AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522710 MtrunA17_Chr3g0141401 99.048 315 3 0 1 315 1 315 0.0 638
Msa0522710 MtrunA17_Chr1g0154651 47.284 313 99 7 1 313 1 247 1.85e-81 247
Msa0522710 MtrunA17_Chr5g0403631 54.908 326 123 8 8 313 2 323 1.00e-74 232
Msa0522710 MtrunA17_Chr2g0315211 43.155 336 139 15 12 312 3 321 1.24e-33 125
Msa0522710 MtrunA17_Chr2g0315201 41.246 337 137 10 12 312 3 314 5.77e-32 121
Msa0522710 MtrunA17_Chr5g0408851 57.143 56 24 0 26 81 61 116 2.80e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522710 AT1G75080.2 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0522710 AT1G75080.1 65.094 318 88 10 14 313 22 334 3.83e-110 323
Msa0522710 AT1G19350.3 64.375 320 91 9 14 315 43 357 3.55e-109 322
Msa0522710 AT1G19350.5 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0522710 AT1G19350.1 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0522710 AT1G19350.6 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0522710 AT1G19350.4 64.375 320 91 9 14 315 21 335 3.99e-109 321
Msa0522710 AT3G50750.1 53.376 311 100 8 2 310 3 270 9.76e-71 221
Msa0522710 AT4G36780.1 58.794 199 75 3 15 209 16 211 1.82e-44 153
Msa0522710 AT1G78700.1 39.773 352 126 13 12 310 3 321 3.69e-37 135
Msa0522710 AT4G18890.1 41.720 314 136 13 12 312 3 282 2.25e-29 114
Msa0522710 AT2G45880.1 45.455 88 48 0 1 88 55 142 9.02e-15 75.5
Msa0522710 AT5G45300.2 57.143 56 24 0 26 81 97 152 1.62e-13 71.6
Msa0522710 AT5G45300.3 57.143 56 24 0 26 81 111 166 1.66e-13 71.6
Msa0522710 AT5G45300.1 57.143 56 24 0 26 81 97 152 1.66e-13 71.6

Find 130 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGGTCAAGCCTTGGGTT+GGG 0.244939 3_4:+76028323 Msa0522710:CDS
TAATAATCCTTTAAAATCTA+TGG 0.260043 3_4:+76028618 Msa0522710:three_prime_UTR
TTATGCTGCTCATTAATTAC+AGG 0.267539 3_4:-76028244 None:intergenic
CAAAGATTTACGCGGGATTA+AGG 0.278250 3_4:+76026838 Msa0522710:CDS
TGAAGTGGGCTTGGATGATT+TGG 0.316017 3_4:+76028357 Msa0522710:CDS
AGGATTTCAGAGCCAGAGTT+TGG 0.317045 3_4:+76028298 Msa0522710:CDS
CCATGTTGGAATCATGGGTT+TGG 0.326849 3_4:-76028005 None:intergenic
CATGTTGGAATCATGGGTTT+GGG 0.346172 3_4:-76028004 None:intergenic
ACAAGAACAACAGTAGTATA+AGG 0.369884 3_4:+76026560 Msa0522710:five_prime_UTR
AAGAGAATAAATGAGAGTTC+TGG 0.370557 3_4:-76028480 None:intergenic
TCATTGTTATCACAGTGTTT+TGG 0.378019 3_4:-76026882 None:intergenic
GAATCAATTGCCAAAGCATC+AGG 0.379878 3_4:+76028028 Msa0522710:CDS
AGTTAATGAAGACTAGTATA+TGG 0.383852 3_4:+76028409 Msa0522710:exon
GTGCAGGTCAAGCCTTGGGT+TGG 0.384192 3_4:+76028322 Msa0522710:CDS
GGATTTCAGAGCCAGAGTTT+GGG 0.385062 3_4:+76028299 Msa0522710:CDS
TTGGAGCTTACTCTTGGAAA+TGG 0.386518 3_4:+76028376 Msa0522710:CDS
TGGGGTGCAGGTCAAGCCTT+GGG 0.386786 3_4:+76028318 Msa0522710:CDS
TGATTCCCATGTTGGAATCA+TGG 0.387349 3_4:-76028011 None:intergenic
TTGGGGTGCAGGTCAAGCCT+TGG 0.395856 3_4:+76028317 Msa0522710:CDS
AGAGCCAGAGTTTGGGGTGC+AGG 0.400385 3_4:+76028306 Msa0522710:CDS
GAATAGTAGGTGGTGTATAA+AGG 0.410535 3_4:-76028111 None:intergenic
GATGATTTGGAGCTTACTCT+TGG 0.411343 3_4:+76028370 Msa0522710:CDS
GGCGCAGAAGCTGCGAAGAA+AGG 0.412024 3_4:-76028067 None:intergenic
GTATCAGACTCATCACATTC+AGG 0.421362 3_4:-76028133 None:intergenic
CTTGAAGTTGGTGATGAGAT+AGG 0.423563 3_4:-76027977 None:intergenic
GGGAACATGCTGCGAGCATA+TGG 0.428278 3_4:-76027902 None:intergenic
AAGGATTCATGAAGTGGGCT+TGG 0.442178 3_4:+76028348 Msa0522710:CDS
GCAGGTCAAGCCTTGGGTTG+GGG 0.445549 3_4:+76028324 Msa0522710:CDS
GAAACACCAGGCGACGGTGC+AGG 0.453828 3_4:+76027722 Msa0522710:CDS
GGAGGGAGAGAGAGAACAAC+AGG 0.454864 3_4:+76026784 Msa0522710:CDS
GAAGGATGTCCCTGATGCTT+TGG 0.455024 3_4:-76028038 None:intergenic
TAGGTGGTGTATAAAGGTTC+CGG 0.456174 3_4:-76028105 None:intergenic
TCATCACATTCAGGAATAGT+AGG 0.457941 3_4:-76028124 None:intergenic
ATTTCCGAGCCCGTCTCGTA+TGG 0.458323 3_4:+76027850 Msa0522710:CDS
AAGAGGAAGATGGGCTAACT+TGG 0.459342 3_4:-76027826 None:intergenic
TTACGCGGGATTAAGGTCTC+AGG 0.461228 3_4:+76026845 Msa0522710:CDS
AAATTTCCTGCACCGTCGCC+TGG 0.461316 3_4:-76027728 None:intergenic
AAAGCTCTTTGTGCTGAAGC+TGG 0.466712 3_4:+76026912 Msa0522710:CDS
CAAAGGTGGGAGAGACATGT+TGG 0.476794 3_4:-76027924 None:intergenic
TGAACACTGAACAGGGATCA+AGG 0.477060 3_4:+76027696 Msa0522710:intron
GATTCCCATGTTGGAATCAT+GGG 0.479782 3_4:-76028010 None:intergenic
GATACTTCTACTGTTGAGTC+TGG 0.480255 3_4:+76028151 Msa0522710:CDS
TAGCAGAAGCTGCAAAGGCT+TGG 0.482094 3_4:-76028189 None:intergenic
TCAAGCCTTGGGTTGGGGAA+AGG 0.483086 3_4:+76028329 Msa0522710:CDS
GCATCCATACGAGACGGGCT+CGG 0.486953 3_4:-76027854 None:intergenic
TGGTAGGAAGGGATTGGACT+TGG 0.487033 3_4:-76027806 None:intergenic
AATGATGATGAAAGAGGACT+TGG 0.489656 3_4:-76027782 None:intergenic
TTGGCAATTGATTCCCATGT+TGG 0.490224 3_4:-76028019 None:intergenic
CTGGACGGAACTCTTATTGT+GGG 0.491424 3_4:-76028644 None:intergenic
ATCTCCTGCATTCTGTTATG+AGG 0.491673 3_4:-76028274 None:intergenic
