AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434860 MtrunA17_Chr3g0141611 92.973 370 23 1 1 367 1 370 0.0 660
Msa0434860 MtrunA17_Chr5g0404201 55.399 213 93 1 111 321 59 271 2.71e-85 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434860 AT1G75230.2 60.417 384 117 5 6 371 24 390 4.93e-145 419
Msa0434860 AT1G19480.2 61.408 355 117 6 15 367 41 377 1.12e-144 417
Msa0434860 AT1G75230.1 60.789 380 114 5 6 367 24 386 1.16e-144 417
Msa0434860 AT1G19480.1 61.690 355 116 6 15 367 41 377 1.83e-144 417
Msa0434860 AT3G50880.1 54.152 277 90 4 46 320 29 270 1.74e-98 296

Find 156 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGCATAGATAGAATT+TGG 0.148146 3_2:+87886114 Msa0434860:three_prime_UTR
GCTCAACAGCTTCGTCAAAT+TGG 0.169969 3_2:+87882834 Msa0434860:CDS
TGGTGGAATTGGTTGGCTTT+AGG 0.180405 3_2:-87882473 None:intergenic
CTTCGTCAAATTGGGGTTTC+TGG 0.192533 3_2:+87882843 Msa0434860:CDS
TGATTCCGCTATTGTAAATA+TGG 0.193076 3_2:+87882923 Msa0434860:CDS
TATGAATAACATGTTTAATA+TGG 0.206711 3_2:+87883316 Msa0434860:CDS
ACTATGCTTACTATGGTTAA+TGG 0.221809 3_2:+87882963 Msa0434860:CDS
GGTGGAATTGGTTGGCTTTA+GGG 0.224070 3_2:-87882472 None:intergenic
TGTGGTACTTTAAACAAAAC+TGG 0.240597 3_2:-87882037 None:intergenic
CTCAACAGCTTCGTCAAATT+GGG 0.256135 3_2:+87882835 Msa0434860:CDS
GCATTCACAACAACCAATTA+TGG 0.288895 3_2:+87883289 Msa0434860:CDS
GCTGCTGTTGCCACTGGCAA+TGG 0.292196 3_2:+87883218 Msa0434860:CDS
AGCTAGTTATCTTCATGATT+TGG 0.297314 3_2:+87882872 Msa0434860:CDS
TTATTCATAGGATCCATAAT+TGG 0.299949 3_2:-87883302 None:intergenic
GATGCTGCTGCTGCTGTTGA+TGG 0.303645 3_2:-87883265 None:intergenic
CTTGTAGGGCTGCCTGTGCT+TGG 0.309335 3_2:+87885741 Msa0434860:intron
CTATGCTTACTATGGTTAAT+GGG 0.309757 3_2:+87882964 Msa0434860:CDS
TGGTTAATGGGATTGGTTCT+TGG 0.310260 3_2:+87882976 Msa0434860:CDS
TTGTAGGGCTGCCTGTGCTT+GGG 0.324942 3_2:+87885742 Msa0434860:intron
TGGACATGACAACTTGAAAT+TGG 0.333635 3_2:-87886006 None:intergenic
TTGGTACTGTGGTTTGGAAT+TGG 0.334137 3_2:+87886040 Msa0434860:three_prime_UTR
TTGGGTCGGGTGAGACCTTT+CGG 0.350316 3_2:-87882425 None:intergenic
TACCGCTTGGTACTGTGGTT+TGG 0.357365 3_2:+87886034 Msa0434860:three_prime_UTR
ATATTAAACATGTTATTCAT+AGG 0.364793 3_2:-87883314 None:intergenic
CTTATCGTTCGGTTGCTTCA+TGG 0.372094 3_2:+87883150 Msa0434860:CDS
AGCAATAAACCGGGTATAGA+TGG 0.372851 3_2:-87882760 None:intergenic
ATGAATAACATGTTTAATAT+GGG 0.373528 3_2:+87883317 Msa0434860:CDS
CTTACTATGGTTAATGGGAT+TGG 0.385045 3_2:+87882969 Msa0434860:CDS
TGGTACTGTGGTTTGGAATT+GGG 0.386760 3_2:+87886041 Msa0434860:three_prime_UTR
ATTGAGATTCGGAGGTTGTT+GGG 0.390972 3_2:-87882443 None:intergenic
GGTACAAGATACTACGGGTT+AGG 0.395255 3_2:-87882710 None:intergenic
TGAATTCAATCCCTCACATA+TGG 0.399085 3_2:+87882221 Msa0434860:exon
AAGGACTCACATTAGATATA+AGG 0.399885 3_2:-87886065 None:intergenic
