AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522850 MtrunA17_Chr3g0141611 93.784 370 21 1 1 368 1 370 0.0 662
Msa0522850 MtrunA17_Chr5g0404201 55.399 213 93 1 111 321 59 271 2.82e-85 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522850 AT1G75230.2 60.156 384 119 5 6 372 24 390 3.23e-145 419
Msa0522850 AT1G75230.1 60.526 380 116 5 6 368 24 386 6.68e-145 418
Msa0522850 AT1G19480.2 61.517 356 116 6 15 368 41 377 1.03e-144 417
Msa0522850 AT1G19480.1 61.798 356 115 6 15 368 41 377 1.66e-144 417
Msa0522850 AT3G50880.1 54.152 277 90 4 46 320 29 270 1.59e-98 296

Find 155 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCATAGATAGAATT+TGG 0.148146 3_4:+76171492 Msa0522850:three_prime_UTR
GCTCAACAGCTTCGTCAAAT+TGG 0.169969 3_4:+76168209 Msa0522850:CDS
TGGTGGAATTGGTTGGCTTT+AGG 0.180405 3_4:-76167848 None:intergenic
CTTCGTCAAATTGGGGTTTC+TGG 0.192533 3_4:+76168218 Msa0522850:CDS
TGATTCCGCTATTGTAAATA+TGG 0.193076 3_4:+76168298 Msa0522850:CDS
TATGAATAACATGTTTAATA+TGG 0.206711 3_4:+76168694 Msa0522850:CDS
ACTATGCTTACTATGGTTAA+TGG 0.221809 3_4:+76168338 Msa0522850:CDS
GGTGGAATTGGTTGGCTTTA+GGG 0.224070 3_4:-76167847 None:intergenic
TGTGGTACTTTAAACAAAAC+TGG 0.240597 3_4:-76167406 None:intergenic
CTCAACAGCTTCGTCAAATT+GGG 0.256135 3_4:+76168210 Msa0522850:CDS
GCTGCTGTTGCCACTGGCAA+TGG 0.292196 3_4:+76168593 Msa0522850:CDS
AGCTAGTTATCTTCATGATT+TGG 0.297314 3_4:+76168247 Msa0522850:CDS
TTATTCATAGGATCCATAAT+TGG 0.299949 3_4:-76168680 None:intergenic
CTTGTAGGGCTGCCTGTGCT+TGG 0.309335 3_4:+76171119 Msa0522850:intron
CTATGCTTACTATGGTTAAT+GGG 0.309757 3_4:+76168339 Msa0522850:CDS
TGGTTAATGGGATTGGTTCT+TGG 0.310260 3_4:+76168351 Msa0522850:CDS
TTGTAGGGCTGCCTGTGCTT+GGG 0.324942 3_4:+76171120 Msa0522850:intron
TGGACATGACAACTTGAAAT+TGG 0.333635 3_4:-76171384 None:intergenic
TTGGTACTGTGGTTTGGAAT+TGG 0.334137 3_4:+76171418 Msa0522850:three_prime_UTR
GCATTCACAACAACCAATTA+TGG 0.336085 3_4:+76168667 Msa0522850:CDS
TTGGGTCGGGTGAGACCTTT+CGG 0.350316 3_4:-76167800 None:intergenic
TACCGCTTGGTACTGTGGTT+TGG 0.357365 3_4:+76171412 Msa0522850:three_prime_UTR
ATATTAAACATGTTATTCAT+AGG 0.364793 3_4:-76168692 None:intergenic
CTTATCGTTCGGTTGCTTCA+TGG 0.372094 3_4:+76168525 Msa0522850:CDS
AGCAATAAACCGGGTATAGA+TGG 0.372851 3_4:-76168135 None:intergenic
ATGAATAACATGTTTAATAT+GGG 0.373528 3_4:+76168695 Msa0522850:CDS
CTTACTATGGTTAATGGGAT+TGG 0.385045 3_4:+76168344 Msa0522850:CDS
TGGTACTGTGGTTTGGAATT+GGG 0.386760 3_4:+76171419 Msa0522850:three_prime_UTR
ATTGAGATTCGGAGGTTGTT+GGG 0.390972 3_4:-76167818 None:intergenic
GGTACAAGATACTACGGGTT+AGG 0.395255 3_4:-76168085 None:intergenic
TGAATTCAATCCCTCACATA+TGG 0.399085 3_4:+76167596 Msa0522850:exon
AAGGACTCACATTAGATATA+AGG 0.399885 3_4:-76171443 None:intergenic
GATTCGGAGGTTGTTGGGTC+GGG 0.407111 3_4:-76167813 None:intergenic
TGGCTTGCAGCAGCATGAGC+TGG 0.409325 3_4:+76168613 Msa0522850:CDS
CGAACACCAAGATCATTAAT+CGG 0.413843 3_4:-76168422 None:intergenic
GTTAGGGCAAGAACATTATC+AGG 0.416123 3_4:-76168185 None:intergenic
AACCTGTGCAAGATTAATAA+AGG 0.417957 3_4:+76171312 Msa0522850:three_prime_UTR
CTCCTAACCCTATCGGTAAC+CGG 0.418716 3_4:+76167561 Msa0522850:five_prime_UTR
GACGAAGCTGTTGAGCAGTT+AGG 0.418751 3_4:-76168202 None:intergenic
ACCCCTTGTGGTTGTGGCTG+AGG 0.426942 3_4:-76167639 None:intergenic
ACGAAGCTGTTGAGCAGTTA+GGG 0.427388 3_4:-76168201 None:intergenic
CGATTAATGATCTTGGTGTT+CGG 0.428190 3_4:+76168423 Msa0522850:CDS
GTTCTTCCGATTAATGATCT+TGG 0.429181 3_4:+76168416 Msa0522850:CDS
ATGATCTTGGTGTTCGGAAA+GGG 0.431899 3_4:+76168429 Msa0522850:CDS
TAGGGTTTCCGATTGAGATT+CGG 0.437075 3_4:-76167829 None:intergenic
ACTGCTGCTGCTGTTGCCAC+TGG 0.440661 3_4:+76168587 Msa0522850:CDS
TTCACGTCGTGTTAGCGAAT+GGG 0.441456 3_4:+76171468 Msa0522850:three_prime_UTR
CACCGGTTACCGATAGGGTT+AGG 0.442756 3_4:-76167563 None:intergenic
ATTGCTCAGTTCGGATTCTA+CGG 0.445751 3_4:-76167721 None:intergenic
CCGGCGGTGGTGGAATTGGT+TGG 0.451771 3_4:-76167855 None:intergenic
GCTCTATGCGGCGGTGAAGC+TGG 0.455065 3_4:+76168155 Msa0522850:CDS
TCATTAATCGGAAGAACATC+AGG 0.455995 3_4:-76168410 None:intergenic
CGGCTTTAAAAGCGAGTTGT+TGG 0.456722 3_4:-76168106 None:intergenic
TTAGGGCAAGGAATGGAGTC+TGG 0.460253 3_4:-76168067 None:intergenic
CATGCCGTTATGCATACTTA+AGG 0.465792 3_4:+76171220 Msa0522850:CDS
TGATGGAACATTGCTCAGTT+CGG 0.471327 3_4:-76167730 None:intergenic
AGATTCGGAGGTTGTTGGGT+CGG 0.473762 3_4:-76167814 None:intergenic
GAAGAAACCCCTTGTGGTTG+TGG 0.474078 3_4:-76167645 None:intergenic
TTTAAACAAAACTGGGTGTA+CGG 0.479439 3_4:-76167398 None:intergenic
TGGCCTCCGACCATTACAAT+TGG 0.481111 3_4:-76171364 None:intergenic