TTGACCTGCACCCCAAACTC+TGG 0.493982 3_4:-76028310 None:intergenic
GCGCAGAAGCTGCGAAGAAA+GGG 0.494226 3_4:-76028066 None:intergenic
AAAGGTGGGAGAGACATGTT+GGG 0.494510 3_4:-76027923 None:intergenic
GGTTTGGGATTTCTTGAAGT+TGG 0.496117 3_4:-76027989 None:intergenic
CTCTTTGTGCTGAAGCTGGT+TGG 0.496259 3_4:+76026916 Msa0522710:CDS
AGGCTTGGAAATTCAACCAT+TGG 0.499150 3_4:-76028174 None:intergenic
GGTTTCATAAAGTTCAATGT+AGG 0.500604 3_4:-76028223 None:intergenic
CTCGGAAATGAAGAGGAAGA+TGG 0.501823 3_4:-76027836 None:intergenic
GATGGGCTAACTTGGTAGGA+AGG 0.510153 3_4:-76027818 None:intergenic
ACTCTCATTACAAGTTTACC+TGG 0.512143 3_4:-76028663 None:intergenic
CCTGGACGGAACTCTTATTG+TGG 0.512245 3_4:-76028645 None:intergenic
TAAAAGTACCCTGCGATAAG+TGG 0.514725 3_4:-76026958 None:intergenic
TGCGAAGAAAGGGTGATTGA+AGG 0.517777 3_4:-76028056 None:intergenic
GATGAGATAGGTGGCGTCAC+AGG 0.527145 3_4:-76027965 None:intergenic
CTAACTTGGTAGGAAGGGAT+TGG 0.532618 3_4:-76027812 None:intergenic
TGATTTAGCAGAAGCTGCAA+AGG 0.535526 3_4:-76028194 None:intergenic
TGTTTGCATCCATACGAGAC+GGG 0.538446 3_4:-76027859 None:intergenic
CCACAATAAGAGTTCCGTCC+AGG 0.539358 3_4:+76028645 Msa0522710:three_prime_UTR
CTGTTTGATATTCTCAAAGG+TGG 0.543504 3_4:-76027938 None:intergenic
TTCCGGTGGGATGGACTAGT+AGG 0.544807 3_4:-76028088 None:intergenic
GTATAAAGGTTCCGGTGGGA+TGG 0.546631 3_4:-76028097 None:intergenic
TGAATCCTTTCCCCAACCCA+AGG 0.565111 3_4:-76028334 None:intergenic
AAGATGGCACCACTTATCGC+AGG 0.566281 3_4:+76026949 Msa0522710:CDS
GGATCAAGGGCAGAAACACC+AGG 0.568579 3_4:+76027710 Msa0522710:CDS
TCGTCGGAAGCCGTCGTGGA+GGG 0.569962 3_4:+76026767 Msa0522710:CDS
GGAAGATGGGCTAACTTGGT+AGG 0.570068 3_4:-76027822 None:intergenic
AACAACAACGAGGAGAGGAC+AGG 0.573582 3_4:+76026619 Msa0522710:five_prime_UTR
ATGGGCTAACTTGGTAGGAA+GGG 0.578259 3_4:-76027817 None:intergenic
CCAAACCCATGATTCCAACA+TGG 0.578571 3_4:+76028005 Msa0522710:CDS
AGAGGTGCAGCAGTGTGGAA+TGG 0.578750 3_4:+76026710 Msa0522710:exon
TACGCGGGATTAAGGTCTCA+GGG 0.579295 3_4:+76026846 Msa0522710:CDS
CTACTGTTGAGTCTGGCCAA+TGG 0.579821 3_4:+76028158 Msa0522710:CDS
TTGTTTGCATCCATACGAGA+CGG 0.580413 3_4:-76027860 None:intergenic
CTTGGAAATGATGATGAAAG+AGG 0.585676 3_4:-76027788 None:intergenic
TATACTAGTCTTCATTAACT+AGG 0.587526 3_4:-76028406 None:intergenic
TCGGAAATGAAGAGGAAGAT+GGG 0.591259 3_4:-76027835 None:intergenic
GAACACTGAACAGGGATCAA+GGG 0.592233 3_4:+76027697 Msa0522710:intron
GCTGCCTCATAACAGAATGC+AGG 0.597111 3_4:+76028270 Msa0522710:CDS
GATTTCAGAGCCAGAGTTTG+GGG 0.597331 3_4:+76028300 Msa0522710:CDS
GAGACGGAGGAGAGCTATAG+CGG 0.598645 3_4:+76026815 Msa0522710:CDS
GTGGTGTATAAAGGTTCCGG+TGG 0.599334 3_4:-76028102 None:intergenic
GGTTGGACTGTTGAAGAAGA+TGG 0.599436 3_4:+76026933 Msa0522710:CDS
TGGGGAAAGGATTCATGAAG+TGG 0.599526 3_4:+76028342 Msa0522710:CDS
GCGCTGTTTGATATTCTCAA+AGG 0.602416 3_4:-76027941 None:intergenic
TCATTACAAGTTTACCTGGA+CGG 0.603161 3_4:-76028659 None:intergenic
CAGTGTGGAATGGCTTCTGA+CGG 0.605971 3_4:+76026720 Msa0522710:exon
TTGTAATGAGAGTGTAATGA+CGG 0.606652 3_4:+76028673 Msa0522710:three_prime_UTR
GTCGTCGGAAGCCGTCGTGG+AGG 0.608313 3_4:+76026766 Msa0522710:CDS
CGCCTACTAGTCCATCCCAC+CGG 0.608831 3_4:+76028086 Msa0522710:CDS
TGTTTGATATTCTCAAAGGT+GGG 0.611100 3_4:-76027937 None:intergenic
ACAACAGGAGGAGAGAGAGA+CGG 0.611729 3_4:+76026799 Msa0522710:CDS
ATAACAGAATGCAGGAGATG+AGG 0.612424 3_4:+76028278 Msa0522710:CDS
AGGGCAGAAACACCAGGCGA+CGG 0.612624 3_4:+76027716 Msa0522710:CDS
TTCTCTCTCTCCCTCCACGA+CGG 0.613396 3_4:-76026777 None:intergenic
CAAACCCATGATTCCAACAT+GGG 0.619565 3_4:+76028006 Msa0522710:CDS
AGACGGGCTCGGAAATGAAG+AGG 0.620195 3_4:-76027843 None:intergenic
AATTGAACAACAACGAGGAG+AGG 0.620364 3_4:+76026614 Msa0522710:five_prime_UTR
CAGCGGCGAATTCAAGTCGT+CGG 0.624367 3_4:+76026751 Msa0522710:CDS
GCTTACTCTTGGAAATGGAA+AGG 0.624748 3_4:+76028381 Msa0522710:CDS
CAAGTCGTCGGAAGCCGTCG+TGG 0.626877 3_4:+76026763 Msa0522710:CDS
GGGGAAAGGATTCATGAAGT+GGG 0.628370 3_4:+76028343 Msa0522710:CDS
TCAGCTACGACGCAGTTCAG+AGG 0.629961 3_4:+76026692 Msa0522710:five_prime_UTR
ACAGGAGGAGAGAGAGACGG+AGG 0.634956 3_4:+76026802 Msa0522710:CDS
GGGAGAGAGAGAACAACAGG+AGG 0.636818 3_4:+76026787 Msa0522710:CDS
ATAGCGGCAAAGATTTACGC+GGG 0.642415 3_4:+76026831 Msa0522710:CDS
AATCAATTGCCAAAGCATCA+GGG 0.645925 3_4:+76028029 Msa0522710:CDS
TGTAATGACGGAATGACCCA+TGG 0.646414 3_4:+76028685 Msa0522710:three_prime_UTR
TCACATTCAGGAATAGTAGG+TGG 0.669687 3_4:-76028121 None:intergenic
AAAACACTGTGATAACAATG+AGG 0.672851 3_4:+76026884 Msa0522710:CDS
AGATGGCACCACTTATCGCA+GGG 0.680637 3_4:+76026950 Msa0522710:CDS
TGGTGTATAAAGGTTCCGGT+GGG 0.684999 3_4:-76028101 None:intergenic
AAATGAACTCACGAGGAATG+CGG 0.687204 3_4:-76026644 None:intergenic
TTCTGACGGAGCAACTTCAG+CGG 0.689590 3_4:+76026734 Msa0522710:CDS
GAGTAGTAAATGAACTCACG+AGG 0.700575 3_4:-76026651 None:intergenic
TATAGCGGCAAAGATTTACG+CGG 0.709001 3_4:+76026830 Msa0522710:CDS
