Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478260 | AES73909.1 | 89.706 | 136 | 10 | 1 | 23 | 154 | 1 | 136 | 1.09e-60 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478260 | G7J409 | 89.706 | 136 | 10 | 1 | 23 | 154 | 1 | 136 | 5.21e-61 | 194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0406000 | Msa0478260 | 0.801925 | 7.155162e-49 | -8.615850e-47 |
| Msa0451400 | Msa0478260 | 0.830322 | 3.135202e-55 | -8.615850e-47 |
| Msa0478260 | Msa0522350 | 0.902621 | 8.038005e-79 | -8.615850e-47 |
| Msa0478260 | Msa0594090 | 0.801268 | 9.753527e-49 | -8.615850e-47 |
| Msa0478260 | Msa1201160 | 0.803557 | 3.292865e-49 | -8.615850e-47 |
| Msa0478260 | Msa1228190 | 0.800944 | 1.136219e-48 | -8.615850e-47 |
| Msa0478260 | Msa1374550 | 0.801772 | 7.691919e-49 | -8.615850e-47 |
| Msa0359250 | Msa0478260 | 0.800714 | 1.265923e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478260 | MtrunA17_Chr3g0140701 | 85.393 | 89 | 9 | 1 | 70 | 154 | 4 | 92 | 1.22e-27 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478260 | AT2G22795.3 | 55.556 | 45 | 20 | 0 | 23 | 67 | 1 | 45 | 2.18e-12 | 63.9 |
| Msa0478260 | AT2G22795.1 | 55.556 | 45 | 20 | 0 | 23 | 67 | 1 | 45 | 2.22e-12 | 63.9 |
| Msa0478260 | AT2G22795.2 | 55.556 | 45 | 20 | 0 | 23 | 67 | 1 | 45 | 2.25e-12 | 63.9 |
Find 34 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAATTGTTGTTGGTATC+TGG | 0.241723 | 3_3:-82754847 | Msa0478260:CDS |
| TGCATCACCCATCAATTCAT+AGG | 0.318130 | 3_3:+82754748 | None:intergenic |
| TTGTCCTCGGGTTTCGGTTA+GGG | 0.326888 | 3_3:+82754906 | None:intergenic |
| TTTGTCCTCGGGTTTCGGTT+AGG | 0.335496 | 3_3:+82754905 | None:intergenic |
| GAAGAAAAGGGTTGCAGTTA+TGG | 0.338875 | 3_3:-82754781 | Msa0478260:CDS |
| AGCCATTTGTCCTCGGGTTT+CGG | 0.344200 | 3_3:+82754900 | None:intergenic |
| AACAAAATACTTGGAAGAAA+AGG | 0.345405 | 3_3:-82754794 | Msa0478260:CDS |
| ATATTTACTTTAATTGTTGT+TGG | 0.383772 | 3_3:-82754854 | Msa0478260:CDS |
| ACCTTGTAGCCATTTGTCCT+CGG | 0.403216 | 3_3:+82754893 | None:intergenic |
| AACCGAAACCCGAGGACAAA+TGG | 0.448199 | 3_3:-82754902 | Msa0478260:CDS |
| AATTGTCATGGAAGAAAATA+CGG | 0.459077 | 3_3:-82754708 | Msa0478260:CDS |
| CCTTGTAGCCATTTGTCCTC+GGG | 0.464410 | 3_3:+82754894 | None:intergenic |
| ACAAAATACTTGGAAGAAAA+GGG | 0.479194 | 3_3:-82754793 | Msa0478260:CDS |
| TGTCCTCGGGTTTCGGTTAG+GGG | 0.488701 | 3_3:+82754907 | None:intergenic |
| TACGGTGGAAGAAGAAGAAC+CGG | 0.494025 | 3_3:-82754690 | Msa0478260:CDS |
| TAATGTTAGGTAGGAAGAGA+TGG | 0.496606 | 3_3:+82756547 | None:intergenic |
| TGATGAAGAAGACAAGGAAG+AGG | 0.497163 | 3_3:-82754648 | Msa0478260:CDS |
| GCATCACCCATCAATTCATA+GGG | 0.502264 | 3_3:+82754749 | None:intergenic |
| AGTCTGTAGAAGCTAATGTT+AGG | 0.505407 | 3_3:+82756534 | None:intergenic |
| ATCATGTCCTCTACATCCTC+CGG | 0.509155 | 3_3:+82754671 | None:intergenic |
| CCCGAGGACAAATGGCTACA+AGG | 0.515828 | 3_3:-82754894 | Msa0478260:CDS |
| TGAAGAAGACAAGGAAGAGG+AGG | 0.528770 | 3_3:-82754645 | Msa0478260:CDS |
