AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597790 MtrunA17_Chr4g0020671 96.560 436 15 0 1 436 1 436 0.0 862
Msa0597790 MtrunA17_Chr7g0273861 54.115 401 148 10 5 376 3 396 4.05e-126 372
Msa0597790 MtrunA17_Chr1g0172611 33.162 389 203 10 4 365 3 361 2.01e-44 159
Msa0597790 MtrunA17_Chr4g0045641 29.793 386 205 14 100 427 145 522 1.18e-33 132
Msa0597790 MtrunA17_Chr1g0181581 29.524 420 211 15 1 348 1 407 8.92e-32 126
Msa0597790 MtrunA17_Chr7g0263731 30.719 459 214 21 4 380 3 439 2.00e-29 119
Msa0597790 MtrunA17_Chr6g0462191 31.834 289 152 9 100 348 106 389 1.24e-27 114
Msa0597790 MtrunA17_Chr1g0200161 27.083 288 170 6 92 364 132 394 4.20e-24 104
Msa0597790 MtrunA17_Chr8g0346021 29.022 317 148 13 1 257 1 300 2.06e-22 99.8
Msa0597790 MtrunA17_Chr1g0204901 31.716 268 145 11 97 356 132 369 2.07e-21 96.3
Msa0597790 MtrunA17_Chr4g0025441 28.889 360 197 12 100 426 95 428 3.89e-21 95.1
Msa0597790 MtrunA17_Chr3g0126901 25.714 385 241 11 1 357 1 368 7.71e-21 94.4
Msa0597790 MtrunA17_Chr1g0146931 27.389 314 176 10 100 368 121 427 1.40e-18 87.8
Msa0597790 MtrunA17_Chr1g0203711 31.000 200 104 6 9 180 1 194 6.92e-18 85.5
Msa0597790 MtrunA17_Chr3g0135851 30.198 202 113 5 90 268 80 276 3.01e-17 83.6
Msa0597790 MtrunA17_Chr6g0472551 48.101 79 39 2 92 168 106 184 3.68e-17 83.6
Msa0597790 MtrunA17_Chr2g0283321 34.483 174 81 4 99 254 61 219 3.94e-17 81.6
Msa0597790 MtrunA17_Chr8g0389781 58.333 60 25 0 100 159 125 184 7.96e-17 82.4
Msa0597790 MtrunA17_Chr4g0057321 27.273 308 175 8 86 356 76 371 2.84e-16 80.5
Msa0597790 MtrunA17_Chr1g0166431 62.069 58 22 0 96 153 112 169 4.42e-16 80.1
Msa0597790 MtrunA17_Chr8g0340761 55.738 61 27 0 103 163 128 188 2.44e-15 77.4
Msa0597790 MtrunA17_Chr7g0273951 50.000 66 33 0 103 168 108 173 3.39e-15 77.0
Msa0597790 MtrunA17_Chr4g0060381 35.938 128 74 2 51 178 55 174 3.62e-15 77.8
Msa0597790 MtrunA17_Chr8g0371131 34.868 152 74 6 31 173 5 140 4.74e-15 72.0
Msa0597790 MtrunA17_Chr2g0330921 31.788 151 84 3 32 163 9 159 1.41e-14 74.7
Msa0597790 MtrunA17_Chr2g0316401 27.700 213 126 5 64 254 26 232 9.28e-13 68.9
Msa0597790 MtrunA17_Chr1g0156121 42.683 82 45 1 94 173 117 198 5.33e-12 68.2
Msa0597790 MtrunA17_Chr8g0342551 40.000 130 73 2 100 228 89 214 5.66e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597790 AT5G13460.1 47.771 471 178 19 4 436 3 443 3.01e-115 345
Msa0597790 AT5G03960.3 34.456 386 212 13 4 367 3 369 7.76e-39 145
Msa0597790 AT5G03960.2 34.456 386 212 13 4 367 3 369 7.76e-39 145
Msa0597790 AT3G52290.1 30.946 391 212 14 6 348 3 383 5.84e-38 143
Msa0597790 AT5G03960.1 34.197 386 212 14 4 367 3 368 1.12e-36 139
Msa0597790 AT2G43680.1 31.461 356 196 12 99 426 321 656 1.70e-36 142
Msa0597790 AT2G43680.4 31.373 357 197 12 98 426 319 655 1.71e-36 142
Msa0597790 AT2G43680.2 31.373 357 197 12 98 426 319 655 1.71e-36 142
Msa0597790 AT2G43680.3 31.373 357 197 12 98 426 319 655 1.71e-36 142
Msa0597790 AT2G43680.5 31.373 357 197 12 98 426 319 655 1.71e-36 142
Msa0597790 AT3G59690.2 34.286 280 151 9 99 356 167 435 7.73e-34 133
Msa0597790 AT3G59690.1 34.286 280 151 9 99 356 167 435 7.73e-34 133
Msa0597790 AT5G03040.1 27.981 411 231 14 1 351 1 406 5.74e-31 124
Msa0597790 AT5G03040.3 27.981 411 231 14 1 351 1 406 5.74e-31 124
Msa0597790 AT5G03040.2 27.981 411 231 14 1 351 1 406 5.74e-31 124
Msa0597790 AT4G10640.1 30.025 403 198 18 1 356 1 366 1.99e-24 105
Msa0597790 AT3G49260.1 33.714 175 95 6 103 257 122 295 1.29e-22 100
Msa0597790 AT3G49260.4 33.714 175 95 6 103 257 122 295 1.29e-22 100
Msa0597790 AT3G49260.2 33.714 175 95 6 103 257 122 295 1.29e-22 100
Msa0597790 AT1G01110.2 26.582 395 192 12 92 406 112 488 3.16e-22 99.4
Msa0597790 AT3G49260.3 32.571 175 98 5 103 257 122 296 3.66e-22 99.0
Msa0597790 AT2G26180.1 30.183 328 182 12 60 349 47 365 3.76e-20 92.4
Msa0597790 AT4G14750.1 31.401 207 116 6 2 194 14 208 2.57e-19 89.7
Msa0597790 AT4G14750.2 31.401 207 116 6 2 194 73 267 3.38e-19 89.7
Msa0597790 AT4G14750.3 31.401 207 116 6 2 194 73 267 4.22e-19 89.7
Msa0597790 AT3G09710.2 26.546 388 217 12 57 380 60 443 5.22e-19 89.4
Msa0597790 AT3G09710.1 26.720 378 215 13 57 380 60 429 1.02e-18 88.6
Msa0597790 AT4G00820.1 30.453 243 128 9 39 254 74 302 1.57e-18 88.2
Msa0597790 AT1G72670.1 34.706 170 90 5 100 254 92 255 3.18e-18 86.7
Msa0597790 AT1G17480.1 37.121 132 69 3 100 231 93 210 2.07e-17 84.0
Msa0597790 AT3G22190.3 33.511 188 107 5 103 279 90 270 2.38e-17 84.3