AGTTCAGAGGTGCAGCAGTG+TGG 0.709625 3_4:+76026705 Msa0522710:five_prime_UTR
ACGCGGGATTAAGGTCTCAG+GGG 0.722971 3_4:+76026847 Msa0522710:CDS
AAGGTGGGAGAGACATGTTG+GGG 0.734444 3_4:-76027922 None:intergenic
GAAGTTGGTGATGAGATAGG+TGG 0.736539 3_4:-76027974 None:intergenic
TCATAAATTGAACAACAACG+AGG 0.799135 3_4:+76026609 Msa0522710:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_4:76027405-76027424 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_4:76027620-76027639 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_4:76028618-76028637 Msa0522710:three_prime_UTR 15.0%
!!! TTTATTTTTTTGAAGAAAGA+TGG - chr3_4:76027405-76027424 None:intergenic 15.0%
!! TTGAATAAACAACTTAATTA+AGG - chr3_4:76027620-76027639 None:intergenic 15.0%
!!! TAATAATCCTTTAAAATCTA+TGG + chr3_4:76028618-76028637 Msa0522710:three_prime_UTR 15.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_4:76027111-76027130 Msa0522710:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_4:76027175-76027194 Msa0522710:intron 20.0%
!!! AGTTTTGATGAAATTTTGTT+TGG + chr3_4:76027111-76027130 Msa0522710:intron 20.0%
!! AATCTGAGTCAAATTAATTT+CGG + chr3_4:76027175-76027194 Msa0522710:intron 20.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_4:76027116-76027135 Msa0522710:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_4:76027212-76027231 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_4:76027474-76027493 Msa0522710:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_4:76027475-76027494 Msa0522710:intron 25.0%
! ACTCAGATAAATCAATTCAA+AGG - chr3_4:76027503-76027522 None:intergenic 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_4:76027649-76027668 Msa0522710:intron 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_4:76028409-76028428 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_4:76028409-76028428 Msa0522710:exon 25.0%
!!! TGATGAAATTTTGTTTGGTT+TGG + chr3_4:76027116-76027135 Msa0522710:intron 25.0%
! AACTAGTAGTTGATTAATTG+AGG - chr3_4:76027212-76027231 None:intergenic 25.0%
! TTGAACAATCTAATCTGATT+TGG + chr3_4:76027474-76027493 Msa0522710:intron 25.0%
! TGAACAATCTAATCTGATTT+GGG + chr3_4:76027475-76027494 Msa0522710:intron 25.0%
! ACTCAGATAAATCAATTCAA+AGG - chr3_4:76027503-76027522 None:intergenic 25.0%
!! TATCTGATAAGAATCTGTTT+TGG + chr3_4:76027649-76027668 Msa0522710:intron 25.0%
!!! TATACTAGTCTTCATTAACT+AGG - chr3_4:76028409-76028428 None:intergenic 25.0%
! AGTTAATGAAGACTAGTATA+TGG + chr3_4:76028409-76028428 Msa0522710:exon 25.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG - chr3_4:76026548-76026567 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG - chr3_4:76026553-76026572 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_4:76026560-76026579 Msa0522710:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_4:76026609-76026628 Msa0522710:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_4:76026885-76026904 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_4:76026884-76026903 Msa0522710:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG - chr3_4:76026987-76027006 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_4:76027066-76027085 Msa0522710:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_4:76027149-76027168 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_4:76027362-76027381 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_4:76027438-76027457 Msa0522710:intron 30.0%
ATCAGTGATGTGTGATTATT+TGG + chr3_4:76027529-76027548 Msa0522710:intron 30.0%
! TTGGATTTTGCGATGAAAAT+GGG - chr3_4:76027766-76027785 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_4:76027940-76027959 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_4:76028226-76028245 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_4:76028247-76028266 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_4:76028441-76028460 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_4:76028483-76028502 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_4:76028628-76028647 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_4:76028673-76028692 Msa0522710:three_prime_UTR 30.0%
!!! GTTCTTGTTTTTGTTTGGTT+TGG - chr3_4:76026548-76026567 None:intergenic 30.0%
!!! CTGTTGTTCTTGTTTTTGTT+TGG - chr3_4:76026553-76026572 None:intergenic 30.0%
ACAAGAACAACAGTAGTATA+AGG + chr3_4:76026560-76026579 Msa0522710:five_prime_UTR 30.0%
TCATAAATTGAACAACAACG+AGG + chr3_4:76026609-76026628 Msa0522710:five_prime_UTR 30.0%
! TCATTGTTATCACAGTGTTT+TGG - chr3_4:76026885-76026904 None:intergenic 30.0%
AAAACACTGTGATAACAATG+AGG + chr3_4:76026884-76026903 Msa0522710:CDS 30.0%
TCCAAAAAAGAAAAGTGAGA+GGG - chr3_4:76026987-76027006 None:intergenic 30.0%
GATTCAAATCTTACTGCAAT+TGG + chr3_4:76027066-76027085 Msa0522710:intron 30.0%
TTCCTTTGACTGAAAATACA+AGG - chr3_4:76027149-76027168 None:intergenic 30.0%
TGATAGCATTTCATTTCACA+CGG - chr3_4:76027362-76027381 None:intergenic 30.0%