| TCACATGAGAACAAAATACT+TGG | 0.531366 | 3_3:-82754803 | Msa0478260:CDS |
| TGTAGAAGCTAATGTTAGGT+AGG | 0.534705 | 3_3:+82756538 | None:intergenic |
| GAGATGGAGATATCACCAAT+TGG | 0.550522 | 3_3:+82756563 | None:intergenic |
| GAGAGAAACTAAAATTGTCA+TGG | 0.550561 | 3_3:-82754720 | Msa0478260:CDS |
| AGAAGAACCGGAGGATGTAG+AGG | 0.566028 | 3_3:-82754678 | Msa0478260:CDS |
| CATGATTGATGAAGAAGACA+AGG | 0.583742 | 3_3:-82754654 | Msa0478260:CDS |
| TCTCATGTGAGTGTTTGAGT+TGG | 0.585284 | 3_3:+82754816 | None:intergenic |
| GAATATCAACGCCATACTGA+AGG | 0.612580 | 3_3:-82754584 | Msa0478260:CDS |
| AATGGCTACAAGGTAAAACA+AGG | 0.673320 | 3_3:-82754884 | Msa0478260:CDS |
| GGTGGAAGAAGAAGAACCGG+AGG | 0.688562 | 3_3:-82754687 | Msa0478260:CDS |
| TGTCATGGAAGAAAATACGG+TGG | 0.707922 | 3_3:-82754705 | Msa0478260:CDS |
| AATCCCCTAACCGAAACCCG+AGG | 0.727935 | 3_3:-82754910 | Msa0478260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATCAAAAAATATACA+TGG | + | chr3_3:82753658-82753677 | None:intergenic | 10.0% |
| !!! | TTAAAACTTTTAAAACATAA+GGG | + | chr3_3:82754397-82754416 | None:intergenic | 10.0% |
| !! | TAACTGTGTAAATTAAAAAA+TGG | + | chr3_3:82753550-82753569 | None:intergenic | 15.0% |
| !!! | AAATCACTTTTGTTAAAATA+GGG | + | chr3_3:82753692-82753711 | None:intergenic | 15.0% |
| !!! | AAAATCACTTTTGTTAAAAT+AGG | + | chr3_3:82753693-82753712 | None:intergenic | 15.0% |
| !!! | TTCAACTTGAAATAATATTT+TGG | + | chr3_3:82754114-82754133 | None:intergenic | 15.0% |
| !!! | AAACACATTTTTTTTTTTAG+AGG | - | chr3_3:82754155-82754174 | Msa0478260:intron | 15.0% |
| !! | TTAGACACTAAAAAAAATAT+AGG | - | chr3_3:82754322-82754341 | Msa0478260:intron | 15.0% |
| !! | AAAACCTAAAATAAACATAA+GGG | + | chr3_3:82754366-82754385 | None:intergenic | 15.0% |
| !! | TAAAACCTAAAATAAACATA+AGG | + | chr3_3:82754367-82754386 | None:intergenic | 15.0% |
| !!! | CTTAAAACTTTTAAAACATA+AGG | + | chr3_3:82754398-82754417 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAAAGTTTTAAGT+TGG | - | chr3_3:82754399-82754418 | Msa0478260:intron | 15.0% |
| !!! | TTTAAAACTTTAAAACGTAA+AGG | + | chr3_3:82754426-82754445 | None:intergenic | 15.0% |
| !!! | TATGTTTTAAAATTTCAAGT+TGG | + | chr3_3:82754656-82754675 | None:intergenic | 15.0% |
| !!! | ACTTGAAATTTTAAAACATA+AGG | - | chr3_3:82754656-82754675 | Msa0478260:CDS | 15.0% |
| !!! | CTTGAAATTTTAAAACATAA+GGG | - | chr3_3:82754657-82754676 | Msa0478260:CDS | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+AGG | - | chr3_3:82754686-82754705 | Msa0478260:CDS | 15.0% |
| !! | CATATAAATTAAACAAAGTA+AGG | + | chr3_3:82754849-82754868 | None:intergenic | 15.0% |
| !! | ATATTTACTTTAATTGTTGT+TGG | - | chr3_3:82755028-82755047 | Msa0478260:intron | 15.0% |
| !! | TATTACAAAAAGAAAAAAAC+AGG | - | chr3_3:82755522-82755541 | Msa0478260:intron | 15.0% |
| !! | TAAAATTGTCAAGATTATAA+CGG | + | chr3_3:82755796-82755815 | None:intergenic | 15.0% |