GATTGAGATTCGGAGGTTGT+TGG 0.484783 3_4:-76167819 None:intergenic
TTTCACGTCGTGTTAGCGAA+TGG 0.485478 3_4:+76171467 Msa0522850:three_prime_UTR
TCCAAATTCTATCTATGCAA+AGG 0.485971 3_4:-76171493 None:intergenic
AACAACCTCCGAATCTCAAT+CGG 0.488511 3_4:+76167821 Msa0522850:CDS
CGGTTGCTTCATGGTATATG+TGG 0.491099 3_4:+76168534 Msa0522850:CDS
GACGGAGTCGACAGCGGTGG+TGG 0.492448 3_4:-76167685 None:intergenic
TGTAGGGCTGCCTGTGCTTG+GGG 0.497587 3_4:+76171121 Msa0522850:intron
CGCCGCATAGAGCAATAAAC+CGG 0.498184 3_4:-76168145 None:intergenic
AGCCTTTATTAATCTTGCAC+AGG 0.503610 3_4:-76171314 None:intergenic
GTGGAGGTTTGTTGAAGCGA+AGG 0.503950 3_4:+76168553 Msa0522850:CDS
CCAAATTCTATCTATGCAAA+GGG 0.504620 3_4:-76171492 None:intergenic
GAAGTGGAAGCCTTATCGTT+CGG 0.505451 3_4:+76168514 Msa0522850:CDS
CGCTAACACGACGTGAAACA+AGG 0.505668 3_4:-76171462 None:intergenic
GCTGCTGCTGCTGTTGATGG+TGG 0.507705 3_4:-76168637 None:intergenic
GAATTCAATCCCTCACATAT+GGG 0.513716 3_4:+76167597 Msa0522850:exon
TGGAGGTTTGTTGAAGCGAA+GGG 0.516701 3_4:+76168554 Msa0522850:CDS
AATTTCACCGGTTACCGATA+GGG 0.516784 3_4:-76167568 None:intergenic
CTTGCCTCGGCCATCTCAGA+TGG 0.518209 3_4:+76168478 Msa0522850:CDS
CAGTACCAAGCGGTAAAAGA+TGG 0.519927 3_4:-76171404 None:intergenic
ATCATCCATATTTACAATAG+CGG 0.520609 3_4:-76168303 None:intergenic
TTGGATGTCAATATAAATGC+TGG 0.521047 3_4:+76171511 Msa0522850:three_prime_UTR
ACAATTGAGGTTCGTTGTTG+TGG 0.522531 3_4:-76167915 None:intergenic
TTGCTCAGTTCGGATTCTAC+GGG 0.522751 3_4:-76167720 None:intergenic
GTTATCTTCATGATTTGGCT+AGG 0.524825 3_4:+76168252 Msa0522850:CDS
GCAACAGCAGCAGCAGTTGA+AGG 0.531886 3_4:-76168581 None:intergenic
GGAGTCGACAGCGGTGGTGG+CGG 0.536044 3_4:-76167682 None:intergenic
AATGATCTTGGTGTTCGGAA+AGG 0.537519 3_4:+76168428 Msa0522850:CDS
CATGAAGCAACCGAACGATA+AGG 0.537784 3_4:-76168524 None:intergenic
TAATTTCACCGGTTACCGAT+AGG 0.540017 3_4:-76167569 None:intergenic
GTGCGAAGGTGAAGTTGAGA+TGG 0.543548 3_4:+76167965 Msa0522850:CDS
TGGCTAGGAAGTATCAGAAT+GGG 0.545890 3_4:+76168267 Msa0522850:CDS
GTACAAGATACTACGGGTTA+GGG 0.549172 3_4:-76168084 None:intergenic
GGTGGCGGAGATTGTGTTGT+CGG 0.551572 3_4:-76167667 None:intergenic
GTTGTTGGTACAAGATACTA+CGG 0.551894 3_4:-76168091 None:intergenic
TATTTGCCAATTGTAATGGT+CGG 0.553222 3_4:+76171358 Msa0522850:three_prime_UTR
CTATCACTGTCCCCAAGCAC+AGG 0.554417 3_4:-76171131 None:intergenic
TTGCTTCATGGTATATGTGG+AGG 0.557460 3_4:+76168537 Msa0522850:CDS
TTGCTTAAGATTGCATATGT+TGG 0.557615 3_4:+76168807 Msa0522850:intron
CTTTCTCCTCCTAACCCTAT+CGG 0.559273 3_4:+76167554 Msa0522850:five_prime_UTR
TCGGATCTTACGAGGACGGA+GGG 0.560273 3_4:-76167781 None:intergenic
TTGGCTAGGAAGTATCAGAA+TGG 0.561670 3_4:+76168266 Msa0522850:CDS
TTGTTCCGAAAATTGTAGCT+AGG 0.562008 3_4:+76167934 Msa0522850:CDS
ATAATCTAGATGACTTGCCT+CGG 0.562183 3_4:+76168465 Msa0522850:CDS
TCAACAGCTTCGTCAAATTG+GGG 0.564716 3_4:+76168211 Msa0522850:CDS
CCGGGTATAGATGGAAGTAC+CGG 0.564853 3_4:-76168126 None:intergenic
TGATCTTGGTGTTCGGAAAG+GGG 0.566268 3_4:+76168430 Msa0522850:CDS
GAATTCAAGATTAATTTCAC+CGG 0.566777 3_4:-76167580 None:intergenic
GCATATGTTGGTGATAATGA+TGG 0.573390 3_4:+76168819 Msa0522850:CDS
CCGGTACTTCCATCTATACC+CGG 0.576685 3_4:+76168126 Msa0522850:CDS
TGGATCAATTATGTGAGAAG+TGG 0.576910 3_4:+76168498 Msa0522850:CDS
CATAATTGATCCATCTGAGA+TGG 0.576912 3_4:-76168488 None:intergenic
CTACGGGTTAGGGCAAGGAA+TGG 0.578814 3_4:-76168074 None:intergenic
TTGCCAATTGTAATGGTCGG+AGG 0.582097 3_4:+76171361 Msa0522850:three_prime_UTR
CAACGGACGGAACAACAAAA+CGG 0.582839 3_4:+76167884 Msa0522850:CDS
ATTGAGGTTCGTTGTTGTGG+TGG 0.584929 3_4:-76167912 None:intergenic
GCTAGGTCACTTTCGTGCGA+AGG 0.586188 3_4:+76167951 Msa0522850:CDS
AGATACTACGGGTTAGGGCA+AGG 0.587198 3_4:-76168079 None:intergenic
CCAACCAATTCCACCACCGC+CGG 0.587677 3_4:+76167855 Msa0522850:CDS
TACGGGGATAATAGTTTCGA+CGG 0.589338 3_4:-76167703 None:intergenic
CCGCCGGAAAATCCAACGGA+CGG 0.590648 3_4:+76167871 Msa0522850:CDS
CGATGAGAGGTGATAAGAGT+GGG 0.592687 3_4:-76168013 None:intergenic
CAACCTCAGCCACAACCACA+AGG 0.593857 3_4:+76167636 Msa0522850:CDS
TGAATAACATGTTTAATATG+GGG 0.599833 3_4:+76168696 Msa0522850:CDS
GGTTTCCGATTGAGATTCGG+AGG 0.602513 3_4:-76167826 None:intergenic
ACCTCAGCCACAACCACAAG+GGG 0.604739 3_4:+76167638 Msa0522850:CDS
CTTAAGTATGCATAACGGCA+TGG 0.605249 3_4:-76171219 None:intergenic
CGGTTACCGATAGGGTTAGG+AGG 0.609289 3_4:-76167560 None:intergenic
TGATCCATCTGAGATGGCCG+AGG 0.610828 3_4:-76168482 None:intergenic
TGTGTCTTCGCCCATATGTG+AGG 0.613351 3_4:-76167607 None:intergenic
CTGCTGCAAGCCATTGCCAG+TGG 0.628730 3_4:-76168603 None:intergenic
GAGACCTTTCGGATCTTACG+AGG 0.632398 3_4:-76167789 None:intergenic