AAACAATGGGTAATCCTAAT+TGG + chr3_4:76027438-76027457 Msa0522710:intron 30.0%
ATCAGTGATGTGTGATTATT+TGG + chr3_4:76027529-76027548 Msa0522710:intron 30.0%
! TTGGATTTTGCGATGAAAAT+GGG - chr3_4:76027766-76027785 None:intergenic 30.0%
TGTTTGATATTCTCAAAGGT+GGG - chr3_4:76027940-76027959 None:intergenic 30.0%
GGTTTCATAAAGTTCAATGT+AGG - chr3_4:76028226-76028245 None:intergenic 30.0%
TTATGCTGCTCATTAATTAC+AGG - chr3_4:76028247-76028266 None:intergenic 30.0%
ATAAAAATGCTCATAGCATC+TGG - chr3_4:76028441-76028460 None:intergenic 30.0%
AAGAGAATAAATGAGAGTTC+TGG - chr3_4:76028483-76028502 None:intergenic 30.0%
! TGGGTATCCATAGATTTTAA+AGG - chr3_4:76028628-76028647 None:intergenic 30.0%
! TTGTAATGAGAGTGTAATGA+CGG + chr3_4:76028673-76028692 Msa0522710:three_prime_UTR 30.0%
!! TCCCTCTCACTTTTCTTTTT+TGG + chr3_4:76026983-76027002 Msa0522710:intron 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG - chr3_4:76026988-76027007 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG + chr3_4:76027044-76027063 Msa0522710:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_4:76027070-76027089 Msa0522710:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_4:76027144-76027163 Msa0522710:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_4:76027288-76027307 Msa0522710:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_4:76027292-76027311 Msa0522710:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_4:76027303-76027322 None:intergenic 35.0%
! ATTTTCCAATGTGGCATAGT+TGG - chr3_4:76027336-76027355 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_4:76027455-76027474 None:intergenic 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_4:76027688-76027707 Msa0522710:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_4:76027689-76027708 Msa0522710:intron 35.0%
! CTTGGATTTTGCGATGAAAA+TGG - chr3_4:76027767-76027786 None:intergenic 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_4:76027785-76027804 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_4:76027791-76027810 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_4:76027941-76027960 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_4:76028029-76028048 Msa0522710:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_4:76028114-76028133 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_4:76028127-76028146 None:intergenic 35.0%
TCATTACAAGTTTACCTGGA+CGG - chr3_4:76028662-76028681 None:intergenic 35.0%
ACTCTCATTACAAGTTTACC+TGG - chr3_4:76028666-76028685 None:intergenic 35.0%
!! TCCCTCTCACTTTTCTTTTT+TGG + chr3_4:76026983-76027002 Msa0522710:intron 35.0%
CTCCAAAAAAGAAAAGTGAG+AGG - chr3_4:76026988-76027007 None:intergenic 35.0%
TCTTCATATCTACGTACTGT+TGG + chr3_4:76027044-76027063 Msa0522710:intron 35.0%
CAAATCTTACTGCAATTGGT+TGG + chr3_4:76027070-76027089 Msa0522710:intron 35.0%
! TGCCTTGTATTTTCAGTCAA+AGG + chr3_4:76027144-76027163 Msa0522710:intron 35.0%
!! TTGCTGCTTTGTCCAATTTA+AGG + chr3_4:76027288-76027307 Msa0522710:intron 35.0%
! TGCTTTGTCCAATTTAAGGT+AGG + chr3_4:76027292-76027311 Msa0522710:intron 35.0%
CATAGACACCTACCTTAAAT+TGG - chr3_4:76027303-76027322 None:intergenic 35.0%
! ATTTTCCAATGTGGCATAGT+TGG - chr3_4:76027336-76027355 None:intergenic 35.0%
AATCAAACACAGCACCAATT+AGG - chr3_4:76027455-76027474 None:intergenic 35.0%
TTTGTGAATGAACACTGAAC+AGG + chr3_4:76027688-76027707 Msa0522710:intron 35.0%
TTGTGAATGAACACTGAACA+GGG + chr3_4:76027689-76027708 Msa0522710:intron 35.0%
! CTTGGATTTTGCGATGAAAA+TGG - chr3_4:76027767-76027786 None:intergenic 35.0%
! AATGATGATGAAAGAGGACT+TGG - chr3_4:76027785-76027804 None:intergenic 35.0%
! CTTGGAAATGATGATGAAAG+AGG - chr3_4:76027791-76027810 None:intergenic 35.0%
CTGTTTGATATTCTCAAAGG+TGG - chr3_4:76027941-76027960 None:intergenic 35.0%
! AATCAATTGCCAAAGCATCA+GGG + chr3_4:76028029-76028048 Msa0522710:CDS 35.0%
GAATAGTAGGTGGTGTATAA+AGG - chr3_4:76028114-76028133 None:intergenic 35.0%
TCATCACATTCAGGAATAGT+AGG - chr3_4:76028127-76028146 None:intergenic 35.0%
TCATTACAAGTTTACCTGGA+CGG - chr3_4:76028662-76028681 None:intergenic 35.0%
ACTCTCATTACAAGTTTACC+TGG - chr3_4:76028666-76028685 None:intergenic 35.0%
AATTGAACAACAACGAGGAG+AGG + chr3_4:76026614-76026633 Msa0522710:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_4:76026647-76026666 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_4:76026654-76026673 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_4:76026830-76026849 Msa0522710:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_4:76026838-76026857 Msa0522710:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_4:76026961-76026980 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_4:76027345-76027364 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_4:76027838-76027857 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_4:76027863-76027882 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_4:76027944-76027963 