Msa0597790 AT3G22190.2 33.511 188 107 5 103 279 90 270 2.38e-17 84.3
Msa0597790 AT3G22190.4 33.511 188 107 5 103 279 90 270 2.38e-17 84.3
Msa0597790 AT3G22190.1 33.511 188 107 5 103 279 90 270 2.38e-17 84.3
Msa0597790 AT2G26410.2 28.421 190 124 4 94 273 141 328 4.06e-16 80.9
Msa0597790 AT2G26410.1 28.421 190 124 4 94 273 141 328 4.06e-16 80.9
Msa0597790 AT1G18840.1 41.228 114 57 4 56 164 64 172 1.69e-15 79.0
Msa0597790 AT1G18840.3 41.228 114 57 4 56 164 64 172 1.69e-15 79.0
Msa0597790 AT1G18840.2 41.228 114 57 4 56 164 64 172 1.69e-15 79.0
Msa0597790 AT2G33990.1 33.333 162 98 4 103 257 49 207 2.33e-15 76.3
Msa0597790 AT3G16490.1 53.226 62 29 0 103 164 109 170 2.50e-15 77.8
Msa0597790 AT1G74690.1 46.154 91 31 2 94 169 109 196 8.64e-15 77.0
Msa0597790 AT4G29150.1 47.887 71 37 0 89 159 119 189 1.50e-14 75.5
Msa0597790 AT1G51960.1 53.226 62 29 0 103 164 102 163 1.58e-14 75.1
Msa0597790 AT5G07240.1 52.542 59 28 0 103 161 108 166 2.30e-14 75.1
Msa0597790 AT5G07240.2 52.542 59 28 0 103 161 154 212 2.41e-14 75.1
Msa0597790 AT5G62070.1 57.407 54 23 0 102 155 118 171 3.72e-14 74.3
Msa0597790 AT3G49380.1 56.897 58 25 0 100 157 109 166 7.10e-14 73.2
Msa0597790 AT4G23060.1 48.529 68 35 0 97 164 163 230 7.60e-14 73.6
Msa0597790 AT3G15050.1 32.609 138 88 2 101 237 50 183 3.31e-12 67.0
Msa0597790 AT3G51380.1 49.231 65 33 0 100 164 36 100 4.57e-12 62.8
Msa0597790 AT1G14380.7 40.860 93 50 3 69 159 63 152 5.47e-11 65.1
Msa0597790 AT1G14380.6 40.860 93 50 3 69 159 63 152 5.70e-11 65.1
Msa0597790 AT1G14380.5 40.860 93 50 3 69 159 63 152 5.70e-11 65.1
Msa0597790 AT1G14380.2 40.860 93 50 3 69 159 63 152 5.70e-11 65.1
Msa0597790 AT1G14380.1 46.032 63 34 0 101 163 94 156 6.10e-11 65.1
Msa0597790 AT1G14380.3 46.032 63 34 0 101 163 94 156 6.10e-11 65.1
Msa0597790 AT1G14380.4 46.032 63 34 0 101 163 94 156 6.10e-11 65.1

Find 110 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCCACATTCTTGATTT+TGG 0.141296 4_2:-30870431 Msa0597790:five_prime_UTR
GTTCTAAAGACAAGATAATT+AGG 0.175455 4_2:-30868267 Msa0597790:CDS
TCCAAATGGTTGAAGGAAAA+TGG 0.192772 4_2:-30868318 Msa0597790:CDS
TCTAAAATCGGTGACGAATT+TGG 0.198095 4_2:-30867572 Msa0597790:CDS
TCAAAATTCAAACTGCCTTT+AGG 0.203753 4_2:-30869448 Msa0597790:CDS
TCCAATCCTTCAACTGGATT+TGG 0.229739 4_2:+30867509 None:intergenic
CAGATAGCTCACTGCCTAAT+TGG 0.230370 4_2:-30867130 Msa0597790:CDS
CAAAATTCAAACTGCCTTTA+GGG 0.238522 4_2:-30869447 Msa0597790:CDS
TTCAGTAGAATGTGTTTAGA+TGG 0.287264 4_2:-30866822 Msa0597790:three_prime_UTR
AAAAGAAGGAAATGGATATT+TGG 0.296004 4_2:-30869677 Msa0597790:CDS
AGGCACCGTTTGTAAGAAAT+TGG 0.300016 4_2:+30870318 None:intergenic
ATGTGGTTGAATGTTTATTT+TGG 0.300820 4_2:-30866979 Msa0597790:three_prime_UTR
TAATTCCAAGACCTTGCTTT+TGG 0.317035 4_2:+30867338 None:intergenic
CACTAAGCTTGCCTCTATTA+AGG 0.318000 4_2:+30867240 None:intergenic
TATTCTTTCTCTCTTAATAA+TGG 0.318278 4_2:+30868051 None:intergenic
GAACTTTGTCTATCCCAATT+AGG 0.328904 4_2:+30867116 None:intergenic
ACATATTATATAAACAGTTT+TGG 0.329521 4_2:+30867016 None:intergenic
TACTGATATGTTAAAATGTT+TGG 0.331383 4_2:-30867074 Msa0597790:three_prime_UTR
GAATTTCTGCTCTTTCAAAT+AGG 0.331619 4_2:-30870504 Msa0597790:five_prime_UTR
GAAATTCCTCTTTGCCTTCA+TGG 0.333542 4_2:+30870657 None:intergenic
ATCTTCAGAATCAGAATGTT+TGG 0.344137 4_2:+30869580 None:intergenic
GCCATGTATGCCGGAGTTGC+CGG 0.349143 4_2:+30867404 None:intergenic
AAAATCAAGCAGGACTATAA+AGG 0.350189 4_2:-30867168 Msa0597790:CDS
AGTTGATTTCTACATTGATT+AGG 0.355622 4_2:-30866921 Msa0597790:three_prime_UTR
TCCTTGCACAAATCTTTGAT+TGG 0.374460 4_2:+30868344 None:intergenic
TTCTAAAGACAAGATAATTA+GGG 0.386905 4_2:-30868266 Msa0597790:intron
TTACTATAAAGAATGTTTGC+TGG 0.393081 4_2:-30870399 Msa0597790:five_prime_UTR
GGTGATTCCAATCCTTCAAC+TGG 0.395148 4_2:+30867503 None:intergenic
AGAAGGAGAAAAGAAGGAAA+TGG 0.396134 4_2:-30869685 Msa0597790:CDS
AAGAATGTTTGCTGGTTTCA+AGG 0.398592 4_2:-30870391 Msa0597790:five_prime_UTR
GTATCATTAGCTTCATTTGA+AGG 0.398734 4_2:+30867094 None:intergenic
AAATTCCTCTTTGCCTTCAT+GGG 0.398795 4_2:+30870658 None:intergenic
CCGGAGAGCTTGAAAATGAT+TGG 0.404332 4_2:+30867423 None:intergenic
TACAGCTCACATTCTAAAAT+CGG 0.405037 4_2:-30867584 Msa0597790:CDS
TAAAACTAGGAGATCTTTGT+TGG 0.405800 4_2:+30867210 None:intergenic
AGATAGCTCACTGCCTAATT+GGG 0.412832 4_2:-30867129 Msa0597790:CDS
CCAAATGGTTGAAGGAAAAT+GGG 0.421909 4_2:-30868317 Msa0597790:CDS
