTTA+GGG | + | chr3_4:75454959-75454978 | None:intergenic | 50.0% | |
| TTTGTCCTCGGGTTTCGGTT+AGG | + | chr3_4:75454960-75454979 | None:intergenic | 50.0% | |
| AACCGAAACCCGAGGACAAA+TGG | - | chr3_4:75454960-75454979 | Msa0522350:intron | 50.0% | |
| AGCCATTTGTCCTCGGGTTT+CGG | + | chr3_4:75454965-75454984 | None:intergenic | 50.0% | |
| CCTTGTAGCCATTTGTCCTC+GGG | + | chr3_4:75454971-75454990 | None:intergenic | 50.0% | |
| AGAAGAACCGGAGGATGTAG+AGG | - | chr3_4:75455184-75455203 | Msa0522350:intron | 50.0% | |
| ACAATCCTGCACTCACAGTG+TGG | + | chr3_4:75455734-75455753 | None:intergenic | 50.0% | |
| !! | TAGAGACGGATTTTGGCCGT+AGG | - | chr3_4:75455991-75456010 | Msa0522350:intron | 50.0% |
| TGTAAGTGCAACAAGGCCCT+TGG | + | chr3_4:75456073-75456092 | None:intergenic | 50.0% | |
| GTCGGCATGTAAGTGCAACA+AGG | + | chr3_4:75456080-75456099 | None:intergenic | 50.0% | |
| TGGGTTCACCATATGGGTGG+TGG | + | chr3_4:75454551-75454570 | None:intergenic | 55.0% | |
| AGTCCCTTCCGTCAGTTGAC+CGG | + | chr3_4:75454583-75454602 | None:intergenic | 55.0% | |
| AATCCCCTAACCGAAACCCG+AGG | - | chr3_4:75454952-75454971 | Msa0522350:intron | 55.0% | |
| TGTCCTCGGGTTTCGGTTAG+GGG | + | chr3_4:75454958-75454977 | None:intergenic | 55.0% | |
| CCCGAGGACAAATGGCTACA+AGG | - | chr3_4:75454968-75454987 | Msa0522350:intron | 55.0% | |
| GGTGGAAGAAGAAGAACCGG+AGG | - | chr3_4:75455175-75455194 | Msa0522350:intron | 55.0% | |
| TGACACCACACTGTGAGTGC+AGG | - | chr3_4:75455726-75455745 | Msa0522350:intron | 55.0% | |
| GCAGAGGGCCTTCAACTTAG+AGG | + | chr3_4:75456051-75456070 | None:intergenic | 55.0% | |
| AAGTTGAAGGCCCTCTGCCA+AGG | - | chr3_4:75456053-75456072 | Msa0522350:intron | 55.0% | |
| AGTTGAAGGCCCTCTGCCAA+GGG | - | chr3_4:75456054-75456073 | Msa0522350:intron | 55.0% | |
| GCAACAAGGCCCTTGGCAGA+GGG | + | chr3_4:75456066-75456085 | None:intergenic | 60.0% | |
| TGCAACAAGGCCCTTGGCAG+AGG | + | chr3_4:75456067-75456086 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 75453204 | 75456666 | 75453204 | ID=Msa0522350;Name=Msa0522350 |
| chr3_4 | mRNA | 75453204 | 75456666 | 75453204 | ID=Msa0522350-mRNA-1;Parent=Msa0522350;Name=Msa0522350-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.6|0|0|5|0|122 |
| chr3_4 | exon | 75456661 | 75456666 | 75456661 | ID=Msa0522350-mRNA-1:exon:21663;Parent=Msa0522350-mRNA-1 |
| chr3_4 | exon | 75456510 | 75456569 | 75456510 | ID=Msa0522350-mRNA-1:exon:21662;Parent=Msa0522350-mRNA-1 |
| chr3_4 | exon | 75454881 | 75454928 | 75454881 | ID=Msa0522350-mRNA-1:exon:21661;Parent=Msa0522350-mRNA-1 |
| chr3_4 | exon | 75454527 | 75454772 | 75454527 | ID=Msa0522350-mRNA-1:exon:21660;Parent=Msa0522350-mRNA-1 |
| chr3_4 | exon | 75453204 | 75453209 | 75453204 | ID=Msa0522350-mRNA-1:exon:21659;Parent=Msa0522350-mRNA-1 |
| chr3_4 | CDS | 75456661 | 75456666 | 75456661 | ID=Msa0522350-mRNA-1:cds;Parent=Msa0522350-mRNA-1 |
| chr3_4 | CDS | 75456510 | 75456569 | 75456510 | ID=Msa0522350-mRNA-1:cds;Parent=Msa0522350-mRNA-1 |
| chr3_4 | CDS | 75454881 | 75454928 | 75454881 | ID=Msa0522350-mRNA-1:cds;Parent=Msa0522350-mRNA-1 |
| chr3_4 | CDS | 75454527 | 75454772 | 75454527 | ID=Msa0522350-mRNA-1:cds;Parent=Msa0522350-mRNA-1 |
| chr3_4 | CDS | 75453204 | 75453209 | 75453204 | ID=Msa0522350-mRNA-1:cds;Parent=Msa0522350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