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_4:76027980-76027999 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_4:76027992-76028011 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_4:76028007-76028026 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_4:76028006-76028025 Msa0522710:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_4:76028013-76028032 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_4:76028014-76028033 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_4:76028022-76028041 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_4:76028028-76028047 Msa0522710:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_4:76028108-76028127 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_4:76028124-76028143 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_4:76028136-76028155 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_4:76028151-76028170 Msa0522710:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_4:76028177-76028196 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_4:76028197-76028216 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_4:76028277-76028296 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_4:76028278-76028297 Msa0522710:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_4:76028370-76028389 Msa0522710:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_4:76028376-76028395 Msa0522710:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_4:76028381-76028400 Msa0522710:CDS 40.0%
AATTGAACAACAACGAGGAG+AGG + chr3_4:76026614-76026633 Msa0522710:five_prime_UTR 40.0%
AAATGAACTCACGAGGAATG+CGG - chr3_4:76026647-76026666 None:intergenic 40.0%
GAGTAGTAAATGAACTCACG+AGG - chr3_4:76026654-76026673 None:intergenic 40.0%
TATAGCGGCAAAGATTTACG+CGG + chr3_4:76026830-76026849 Msa0522710:CDS 40.0%
CAAAGATTTACGCGGGATTA+AGG + chr3_4:76026838-76026857 Msa0522710:CDS 40.0%
!! TAAAAGTACCCTGCGATAAG+TGG - chr3_4:76026961-76026980 None:intergenic 40.0%
! ACACGGAAGATTTTCCAATG+TGG - chr3_4:76027345-76027364 None:intergenic 40.0%
TCGGAAATGAAGAGGAAGAT+GGG - chr3_4:76027838-76027857 None:intergenic 40.0%
TTGTTTGCATCCATACGAGA+CGG - chr3_4:76027863-76027882 None:intergenic 40.0%
GCGCTGTTTGATATTCTCAA+AGG - chr3_4:76027944-76027963 None:intergenic 40.0%
!! CTTGAAGTTGGTGATGAGAT+AGG - chr3_4:76027980-76027999 None:intergenic 40.0%
! GGTTTGGGATTTCTTGAAGT+TGG - chr3_4:76027992-76028011 None:intergenic 40.0%
CATGTTGGAATCATGGGTTT+GGG - chr3_4:76028007-76028026 None:intergenic 40.0%
CAAACCCATGATTCCAACAT+GGG + chr3_4:76028006-76028025 Msa0522710:CDS 40.0%
GATTCCCATGTTGGAATCAT+GGG - chr3_4:76028013-76028032 None:intergenic 40.0%
TGATTCCCATGTTGGAATCA+TGG - chr3_4:76028014-76028033 None:intergenic 40.0%
! TTGGCAATTGATTCCCATGT+TGG - chr3_4:76028022-76028041 None:intergenic 40.0%
! GAATCAATTGCCAAAGCATC+AGG + chr3_4:76028028-76028047 Msa0522710:CDS 40.0%
TAGGTGGTGTATAAAGGTTC+CGG - chr3_4:76028108-76028127 None:intergenic 40.0%
TCACATTCAGGAATAGTAGG+TGG - chr3_4:76028124-76028143 None:intergenic 40.0%
GTATCAGACTCATCACATTC+AGG - chr3_4:76028136-76028155 None:intergenic 40.0%
GATACTTCTACTGTTGAGTC+TGG + chr3_4:76028151-76028170 Msa0522710:CDS 40.0%
AGGCTTGGAAATTCAACCAT+TGG - chr3_4:76028177-76028196 None:intergenic 40.0%
TGATTTAGCAGAAGCTGCAA+AGG - chr3_4:76028197-76028216 None:intergenic 40.0%
ATCTCCTGCATTCTGTTATG+AGG - chr3_4:76028277-76028296 None:intergenic 40.0%
ATAACAGAATGCAGGAGATG+AGG + chr3_4:76028278-76028297 Msa0522710:CDS 40.0%
! GATGATTTGGAGCTTACTCT+TGG + chr3_4:76028370-76028389 Msa0522710:CDS 40.0%
TTGGAGCTTACTCTTGGAAA+TGG + chr3_4:76028376-76028395 Msa0522710:CDS 40.0%
GCTTACTCTTGGAAATGGAA+AGG + chr3_4:76028381-76028400 Msa0522710:CDS 40.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_4:76026831-76026850 Msa0522710:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_4:76026912-76026931 Msa0522710:CDS 45.0%
GGTTGGACTGTTGAAGAAGA+TGG + chr3_4:76026933-76026952 Msa0522710:CDS 45.0%
TCCATCCAACTATGCCACAT+TGG + chr3_4:76027328-76027347 Msa0522710:intron 45.0%
TCCAATGTGGCATAGTTGGA+TGG - chr3_4:76027332-76027351 None:intergenic 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_4:76027696-76027715 Msa0522710:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_4:76027697-76027716 Msa0522710:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_4:76027815-76027834 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_4:76027820-76027839 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_4:76027829-76027848 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_4:76027839-76027858 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_4:76027862-76027881 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_4:76027926-76027945 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_4:76027977-76027996 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_4:76028008-76028027 