| !!! | TTCAATAAAAGATTTTTCTT+CGG | + | chr3_3:82756283-82756302 | None:intergenic | 15.0% |
| !!! | TTTTACACACTTTTTTTTTC+CGG | - | chr3_3:82753398-82753417 | Msa0478260:intron | 20.0% |
| !! | AAAAAATGGAAAAAGAGTTA+AGG | + | chr3_3:82753536-82753555 | None:intergenic | 20.0% |
| !! | ATTTACACAGTTAAATACTA+TGG | - | chr3_3:82753557-82753576 | Msa0478260:intron | 20.0% |
| !! | AGTATGAACACAAAATAATA+TGG | + | chr3_3:82753607-82753626 | None:intergenic | 20.0% |
| !!! | AAAGTGATTTTAGTTTTTCT+TGG | - | chr3_3:82753702-82753721 | Msa0478260:intron | 20.0% |
| !!! | AGTAAAATCTAAAATCTCAT+AGG | + | chr3_3:82753820-82753839 | None:intergenic | 20.0% |
| !!! | GTTTCTCCATTTTTAAATAT+GGG | + | chr3_3:82754092-82754111 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTGAAAATAAAGA+AGG | - | chr3_3:82754122-82754141 | Msa0478260:intron | 20.0% |
| !!! | TTCAAGTTGAAAATAAAGAA+GGG | - | chr3_3:82754123-82754142 | Msa0478260:intron | 20.0% |
| !! | AAACCTAAAATAAACATAAG+GGG | + | chr3_3:82754365-82754384 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGGTTTTAAGT+TGG | - | chr3_3:82754370-82754389 | Msa0478260:intron | 20.0% |
| !!! | ACGTTTTAAAGTTTTAAAGT+TGG | - | chr3_3:82754428-82754447 | Msa0478260:intron | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr3_3:82754684-82754703 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGATTTCAAGT+TGG | + | chr3_3:82754713-82754732 | None:intergenic | 20.0% |
| !! | TAAAGTTATTGTATTAGTGT+CGG | - | chr3_3:82755416-82755435 | Msa0478260:intron | 20.0% |
| !! | AAAATTGTCAAGATTATAAC+GGG | + | chr3_3:82755795-82755814 | None:intergenic | 20.0% |
| !!! | ACTTTTACCTATAGATAAAT+AGG | - | chr3_3:82755912-82755931 | Msa0478260:intron | 20.0% |
| !! | ATAAATGCCTATTTATCTAT+AGG | + | chr3_3:82755922-82755941 | None:intergenic | 20.0% |
| !!! | TCTAAATATTCTTTTTCTGT+AGG | + | chr3_3:82755992-82756011 | None:intergenic | 20.0% |
| !! | AGAAAAAGAATATTTAGAGA+CGG | - | chr3_3:82755994-82756013 | Msa0478260:intron | 20.0% |
| !! | TTAAATTACTTTACAGTGTA+TGG | - | chr3_3:82756532-82756551 | Msa0478260:CDS | 20.0% |
| ! | GTGTGTAAAAGATGATTAAA+CGG | + | chr3_3:82753388-82753407 | None:intergenic | 25.0% |
| ! | AATCTCAATTAATAACATGC+CGG | + | chr3_3:82753420-82753439 | None:intergenic | 25.0% |
| !! | GTTCTAAATGAGAAAATAGA+AGG | + | chr3_3:82753447-82753466 | None:intergenic | 25.0% |
| !!! | ATTTTCTCATTTAGAACTCT+TGG | - | chr3_3:82753450-82753469 | Msa0478260:intron | 25.0% |
| !! | TGTTTGTGTTTTCTTTTGAT+TGG | - | chr3_3:82753474-82753493 | Msa0478260:intron | 25.0% |
| !! | GAAATTTTGTTAGACCTTAA+TGG | + | chr3_3:82753786-82753805 | None:intergenic | 25.0% |
| ! | TGAAACTTATAAAACACAAG+GGG | + | chr3_3:82753843-82753862 | None:intergenic | 25.0% |
| ! | CTGAAACTTATAAAACACAA+GGG | + | chr3_3:82753844-82753863 | None:intergenic | 25.0% |
| ! | ACTGAAACTTATAAAACACA+AGG | + | chr3_3:82753845-82753864 | None:intergenic | 25.0% |
| !! | ATAAGTCTTAAATTGAGTTG+TGG | + | chr3_3:82753874-82753893 | None:intergenic | 25.0% |