GATTCGGAGGTTGTTGGGTC+GGG 0.407111 3_2:-87882438 None:intergenic
TGGCTTGCAGCAGCATGAGC+TGG 0.409325 3_2:+87883238 Msa0434860:CDS
CGAACACCAAGATCATTAAT+CGG 0.413843 3_2:-87883047 None:intergenic
GTTAGGGCAAGAACATTATC+AGG 0.416123 3_2:-87882810 None:intergenic
AACCTGTGCAAGATTAATAA+AGG 0.417957 3_2:+87885934 Msa0434860:three_prime_UTR
CTCCTAACCCTATCGGTAAC+CGG 0.418716 3_2:+87882186 Msa0434860:five_prime_UTR
GACGAAGCTGTTGAGCAGTT+AGG 0.418751 3_2:-87882827 None:intergenic
ACCCCTTGTGGTTGTGGCTG+AGG 0.426942 3_2:-87882264 None:intergenic
ACGAAGCTGTTGAGCAGTTA+GGG 0.427388 3_2:-87882826 None:intergenic
CGATTAATGATCTTGGTGTT+CGG 0.428190 3_2:+87883048 Msa0434860:CDS
GTTCTTCCGATTAATGATCT+TGG 0.429181 3_2:+87883041 Msa0434860:CDS
ATGATCTTGGTGTTCGGAAA+GGG 0.431899 3_2:+87883054 Msa0434860:CDS
TAGGGTTTCCGATTGAGATT+CGG 0.437075 3_2:-87882454 None:intergenic
ACTGCTGCTGCTGTTGCCAC+TGG 0.440661 3_2:+87883212 Msa0434860:CDS
TTCACGTCGTGTTAGCGAAT+GGG 0.441456 3_2:+87886090 Msa0434860:three_prime_UTR
CACCGGTTACCGATAGGGTT+AGG 0.442756 3_2:-87882188 None:intergenic
ATTGCTCAGTTCGGATTCTA+CGG 0.445751 3_2:-87882346 None:intergenic
CCGGCGGTGGTGGAATTGGT+TGG 0.451771 3_2:-87882480 None:intergenic
GCTCTATGCGGCGGTGAAGC+TGG 0.455065 3_2:+87882780 Msa0434860:CDS
TCATTAATCGGAAGAACATC+AGG 0.455995 3_2:-87883035 None:intergenic
CGGCTTTAAAAGCGAGTTGT+TGG 0.456722 3_2:-87882731 None:intergenic
TTAGGGCAAGGAATGGAGTC+TGG 0.460253 3_2:-87882692 None:intergenic
CATGCCGTTATGCATACTTA+AGG 0.465792 3_2:+87885842 Msa0434860:CDS
TGATGGAACATTGCTCAGTT+CGG 0.471327 3_2:-87882355 None:intergenic
AGATTCGGAGGTTGTTGGGT+CGG 0.473762 3_2:-87882439 None:intergenic
GAAGAAACCCCTTGTGGTTG+TGG 0.474078 3_2:-87882270 None:intergenic
TTTAAACAAAACTGGGTGTA+CGG 0.479439 3_2:-87882029 None:intergenic
TGGCCTCCGACCATTACAAT+TGG 0.481111 3_2:-87885986 None:intergenic
GATTGAGATTCGGAGGTTGT+TGG 0.484783 3_2:-87882444 None:intergenic
TTTCACGTCGTGTTAGCGAA+TGG 0.485478 3_2:+87886089 Msa0434860:three_prime_UTR
TCCAAATTCTATCTATGCAA+AGG 0.485971 3_2:-87886115 None:intergenic
AACAACCTCCGAATCTCAAT+CGG 0.488511 3_2:+87882446 Msa0434860:CDS
CGGTTGCTTCATGGTATATG+TGG 0.491099 3_2:+87883159 Msa0434860:CDS
GACGGAGTCGACAGCGGTGG+TGG 0.492448 3_2:-87882310 None:intergenic
TGTAGGGCTGCCTGTGCTTG+GGG 0.497587 3_2:+87885743 Msa0434860:intron
CGCCGCATAGAGCAATAAAC+CGG 0.498184 3_2:-87882770 None:intergenic
AGCCTTTATTAATCTTGCAC+AGG 0.503610 3_2:-87885936 None:intergenic
GTGGAGGTTTGTTGAAGCGA+AGG 0.503950 3_2:+87883178 Msa0434860:CDS
CCAAATTCTATCTATGCAAA+GGG 0.504620 3_2:-87886114 None:intergenic
GAAGTGGAAGCCTTATCGTT+CGG 0.505451 3_2:+87883139 Msa0434860:CDS
CGCTAACACGACGTGAAACA+AGG 0.505668 3_2:-87886084 None:intergenic
GAATTCAATCCCTCACATAT+GGG 0.513716 3_2:+87882222 Msa0434860:exon
TGGAGGTTTGTTGAAGCGAA+GGG 0.516701 3_2:+87883179 Msa0434860:CDS