GTGGTACTTTAAACAAAACT+GGG 0.638842 3_4:-76167405 None:intergenic
AGAGTGGGTCTGCGGTACGA+AGG 0.640787 3_4:-76167998 None:intergenic
GTGTCTTCGCCCATATGTGA+GGG 0.647109 3_4:-76167606 None:intergenic
TTCGGATCTTACGAGGACGG+AGG 0.648070 3_4:-76167782 None:intergenic
CGGTTTATTGCTCTATGCGG+CGG 0.648731 3_4:+76168146 Msa0522850:CDS
TTGTTGGTACAAGATACTAC+GGG 0.649339 3_4:-76168090 None:intergenic
AACCTCAGCCACAACCACAA+GGG 0.649650 3_4:+76167637 Msa0522850:CDS
CTATCCTTAAGTATGCATAA+CGG 0.652937 3_4:-76171224 None:intergenic
AGGTGATAAGAGTGGGTCTG+CGG 0.654092 3_4:-76168006 None:intergenic
AGTTTCGACGGAGTCGACAG+CGG 0.661441 3_4:-76167691 None:intergenic
CCGTCCTCGTAAGATCCGAA+AGG 0.662065 3_4:+76167785 Msa0522850:CDS
ACCACCGCCGGAAAATCCAA+CGG 0.663130 3_4:+76167867 Msa0522850:CDS
CCTTTCGGATCTTACGAGGA+CGG 0.664581 3_4:-76167785 None:intergenic
TTCGACGGAGTCGACAGCGG+TGG 0.669382 3_4:-76167688 None:intergenic
TGGAAATTATCAAACGTAGG+TGG 0.669577 3_4:-76168047 None:intergenic
TGCTCAGTTCGGATTCTACG+GGG 0.671223 3_4:-76167719 None:intergenic
TCGATGAGAGGTGATAAGAG+TGG 0.675819 3_4:-76168014 None:intergenic
ACCCGGTTTATTGCTCTATG+CGG 0.679051 3_4:+76168143 Msa0522850:CDS
TTCCAAACCACAGTACCAAG+CGG 0.684999 3_4:-76171414 None:intergenic
CGGATCTTACGAGGACGGAG+GGG 0.706604 3_4:-76167780 None:intergenic
GGTTGATGAATGTCGATGAG+AGG 0.708425 3_4:-76168026 None:intergenic
TTGTCGGAAGAAACCCCTTG+TGG 0.713634 3_4:-76167651 None:intergenic
GCCGCATAGAGCAATAAACC+GGG 0.722126 3_4:-76168144 None:intergenic
GTCTGGAAATTATCAAACGT+AGG 0.725407 3_4:-76168050 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAACATGTTATTCAT+AGG - chr3_4:76168695-76168714 None:intergenic 15.0%
!! TATGAATAACATGTTTAATA+TGG + chr3_4:76168694-76168713 Msa0522850:CDS 15.0%
!! ATGAATAACATGTTTAATAT+GGG + chr3_4:76168695-76168714 Msa0522850:CDS 15.0%
!! ATGATATTAACATATAAGAT+AGG + chr3_4:76169574-76169593 Msa0522850:intron 15.0%
!! AAAATTTGATTGACTAAATA+TGG + chr3_4:76169656-76169675 Msa0522850:intron 15.0%
!!! TCATTTTAATGTTTTTGATT+AGG + chr3_4:76169924-76169943 Msa0522850:intron 15.0%
!! AAAAAAATTTAGTCTGATTT+AGG - chr3_4:76169990-76170009 None:intergenic 15.0%
!!! CTAAATTTTTTTAATAGAGA+AGG + chr3_4:76169998-76170017 Msa0522850:intron 15.0%
!! ATGTAAAAACAAATAAACAA+GGG - chr3_4:76170092-76170111 None:intergenic 15.0%
!! AATGTAAAAACAAATAAACA+AGG - chr3_4:76170093-76170112 None:intergenic 15.0%
!!! ATCAATTATTTACCATATTT+TGG + chr3_4:76170441-76170460 Msa0522850:intron 15.0%
!!! TTTTTTGTCTTAATAAAGTT+AGG - chr3_4:76170719-76170738 None:intergenic 15.0%
!! AAATAAAAAAAGCAAAACTA+AGG - chr3_4:76171343-76171362 None:intergenic 15.0%
!! TGAATAACATGTTTAATATG+GGG + chr3_4:76168696-76168715 Msa0522850:CDS 20.0%
!! AACAGAAATTGAACAATAAT+AGG - chr3_4:76169331-76169350 None:intergenic 20.0%
!!! AGTCAATCAAATTTTATTCA+AGG - chr3_4:76169651-76169670 None:intergenic 20.0%
!! TCAATAAAAAAATATGTGAG+TGG + chr3_4:76169742-76169761 Msa0522850:intron 20.0%
!! TGACAAAATAATCTCTAATA+CGG - chr3_4:76170665-76170684 None:intergenic 20.0%
!!! TATAGAAGTACAACATATAT+AGG - chr3_4:76170793-76170812 None:intergenic 20.0%
!! AAATTATTGTTTCATTTGTC+CGG + chr3_4:76170896-76170915 Msa0522850:intron 20.0%
!! GCATATATAATTATAAAACC+CGG - chr3_4:76170918-76170937 None:intergenic 20.0%
!!! TTTTTATTTGCCAATTGTAA+TGG + chr3_4:76171354-76171373 Msa0522850:three_prime_UTR 20.0%
!!! GATTCGTATTCTTATTTTAT+AGG + chr3_4:76171536-76171555 Msa0522850:three_prime_UTR 20.0%
! AGTATCAATCAAATTAGTGA+GGG - chr3_4:76167491-76167510 None:intergenic 25.0%
! GAATTCAAGATTAATTTCAC+CGG - chr3_4:76167583-76167602 None:intergenic 25.0%
! ATCATCCATATTTACAATAG+CGG - chr3_4:76168306-76168325 None:intergenic 25.0%
! TTATTCATAGGATCCATAAT+TGG - chr3_4:76168683-76168702 None:intergenic 25.0%
!! TAGTGTACTGTAAAAGTTTT+AGG + chr3_4:76168941-76168960 Msa0522850:intron 25.0%
!!! TAATCCTTTTAGGTAATTCA+AGG + chr3_4:76169010-76169029 Msa0522850:intron 25.0%
! GAAAATGTAGTAACAGAATT+TGG + chr3_4:76169042-76169061 Msa0522850:intron 25.0%
!!! ACAACTTTTTAATTCTCTCT+AGG + chr3_4:76169118-76169137 Msa0522850:intron 25.0%
! AAGTGCAATAAAGATAACAA+AGG - chr3_4:76169176-76169195 None:intergenic 25.0%
! AGATATGAACTTTCATCTTA+CGG + chr3_4:76169217-76169236 Msa0522850:intron 25.0%
! AGGAAAGAAAAGAAAGAATA+CGG - chr3_4:76169249-76169268 None:intergenic 25.0%
! CAGTATTAGAAATAATGTCA+TGG + chr3_4:76169400-76169419 Msa0522850:intron 25.0%
! GAGTATATATTGCATATTCT+AGG + chr3_4:76169465-76169484 Msa0522850:intron 25.0%
!! ATGCTTTTCTATATGAATCT+TGG - chr3_4:76169556-76169575 None:intergenic 25.0%
! TTACCATATTCATCTTGTTA+GGG + chr3_4:76169772-76169791 Msa0522850:intron 25.0%
! CTGTGAAAGAAAAAAATTTG+TGG + chr3_4:76170021-76170040 Msa0522850:intron 25.0%