| ! | CTAATTTGGACTATAAACAA+TGG | - | chr3_3:82753949-82753968 | Msa0478260:intron | 25.0% |
| !! | CTATAAACAATGGATTTCAT+AGG | - | chr3_3:82753959-82753978 | Msa0478260:intron | 25.0% |
| ! | CTAAATTTGATCAATGCAAT+TGG | - | chr3_3:82753989-82754008 | Msa0478260:intron | 25.0% |
| ! | TGGAATCCCATATTTAAAAA+TGG | - | chr3_3:82754083-82754102 | Msa0478260:intron | 25.0% |
| !!! | GGTTTCTCCATTTTTAAATA+TGG | + | chr3_3:82754093-82754112 | None:intergenic | 25.0% |
| !!! | TCAAGTTGAAAATAAAGAAG+GGG | - | chr3_3:82754124-82754143 | Msa0478260:intron | 25.0% |
| ! | TGACACTAATAACTAAAGTT+CGG | - | chr3_3:82754210-82754229 | Msa0478260:intron | 25.0% |
| ! | TGATTGGAACAATATTTAAG+TGG | + | chr3_3:82754254-82754273 | None:intergenic | 25.0% |
| ! | AACAAAATACTTGGAAGAAA+AGG | - | chr3_3:82755088-82755107 | Msa0478260:intron | 25.0% |
| ! | ACAAAATACTTGGAAGAAAA+GGG | - | chr3_3:82755089-82755108 | Msa0478260:intron | 25.0% |
| ! | AAAAAACCCTATGAATTGAT+GGG | - | chr3_3:82755127-82755146 | Msa0478260:intron | 25.0% |
| ! | AATTGTCATGGAAGAAAATA+CGG | - | chr3_3:82755174-82755193 | Msa0478260:intron | 25.0% |
| !!! | TTGAAATGTTTTTGAGTTGT+TGG | + | chr3_3:82755340-82755359 | None:intergenic | 25.0% |
| ! | ACAGGTTATAAATTTGACAA+AGG | - | chr3_3:82755540-82755559 | Msa0478260:intron | 25.0% |
| ! | ATGAATAACATCAATACACT+CGG | + | chr3_3:82755649-82755668 | None:intergenic | 25.0% |
| !! | TGTCATTTAACAAAAGCTTA+TGG | + | chr3_3:82755731-82755750 | None:intergenic | 25.0% |
| ! | GGACATCAAAATTTAAAAAG+AGG | + | chr3_3:82756047-82756066 | None:intergenic | 25.0% |
| ! | TCTATGTATAAGAGAAAGTT+CGG | + | chr3_3:82756258-82756277 | None:intergenic | 25.0% |
| !! | TTATTGAACTCATTTCTAGA+TGG | - | chr3_3:82756295-82756314 | Msa0478260:intron | 25.0% |
| ! | ATTTCAAATTGAAGTTGTAG+TGG | - | chr3_3:82756337-82756356 | Msa0478260:intron | 25.0% |
| ! | CACTATAGTACCAAATTATA+AGG | + | chr3_3:82756489-82756508 | None:intergenic | 25.0% |
| ! | ATTCAAAAGCCTAATATTGA+GGG | + | chr3_3:82756633-82756652 | None:intergenic | 25.0% |
| ! | TATTCAAAAGCCTAATATTG+AGG | + | chr3_3:82756634-82756653 | None:intergenic | 25.0% |
| TCTGATTATAGAATATGCAG+TGG | - | chr3_3:82753497-82753516 | Msa0478260:intron | 30.0% | |
| ATGTTACGACATTGCTAATT+TGG | - | chr3_3:82753935-82753954 | Msa0478260:intron | 30.0% | |
| GTGTCTAACAACTTCAAATA+AGG | + | chr3_3:82754310-82754329 | None:intergenic | 30.0% | |
| !! | TGACCCCTTATGTTTATTTT+AGG | - | chr3_3:82754359-82754378 | Msa0478260:intron | 30.0% |
| TTAAACTCAATATCATGTCG+TGG | + | chr3_3:82754492-82754511 | None:intergenic | 30.0% | |
| !!! | ATTTTTGGCTTTTGCATGTT+TGG | + | chr3_3:82754744-82754763 | None:intergenic | 30.0% |
| ! | AGAGAAGACTCGTATATTTT+TGG | + | chr3_3:82754759-82754778 | None:intergenic | 30.0% |
| ! | AATATACGAGTCTTCTCTTT+TGG | - | chr3_3:82754761-82754780 | Msa0478260:CDS | 30.0% |
| !!! | TTCTAGTTGCTTTTCTGTAA+AGG | + | chr3_3:82754898-82754917 | None:intergenic | 30.0% |