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_4:76028005-76028024 Msa0522710:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_4:76028059-76028078 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_4:76028104-76028123 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_4:76028298-76028317 Msa0522710:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_4:76028299-76028318 Msa0522710:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_4:76028300-76028319 Msa0522710:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_4:76028342-76028361 Msa0522710:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_4:76028343-76028362 Msa0522710:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_4:76028348-76028367 Msa0522710:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_4:76028357-76028376 Msa0522710:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG - chr3_4:76028647-76028666 None:intergenic 45.0%
! TGTAATGACGGAATGACCCA+TGG + chr3_4:76028685-76028704 Msa0522710:three_prime_UTR 45.0%
ATAGCGGCAAAGATTTACGC+GGG + chr3_4:76026831-76026850 Msa0522710:CDS 45.0%
AAAGCTCTTTGTGCTGAAGC+TGG + chr3_4:76026912-76026931 Msa0522710:CDS 45.0%
GGTTGGACTGTTGAAGAAGA+TGG + chr3_4:76026933-76026952 Msa0522710:CDS 45.0%
TCCATCCAACTATGCCACAT+TGG + chr3_4:76027328-76027347 Msa0522710:intron 45.0%
TCCAATGTGGCATAGTTGGA+TGG - chr3_4:76027332-76027351 None:intergenic 45.0%
TGAACACTGAACAGGGATCA+AGG + chr3_4:76027696-76027715 Msa0522710:intron 45.0%
GAACACTGAACAGGGATCAA+GGG + chr3_4:76027697-76027716 Msa0522710:intron 45.0%
CTAACTTGGTAGGAAGGGAT+TGG - chr3_4:76027815-76027834 None:intergenic 45.0%
! ATGGGCTAACTTGGTAGGAA+GGG - chr3_4:76027820-76027839 None:intergenic 45.0%
!! AAGAGGAAGATGGGCTAACT+TGG - chr3_4:76027829-76027848 None:intergenic 45.0%
CTCGGAAATGAAGAGGAAGA+TGG - chr3_4:76027839-76027858 None:intergenic 45.0%
TGTTTGCATCCATACGAGAC+GGG - chr3_4:76027862-76027881 None:intergenic 45.0%
AAAGGTGGGAGAGACATGTT+GGG - chr3_4:76027926-76027945 None:intergenic 45.0%
!! GAAGTTGGTGATGAGATAGG+TGG - chr3_4:76027977-76027996 None:intergenic 45.0%
CCATGTTGGAATCATGGGTT+TGG - chr3_4:76028008-76028027 None:intergenic 45.0%
CCAAACCCATGATTCCAACA+TGG + chr3_4:76028005-76028024 Msa0522710:CDS 45.0%
TGCGAAGAAAGGGTGATTGA+AGG - chr3_4:76028059-76028078 None:intergenic 45.0%
TGGTGTATAAAGGTTCCGGT+GGG - chr3_4:76028104-76028123 None:intergenic 45.0%
AGGATTTCAGAGCCAGAGTT+TGG + chr3_4:76028298-76028317 Msa0522710:CDS 45.0%
GGATTTCAGAGCCAGAGTTT+GGG + chr3_4:76028299-76028318 Msa0522710:CDS 45.0%
GATTTCAGAGCCAGAGTTTG+GGG + chr3_4:76028300-76028319 Msa0522710:CDS 45.0%
TGGGGAAAGGATTCATGAAG+TGG + chr3_4:76028342-76028361 Msa0522710:CDS 45.0%
GGGGAAAGGATTCATGAAGT+GGG + chr3_4:76028343-76028362 Msa0522710:CDS 45.0%
! AAGGATTCATGAAGTGGGCT+TGG + chr3_4:76028348-76028367 Msa0522710:CDS 45.0%
! TGAAGTGGGCTTGGATGATT+TGG + chr3_4:76028357-76028376 Msa0522710:CDS 45.0%
CTGGACGGAACTCTTATTGT+GGG - chr3_4:76028647-76028666 None:intergenic 45.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_4:76027424-76027443 Msa0522710:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_4:76027425-76027444 Msa0522710:intron 5.0%
!! AATAAAAAATAAAAAAACAA+TGG + chr3_4:76027424-76027443 Msa0522710:intron 5.0%
!! ATAAAAAATAAAAAAACAAT+GGG + chr3_4:76027425-76027444 Msa0522710:intron 5.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_4:76026619-76026638 Msa0522710:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_4:76026720-76026739 Msa0522710:exon 50.0%
TTCTGACGGAGCAACTTCAG+CGG + chr3_4:76026734-76026753 Msa0522710:CDS 50.0%
ACAACAGGAGGAGAGAGAGA+CGG + chr3_4:76026799-76026818 Msa0522710:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_4:76026845-76026864 Msa0522710:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_4:76026846-76026865 Msa0522710:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_4:76026916-76026935 Msa0522710:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_4:76026949-76026968 Msa0522710:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_4:76026950-76026969 Msa0522710:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_4:76027809-76027828 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_4:76027821-76027840 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_4:76027825-76027844 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_4:76027925-76027944 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_4:76027927-76027946 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_4:76028041-76028060 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_4:76028100-76028119 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_4:76028105-76028124 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_4:76028158-76028177 Msa0522710:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_4:76028192-76028211 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_4:76028270-76028289 Msa0522710:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_4:76028337-76028356 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG - chr3_4:76028648-76028667 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG + chr3_4:76028645-76028664 Msa0522710:three_prime_UTR 50.0%