AATCAAGAATGTGGAAACTT+TGG 0.423828 4_2:+30870435 None:intergenic
TCAGAAAGAAGTAAAGTGAA+TGG 0.437880 4_2:-30867686 Msa0597790:CDS
TCCAAATCCAGTTGAAGGAT+TGG 0.443208 4_2:-30867510 Msa0597790:CDS
TCAGTAGAATGTGTTTAGAT+GGG 0.448223 4_2:-30866821 Msa0597790:three_prime_UTR
GTTCACCAAAAGCAAGGTCT+TGG 0.448573 4_2:-30867343 Msa0597790:CDS
CTTAATAGAGGCAAGCTTAG+TGG 0.449370 4_2:-30867239 Msa0597790:CDS
GAATTTCTTGAAAATAGTAT+TGG 0.453636 4_2:+30867482 None:intergenic
CAAGAATGTGGAAACTTTGG+TGG 0.455525 4_2:+30870438 None:intergenic
CATTTAGAAATATGATCAAA+AGG 0.457028 4_2:+30869875 None:intergenic
CAAAATCCAAATCCAGTTGA+AGG 0.460055 4_2:-30867515 Msa0597790:CDS
AAATTTCTTTAATCTCCCTC+TGG 0.462797 4_2:+30869477 None:intergenic
CTATCTTTGTTATTTCATGA+TGG 0.464166 4_2:-30870790 Msa0597790:five_prime_UTR
GAGGTACTGGCTGGAGCAAT+GGG 0.470588 4_2:-30867657 Msa0597790:CDS
CACAGGAGGAAGTGTTCAAT+AGG 0.472141 4_2:-30867452 Msa0597790:CDS
TCCGGCAACTCCGGCATACA+TGG 0.476116 4_2:-30867405 Msa0597790:CDS
GAAGTAAAGTGAATGGAAGA+TGG 0.476780 4_2:-30867679 Msa0597790:CDS
GAAGGCCTTGAGGGCATTGA+AGG 0.479233 4_2:-30868458 Msa0597790:CDS
TCTTCAGAGTATTCATAGCT+TGG 0.482970 4_2:+30868389 None:intergenic
AACAGTGAAGTCCTTAATAG+AGG 0.490528 4_2:-30867251 Msa0597790:CDS
AGGCATGTTCATGTGTCTGT+TGG 0.490884 4_2:+30870725 None:intergenic
GGCATGTTCATGTGTCTGTT+GGG 0.491128 4_2:+30870726 None:intergenic
TGTTCATGGACAGGCAAAGA+AGG 0.491711 4_2:-30868476 Msa0597790:intron
AAACTTCAAGCTATCATTCG+TGG 0.499142 4_2:-30868427 Msa0597790:CDS
ATGCACCAATTTCTTACAAA+CGG 0.502211 4_2:-30870323 Msa0597790:five_prime_UTR
ACAGGCAAAGAAGGCCTTGA+GGG 0.502406 4_2:-30868467 Msa0597790:intron
GGAGGTACTGGCTGGAGCAA+TGG 0.509178 4_2:-30867658 Msa0597790:CDS
ACTCACAAGGTAACCCCTAA+AGG 0.511074 4_2:+30869433 None:intergenic
CTGCAGTCATTAACTTGAGA+TGG 0.516273 4_2:+30870360 None:intergenic
TTCAAGCTCTCCGGCAACTC+CGG 0.516297 4_2:-30867414 Msa0597790:CDS
GACAAGCACATTTAAATGAA+AGG 0.522982 4_2:-30870823 Msa0597790:five_prime_UTR
GGATGACAGTACTTTATTGA+AGG 0.531553 4_2:-30868110 Msa0597790:CDS
GAAGGAAATGGATATTTGGA+AGG 0.532923 4_2:-30869673 Msa0597790:CDS
AATTGGTGCATGGGAACAAA+GGG 0.536848 4_2:+30870335 None:intergenic
CAGTACTTTATTGAAGGAAG+AGG 0.539274 4_2:-30868104 Msa0597790:CDS
ACTCAAACAGTCAAAGAAAG+TGG 0.539967 4_2:-30868132 Msa0597790:CDS
AGGAGACTCCAAATGGTTGA+AGG 0.541413 4_2:-30868325 Msa0597790:CDS
TGAATGGAAGATGGAGGTAC+TGG 0.544699 4_2:-30867670 Msa0597790:CDS
AAATTGGTGCATGGGAACAA+AGG 0.546676 4_2:+30870334 None:intergenic
ATTTAGAAATATGATCAAAA+GGG 0.550004 4_2:+30869876 None:intergenic
ATAATTTCTTGTATCATGAG+AGG 0.552485 4_2:-30867048 Msa0597790:three_prime_UTR
TCAGTAGCAGCCATGTATGC+CGG 0.554373 4_2:+30867395 None:intergenic
TTGTGCAAGGAGACTCCAAA+TGG 0.554466 4_2:-30868332 Msa0597790:CDS
TGGAAGATGGAGGTACTGGC+TGG 0.555626 4_2:-30867666 Msa0597790:CDS
TTTGTAAGAAATTGGTGCAT+GGG 0.556094 4_2:+30870326 None:intergenic
CTCAACCTATCAAAATCCAG+AGG 0.560910 4_2:-30869493 Msa0597790:CDS
GTTATATCATAGTTTAGTGA+AGG 0.565875 4_2:-30870768 Msa0597790:five_prime_UTR
CTCACATTCCACACAAGAGA+AGG 0.567965 4_2:-30869799 Msa0597790:intron
AAAATTCAAACTGCCTTTAG+GGG 0.573375 4_2:-30869446 Msa0597790:CDS
GTTTGTAAGAAATTGGTGCA+TGG 0.575165 4_2:+30870325 None:intergenic
CAGTAGAATGTGTTTAGATG+GGG 0.575508 4_2:-30866820 Msa0597790:three_prime_UTR
AAAATCGGTGACGAATTTGG+AGG 0.576765 4_2:-30867569 Msa0597790:CDS
TATTCCCTTCAATGCCCTCA+AGG 0.584662 4_2:+30868453 None:intergenic
GTTGGTGGAGCTGTAATTGA+AGG 0.587261 4_2:+30869632 None:intergenic
ACTGAAATACCCTTAAAACT+AGG 0.588800 4_2:+30867197 None:intergenic
GCTCATGAAGATAAATGCAT+AGG 0.590914 4_2:+30870617 None:intergenic
CTCAAACAGTCAAAGAAAGT+GGG 0.591986 4_2:-30868131 Msa0597790:CDS
AAATTGAAAAGGACCCATGA+AGG 0.594324 4_2:-30870671 Msa0597790:five_prime_UTR
CAGTGCCTATAAAATCAAGC+AGG 0.595648 4_2:-30867178 Msa0597790:CDS
GCTGGTTTAATCTAGTGAAG+AGG 0.596678 4_2:-30869836 Msa0597790:CDS
AGACACCAAAATCAAGAATG+TGG 0.602705 4_2:+30870426 None:intergenic
AACAATATCAAAAGAAACAG+AGG 0.603713 4_2:-30869612 Msa0597790:CDS
GTAAAGTGAATGGAAGATGG+AGG 0.607160 4_2:-30867676 Msa0597790:CDS
TGTATGATGTATATTATATG+TGG 0.616660 4_2:-30866996 Msa0597790:three_prime_UTR
TCCAATCAAAGATTTGTGCA+AGG 0.626481 4_2:-30868345 Msa0597790:CDS
CAACAAGTTCACCAAAAGCA+AGG 0.636655 4_2:-30867349 Msa0597790:CDS
AAGGCCTTGAGGGCATTGAA+GGG 0.639367 4_2:-30868457 Msa0597790:CDS
AAGGACCCATGAAGGCAAAG+AGG 0.649590 4_2:-30870663 Msa0597790:five_prime_UTR