| ! | CTTTAATTGTTGTTGGTATC+TGG | - | chr3_3:82755035-82755054 | Msa0478260:intron | 30.0% |
| TCACATGAGAACAAAATACT+TGG | - | chr3_3:82755079-82755098 | Msa0478260:intron | 30.0% | |
| GAAAAAACCCTATGAATTGA+TGG | - | chr3_3:82755126-82755145 | Msa0478260:intron | 30.0% | |
| GAGAGAAACTAAAATTGTCA+TGG | - | chr3_3:82755162-82755181 | Msa0478260:intron | 30.0% | |
| !! | TTTCTTTTTCACCTTCAGTA+TGG | + | chr3_3:82755312-82755331 | None:intergenic | 30.0% |
| ! | TCACTTGTCACATATTGTTT+TGG | + | chr3_3:82755601-82755620 | None:intergenic | 30.0% |
| ! | TCGGTTTGTAAACAAGTTTA+GGG | + | chr3_3:82755630-82755649 | None:intergenic | 30.0% |
| !! | GAATATTTAGAGACGGATTT+TGG | - | chr3_3:82756001-82756020 | Msa0478260:intron | 30.0% |
| AGGAAAAAACATTGTACCTA+CGG | + | chr3_3:82756027-82756046 | None:intergenic | 30.0% | |
| TAAAATCGCATATTCTATCG+AGG | + | chr3_3:82756170-82756189 | None:intergenic | 30.0% | |
| CAAGAAAATTCCATGAACAT+CGG | - | chr3_3:82756363-82756382 | Msa0478260:intron | 30.0% | |
| ATGCTGATGACAAAATTGAA+TGG | - | chr3_3:82756455-82756474 | Msa0478260:intron | 30.0% | |
| GGCAAGTATTCCTTATAATT+TGG | - | chr3_3:82756476-82756495 | Msa0478260:intron | 30.0% | |
| GCTTATTCTTACTTCTAAGT+TGG | + | chr3_3:82756597-82756616 | None:intergenic | 30.0% | |
| TAATGTTAGGTAGGAAGAGA+TGG | + | chr3_3:82753338-82753357 | None:intergenic | 35.0% | |
| TGTAGAAGCTAATGTTAGGT+AGG | + | chr3_3:82753347-82753366 | None:intergenic | 35.0% | |
| AGTCTGTAGAAGCTAATGTT+AGG | + | chr3_3:82753351-82753370 | None:intergenic | 35.0% | |
| GTCCAAACTAACATGAATGA+AGG | - | chr3_3:82754039-82754058 | Msa0478260:intron | 35.0% | |
| CACCTTCATTCATGTTAGTT+TGG | + | chr3_3:82754044-82754063 | None:intergenic | 35.0% | |
| CAAACTAACATGAATGAAGG+TGG | - | chr3_3:82754042-82754061 | Msa0478260:intron | 35.0% | |
| AAGGTGGCAAGGTATATAAA+GGG | - | chr3_3:82754058-82754077 | Msa0478260:intron | 35.0% | |
| ! | GTTCGAGTTTGACATTTGAT+TGG | + | chr3_3:82754270-82754289 | None:intergenic | 35.0% |
| ! | AAGATTTGGGTTCACCATAT+GGG | + | chr3_3:82754577-82754596 | None:intergenic | 35.0% |
| ! | AAAGATTTGGGTTCACCATA+TGG | + | chr3_3:82754578-82754597 | None:intergenic | 35.0% |
| AGTTGACCGGTTAAAGATTT+GGG | + | chr3_3:82754590-82754609 | None:intergenic | 35.0% | |
| TCTGTAAAGGAAGAATGGAA+TGG | + | chr3_3:82754885-82754904 | None:intergenic | 35.0% | |
| ! | GCTTTTCTGTAAAGGAAGAA+TGG | + | chr3_3:82754890-82754909 | None:intergenic | 35.0% |
| AATGGCTACAAGGTAAAACA+AGG | - | chr3_3:82754998-82755017 | Msa0478260:intron | 35.0% | |
| CATGATTGATGAAGAAGACA+AGG | - | chr3_3:82755228-82755247 | Msa0478260:intron | 35.0% | |
| TAGTGTCTCTTAGTGTTTCA+CGG | + | chr3_3:82755376-82755395 | None:intergenic | 35.0% | |
| ACATGAACATGTGTTAGACA+TGG | - | chr3_3:82755439-82755458 | Msa0478260:intron | 35.0% | |
| !! | AAGTGTCGATGATAGATAGT+TGG | - | chr3_3:82755479-82755498 | Msa0478260:intron | 35.0% |
| ! | TGATAGATAGTTGGTGTACA+AGG | - | chr3_3:82755488-82755507 | Msa0478260:intron | 35.0% |