AACAACAACGAGGAGAGGAC+AGG + chr3_4:76026619-76026638 Msa0522710:five_prime_UTR 50.0%
CAGTGTGGAATGGCTTCTGA+CGG + chr3_4:76026720-76026739 Msa0522710:exon 50.0%
TTCTGACGGAGCAACTTCAG+CGG + chr3_4:76026734-76026753 Msa0522710:CDS 50.0%
ACAACAGGAGGAGAGAGAGA+CGG + chr3_4:76026799-76026818 Msa0522710:CDS 50.0%
TTACGCGGGATTAAGGTCTC+AGG + chr3_4:76026845-76026864 Msa0522710:CDS 50.0%
TACGCGGGATTAAGGTCTCA+GGG + chr3_4:76026846-76026865 Msa0522710:CDS 50.0%
CTCTTTGTGCTGAAGCTGGT+TGG + chr3_4:76026916-76026935 Msa0522710:CDS 50.0%
AAGATGGCACCACTTATCGC+AGG + chr3_4:76026949-76026968 Msa0522710:CDS 50.0%
AGATGGCACCACTTATCGCA+GGG + chr3_4:76026950-76026969 Msa0522710:CDS 50.0%
TGGTAGGAAGGGATTGGACT+TGG - chr3_4:76027809-76027828 None:intergenic 50.0%
!! GATGGGCTAACTTGGTAGGA+AGG - chr3_4:76027821-76027840 None:intergenic 50.0%
!! GGAAGATGGGCTAACTTGGT+AGG - chr3_4:76027825-76027844 None:intergenic 50.0%
AAGGTGGGAGAGACATGTTG+GGG - chr3_4:76027925-76027944 None:intergenic 50.0%
CAAAGGTGGGAGAGACATGT+TGG - chr3_4:76027927-76027946 None:intergenic 50.0%
GAAGGATGTCCCTGATGCTT+TGG - chr3_4:76028041-76028060 None:intergenic 50.0%
GTATAAAGGTTCCGGTGGGA+TGG - chr3_4:76028100-76028119 None:intergenic 50.0%
GTGGTGTATAAAGGTTCCGG+TGG - chr3_4:76028105-76028124 None:intergenic 50.0%
CTACTGTTGAGTCTGGCCAA+TGG + chr3_4:76028158-76028177 Msa0522710:CDS 50.0%
TAGCAGAAGCTGCAAAGGCT+TGG - chr3_4:76028192-76028211 None:intergenic 50.0%
GCTGCCTCATAACAGAATGC+AGG + chr3_4:76028270-76028289 Msa0522710:CDS 50.0%
TGAATCCTTTCCCCAACCCA+AGG - chr3_4:76028337-76028356 None:intergenic 50.0%
CCTGGACGGAACTCTTATTG+TGG - chr3_4:76028648-76028667 None:intergenic 50.0%
CCACAATAAGAGTTCCGTCC+AGG + chr3_4:76028645-76028664 Msa0522710:three_prime_UTR 50.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_4:76026692-76026711 Msa0522710:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_4:76026705-76026724 Msa0522710:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_4:76026710-76026729 Msa0522710:exon 55.0%
CAGCGGCGAATTCAAGTCGT+CGG + chr3_4:76026751-76026770 Msa0522710:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_4:76026780-76026799 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_4:76026784-76026803 Msa0522710:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_4:76026787-76026806 Msa0522710:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG + chr3_4:76026815-76026834 Msa0522710:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_4:76026847-76026866 Msa0522710:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_4:76027710-76027729 Msa0522710:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_4:76027731-76027750 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_4:76027846-76027865 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_4:76027850-76027869 Msa0522710:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_4:76027905-76027924 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_4:76027968-76027987 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_4:76028069-76028088 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_4:76028091-76028110 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_4:76028313-76028332 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_4:76028323-76028342 Msa0522710:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_4:76028329-76028348 Msa0522710:CDS 55.0%
TCAGCTACGACGCAGTTCAG+AGG + chr3_4:76026692-76026711 Msa0522710:five_prime_UTR 55.0%
! AGTTCAGAGGTGCAGCAGTG+TGG + chr3_4:76026705-76026724 Msa0522710:five_prime_UTR 55.0%
! AGAGGTGCAGCAGTGTGGAA+TGG + chr3_4:76026710-76026729 Msa0522710:exon 55.0%
CAGCGGCGAATTCAAGTCGT+CGG + chr3_4:76026751-76026770 Msa0522710:CDS 55.0%
TTCTCTCTCTCCCTCCACGA+CGG - chr3_4:76026780-76026799 None:intergenic 55.0%
GGAGGGAGAGAGAGAACAAC+AGG + chr3_4:76026784-76026803 Msa0522710:CDS 55.0%
GGGAGAGAGAGAACAACAGG+AGG + chr3_4:76026787-76026806 Msa0522710:CDS 55.0%
GAGACGGAGGAGAGCTATAG+CGG + chr3_4:76026815-76026834 Msa0522710:CDS 55.0%
ACGCGGGATTAAGGTCTCAG+GGG + chr3_4:76026847-76026866 Msa0522710:CDS 55.0%
GGATCAAGGGCAGAAACACC+AGG + chr3_4:76027710-76027729 Msa0522710:CDS 55.0%
AAATTTCCTGCACCGTCGCC+TGG - chr3_4:76027731-76027750 None:intergenic 55.0%
! AGACGGGCTCGGAAATGAAG+AGG - chr3_4:76027846-76027865 None:intergenic 55.0%
ATTTCCGAGCCCGTCTCGTA+TGG + chr3_4:76027850-76027869 Msa0522710:CDS 55.0%
GGGAACATGCTGCGAGCATA+TGG - chr3_4:76027905-76027924 None:intergenic 55.0%
GATGAGATAGGTGGCGTCAC+AGG - chr3_4:76027968-76027987 None:intergenic 55.0%