TCAACCTATCAAAATCCAGA+GGG 0.651212 4_2:-30869492 Msa0597790:CDS
GACAGGCAAAGAAGGCCTTG+AGG 0.658532 4_2:-30868468 Msa0597790:intron
AATATCAAAAGAAACAGAGG+AGG 0.669914 4_2:-30869609 Msa0597790:CDS
ATTGAACACTTCCTCCTGTG+AGG 0.674211 4_2:+30867455 None:intergenic
TACTGAAATTGAGAGTCACA+AGG 0.674965 4_2:+30866838 None:intergenic
TTGAGAATTGAACATTAGTG+TGG 0.682763 4_2:-30866956 Msa0597790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAAAAATTGAAA+AGG - chr4_2:30866968-30866987 Msa0597790:three_prime_UTR 10.0%
!!! ACTCATATTTTTATTAACTT+TGG + chr4_2:30867374-30867393 None:intergenic 15.0%
!! CTGATTTATGTATATTTATT+TGG - chr4_2:30867515-30867534 Msa0597790:CDS 15.0%
!! AAATAAATTATTCAATGCTT+AGG - chr4_2:30867605-30867624 Msa0597790:CDS 15.0%
!! ATTTAGAAATATGATCAAAA+GGG + chr4_2:30867777-30867796 None:intergenic 15.0%
!!! ATATGATTGTTATTAGAATA+AGG - chr4_2:30868504-30868523 Msa0597790:intron 15.0%
!! GGTGTTTAAATTAAAAATAT+AGG - chr4_2:30868525-30868544 Msa0597790:intron 15.0%
!!! AAAAAAAAAGTATCATAACT+AGG - chr4_2:30868686-30868705 Msa0597790:intron 15.0%
!!! ATAAATTTCTCATTTTTAGA+TGG - chr4_2:30869495-30869514 Msa0597790:CDS 15.0%
!! ATCAAAAATATATAAGAGTT+AGG + chr4_2:30869656-30869675 None:intergenic 15.0%
!!! ACATATTATATAAACAGTTT+TGG + chr4_2:30870637-30870656 None:intergenic 15.0%
!! CAAAAAATCTTGAATGATAT+AGG - chr4_2:30867124-30867143 Msa0597790:CDS 20.0%
!! ATAGTTGAAAAAAAAAGATG+AGG + chr4_2:30867442-30867461 None:intergenic 20.0%
!!! TCTTTTTTTTTCAACTATCT+TGG - chr4_2:30867444-30867463 Msa0597790:CDS 20.0%
!! CATTTAGAAATATGATCAAA+AGG + chr4_2:30867778-30867797 None:intergenic 20.0%
!!! CTTTTGATCATATTTCTAAA+TGG - chr4_2:30867776-30867795 Msa0597790:intron 20.0%
!!! AAAACCTTAATATTTTCAGA+AGG - chr4_2:30867948-30867967 Msa0597790:intron 20.0%
!! AAATGAACAAAGAAAAATCT+CGG - chr4_2:30868757-30868776 Msa0597790:intron 20.0%
!! TTAGTAAGTAAAAGAAACAA+TGG - chr4_2:30869116-30869135 Msa0597790:intron 20.0%
!! TATAACTAAAGCTTATAGTA+AGG + chr4_2:30869145-30869164 None:intergenic 20.0%
!!! TTCTAAAGACAAGATAATTA+GGG - chr4_2:30869384-30869403 Msa0597790:intron 20.0%
!! TATTCTTTCTCTCTTAATAA+TGG + chr4_2:30869602-30869621 None:intergenic 20.0%
!! TAATTATGTGTTTATAGCAT+TGG - chr4_2:30869718-30869737 Msa0597790:intron 20.0%
!! TTATGACAAAAGATAAAACA+AGG - chr4_2:30869776-30869795 Msa0597790:intron 20.0%
!! GAATTTCTTGAAAATAGTAT+TGG + chr4_2:30870171-30870190 None:intergenic 20.0%
!! TACTGATATGTTAAAATGTT+TGG - chr4_2:30870576-30870595 Msa0597790:five_prime_UTR 20.0%
!! TGTATGATGTATATTATATG+TGG - chr4_2:30870654-30870673 Msa0597790:five_prime_UTR 20.0%
!!! CTATCTTTGTTATTTCATGA+TGG - chr4_2:30866860-30866879 Msa0597790:three_prime_UTR 25.0%
! GTTATATCATAGTTTAGTGA+AGG - chr4_2:30866882-30866901 Msa0597790:three_prime_UTR 25.0%
!!! TTTGTTTTTCTAAATGTAGC+AGG + chr4_2:30866948-30866967 None:intergenic 25.0%
! TTACTATAAAGAATGTTTGC+TGG - chr4_2:30867251-30867270 Msa0597790:CDS 25.0%
! TTGGTTATAAAAAAGACAAG+AGG + chr4_2:30867355-30867374 None:intergenic 25.0%
! ATATGAGTAAGTGATTAACT+TGG - chr4_2:30867386-30867405 Msa0597790:CDS 25.0%
!! ACATCAGACTTTTCTAAATT+TGG + chr4_2:30867561-30867580 None:intergenic 25.0%
! AAGCATACTCATATAGAAAA+TGG + chr4_2:30867717-30867736 None:intergenic 25.0%
! TTTCTATATGAGTATGCTTA+TGG - chr4_2:30867718-30867737 Msa0597790:intron 25.0%
!! TTCTCCTTCTGAAAATATTA+AGG + chr4_2:30867955-30867974 None:intergenic 25.0%
! AAAAGAAGGAAATGGATATT+TGG - chr4_2:30867973-30867992 Msa0597790:intron 25.0%
!!! TCTGTTTCTTTTGATATTGT+TGG + chr4_2:30868039-30868058 None:intergenic 25.0%
! AACAATATCAAAAGAAACAG+AGG - chr4_2:30868038-30868057 Msa0597790:CDS 25.0%
! TTATTGCTATGATTTAGTGA+GGG + chr4_2:30868554-30868573 None:intergenic 25.0%
! TTTATTGCTATGATTTAGTG+AGG + chr4_2:30868555-30868574 None:intergenic 25.0%
! AATGAACAAAGAAAAATCTC+GGG - chr4_2:30868758-30868777 Msa0597790:intron 25.0%
! TAGTATATTTAGAGAACATG+TGG - chr4_2:30868809-30868828 Msa0597790:intron 25.0%
! GTAAAGGAAATCTAGTAAAT+TGG + chr4_2:30868958-30868977 None:intergenic 25.0%
! ATTGAAAGAGAAAGTTGTAA+AGG - chr4_2:30869090-30869109 Msa0597790:intron 25.0%
!! TTATAGCATTTTCTTGTTCA+TGG - chr4_2:30869160-30869179 Msa0597790:intron 25.0%
!!! GTTCTAAAGACAAGATAATT+AGG - chr4_2:30869383-30869402 Msa0597790:intron 25.0%
!!! TTCGTTGTTTTGTACAATTA+CGG - chr4_2:30869675-30869694 Msa0597790:CDS 25.0%