!! TTTTTACATTACAAGTCTAG+TGG + chr3_4:76170103-76170122 Msa0522850:intron 25.0%
! AACTTGCACAATTAACAAAT+AGG - chr3_4:76170141-76170160 None:intergenic 25.0%
!! TTGTCCCTTTAAATTTTTCA+AGG + chr3_4:76170189-76170208 Msa0522850:intron 25.0%
! GATGCCTTGAAAAATTTAAA+GGG - chr3_4:76170196-76170215 None:intergenic 25.0%
! AGATGCCTTGAAAAATTTAA+AGG - chr3_4:76170197-76170216 None:intergenic 25.0%
!! AATAGTCGATTTCCAAAATA+TGG - chr3_4:76170456-76170475 None:intergenic 25.0%
! GACAAAATAATCTCTAATAC+GGG - chr3_4:76170664-76170683 None:intergenic 25.0%
! AATTATTGTTTCATTTGTCC+GGG + chr3_4:76170897-76170916 Msa0522850:intron 25.0%
TTTAAACAAAACTGGGTGTA+CGG - chr3_4:76167401-76167420 None:intergenic 30.0%
GTGGTACTTTAAACAAAACT+GGG - chr3_4:76167408-76167427 None:intergenic 30.0%
TGTGGTACTTTAAACAAAAC+TGG - chr3_4:76167409-76167428 None:intergenic 30.0%
GAAGAATAATGTGATTGTAG+AGG - chr3_4:76167463-76167482 None:intergenic 30.0%
GTATCAATCAAATTAGTGAG+GGG - chr3_4:76167490-76167509 None:intergenic 30.0%
CAGTATCAATCAAATTAGTG+AGG - chr3_4:76167492-76167511 None:intergenic 30.0%
! TACAATTTTCGGAACAATTG+AGG - chr3_4:76167931-76167950 None:intergenic 30.0%
AGCTAGTTATCTTCATGATT+TGG + chr3_4:76168247-76168266 Msa0522850:CDS 30.0%
TGATTCCGCTATTGTAAATA+TGG + chr3_4:76168298-76168317 Msa0522850:CDS 30.0%
ACTATGCTTACTATGGTTAA+TGG + chr3_4:76168338-76168357 Msa0522850:CDS 30.0%
CTATGCTTACTATGGTTAAT+GGG + chr3_4:76168339-76168358 Msa0522850:CDS 30.0%
TTGCTTAAGATTGCATATGT+TGG + chr3_4:76168807-76168826 Msa0522850:intron 30.0%
! TATTGACTACTATGCCTAAA+TGG - chr3_4:76168905-76168924 None:intergenic 30.0%
! GTGAAATATATCCTGTTTTC+AGG + chr3_4:76168981-76169000 Msa0522850:intron 30.0%
AATGCCTTGAATTACCTAAA+AGG - chr3_4:76169017-76169036 None:intergenic 30.0%
! GAAACAAGTGAATGTAGTTT+TGG + chr3_4:76169082-76169101 Msa0522850:intron 30.0%
AGATGAAAGTTCATATCTTG+AGG - chr3_4:76169215-76169234 None:intergenic 30.0%
GATATGAACTTTCATCTTAC+GGG + chr3_4:76169218-76169237 Msa0522850:intron 30.0%
!! TAATGTCATGGCTTTTGAAA+TGG + chr3_4:76169412-76169431 Msa0522850:intron 30.0%
!!! AATGTCATGGCTTTTGAAAT+GGG + chr3_4:76169413-76169432 Msa0522850:intron 30.0%
TGTGTAGATTTAATGAAGTG+AGG + chr3_4:76169527-76169546 Msa0522850:intron 30.0%
GTGCAATGAATCATAACTTA+TGG + chr3_4:76169605-76169624 Msa0522850:intron 30.0%
GAATACATGGCTTATAACTT+AGG + chr3_4:76169685-76169704 Msa0522850:intron 30.0%
CTTACCATATTCATCTTGTT+AGG + chr3_4:76169771-76169790 Msa0522850:intron 30.0%
CATGTAATAATTGTGTGCAA+AGG - chr3_4:76169813-76169832 None:intergenic 30.0%
ATTTGTGGTTGCAAGTTAAA+AGG + chr3_4:76170036-76170055 Msa0522850:intron 30.0%
!!! CGTCTTTGTTTTGCTTTATT+CGG + chr3_4:76170269-76170288 Msa0522850:intron 30.0%
GAACAAATAGACTACTGAAA+AGG - chr3_4:76170304-76170323 None:intergenic 30.0%
TGTGAAATCCCAAAAAACAA+AGG - chr3_4:76170422-76170441 None:intergenic 30.0%
CAGTCTCTTAAGTTATAGTT+TGG + chr3_4:76170476-76170495 Msa0522850:intron 30.0%
TCTCTTAAGTTATAGTTTGG+CGG + chr3_4:76170479-76170498 Msa0522850:intron 30.0%
!! AGATTATTTTGTCAGTAGCA+TGG + chr3_4:76170671-76170690 Msa0522850:intron 30.0%
AGTTAGGACAACAATTCTTA+AGG - chr3_4:76170703-76170722 None:intergenic 30.0%
GCAAAGTTTAGTTACTTAGA+AGG + chr3_4:76170936-76170955 Msa0522850:intron 30.0%
AAGTTTAGTTACTTAGAAGG+AGG + chr3_4:76170939-76170958 Msa0522850:intron 30.0%
CTATCCTTAAGTATGCATAA+CGG - chr3_4:76171227-76171246 None:intergenic 30.0%
AACCTGTGCAAGATTAATAA+AGG + chr3_4:76171312-76171331 Msa0522850:three_prime_UTR 30.0%
TATTTGCCAATTGTAATGGT+CGG + chr3_4:76171358-76171377 Msa0522850:three_prime_UTR 30.0%
AAGGACTCACATTAGATATA+AGG - chr3_4:76171446-76171465 None:intergenic 30.0%
CCAAATTCTATCTATGCAAA+GGG - chr3_4:76171495-76171514 None:intergenic 30.0%
TCCAAATTCTATCTATGCAA+AGG - chr3_4:76171496-76171515 None:intergenic 30.0%
TTGGATGTCAATATAAATGC+TGG + chr3_4:76171511-76171530 Msa0522850:three_prime_UTR 30.0%
AATCAAATTAGTGAGGGGAT+GGG - chr3_4:76167485-76167504 None:intergenic 35.0%
TGAATTCAATCCCTCACATA+TGG + chr3_4:76167596-76167615 Msa0522850:exon 35.0%
GAATTCAATCCCTCACATAT+GGG + chr3_4:76167597-76167616 Msa0522850:exon 35.0%
TTGTTCCGAAAATTGTAGCT+AGG + chr3_4:76167934-76167953 Msa0522850:CDS 35.0%
! AGTGACCTAGCTACAATTTT+CGG - chr3_4:76167942-76167961 None:intergenic 35.0%
TGGAAATTATCAAACGTAGG+TGG - chr3_4:76168050-76168069 None:intergenic 35.0%
GTCTGGAAATTATCAAACGT+AGG - chr3_4:76168053-76168072 None:intergenic 35.0%
TTGTTGGTACAAGATACTAC+GGG - chr3_4:76168093-76168112 None:intergenic 35.0%
GTTGTTGGTACAAGATACTA+CGG - chr3_4:76168094-76168113 None:intergenic 35.0%
! GTTATCTTCATGATTTGGCT+AGG + chr3_4:76168252-76168271 Msa0522850:CDS 35.0%