| ! | GATAGATAGTTGGTGTACAA+GGG | - | chr3_3:82755489-82755508 | Msa0478260:intron | 35.0% |
| ! | CTCGGTTTGTAAACAAGTTT+AGG | + | chr3_3:82755631-82755650 | None:intergenic | 35.0% |
| TGCACAATTGACAGCAAAAT+TGG | - | chr3_3:82755952-82755971 | Msa0478260:intron | 35.0% | |
| !! | TTGACAGCAAAATTGGTCTT+AGG | - | chr3_3:82755959-82755978 | Msa0478260:intron | 35.0% |
| ! | TTTGATGTCCTCTAAGTTGA+AGG | - | chr3_3:82756057-82756076 | Msa0478260:intron | 35.0% |
| ! | GGTGGAATTTGCAAATTTTG+AGG | - | chr3_3:82756143-82756162 | Msa0478260:intron | 35.0% |
| ! | CGATGTTCATGGAATTTTCT+TGG | + | chr3_3:82756365-82756384 | None:intergenic | 35.0% |
| CAAATTCAAACCGATGTTCA+TGG | + | chr3_3:82756376-82756395 | None:intergenic | 35.0% | |
| ! | TCACTTTGTGTGTCTTCTTT+TGG | + | chr3_3:82756559-82756578 | None:intergenic | 35.0% |
| ! | AGCTCTGATTCTGTATCTAG+TGG | + | chr3_3:82753248-82753267 | None:intergenic | 40.0% |
| !!! | CTGTTTTAGCTACTGCCAAT+TGG | - | chr3_3:82753304-82753323 | Msa0478260:intron | 40.0% |
| GAGATGGAGATATCACCAAT+TGG | + | chr3_3:82753322-82753341 | None:intergenic | 40.0% | |
| TGTTAGACCTTAATGGCCAT+GGG | + | chr3_3:82753779-82753798 | None:intergenic | 40.0% | |
| TTGTTAGACCTTAATGGCCA+TGG | + | chr3_3:82753780-82753799 | None:intergenic | 40.0% | |
| TAACATGAATGAAGGTGGCA+AGG | - | chr3_3:82754047-82754066 | Msa0478260:intron | 40.0% | |
| GAAGGTGGCAAGGTATATAA+AGG | - | chr3_3:82754057-82754076 | Msa0478260:intron | 40.0% | |
| GGCAAGGTATATAAAGGGAA+TGG | - | chr3_3:82754063-82754082 | Msa0478260:intron | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | + | chr3_3:82754455-82754474 | None:intergenic | 40.0% |
| CTCAATATCATGTCGTGGAA+GGG | + | chr3_3:82754487-82754506 | None:intergenic | 40.0% | |
| ACTCAATATCATGTCGTGGA+AGG | + | chr3_3:82754488-82754507 | None:intergenic | 40.0% | |
| GTTAAATTCCACCACCCATA+TGG | - | chr3_3:82754560-82754579 | Msa0478260:CDS | 40.0% | |
| GGTGAACCCAAATCTTTAAC+CGG | - | chr3_3:82754581-82754600 | Msa0478260:CDS | 40.0% | |
| CAGTTGACCGGTTAAAGATT+TGG | + | chr3_3:82754591-82754610 | None:intergenic | 40.0% | |
| ATCTTTAACCGGTCAACTGA+CGG | - | chr3_3:82754592-82754611 | Msa0478260:CDS | 40.0% | |
| !! | GAGTCTTCTCTTTTGGTTGA+AGG | - | chr3_3:82754768-82754787 | Msa0478260:CDS | 40.0% |
| TCTCATGTGAGTGTTTGAGT+TGG | + | chr3_3:82755069-82755088 | None:intergenic | 40.0% | |
| GAAGAAAAGGGTTGCAGTTA+TGG | - | chr3_3:82755101-82755120 | Msa0478260:intron | 40.0% | |
| GCATCACCCATCAATTCATA+GGG | + | chr3_3:82755136-82755155 | None:intergenic | 40.0% | |
| TGCATCACCCATCAATTCAT+AGG | + | chr3_3:82755137-82755156 | None:intergenic | 40.0% | |
| TGTCATGGAAGAAAATACGG+TGG | - | chr3_3:82755177-82755196 | Msa0478260:intron | 40.0% | |
| TGATGAAGAAGACAAGGAAG+AGG | - | chr3_3:82755234-82755253 | Msa0478260:intron | 40.0% | |
| GAATATCAACGCCATACTGA+AGG | - | chr3_3:82755298-82755317 | Msa0478260:intron | 40.0% | |