!!! ATTGATAACTTTTTCTTGCA+AGG + chr4_2:30870366-30870385 None:intergenic 25.0%
! ATAATTTCTTGTATCATGAG+AGG - chr4_2:30870602-30870621 Msa0597790:five_prime_UTR 25.0%
!! ATGTGGTTGAATGTTTATTT+TGG - chr4_2:30870671-30870690 Msa0597790:five_prime_UTR 25.0%
!! AGTTGATTTCTACATTGATT+AGG - chr4_2:30870729-30870748 Msa0597790:five_prime_UTR 25.0%
! TCTGAAAAATGAGTTTAACA+GGG + chr4_2:30870779-30870798 None:intergenic 25.0%
!! TTCTGAAAAATGAGTTTAAC+AGG + chr4_2:30870780-30870799 None:intergenic 25.0%
GACAAGCACATTTAAATGAA+AGG - chr4_2:30866827-30866846 Msa0597790:three_prime_UTR 30.0%
GAATTTCTGCTCTTTCAAAT+AGG - chr4_2:30867146-30867165 Msa0597790:CDS 30.0%
AATCAAGAATGTGGAAACTT+TGG + chr4_2:30867218-30867237 None:intergenic 30.0%
! AGTTTCCACATTCTTGATTT+TGG - chr4_2:30867219-30867238 Msa0597790:CDS 30.0%
TTTGTAAGAAATTGGTGCAT+GGG + chr4_2:30867327-30867346 None:intergenic 30.0%
ATGCACCAATTTCTTACAAA+CGG - chr4_2:30867327-30867346 Msa0597790:CDS 30.0%
TGATGAGTAAATGTGTGAAA+CGG + chr4_2:30867633-30867652 None:intergenic 30.0%
AAAAAATACCTTCTCTTGTG+TGG + chr4_2:30867862-30867881 None:intergenic 30.0%
! ATTTTCAGAAGGAGAAAAGA+AGG - chr4_2:30867959-30867978 Msa0597790:intron 30.0%
! GTTTCTTTTGATATTGTTGG+TGG + chr4_2:30868036-30868055 None:intergenic 30.0%
AATATCAAAAGAAACAGAGG+AGG - chr4_2:30868041-30868060 Msa0597790:CDS 30.0%
ATCTTCAGAATCAGAATGTT+TGG + chr4_2:30868073-30868092 None:intergenic 30.0%
AAATTTCTTTAATCTCCCTC+TGG + chr4_2:30868176-30868195 None:intergenic 30.0%
! AAAGGCAGTTTGAATTTTGA+TGG + chr4_2:30868202-30868221 None:intergenic 30.0%
TCAAAATTCAAACTGCCTTT+AGG - chr4_2:30868202-30868221 Msa0597790:intron 30.0%
CAAAATTCAAACTGCCTTTA+GGG - chr4_2:30868203-30868222 Msa0597790:intron 30.0%
AAAATTCAAACTGCCTTTAG+GGG - chr4_2:30868204-30868223 Msa0597790:intron 30.0%
TGTTATAAACCCACTTAGAT+TGG - chr4_2:30868325-30868344 Msa0597790:CDS 30.0%
TATTGCTATGATTTAGTGAG+GGG + chr4_2:30868553-30868572 None:intergenic 30.0%
ATAGGATCAGAATCAATTTG+AGG + chr4_2:30868993-30869012 None:intergenic 30.0%
AACTAAAGCTTATAGTAAGG+TGG + chr4_2:30869142-30869161 None:intergenic 30.0%
TCAGAAAGAAGTAAAGTGAA+TGG - chr4_2:30869964-30869983 Msa0597790:intron 30.0%
!! TACAGCTCACATTCTAAAAT+CGG - chr4_2:30870066-30870085 Msa0597790:intron 30.0%
TAAAACTAGGAGATCTTTGT+TGG + chr4_2:30870443-30870462 None:intergenic 30.0%
!!! ACAAAGATCTCCTAGTTTTA+AGG - chr4_2:30870443-30870462 Msa0597790:five_prime_UTR 30.0%
!!! CAAAGATCTCCTAGTTTTAA+GGG - chr4_2:30870444-30870463 Msa0597790:five_prime_UTR 30.0%
ACTGAAATACCCTTAAAACT+AGG + chr4_2:30870456-30870475 None:intergenic 30.0%
! ATAGTCCTGCTTGATTTTAT+AGG + chr4_2:30870480-30870499 None:intergenic 30.0%
AAAATCAAGCAGGACTATAA+AGG - chr4_2:30870482-30870501 Msa0597790:five_prime_UTR 30.0%
! GTATCATTAGCTTCATTTGA+AGG + chr4_2:30870559-30870578 None:intergenic 30.0%
TTGAGAATTGAACATTAGTG+TGG - chr4_2:30870694-30870713 Msa0597790:five_prime_UTR 30.0%
TTCAGTAGAATGTGTTTAGA+TGG - chr4_2:30870828-30870847 Msa0597790:five_prime_UTR 30.0%
TCAGTAGAATGTGTTTAGAT+GGG - chr4_2:30870829-30870848 Msa0597790:five_prime_UTR 30.0%
AAATTGAAAAGGACCCATGA+AGG - chr4_2:30866979-30866998 Msa0597790:three_prime_UTR 35.0%
AAATTCCTCTTTGCCTTCAT+GGG + chr4_2:30866995-30867014 None:intergenic 35.0%
GCTCATGAAGATAAATGCAT+AGG + chr4_2:30867036-30867055 None:intergenic 35.0%
AGACACCAAAATCAAGAATG+TGG + chr4_2:30867227-30867246 None:intergenic 35.0%
!! AAGAATGTTTGCTGGTTTCA+AGG - chr4_2:30867259-30867278 Msa0597790:CDS 35.0%
GTTTGTAAGAAATTGGTGCA+TGG + chr4_2:30867328-30867347 None:intergenic 35.0%
! AAACCAGCTCTTCTTTTTCT+TGG + chr4_2:30867802-30867821 None:intergenic 35.0%
! TAGTGAAGAGGCTTTTTGTA+TGG - chr4_2:30867826-30867845 Msa0597790:intron 35.0%
! AGTGAAGAGGCTTTTTGTAT+GGG - chr4_2:30867827-30867846 Msa0597790:intron 35.0%
AGAAGGAGAAAAGAAGGAAA+TGG - chr4_2:30867965-30867984 Msa0597790:intron 35.0%
GAAGGAAATGGATATTTGGA+AGG - chr4_2:30867977-30867996 Msa0597790:intron 35.0%
TCAACCTATCAAAATCCAGA+GGG - chr4_2:30868158-30868177 Msa0597790:intron 35.0%
TTTAGGCTATAGAAAACAGC+TGG + chr4_2:30868248-30868267 None:intergenic 35.0%
TCGAACATGAAACCTTAAAG+AGG + chr4_2:30868386-30868405 None:intergenic 35.0%
AACAAAGAAAAATCTCGGGA+AGG - chr4_2:30868762-30868781 Msa0597790:intron 35.0%
!! CAGAAGCTTGTTAAAAAGTC+AGG - chr4_2:30868926-30868945 Msa0597790:intron 35.0%
! CAATTTGAGGTACTACTAGA+TGG + chr4_2:30868980-30868999 None:intergenic 35.0%
TGATTCTGATCCTATTGTGT+TGG - chr4_2:30868998-30869017 Msa0597790:intron 35.0%