! GCTTTTCACTATGCTTACTA+TGG + chr3_4:76168331-76168350 Msa0522850:CDS 35.0%
CTTACTATGGTTAATGGGAT+TGG + chr3_4:76168344-76168363 Msa0522850:CDS 35.0%
TCATTAATCGGAAGAACATC+AGG - chr3_4:76168413-76168432 None:intergenic 35.0%
GTTCTTCCGATTAATGATCT+TGG + chr3_4:76168416-76168435 Msa0522850:CDS 35.0%
CGAACACCAAGATCATTAAT+CGG - chr3_4:76168425-76168444 None:intergenic 35.0%
!! CGATTAATGATCTTGGTGTT+CGG + chr3_4:76168423-76168442 Msa0522850:CDS 35.0%
! ATAATCTAGATGACTTGCCT+CGG + chr3_4:76168465-76168484 Msa0522850:CDS 35.0%
CATAATTGATCCATCTGAGA+TGG - chr3_4:76168491-76168510 None:intergenic 35.0%
TGGATCAATTATGTGAGAAG+TGG + chr3_4:76168498-76168517 Msa0522850:CDS 35.0%
GCATTCACAACAACCAATTA+TGG + chr3_4:76168667-76168686 Msa0522850:CDS 35.0%
!! GCATATGTTGGTGATAATGA+TGG + chr3_4:76168819-76168838 Msa0522850:CDS 35.0%
!! CATGTGTTAGTCTTCCATTT+AGG + chr3_4:76168888-76168907 Msa0522850:intron 35.0%
TAGTCAATAGCATGCTATAG+CGG + chr3_4:76168916-76168935 Msa0522850:intron 35.0%
AATCATGAATGACAGCCATT+AGG - chr3_4:76169300-76169319 None:intergenic 35.0%
!!! ATGTCATGGCTTTTGAAATG+GGG + chr3_4:76169414-76169433 Msa0522850:intron 35.0%
TAACTTATGGCATACAATCG+AGG + chr3_4:76169618-76169637 Msa0522850:intron 35.0%
AATATGGAGCTGTGAATACA+TGG + chr3_4:76169672-76169691 Msa0522850:intron 35.0%
CATCCCTAACAAGATGAATA+TGG - chr3_4:76169778-76169797 None:intergenic 35.0%
ATTCTTGCCAGAAAGATTCT+AGG + chr3_4:76169847-76169866 Msa0522850:intron 35.0%
ATTACAGCCTAGAATCTTTC+TGG - chr3_4:76169857-76169876 None:intergenic 35.0%
ATGTACATTATGTTTCCCTG+AGG + chr3_4:76169875-76169894 Msa0522850:intron 35.0%
GGTTGCAAGTTAAAAGGATT+TGG + chr3_4:76170042-76170061 Msa0522850:intron 35.0%
AAGGGACAAAAAGTTAACTC+AGG - chr3_4:76170178-76170197 None:intergenic 35.0%
! TCTGATTTGATCATTGACCT+TGG + chr3_4:76170350-76170369 Msa0522850:intron 35.0%
TTGATCATTGACCTTGGTAT+TGG + chr3_4:76170356-76170375 Msa0522850:intron 35.0%
TGATCATTGACCTTGGTATT+GGG + chr3_4:76170357-76170376 Msa0522850:intron 35.0%
AAAAGATGTACCCAATACCA+AGG - chr3_4:76170370-76170389 None:intergenic 35.0%
!!! TTGCGTGACCTTTGTTTTTT+GGG + chr3_4:76170411-76170430 Msa0522850:intron 35.0%
!! CTTTCTTCTGTTGGTTGTTT+TGG + chr3_4:76170759-76170778 Msa0522850:intron 35.0%
! TGTCTGTTTGCTTTGGATTA+TGG + chr3_4:76170827-76170846 Msa0522850:intron 35.0%
ATGGTTTATGCCATAGTATG+TGG + chr3_4:76170846-76170865 Msa0522850:intron 35.0%
TTTAGTTACTTAGAAGGAGG+AGG + chr3_4:76170942-76170961 Msa0522850:intron 35.0%
TTAGTTACTTAGAAGGAGGA+GGG + chr3_4:76170943-76170962 Msa0522850:intron 35.0%
AAGATCGAGAACAGAAACAA+AGG - chr3_4:76171014-76171033 None:intergenic 35.0%
! CACAGGTTTTACTAAACACA+AGG - chr3_4:76171300-76171319 None:intergenic 35.0%
AGCCTTTATTAATCTTGCAC+AGG - chr3_4:76171317-76171336 None:intergenic 35.0%
TGGACATGACAACTTGAAAT+TGG - chr3_4:76171387-76171406 None:intergenic 35.0%
CCCTTTGCATAGATAGAATT+TGG + chr3_4:76171492-76171511 Msa0522850:three_prime_UTR 35.0%
CAATCAAATTAGTGAGGGGA+TGG - chr3_4:76167486-76167505 None:intergenic 40.0%
! AATTTCACCGGTTACCGATA+GGG - chr3_4:76167571-76167590 None:intergenic 40.0%
! TAATTTCACCGGTTACCGAT+AGG - chr3_4:76167572-76167591 None:intergenic 40.0%
TACGGGGATAATAGTTTCGA+CGG - chr3_4:76167706-76167725 None:intergenic 40.0%
ATTGCTCAGTTCGGATTCTA+CGG - chr3_4:76167724-76167743 None:intergenic 40.0%
TGATGGAACATTGCTCAGTT+CGG - chr3_4:76167733-76167752 None:intergenic 40.0%
ATTGAGATTCGGAGGTTGTT+GGG - chr3_4:76167821-76167840 None:intergenic 40.0%
AACAACCTCCGAATCTCAAT+CGG + chr3_4:76167821-76167840 Msa0522850:CDS 40.0%
TAGGGTTTCCGATTGAGATT+CGG - chr3_4:76167832-76167851 None:intergenic 40.0%
ACAATTGAGGTTCGTTGTTG+TGG - chr3_4:76167918-76167937 None:intergenic 40.0%
! GTACAAGATACTACGGGTTA+GGG - chr3_4:76168087-76168106 None:intergenic 40.0%
!!! CAACAACTCGCTTTTAAAGC+CGG + chr3_4:76168107-76168126 Msa0522850:CDS 40.0%
AGCAATAAACCGGGTATAGA+TGG - chr3_4:76168138-76168157 None:intergenic 40.0%
GTTAGGGCAAGAACATTATC+AGG - chr3_4:76168188-76168207 None:intergenic 40.0%
CTCAACAGCTTCGTCAAATT+GGG + chr3_4:76168210-76168229 Msa0522850:CDS 40.0%
TCAACAGCTTCGTCAAATTG+GGG + chr3_4:76168211-76168230 Msa0522850:CDS 40.0%
!! TTGGCTAGGAAGTATCAGAA+TGG + chr3_4:76168266-76168285 Msa0522850:CDS 40.0%
!! TGGCTAGGAAGTATCAGAAT+GGG + chr3_4:76168267-76168286 Msa0522850:CDS 40.0%
!! TGGTTAATGGGATTGGTTCT+TGG + chr3_4:76168351-76168370 Msa0522850:CDS 40.0%
!! AATGATCTTGGTGTTCGGAA+AGG + chr3_4:76168428-76168447 Msa0522850:CDS 40.0%
!! ATGATCTTGGTGTTCGGAAA+GGG + chr3_4:76168429-76168448 Msa0522850:CDS 40.0%
TTGCTTCATGGTATATGTGG+AGG + chr3_4:76168537-76168556 Msa0522850:CDS 40.0%