| CAGGATTGTCCCTTACAATT+TGG | - | chr3_3:82755765-82755784 | Msa0478260:intron | 40.0% | |
| GATTGTCCCTTACAATTTGG+AGG | - | chr3_3:82755768-82755787 | Msa0478260:intron | 40.0% | |
| CTTCGATTGACGTTCATACA+GGG | + | chr3_3:82756119-82756138 | None:intergenic | 40.0% | |
| ACTTCGATTGACGTTCATAC+AGG | + | chr3_3:82756120-82756139 | None:intergenic | 40.0% | |
| ATGAACGTCAATCGAAGTGA+TGG | - | chr3_3:82756122-82756141 | Msa0478260:intron | 40.0% | |
| TACAAGCTTGTCATCACTCA+TGG | + | chr3_3:82756400-82756419 | None:intergenic | 40.0% | |
| AGCTTGTATAGCTATGAACC+CGG | - | chr3_3:82756412-82756431 | Msa0478260:intron | 40.0% | |
| TTTGATTATGCTGCAATCCC+GGG | + | chr3_3:82756433-82756452 | None:intergenic | 40.0% | |
| CTTTGATTATGCTGCAATCC+CGG | + | chr3_3:82756434-82756453 | None:intergenic | 40.0% | |
| TGTTGTCCTCCCTCAATATT+AGG | - | chr3_3:82756621-82756640 | Msa0478260:intron | 40.0% | |
| CAAAAGCCTAATATTGAGGG+AGG | + | chr3_3:82756630-82756649 | None:intergenic | 40.0% | |
| GTCCAAAACGTTACTCACGT+TGG | - | chr3_3:82754450-82754469 | Msa0478260:intron | 45.0% | |
| ! | ATTTGGGTTCACCATATGGG+TGG | + | chr3_3:82754574-82754593 | None:intergenic | 45.0% |
| GAACGCAAGGTTTGTGATCT+TGG | + | chr3_3:82754820-82754839 | None:intergenic | 45.0% | |
| ACCTTGTAGCCATTTGTCCT+CGG | + | chr3_3:82754992-82755011 | None:intergenic | 45.0% | |
| TACGGTGGAAGAAGAAGAAC+CGG | - | chr3_3:82755192-82755211 | Msa0478260:intron | 45.0% | |
| ATCATGTCCTCTACATCCTC+CGG | + | chr3_3:82755214-82755233 | None:intergenic | 45.0% | |
| TGAAGAAGACAAGGAAGAGG+AGG | - | chr3_3:82755237-82755256 | Msa0478260:intron | 45.0% | |
| ACGGGACCTCCAAATTGTAA+GGG | + | chr3_3:82755777-82755796 | None:intergenic | 45.0% | |
| AACGGGACCTCCAAATTGTA+AGG | + | chr3_3:82755778-82755797 | None:intergenic | 45.0% | |
| GATTGACGTTCATACAGGGT+CGG | + | chr3_3:82756115-82756134 | None:intergenic | 45.0% | |
| AACGTCAATCGAAGTGATGG+TGG | - | chr3_3:82756125-82756144 | Msa0478260:intron | 45.0% | |
| GCTTGTATAGCTATGAACCC+GGG | - | chr3_3:82756413-82756432 | Msa0478260:intron | 45.0% | |
| !!! | TTTTAGATTATTATTATTTT+TGG | - | chr3_3:82753739-82753758 | Msa0478260:intron | 5.0% |
| ! | GGAGTATCAATGTCGACCCA+TGG | - | chr3_3:82753760-82753779 | Msa0478260:intron | 50.0% |
| ATGTCGACCCATGGCCATTA+AGG | - | chr3_3:82753769-82753788 | Msa0478260:intron | 50.0% | |
| TTAACCGGTCAACTGACGGA+AGG | - | chr3_3:82754596-82754615 | Msa0478260:CDS | 50.0% | |
| TAACCGGTCAACTGACGGAA+GGG | - | chr3_3:82754597-82754616 | Msa0478260:CDS | 50.0% | |
| AGTAAGGCACAGTGAACGCA+AGG | + | chr3_3:82754833-82754852 | None:intergenic | 50.0% | |
| TTGTCCTCGGGTTTCGGTTA+GGG | + | chr3_3:82754979-82754998 | None:intergenic | 50.0% | |
| TTTGTCCTCGGGTTTCGGTT+AGG | + | chr3_3:82754980-82754999 | None:intergenic | 50.0% | |
| AACCGAAACCCGAGGACAAA+TGG | - | chr3_3:82754980-82754999 | Msa0478260:intron | 50.0% | |
| AGCCATTTGTCCTCGGGTTT+CGG | + | chr3_3:82754985-82755004 | None:intergenic | 50.0% | |