AGTACCTCAAATTCAACTCT+AGG - chr4_2:30869044-30869063 Msa0597790:intron 35.0%
GTACCTCAAATTCAACTCTA+GGG - chr4_2:30869045-30869064 Msa0597790:intron 35.0%
AAACTTCAAGCTATCATTCG+TGG - chr4_2:30869223-30869242 Msa0597790:intron 35.0%
! TCTTCAGAGTATTCATAGCT+TGG + chr4_2:30869264-30869283 None:intergenic 35.0%
TCCAATCAAAGATTTGTGCA+AGG - chr4_2:30869305-30869324 Msa0597790:intron 35.0%
TCCTTGCACAAATCTTTGAT+TGG + chr4_2:30869309-30869328 None:intergenic 35.0%
TCCAAATGGTTGAAGGAAAA+TGG - chr4_2:30869332-30869351 Msa0597790:intron 35.0%
CCAAATGGTTGAAGGAAAAT+GGG - chr4_2:30869333-30869352 Msa0597790:intron 35.0%
ACTCAAACAGTCAAAGAAAG+TGG - chr4_2:30869518-30869537 Msa0597790:CDS 35.0%
CTCAAACAGTCAAAGAAAGT+GGG - chr4_2:30869519-30869538 Msa0597790:CDS 35.0%
GGATGACAGTACTTTATTGA+AGG - chr4_2:30869540-30869559 Msa0597790:CDS 35.0%
CAGTACTTTATTGAAGGAAG+AGG - chr4_2:30869546-30869565 Msa0597790:CDS 35.0%
!!! ACTTTTTCGATTTAAGCTGC+CGG - chr4_2:30869803-30869822 Msa0597790:CDS 35.0%
GGATAGCTTATGAAAACAAC+CGG + chr4_2:30869825-30869844 None:intergenic 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG - chr4_2:30869825-30869844 Msa0597790:CDS 35.0%
AAGCATTTGAGAGACTGTTT+CGG + chr4_2:30869867-30869886 None:intergenic 35.0%
TAAGTTAGTTCGAGAACACT+TGG + chr4_2:30869918-30869937 None:intergenic 35.0%
AACTTATACAAACCCTACAG+AGG - chr4_2:30869932-30869951 Msa0597790:intron 35.0%
GAAGTAAAGTGAATGGAAGA+TGG - chr4_2:30869971-30869990 Msa0597790:intron 35.0%
! TCTAAAATCGGTGACGAATT+TGG - chr4_2:30870078-30870097 Msa0597790:intron 35.0%
CAAAATCCAAATCCAGTTGA+AGG - chr4_2:30870135-30870154 Msa0597790:intron 35.0%
! CAAGAAATTCTTTTCCTCAC+AGG - chr4_2:30870181-30870200 Msa0597790:intron 35.0%
! TAATTCCAAGACCTTGCTTT+TGG + chr4_2:30870315-30870334 None:intergenic 35.0%
AACAGTGAAGTCCTTAATAG+AGG - chr4_2:30870399-30870418 Msa0597790:five_prime_UTR 35.0%
GAACTTTGTCTATCCCAATT+AGG + chr4_2:30870537-30870556 None:intergenic 35.0%
TACTGAAATTGAGAGTCACA+AGG + chr4_2:30870815-30870834 None:intergenic 35.0%
GAAATTCCTCTTTGCCTTCA+TGG + chr4_2:30866996-30867015 None:intergenic 40.0%
CAAGAATGTGGAAACTTTGG+TGG + chr4_2:30867215-30867234 None:intergenic 40.0%
! CTGCAGTCATTAACTTGAGA+TGG + chr4_2:30867293-30867312 None:intergenic 40.0%
AATTGGTGCATGGGAACAAA+GGG + chr4_2:30867318-30867337 None:intergenic 40.0%
AAATTGGTGCATGGGAACAA+AGG + chr4_2:30867319-30867338 None:intergenic 40.0%
! AGGCACCGTTTGTAAGAAAT+TGG + chr4_2:30867335-30867354 None:intergenic 40.0%
! GCTGGTTTAATCTAGTGAAG+AGG - chr4_2:30867814-30867833 Msa0597790:intron 40.0%
CTCAACCTATCAAAATCCAG+AGG - chr4_2:30868157-30868176 Msa0597790:intron 40.0%
!! ATCTCCCTCTGGATTTTGAT+AGG + chr4_2:30868165-30868184 None:intergenic 40.0%
CTATAGCCTAAATCCTCCTT+TGG - chr4_2:30868256-30868275 Msa0597790:intron 40.0%
ATCATGCCAAAGGAGGATTT+AGG + chr4_2:30868265-30868284 None:intergenic 40.0%
ACTAAAGATCATGCCAAAGG+AGG + chr4_2:30868272-30868291 None:intergenic 40.0%
AGCACTAAAGATCATGCCAA+AGG + chr4_2:30868275-30868294 None:intergenic 40.0%
! TAAACCCACTTAGATTGGCT+TGG - chr4_2:30868330-30868349 Msa0597790:CDS 40.0%
!! TTAGATTGGCTTGGTGGTAT+TGG - chr4_2:30868339-30868358 Msa0597790:CDS 40.0%
TACTTATTCTCTCTCGCAGT+AGG + chr4_2:30868629-30868648 None:intergenic 40.0%
AGTCTGATAGTTATGGACGA+AGG - chr4_2:30868785-30868804 Msa0597790:intron 40.0%
TAGAGAACATGTGGCTGATA+CGG - chr4_2:30868818-30868837 Msa0597790:intron 40.0%
ATACGGCCTCAATTGTATTG+AGG - chr4_2:30868835-30868854 Msa0597790:intron 40.0%
CTACGTCCTCAATACAATTG+AGG + chr4_2:30868844-30868863 None:intergenic 40.0%
CAAGCTTCTGCTTCGAAAAA+AGG + chr4_2:30868916-30868935 None:intergenic 40.0%
! GAGGTACTACTAGATGGTAA+AGG + chr4_2:30868974-30868993 None:intergenic 40.0%
!! GATCCTATTGTGTTGGTCTT+CGG - chr4_2:30869005-30869024 Msa0597790:intron 40.0%
TTTCCGAAGACCAACACAAT+AGG + chr4_2:30869011-30869030 None:intergenic 40.0%
CTTCCCTAGAGTTGAATTTG+AGG + chr4_2:30869051-30869070 None:intergenic 40.0%
! CTCAAATTCAACTCTAGGGA+AGG - chr4_2:30869049-30869068 Msa0597790:intron 40.0%
! GCATTTTCTTGTTCATGGAC+AGG - chr4_2:30869165-30869184 Msa0597790:intron 40.0%
! CCCATTTTCCTTCAACCATT+TGG + chr4_2:30869336-30869355 None:intergenic 40.0%
ATTAAGCTGTTTACCCAAGC+AGG + chr4_2:30869702-30869721 None:intergenic 40.0%
CTGTTTCGGGGAAAATACTT+CGG + chr4_2:30869853-30869872 None:intergenic 40.0%
AGCATTTGAGAGACTGTTTC+GGG + chr4_2:30869866-30869885 None:intergenic 40.0%