GATTATGAGCACCTGAAAAC+AGG - chr3_4:76168995-76169014 None:intergenic 40.0%
! CAGGTGCTCATAATCCTTTT+AGG + chr3_4:76169000-76169019 Msa0522850:intron 40.0%
GTGAAAGCTTACTTCGTCAA+AGG - chr3_4:76169269-76169288 None:intergenic 40.0%
CTTTCACGAATCACACCTAA+TGG + chr3_4:76169282-76169301 Msa0522850:intron 40.0%
!!! TGTCATGGCTTTTGAAATGG+GGG + chr3_4:76169415-76169434 Msa0522850:intron 40.0%
CTACACACTAGTAATGCAAC+AGG - chr3_4:76169514-76169533 None:intergenic 40.0%
TCTCACATCTTCATTCCTCA+GGG - chr3_4:76169893-76169912 None:intergenic 40.0%
TTCTCACATCTTCATTCCTC+AGG - chr3_4:76169894-76169913 None:intergenic 40.0%
AATTGTGCAAGTTACGCTCT+AGG + chr3_4:76170148-76170167 Msa0522850:intron 40.0%
ATTGTTGAGACGAACTAAGC+TGG + chr3_4:76170230-76170249 Msa0522850:intron 40.0%
!!! GTTGCGTGACCTTTGTTTTT+TGG + chr3_4:76170410-76170429 Msa0522850:intron 40.0%
TAGTTTGGCGGTCTAGTAAT+TGG + chr3_4:76170491-76170510 Msa0522850:intron 40.0%
! ATGCCTTCAATCTGAAGTGT+CGG - chr3_4:76170545-76170564 None:intergenic 40.0%
ACTGGGCTACATTAGAGAAA+CGG - chr3_4:76170620-76170639 None:intergenic 40.0%
CATGCTTAGCTTCACAAACT+GGG - chr3_4:76170637-76170656 None:intergenic 40.0%
TCATGCTTAGCTTCACAAAC+TGG - chr3_4:76170638-76170657 None:intergenic 40.0%
CGTGAAGTTCTTTCTTCTGT+TGG + chr3_4:76170750-76170769 Msa0522850:intron 40.0%
TGCCATAGTATGTGGTTCAA+TGG + chr3_4:76170854-76170873 Msa0522850:intron 40.0%
CACCATTGAACCACATACTA+TGG - chr3_4:76170859-76170878 None:intergenic 40.0%
TAGTTACTTAGAAGGAGGAG+GGG + chr3_4:76170944-76170963 Msa0522850:intron 40.0%
GTTTCTGTTCTCGATCTTCT+TGG + chr3_4:76171016-76171035 Msa0522850:intron 40.0%
TGTCTCATTCTGATGCTTGT+AGG + chr3_4:76171104-76171123 Msa0522850:intron 40.0%
GTCTCATTCTGATGCTTGTA+GGG + chr3_4:76171105-76171124 Msa0522850:intron 40.0%
CTTAAGTATGCATAACGGCA+TGG - chr3_4:76171222-76171241 None:intergenic 40.0%
CATGCCGTTATGCATACTTA+AGG + chr3_4:76171220-76171239 Msa0522850:CDS 40.0%
! TTGGTACTGTGGTTTGGAAT+TGG + chr3_4:76171418-76171437 Msa0522850:three_prime_UTR 40.0%
! TGGTACTGTGGTTTGGAATT+GGG + chr3_4:76171419-76171438 Msa0522850:three_prime_UTR 40.0%
AAGCAAGATGAGACTCACTG+TGG - chr3_4:76167427-76167446 None:intergenic 45.0%
CTTTCTCCTCCTAACCCTAT+CGG + chr3_4:76167554-76167573 Msa0522850:five_prime_UTR 45.0%
TTGCTCAGTTCGGATTCTAC+GGG - chr3_4:76167723-76167742 None:intergenic 45.0%
GATTGAGATTCGGAGGTTGT+TGG - chr3_4:76167822-76167841 None:intergenic 45.0%
!! GGTGGAATTGGTTGGCTTTA+GGG - chr3_4:76167850-76167869 None:intergenic 45.0%
!! TGGTGGAATTGGTTGGCTTT+AGG - chr3_4:76167851-76167870 None:intergenic 45.0%
CAACGGACGGAACAACAAAA+CGG + chr3_4:76167884-76167903 Msa0522850:CDS 45.0%
ATTGAGGTTCGTTGTTGTGG+TGG - chr3_4:76167915-76167934 None:intergenic 45.0%
CGATGAGAGGTGATAAGAGT+GGG - chr3_4:76168016-76168035 None:intergenic 45.0%
TCGATGAGAGGTGATAAGAG+TGG - chr3_4:76168017-76168036 None:intergenic 45.0%
!! GGTTGATGAATGTCGATGAG+AGG - chr3_4:76168029-76168048 None:intergenic 45.0%
GGTACAAGATACTACGGGTT+AGG - chr3_4:76168088-76168107 None:intergenic 45.0%
!! CGGCTTTAAAAGCGAGTTGT+TGG - chr3_4:76168109-76168128 None:intergenic 45.0%
ACCCGGTTTATTGCTCTATG+CGG + chr3_4:76168143-76168162 Msa0522850:CDS 45.0%
ACGAAGCTGTTGAGCAGTTA+GGG - chr3_4:76168204-76168223 None:intergenic 45.0%
GCTCAACAGCTTCGTCAAAT+TGG + chr3_4:76168209-76168228 Msa0522850:CDS 45.0%
CTTCGTCAAATTGGGGTTTC+TGG + chr3_4:76168218-76168237 Msa0522850:CDS 45.0%
!! TGATCTTGGTGTTCGGAAAG+GGG + chr3_4:76168430-76168449 Msa0522850:CDS 45.0%
! GAAGTGGAAGCCTTATCGTT+CGG + chr3_4:76168514-76168533 Msa0522850:CDS 45.0%
CATGAAGCAACCGAACGATA+AGG - chr3_4:76168527-76168546 None:intergenic 45.0%
CTTATCGTTCGGTTGCTTCA+TGG + chr3_4:76168525-76168544 Msa0522850:CDS 45.0%
CGGTTGCTTCATGGTATATG+TGG + chr3_4:76168534-76168553 Msa0522850:CDS 45.0%
!! TGGAGGTTTGTTGAAGCGAA+GGG + chr3_4:76168554-76168573 Msa0522850:CDS 45.0%
! TTTGAAATGGGGGATCAACC+AGG + chr3_4:76169425-76169444 Msa0522850:intron 45.0%
TTGAAATGGGGGATCAACCA+GGG + chr3_4:76169426-76169445 Msa0522850:intron 45.0%
GTGCATATAGAAATACGCGC+AGG - chr3_4:76170523-76170542 None:intergenic 45.0%
TCTCAGCTGTCTGTTTGCTT+TGG + chr3_4:76170820-76170839 Msa0522850:intron 45.0%
GGAGGGGTTTGTGAATTCAT+TGG + chr3_4:76170960-76170979 Msa0522850:intron 45.0%
TCTGTTCTCGATCTTCTTGG+AGG + chr3_4:76171019-76171038 Msa0522850:intron 45.0%
TTGCCAATTGTAATGGTCGG+AGG + chr3_4:76171361-76171380 Msa0522850:three_prime_UTR 45.0%
! CATGTCCATCTTTTACCGCT+TGG + chr3_4:76171399-76171418 Msa0522850:three_prime_UTR 45.0%
CAGTACCAAGCGGTAAAAGA+TGG - chr3_4:76171407-76171426 None:intergenic 45.0%
! TCTTTTACCGCTTGGTACTG+TGG + chr3_4:76171407-76171426 Msa0522850:three_prime_UTR 45.0%