| CCTTGTAGCCATTTGTCCTC+GGG | + | chr3_3:82754991-82755010 | None:intergenic | 50.0% | |
| AGAAGAACCGGAGGATGTAG+AGG | - | chr3_3:82755204-82755223 | Msa0478260:intron | 50.0% | |
| ACAATCCTGCACTCACAGTG+TGG | + | chr3_3:82755754-82755773 | None:intergenic | 50.0% | |
| !! | TAGAGACGGATTTTGGCCGT+AGG | - | chr3_3:82756008-82756027 | Msa0478260:intron | 50.0% |
| TGTAAGTGCAACAAGGCCCT+TGG | + | chr3_3:82756090-82756109 | None:intergenic | 50.0% | |
| GTCGGCATGTAAGTGCAACA+AGG | + | chr3_3:82756097-82756116 | None:intergenic | 50.0% | |
| TGGGTTCACCATATGGGTGG+TGG | + | chr3_3:82754571-82754590 | None:intergenic | 55.0% | |
| AGTCCCTTCCGTCAGTTGAC+CGG | + | chr3_3:82754603-82754622 | None:intergenic | 55.0% | |
| AATCCCCTAACCGAAACCCG+AGG | - | chr3_3:82754972-82754991 | Msa0478260:intron | 55.0% | |
| TGTCCTCGGGTTTCGGTTAG+GGG | + | chr3_3:82754978-82754997 | None:intergenic | 55.0% | |
| CCCGAGGACAAATGGCTACA+AGG | - | chr3_3:82754988-82755007 | Msa0478260:intron | 55.0% | |
| GGTGGAAGAAGAAGAACCGG+AGG | - | chr3_3:82755195-82755214 | Msa0478260:intron | 55.0% | |
| TGACACCACACTGTGAGTGC+AGG | - | chr3_3:82755746-82755765 | Msa0478260:intron | 55.0% | |
| GCAGAGGGCCTTCAACTTAG+AGG | + | chr3_3:82756068-82756087 | None:intergenic | 55.0% | |
| AAGTTGAAGGCCCTCTGCCA+AGG | - | chr3_3:82756070-82756089 | Msa0478260:intron | 55.0% | |
| AGTTGAAGGCCCTCTGCCAA+GGG | - | chr3_3:82756071-82756090 | Msa0478260:intron | 55.0% | |
| GCAACAAGGCCCTTGGCAGA+GGG | + | chr3_3:82756083-82756102 | None:intergenic | 60.0% | |
| TGCAACAAGGCCCTTGGCAG+AGG | + | chr3_3:82756084-82756103 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82753216 | 82756688 | 82753216 | ID=Msa0478260;Name=Msa0478260 |
| chr3_3 | mRNA | 82753216 | 82756688 | 82753216 | ID=Msa0478260-mRNA-1;Parent=Msa0478260;Name=Msa0478260-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.6|0|0|5|0|154 |
| chr3_3 | exon | 82756683 | 82756688 | 82756683 | ID=Msa0478260-mRNA-1:exon:23191;Parent=Msa0478260-mRNA-1 |
| chr3_3 | exon | 82756532 | 82756591 | 82756532 | ID=Msa0478260-mRNA-1:exon:23190;Parent=Msa0478260-mRNA-1 |
| chr3_3 | exon | 82754756 | 82754942 | 82754756 | ID=Msa0478260-mRNA-1:exon:23189;Parent=Msa0478260-mRNA-1 |
| chr3_3 | exon | 82754541 | 82754743 | 82754541 | ID=Msa0478260-mRNA-1:exon:23188;Parent=Msa0478260-mRNA-1 |
| chr3_3 | exon | 82753216 | 82753221 | 82753216 | ID=Msa0478260-mRNA-1:exon:23187;Parent=Msa0478260-mRNA-1 |
| chr3_3 | CDS | 82756683 | 82756688 | 82756683 | ID=Msa0478260-mRNA-1:cds;Parent=Msa0478260-mRNA-1 |
| chr3_3 | CDS | 82756532 | 82756591 | 82756532 | ID=Msa0478260-mRNA-1:cds;Parent=Msa0478260-mRNA-1 |
| chr3_3 | CDS | 82754756 | 82754942 | 82754756 | ID=Msa0478260-mRNA-1:cds;Parent=Msa0478260-mRNA-1 |
| chr3_3 | CDS | 82754541 | 82754743 | 82754541 | ID=Msa0478260-mRNA-1:cds;Parent=Msa0478260-mRNA-1 |
| chr3_3 | CDS | 82753216 | 82753221 | 82753216 | ID=Msa0478260-mRNA-1:cds;Parent=Msa0478260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