GTAAAGTGAATGGAAGATGG+AGG - chr4_2:30869974-30869993 Msa0597790:intron 40.0%
AAAATCGGTGACGAATTTGG+AGG - chr4_2:30870081-30870100 Msa0597790:intron 40.0%
TCCAAATCCAGTTGAAGGAT+TGG - chr4_2:30870140-30870159 Msa0597790:intron 40.0%
TCCAATCCTTCAACTGGATT+TGG + chr4_2:30870144-30870163 None:intergenic 40.0%
! GAAATTCTTTTCCTCACAGG+AGG - chr4_2:30870184-30870203 Msa0597790:intron 40.0%
!! CCAATCATTTTCAAGCTCTC+CGG - chr4_2:30870227-30870246 Msa0597790:intron 40.0%
CAACAAGTTCACCAAAAGCA+AGG - chr4_2:30870301-30870320 Msa0597790:five_prime_UTR 40.0%
CACTAAGCTTGCCTCTATTA+AGG + chr4_2:30870413-30870432 None:intergenic 40.0%
CTTAATAGAGGCAAGCTTAG+TGG - chr4_2:30870411-30870430 Msa0597790:five_prime_UTR 40.0%
CAGTGCCTATAAAATCAAGC+AGG - chr4_2:30870472-30870491 Msa0597790:five_prime_UTR 40.0%
AGATAGCTCACTGCCTAATT+GGG - chr4_2:30870521-30870540 Msa0597790:five_prime_UTR 40.0%
GGCATGTTCATGTGTCTGTT+GGG + chr4_2:30866927-30866946 None:intergenic 45.0%
AGGCATGTTCATGTGTCTGT+TGG + chr4_2:30866928-30866947 None:intergenic 45.0%
TGGCCAAGAAAAAGAAGAGC+TGG - chr4_2:30867796-30867815 Msa0597790:intron 45.0%
CTCACATTCCACACAAGAGA+AGG - chr4_2:30867851-30867870 Msa0597790:intron 45.0%
! GTTGGTGGAGCTGTAATTGA+AGG + chr4_2:30868021-30868040 None:intergenic 45.0%
ACTCACAAGGTAACCCCTAA+AGG + chr4_2:30868220-30868239 None:intergenic 45.0%
ACAGCTGGAAGAAACTCACA+AGG + chr4_2:30868233-30868252 None:intergenic 45.0%
ACCACCAAGCCAATCTAAGT+GGG + chr4_2:30868337-30868356 None:intergenic 45.0%
TACCACCAAGCCAATCTAAG+TGG + chr4_2:30868338-30868357 None:intergenic 45.0%
GTTTCATGTTCGATTCCCTC+CGG - chr4_2:30868393-30868412 Msa0597790:CDS 45.0%
! ATTCCCTCCGGTGTCAATTT+GGG - chr4_2:30868405-30868424 Msa0597790:CDS 45.0%
TAACCCACCCAAATTGACAC+CGG + chr4_2:30868415-30868434 None:intergenic 45.0%
GGGAAGGAGTCTGATAGTTA+TGG - chr4_2:30868778-30868797 Msa0597790:intron 45.0%
TTTAGGCGACGGCATCAAAA+AGG + chr4_2:30868879-30868898 None:intergenic 45.0%
AGGTTCTGCCACCAAGATTT+AGG + chr4_2:30868896-30868915 None:intergenic 45.0%
TGTTCATGGACAGGCAAAGA+AGG - chr4_2:30869174-30869193 Msa0597790:intron 45.0%
TATTCCCTTCAATGCCCTCA+AGG + chr4_2:30869200-30869219 None:intergenic 45.0%
TTGTGCAAGGAGACTCCAAA+TGG - chr4_2:30869318-30869337 Msa0597790:intron 45.0%
AGGAGACTCCAAATGGTTGA+AGG - chr4_2:30869325-30869344 Msa0597790:intron 45.0%
TGTACAATTACGGTCCTGCT+TGG - chr4_2:30869685-30869704 Msa0597790:CDS 45.0%
GTACAATTACGGTCCTGCTT+GGG - chr4_2:30869686-30869705 Msa0597790:CDS 45.0%
GCATTTGAGAGACTGTTTCG+GGG + chr4_2:30869865-30869884 None:intergenic 45.0%
! TGAATGGAAGATGGAGGTAC+TGG - chr4_2:30869980-30869999 Msa0597790:intron 45.0%
GGTGATTCCAATCCTTCAAC+TGG + chr4_2:30870150-30870169 None:intergenic 45.0%
ATTGAACACTTCCTCCTGTG+AGG + chr4_2:30870198-30870217 None:intergenic 45.0%
!! CACAGGAGGAAGTGTTCAAT+AGG - chr4_2:30870198-30870217 Msa0597790:intron 45.0%
CCGGAGAGCTTGAAAATGAT+TGG + chr4_2:30870230-30870249 None:intergenic 45.0%
GTTCACCAAAAGCAAGGTCT+TGG - chr4_2:30870307-30870326 Msa0597790:five_prime_UTR 45.0%
CAGATAGCTCACTGCCTAAT+TGG - chr4_2:30870520-30870539 Msa0597790:five_prime_UTR 45.0%
AAGGACCCATGAAGGCAAAG+AGG - chr4_2:30866987-30867006 Msa0597790:three_prime_UTR 50.0%
!! ACCCACTTAGATTGGCTTGG+TGG - chr4_2:30868333-30868352 Msa0597790:CDS 50.0%
!! GTGGTATTGGCTTGAGACCT+GGG - chr4_2:30868352-30868371 Msa0597790:CDS 50.0%
! TTAAAGAGGAGCACACTCCC+AGG + chr4_2:30868372-30868391 None:intergenic 50.0%
! TGGGAGTGTGCTCCTCTTTA+AGG - chr4_2:30868371-30868390 Msa0597790:CDS 50.0%
! GATTCCCTCCGGTGTCAATT+TGG - chr4_2:30868404-30868423 Msa0597790:CDS 50.0%
TGATGCCGTCGCCTAAATCT+TGG - chr4_2:30868882-30868901 Msa0597790:intron 50.0%
TGCCACCAAGATTTAGGCGA+CGG + chr4_2:30868890-30868909 None:intergenic 50.0%
ACAGGCAAAGAAGGCCTTGA+GGG - chr4_2:30869183-30869202 Msa0597790:intron 50.0%
!! AAGGCCTTGAGGGCATTGAA+GGG - chr4_2:30869193-30869212 Msa0597790:intron 50.0%
TGACTCTGCTGACCTCTGTA+GGG + chr4_2:30869947-30869966 None:intergenic 50.0%
TCAGTAGCAGCCATGTATGC+CGG + chr4_2:30870258-30870277 None:intergenic 50.0%
!! GGTGGTATTGGCTTGAGACC+TGG - chr4_2:30868351-30868370 Msa0597790:CDS 55.0%
CCACCCAAATTGACACCGGA+GGG + chr4_2:30868411-30868430 None:intergenic 55.0%
! CCTCCGGTGTCAATTTGGGT+GGG - chr4_2:30868409-30868428 Msa0597790:CDS 55.0%
TGCCGTCGCCTAAATCTTGG+TGG - chr4_2:30868885-30868904 Msa0597790:intron 55.0%
GACAGGCAAAGAAGGCCTTG+AGG - chr4_2:30869182-30869201 Msa0597790:intron 55.0%