TTCCAAACCACAGTACCAAG+CGG - chr3_4:76171417-76171436 None:intergenic 45.0%
TTTCACGTCGTGTTAGCGAA+TGG + chr3_4:76171467-76171486 Msa0522850:three_prime_UTR 45.0%
TTCACGTCGTGTTAGCGAAT+GGG + chr3_4:76171468-76171487 Msa0522850:three_prime_UTR 45.0%
CTCCTAACCCTATCGGTAAC+CGG + chr3_4:76167561-76167580 Msa0522850:five_prime_UTR 50.0%
GTGTCTTCGCCCATATGTGA+GGG - chr3_4:76167609-76167628 None:intergenic 50.0%
TGTGTCTTCGCCCATATGTG+AGG - chr3_4:76167610-76167629 None:intergenic 50.0%
AACCTCAGCCACAACCACAA+GGG + chr3_4:76167637-76167656 Msa0522850:CDS 50.0%
GAAGAAACCCCTTGTGGTTG+TGG - chr3_4:76167648-76167667 None:intergenic 50.0%
TTGTCGGAAGAAACCCCTTG+TGG - chr3_4:76167654-76167673 None:intergenic 50.0%
TGCTCAGTTCGGATTCTACG+GGG - chr3_4:76167722-76167741 None:intergenic 50.0%
CCTTTCGGATCTTACGAGGA+CGG - chr3_4:76167788-76167807 None:intergenic 50.0%
GAGACCTTTCGGATCTTACG+AGG - chr3_4:76167792-76167811 None:intergenic 50.0%
AGATTCGGAGGTTGTTGGGT+CGG - chr3_4:76167817-76167836 None:intergenic 50.0%
GGTTTCCGATTGAGATTCGG+AGG - chr3_4:76167829-76167848 None:intergenic 50.0%
! GTTCCGTCCGTTGGATTTTC+CGG - chr3_4:76167877-76167896 None:intergenic 50.0%
!!! CGTTTTGTTGTTCCGTCCGT+TGG - chr3_4:76167886-76167905 None:intergenic 50.0%
GTGCGAAGGTGAAGTTGAGA+TGG + chr3_4:76167965-76167984 Msa0522850:CDS 50.0%
AGGTGATAAGAGTGGGTCTG+CGG - chr3_4:76168009-76168028 None:intergenic 50.0%
TTAGGGCAAGGAATGGAGTC+TGG - chr3_4:76168070-76168089 None:intergenic 50.0%
!! AGATACTACGGGTTAGGGCA+AGG - chr3_4:76168082-76168101 None:intergenic 50.0%
! CCGGGTATAGATGGAAGTAC+CGG - chr3_4:76168129-76168148 None:intergenic 50.0%
CCGGTACTTCCATCTATACC+CGG + chr3_4:76168126-76168145 Msa0522850:CDS 50.0%
GCCGCATAGAGCAATAAACC+GGG - chr3_4:76168147-76168166 None:intergenic 50.0%
CGCCGCATAGAGCAATAAAC+CGG - chr3_4:76168148-76168167 None:intergenic 50.0%
CGGTTTATTGCTCTATGCGG+CGG + chr3_4:76168146-76168165 Msa0522850:CDS 50.0%
GACGAAGCTGTTGAGCAGTT+AGG - chr3_4:76168205-76168224 None:intergenic 50.0%
!! GTGGAGGTTTGTTGAAGCGA+AGG + chr3_4:76168553-76168572 Msa0522850:CDS 50.0%
CATGACTCAAGAGATGTCCC+TGG - chr3_4:76169446-76169465 None:intergenic 50.0%
!! GTGCAAGTTACGCTCTAGGA+TGG + chr3_4:76170152-76170171 Msa0522850:intron 50.0%
! GCACCGACACTTCAGATTGA+AGG + chr3_4:76170539-76170558 Msa0522850:intron 50.0%
TGGCCTCCGACCATTACAAT+TGG - chr3_4:76171367-76171386 None:intergenic 50.0%
TACCGCTTGGTACTGTGGTT+TGG + chr3_4:76171412-76171431 Msa0522850:three_prime_UTR 50.0%
CGCTAACACGACGTGAAACA+AGG - chr3_4:76171465-76171484 None:intergenic 50.0%
CGGTTACCGATAGGGTTAGG+AGG - chr3_4:76167563-76167582 None:intergenic 55.0%
! CACCGGTTACCGATAGGGTT+AGG - chr3_4:76167566-76167585 None:intergenic 55.0%
CAACCTCAGCCACAACCACA+AGG + chr3_4:76167636-76167655 Msa0522850:CDS 55.0%
ACCTCAGCCACAACCACAAG+GGG + chr3_4:76167638-76167657 Msa0522850:CDS 55.0%
!! GGTGGCGGAGATTGTGTTGT+CGG - chr3_4:76167670-76167689 None:intergenic 55.0%
AGTTTCGACGGAGTCGACAG+CGG - chr3_4:76167694-76167713 None:intergenic 55.0%
!!! ACGGAGGGGCATTTTTGTGG+CGG - chr3_4:76167769-76167788 None:intergenic 55.0%
!!! AGGACGGAGGGGCATTTTTG+TGG - chr3_4:76167772-76167791 None:intergenic 55.0%
TCGGATCTTACGAGGACGGA+GGG - chr3_4:76167784-76167803 None:intergenic 55.0%
TTCGGATCTTACGAGGACGG+AGG - chr3_4:76167785-76167804 None:intergenic 55.0%
CCGTCCTCGTAAGATCCGAA+AGG + chr3_4:76167785-76167804 Msa0522850:CDS 55.0%
TTGGGTCGGGTGAGACCTTT+CGG - chr3_4:76167803-76167822 None:intergenic 55.0%
GATTCGGAGGTTGTTGGGTC+GGG - chr3_4:76167816-76167835 None:intergenic 55.0%
!!! TTTTCCGGCGGTGGTGGAAT+TGG - chr3_4:76167862-76167881 None:intergenic 55.0%
ACCACCGCCGGAAAATCCAA+CGG + chr3_4:76167867-76167886 Msa0522850:CDS 55.0%
! GCTAGGTCACTTTCGTGCGA+AGG + chr3_4:76167951-76167970 Msa0522850:CDS 55.0%
!! CTACGGGTTAGGGCAAGGAA+TGG - chr3_4:76168077-76168096 None:intergenic 55.0%
! TGATCCATCTGAGATGGCCG+AGG - chr3_4:76168485-76168504 None:intergenic 55.0%
GCAACAGCAGCAGCAGTTGA+AGG - chr3_4:76168584-76168603 None:intergenic 55.0%
TTGTAGGGCTGCCTGTGCTT+GGG + chr3_4:76171120-76171139 Msa0522850:intron 55.0%
CTATCACTGTCCCCAAGCAC+AGG - chr3_4:76171134-76171153 None:intergenic 55.0%
ACCCCTTGTGGTTGTGGCTG+AGG - chr3_4:76167642-76167661 None:intergenic 60.0%
!! CATTTTTGTGGCGGGGGCGT+TGG - chr3_4:76167760-76167779 None:intergenic 60.0%
!!! GAGGGGCATTTTTGTGGCGG+GGG - chr3_4:76167766-76167785 None:intergenic 60.0%
!!! GGAGGGGCATTTTTGTGGCG+GGG - chr3_4:76167767-76167786 None:intergenic 60.0%
!!! CGGAGGGGCATTTTTGTGGC+GGG - chr3_4:76167768-76167787 None:intergenic 60.0%
CGGATCTTACGAGGACGGAG+GGG - chr3_4:76167783-76167802 None:intergenic 60.0%