GCGCAGAAGCTGCGAAGAAA+GGG - chr3_4:76028069-76028088 None:intergenic 55.0%
!! TTCCGGTGGGATGGACTAGT+AGG - chr3_4:76028091-76028110 None:intergenic 55.0%
TTGACCTGCACCCCAAACTC+TGG - chr3_4:76028313-76028332 None:intergenic 55.0%
TGCAGGTCAAGCCTTGGGTT+GGG + chr3_4:76028323-76028342 Msa0522710:CDS 55.0%
!! TCAAGCCTTGGGTTGGGGAA+AGG + chr3_4:76028329-76028348 Msa0522710:CDS 55.0%
ACAGGAGGAGAGAGAGACGG+AGG + chr3_4:76026802-76026821 Msa0522710:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_4:76027716-76027735 Msa0522710:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_4:76027857-76027876 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_4:76028070-76028089 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_4:76028086-76028105 Msa0522710:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_4:76028306-76028325 Msa0522710:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_4:76028317-76028336 Msa0522710:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_4:76028318-76028337 Msa0522710:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_4:76028322-76028341 Msa0522710:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_4:76028324-76028343 Msa0522710:CDS 60.0%
ACAGGAGGAGAGAGAGACGG+AGG + chr3_4:76026802-76026821 Msa0522710:CDS 60.0%
AGGGCAGAAACACCAGGCGA+CGG + chr3_4:76027716-76027735 Msa0522710:CDS 60.0%
! GCATCCATACGAGACGGGCT+CGG - chr3_4:76027857-76027876 None:intergenic 60.0%
GGCGCAGAAGCTGCGAAGAA+AGG - chr3_4:76028070-76028089 None:intergenic 60.0%
CGCCTACTAGTCCATCCCAC+CGG + chr3_4:76028086-76028105 Msa0522710:CDS 60.0%
! AGAGCCAGAGTTTGGGGTGC+AGG + chr3_4:76028306-76028325 Msa0522710:CDS 60.0%
TTGGGGTGCAGGTCAAGCCT+TGG + chr3_4:76028317-76028336 Msa0522710:CDS 60.0%
TGGGGTGCAGGTCAAGCCTT+GGG + chr3_4:76028318-76028337 Msa0522710:CDS 60.0%
GTGCAGGTCAAGCCTTGGGT+TGG + chr3_4:76028322-76028341 Msa0522710:CDS 60.0%
! GCAGGTCAAGCCTTGGGTTG+GGG + chr3_4:76028324-76028343 Msa0522710:CDS 60.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_4:76026763-76026782 Msa0522710:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_4:76026767-76026786 Msa0522710:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_4:76027722-76027741 Msa0522710:CDS 65.0%
CAAGTCGTCGGAAGCCGTCG+TGG + chr3_4:76026763-76026782 Msa0522710:CDS 65.0%
TCGTCGGAAGCCGTCGTGGA+GGG + chr3_4:76026767-76026786 Msa0522710:CDS 65.0%
GAAACACCAGGCGACGGTGC+AGG + chr3_4:76027722-76027741 Msa0522710:CDS 65.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_4:76026766-76026785 Msa0522710:CDS 70.0%
GTCGTCGGAAGCCGTCGTGG+AGG + chr3_4:76026766-76026785 Msa0522710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76026459 76028707 76026459 ID=Msa0522710;Name=Msa0522710
chr3_4 mRNA 76026459 76028707 76026459 ID=Msa0522710-mRNA-1;Parent=Msa0522710;Name=Msa0522710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=270|1|1|1|1|1|2|293|315
chr3_4 exon 76026459 76026971 76026459 ID=Msa0522710-mRNA-1:exon:21856;Parent=Msa0522710-mRNA-1
chr3_4 exon 76027710 76028707 76027710 ID=Msa0522710-mRNA-1:exon:21857;Parent=Msa0522710-mRNA-1
chr3_4 five_prime_UTR 76026459 76026728 76026459 ID=Msa0522710-mRNA-1:five_prime_utr;Parent=Msa0522710-mRNA-1
chr3_4 CDS 76026729 76026971 76026729 ID=Msa0522710-mRNA-1:cds;Parent=Msa0522710-mRNA-1
chr3_4 CDS 76027710 76028414 76027710 ID=Msa0522710-mRNA-1:cds;Parent=Msa0522710-mRNA-1
chr3_4 three_prime_UTR 76028415 76028707 76028415 ID=Msa0522710-mRNA-1:three_prime_utr;Parent=Msa0522710-mRNA-1
Gene Sequence

>Msa0522710

ATGGCTTCTGACGGAGCAACTTCAGCGGCGAATTCAAGTCGTCGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACAGGAGGAGAGAGAGACGGAGGAGAGCTATAGCGGCAAAGATTTACGCGGGATTAAGGTCTCAGGGGAATTATAATTTACCAAAACACTGTGATAACAATGAGGTCTTGAAAGCTCTTTGTGCTGAAGCTGGTTGGACTGTTGAAGAAGATGGCACCACTTATCGCAGGGGATCAAGGGCAGAAACACCAGGCGACGGTGCAGGAAATTTTAACAGAAACAACCCATTTTCATCGCAAAATCCAAGTCCTCTTTCATCATCATTTCCAAGTCCAATCCCTTCCTACCAAGTTAGCCCATCTTCCTCTTCATTTCCGAGCCCGTCTCGTATGGATGCAAACAACAATGCATCAAATTACATTCCATATGCTCGCAGCATGTTCCCCAACATGTCTCTCCCACCTTTGAGAATATCAAACAGCGCGCCTGTGACGCCACCTATCTCATCACCAACTTCAAGAAATCCCAAACCCATGATTCCAACATGGGAATCAATTGCCAAAGCATCAGGGACATCCTTCAATCACCCTTTCTTCGCAGCTTCTGCGCCTACTAGTCCATCCCACCGGAACCTTTATACACCACCTACTATTCCTGAATGTGATGAGTCTGATACTTCTACTGTTGAGTCTGGCCAATGGTTGAATTTCCAAGCCTTTGCAGCTTCTGCTAAATCAGTCTCTCCTACATTGAACTTTATGAAACCTGTAATTAATGAGCAGCATAACATGCTGCCTCATAACAGAATGCAGGAGATGAGGATTTCAGAGCCAGAGTTTGGGGTGCAGGTCAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGCTTGGATGATTTGGAGCTTACTCTTGGAAATGGAAAGGCACCTAGTTAA
Protein sequence

>Msa0522710

MASDGATSAANSSRRKPSWRERENNRRRERRRRAIAAKIYAGLRSQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRRGSRAETPGDGAGNFNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNNASNYIPYARSMFPNMSLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASGTSFNHPFFAASAPTSPSHRNLYTPPTIPECDESDTSTVESGQWLNFQAFAASAKSVSPTLNFMKPVINEQHNMLPHNRMQEMRISEPEFGVQVKPWVGERIHEVGLDDLELTLGNGKAPS*