!! GAAGGCCTTGAGGGCATTGA+AGG - chr4_2:30869192-30869211 Msa0597790:intron 55.0%
!! GGGGAAAATACTTCGGTGCC+AGG + chr4_2:30869846-30869865 None:intergenic 55.0%
CTGACTCTGCTGACCTCTGT+AGG + chr4_2:30869948-30869967 None:intergenic 55.0%
!! TGGAAGATGGAGGTACTGGC+TGG - chr4_2:30869984-30870003 Msa0597790:intron 55.0%
!! GAGGTACTGGCTGGAGCAAT+GGG - chr4_2:30869993-30870012 Msa0597790:intron 55.0%
TTCAAGCTCTCCGGCAACTC+CGG - chr4_2:30870236-30870255 Msa0597790:intron 55.0%
! CCCTCCGGTGTCAATTTGGG+TGG - chr4_2:30868408-30868427 Msa0597790:CDS 60.0%
CCCACCCAAATTGACACCGG+AGG + chr4_2:30868412-30868431 None:intergenic 60.0%
!! GGAGGTACTGGCTGGAGCAA+TGG - chr4_2:30869992-30870011 Msa0597790:intron 60.0%
TCCGGCAACTCCGGCATACA+TGG - chr4_2:30870245-30870264 Msa0597790:intron 60.0%
GCCATGTATGCCGGAGTTGC+CGG + chr4_2:30870249-30870268 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 30866820 30870852 30866820 ID=Msa0597790;Name=Msa0597790
chr4_2 mRNA 30866820 30870852 30866820 ID=Msa0597790-mRNA-1;Parent=Msa0597790;Name=Msa0597790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=613|1|1|1|0.8|0.66|6|286|436
chr4_2 exon 30866820 30867720 30866820 ID=Msa0597790-mRNA-1:exon:7746;Parent=Msa0597790-mRNA-1
chr4_2 exon 30868027 30868158 30868027 ID=Msa0597790-mRNA-1:exon:7745;Parent=Msa0597790-mRNA-1
chr4_2 exon 30868267 30868485 30868267 ID=Msa0597790-mRNA-1:exon:7744;Parent=Msa0597790-mRNA-1
chr4_2 exon 30869439 30869705 30869439 ID=Msa0597790-mRNA-1:exon:7743;Parent=Msa0597790-mRNA-1
chr4_2 exon 30869800 30869918 30869800 ID=Msa0597790-mRNA-1:exon:7742;Parent=Msa0597790-mRNA-1
chr4_2 exon 30870281 30870852 30870281 ID=Msa0597790-mRNA-1:exon:7741;Parent=Msa0597790-mRNA-1
chr4_2 five_prime_UTR 30870281 30870852 30870281 ID=Msa0597790-mRNA-1:five_prime_utr;Parent=Msa0597790-mRNA-1
chr4_2 five_prime_UTR 30869878 30869918 30869878 ID=Msa0597790-mRNA-1:five_prime_utr;Parent=Msa0597790-mRNA-1
chr4_2 CDS 30869800 30869877 30869800 ID=Msa0597790-mRNA-1:cds;Parent=Msa0597790-mRNA-1
chr4_2 CDS 30869439 30869705 30869439 ID=Msa0597790-mRNA-1:cds;Parent=Msa0597790-mRNA-1
chr4_2 CDS 30868267 30868485 30868267 ID=Msa0597790-mRNA-1:cds;Parent=Msa0597790-mRNA-1
chr4_2 CDS 30868027 30868158 30868027 ID=Msa0597790-mRNA-1:cds;Parent=Msa0597790-mRNA-1
chr4_2 CDS 30867106 30867720 30867106 ID=Msa0597790-mRNA-1:cds;Parent=Msa0597790-mRNA-1
chr4_2 three_prime_UTR 30866820 30867105 30866820 ID=Msa0597790-mRNA-1:three_prime_utr;Parent=Msa0597790-mRNA-1
Gene Sequence

>Msa0597790

ATGGCCAAGAAAAAGAAGAGCTGGTTTAATCTAGTGAAGAGGCTTTTTGTATGGGACTCACATTCCACACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGTTAAAGACAAAAAAGTTACCTTCAATTACAGCTCCACCAACAATATCAAAAGAAACAGAGGAGGAAAAAACCAAACATTCTGATTCTGAAGATGCTGTTAGTGCTACTGAAGTTGTTTCAGAATCTAGTTATCAAAATCAAGATAACTATGAAGAATCTCAACCTATCAAAATCCAGAGGGAGATTAAAGAAATTTCTGCCATCAAAATTCAAACTGCCTTTAGGGGTTACCTTGCAAAGAAGGCCTTGAGGGCATTGAAGGGAATAGTGAAACTTCAAGCTATCATTCGTGGAAGAGCAGTGAGACGCCAAGCTATGAATACTCTGAAGAGCTTGCAGTCAATTGTAAGTATCCAATCAAAGATTTGTGCAAGGAGACTCCAAATGGTTGAAGGAAAATGGGATTATTTTGAAGATGAAGAGATGCATTGTTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTCAAAGAAAGTGGGATGACAGTACTTTATTGAAGGAAGAGGTAGATGCTTCTTGCATGATCAAGAAAGAAGCCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAATGGAAGATGGAGGTACTGGCTGGAGCAATGGGTAGATACACAACTTTCTAAAAGCAAAGAACTTGAAGATTTAGACTCAGTTTACAGCTCACATTCTAAAATCGGTGACGAATTTGGAGGAAGACAACTTAAGCTGAGAAATACTACTAGACAAAATCCAAATCCAGTTGAAGGATTGGAATCACCAATACTATTTTCAAGAAATTCTTTTCCTCACAGGAGGAAGTGTTCAATAGGAGAAGACCAATCATTTTCAAGCTCTCCGGCAACTCCGGCATACATGGCTGCTACTGAATCAGCAAAAGCAAAAGCAAGATCAACAAGTTCACCAAAAGCAAGGTCTTGGAATTATGACATGAACTCTGATAGCTATTTATCACCTTGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGAAGTCCTTAATAGAGGCAAGCTTAGTGGTTGTAACCAACAAAGATCTCCTAGTTTTAAGGGTATTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGTATTAATTCAGATAGCTCACTGCCTAATTGGGATAGACAAAGTTCCTTCAAATGA
Protein sequence

>Msa0597790

MAKKKKSWFNLVKRLFVWDSHSTQEKKEKRRKWIFGRLKTKKLPSITAPPTISKETEEEKTKHSDSEDAVSATEVVSESSYQNQDNYEESQPIKIQREIKEISAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMNTLKSLQSIVSIQSKICARRLQMVEGKWDYFEDEEMHCSKDKIIRMDSNSQRKWDDSTLLKEEVDASCMIKKEAIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVYSSHSKIGDEFGGRQLKLRNTTRQNPNPVEGLESPILFSRNSFPHRRKCSIGEDQSFSSSPATPAYMAATESAKAKARSTSSPKARSWNYDMNSDSYLSPCKKKLSIVSSVNSEVLNRGKLSGCNQQRSPSFKGISVPIKSSRTIKDLSINSDSSLPNWDRQSSFK*