CCAACCAATTCCACCACCGC+CGG + chr3_4:76167855-76167874 Msa0522850:CDS 60.0%
! GTTGGATTTTCCGGCGGTGG+TGG - chr3_4:76167868-76167887 None:intergenic 60.0%
! TCCGTTGGATTTTCCGGCGG+TGG - chr3_4:76167871-76167890 None:intergenic 60.0%
! CCGTCCGTTGGATTTTCCGG+CGG - chr3_4:76167874-76167893 None:intergenic 60.0%
CCGCCGGAAAATCCAACGGA+CGG + chr3_4:76167871-76167890 Msa0522850:CDS 60.0%
AGAGTGGGTCTGCGGTACGA+AGG - chr3_4:76168001-76168020 None:intergenic 60.0%
CTTGCCTCGGCCATCTCAGA+TGG + chr3_4:76168478-76168497 Msa0522850:CDS 60.0%
ACTGCTGCTGCTGTTGCCAC+TGG + chr3_4:76168587-76168606 Msa0522850:CDS 60.0%
GCTGCTGTTGCCACTGGCAA+TGG + chr3_4:76168593-76168612 Msa0522850:CDS 60.0%
CTGCTGCAAGCCATTGCCAG+TGG - chr3_4:76168606-76168625 None:intergenic 60.0%
! TGGCTTGCAGCAGCATGAGC+TGG + chr3_4:76168613-76168632 Msa0522850:CDS 60.0%
! GCTGCTGCTGCTGTTGATGG+TGG - chr3_4:76168640-76168659 None:intergenic 60.0%
GCTGCTGCTGCTGCTGTTGA+TGG - chr3_4:76168643-76168662 None:intergenic 60.0%
CTTGTAGGGCTGCCTGTGCT+TGG + chr3_4:76171119-76171138 Msa0522850:intron 60.0%
TGTAGGGCTGCCTGTGCTTG+GGG + chr3_4:76171121-76171140 Msa0522850:intron 60.0%
TTCGACGGAGTCGACAGCGG+TGG - chr3_4:76167691-76167710 None:intergenic 65.0%
!! CCGGCGGTGGTGGAATTGGT+TGG - chr3_4:76167858-76167877 None:intergenic 65.0%
GCTCTATGCGGCGGTGAAGC+TGG + chr3_4:76168155-76168174 Msa0522850:CDS 65.0%
! GGAGTCGACAGCGGTGGTGG+CGG - chr3_4:76167685-76167704 None:intergenic 70.0%
GACGGAGTCGACAGCGGTGG+TGG - chr3_4:76167688-76167707 None:intergenic 70.0%
!! GCGGGGGCGTTGGTGCGTGA+TGG - chr3_4:76167750-76167769 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76167378 76171589 76167378 ID=Msa0522850;Name=Msa0522850
chr3_4 mRNA 76167378 76171589 76167378 ID=Msa0522850-mRNA-1;Parent=Msa0522850;Name=Msa0522850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|0.33|0.75|0.75|0|0.25|4|323|429
chr3_4 exon 76167378 76167428 76167378 ID=Msa0522850-mRNA-1:exon:21915;Parent=Msa0522850-mRNA-1
chr3_4 exon 76167546 76168717 76167546 ID=Msa0522850-mRNA-1:exon:21916;Parent=Msa0522850-mRNA-1
chr3_4 exon 76168816 76168861 76168816 ID=Msa0522850-mRNA-1:exon:21917;Parent=Msa0522850-mRNA-1
chr3_4 exon 76171126 76171589 76171126 ID=Msa0522850-mRNA-1:exon:21918;Parent=Msa0522850-mRNA-1
chr3_4 five_prime_UTR 76167378 76167428 76167378 ID=Msa0522850-mRNA-1:five_prime_utr;Parent=Msa0522850-mRNA-1
chr3_4 five_prime_UTR 76167546 76167614 76167546 ID=Msa0522850-mRNA-1:five_prime_utr;Parent=Msa0522850-mRNA-1
chr3_4 CDS 76167615 76168717 76167615 ID=Msa0522850-mRNA-1:cds;Parent=Msa0522850-mRNA-1
chr3_4 CDS 76168816 76168861 76168816 ID=Msa0522850-mRNA-1:cds;Parent=Msa0522850-mRNA-1
chr3_4 CDS 76171126 76171266 76171126 ID=Msa0522850-mRNA-1:cds;Parent=Msa0522850-mRNA-1
chr3_4 three_prime_UTR 76171267 76171589 76171267 ID=Msa0522850-mRNA-1:three_prime_utr;Parent=Msa0522850-mRNA-1
Gene Sequence

>Msa0522850

ATGGGCGAAGACACACAACAACAACCTCAGCCACAACCACAAGGGGTTTCTTCCGACAACACAATCTCCGCCACCACCGCTGTCGACTCCGTCGAAACTATTATCCCCGTAGAATCCGAACTGAGCAATGTTCCATCACGCACCAACGCCCCCGCCACAAAAATGCCCCTCCGTCCTCGTAAGATCCGAAAGGTCTCACCCGACCCAACAACCTCCGAATCTCAATCGGAAACCCTAAAGCCAACCAATTCCACCACCGCCGGAAAATCCAACGGACGGAACAACAAAACGGTTCAACCACCACAACAACGAACCTCAATTGTTCCGAAAATTGTAGCTAGGTCACTTTCGTGCGAAGGTGAAGTTGAGATGGCAATTCGTTACCTTCGTACCGCAGACCCACTCTTATCACCTCTCATCGACATTCATCAACCACCTACGTTTGATAATTTCCAGACTCCATTCCTTGCCCTAACCCGTAGTATCTTGTACCAACAACTCGCTTTTAAAGCCGGTACTTCCATCTATACCCGGTTTATTGCTCTATGCGGCGGTGAAGCTGGTGTTGTTCCTGATAATGTTCTTGCCCTAACTGCTCAACAGCTTCGTCAAATTGGGGTTTCTGGTAGAAAAGCTAGTTATCTTCATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCTATTGTAAATATGGATGATAAATCGCTTTTCACTATGCTTACTATGGTTAATGGGATTGGTTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTGCATAGACCTGATGTTCTTCCGATTAATGATCTTGGTGTTCGGAAAGGGGTTCAGATTCTTTATAATCTAGATGACTTGCCTCGGCCATCTCAGATGGATCAATTATGTGAGAAGTGGAAGCCTTATCGTTCGGTTGCTTCATGGTATATGTGGAGGTTTGTTGAAGCGAAGGGAAGTCCTTCAACTGCTGCTGCTGTTGCCACTGGCAATGGCTTGCAGCAGCATGAGCTGGACCACCATCAACAGCAGCAGCAGCAGCAGCAGCATTCACAACAACCAATTATGGATCCTATGAATAACATGTTTAATATGGGATTGCATATGTTGGTGATAATGATGGCTATCTACAACAGCGATCAAGGCTGCCTGTGCTTGGGGACAGTGATAGCTGACAAATTTGAGAAAGTTGTCATCAAGCTTCGCAATCAGACACTCATACTTGACGTTGCAAAGCCATGCCGTTATGCATACTTAAGGATAGATGTTAGCACTGAAACATGA
Protein sequence

>Msa0522850

MGEDTQQQPQPQPQGVSSDNTISATTAVDSVETIIPVESELSNVPSRTNAPATKMPLRPRKIRKVSPDPTTSESQSETLKPTNSTTAGKSNGRNNKTVQPPQQRTSIVPKIVARSLSCEGEVEMAIRYLRTADPLLSPLIDIHQPPTFDNFQTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPDNVLALTAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQLCEKWKPYRSVASWYMWRFVEAKGSPSTAAAVATGNGLQQHELDHHQQQQQQQQHSQQPIMDPMNNMFNMGLHMLVIMMAIYNSDQGCLCLGTVIADKFEKVVIKLRNQTLILDVAKPCRYAYLRIDVSTET*