AATTTCACCGGTTACCGATA+GGG 0.516784 3_2:-87882193 None:intergenic
CTTGCCTCGGCCATCTCAGA+TGG 0.518209 3_2:+87883103 Msa0434860:CDS
CAGTACCAAGCGGTAAAAGA+TGG 0.519927 3_2:-87886026 None:intergenic
ATCATCCATATTTACAATAG+CGG 0.520609 3_2:-87882928 None:intergenic
TTGGATGTCAATATAAATGC+TGG 0.521047 3_2:+87886133 Msa0434860:three_prime_UTR
ACAATTGAGGTTCGTTGTTG+TGG 0.522531 3_2:-87882540 None:intergenic
TTGCTCAGTTCGGATTCTAC+GGG 0.522751 3_2:-87882345 None:intergenic
GTTATCTTCATGATTTGGCT+AGG 0.524825 3_2:+87882877 Msa0434860:CDS
GCAACAGCAGCAGCAGTTGA+AGG 0.531886 3_2:-87883206 None:intergenic
GGAGTCGACAGCGGTGGTGG+CGG 0.536044 3_2:-87882307 None:intergenic
AATGATCTTGGTGTTCGGAA+AGG 0.537519 3_2:+87883053 Msa0434860:CDS
CATGAAGCAACCGAACGATA+AGG 0.537784 3_2:-87883149 None:intergenic
TAATTTCACCGGTTACCGAT+AGG 0.540017 3_2:-87882194 None:intergenic
GTGCGAAGGTGAAGTTGAGA+TGG 0.543548 3_2:+87882590 Msa0434860:CDS
TGGCTAGGAAGTATCAGAAT+GGG 0.545890 3_2:+87882892 Msa0434860:CDS
GTACAAGATACTACGGGTTA+GGG 0.549172 3_2:-87882709 None:intergenic
GGTGGCGGAGATTGTGTTGT+CGG 0.551572 3_2:-87882292 None:intergenic
GTTGTTGGTACAAGATACTA+CGG 0.551894 3_2:-87882716 None:intergenic
TGCGTCTTCGCCCATATGTG+AGG 0.553154 3_2:-87882232 None:intergenic
TATTTGCCAATTGTAATGGT+CGG 0.553222 3_2:+87885980 Msa0434860:three_prime_UTR
CTATCACTGTCCCCAAGCAC+AGG 0.554417 3_2:-87885753 None:intergenic
TTGCTTCATGGTATATGTGG+AGG 0.557460 3_2:+87883162 Msa0434860:CDS
TTGCTTAAGATTGCATATGT+TGG 0.557615 3_2:+87883429 Msa0434860:intron
CTTTCTCCTCCTAACCCTAT+CGG 0.559273 3_2:+87882179 Msa0434860:five_prime_UTR
TCGGATCTTACGAGGACGGA+GGG 0.560273 3_2:-87882406 None:intergenic
TTGGCTAGGAAGTATCAGAA+TGG 0.561670 3_2:+87882891 Msa0434860:CDS
TTGTTCCGAAAATTGTAGCT+AGG 0.562008 3_2:+87882559 Msa0434860:CDS
ATAATCTAGATGACTTGCCT+CGG 0.562183 3_2:+87883090 Msa0434860:CDS
TCAACAGCTTCGTCAAATTG+GGG 0.564716 3_2:+87882836 Msa0434860:CDS
CCGGGTATAGATGGAAGTAC+CGG 0.564853 3_2:-87882751 None:intergenic
TGATCTTGGTGTTCGGAAAG+GGG 0.566268 3_2:+87883055 Msa0434860:CDS
GAATTCAAGATTAATTTCAC+CGG 0.566777 3_2:-87882205 None:intergenic
GCATATGTTGGTGATAATGA+TGG 0.573390 3_2:+87883441 Msa0434860:CDS
GCTGCTGCTGCTGTTGATGG+TGG 0.575941 3_2:-87883262 None:intergenic
CCGGTACTTCCATCTATACC+CGG 0.576685 3_2:+87882751 Msa0434860:CDS
TGGATCAATTATGTGAGAAG+TGG 0.576910 3_2:+87883123 Msa0434860:CDS
CATAATTGATCCATCTGAGA+TGG 0.576912 3_2:-87883113 None:intergenic
CTACGGGTTAGGGCAAGGAA+TGG 0.578814 3_2:-87882699 None:intergenic
GCGTCTTCGCCCATATGTGA+GGG 0.579845 3_2:-87882231 None:intergenic
TTGCCAATTGTAATGGTCGG+AGG 0.582097 3_2:+87885983 Msa0434860:three_prime_UTR
CAACGGACGGAACAACAAAA+CGG 0.582839 3_2:+87882509 Msa0434860:CDS
ATTGAGGTTCGTTGTTGTGG+TGG 0.584929 3_2:-87882537 None:intergenic
GCTAGGTCACTTTCGTGCGA+AGG 0.586188 3_2:+87882576 Msa0434860:CDS
AGATACTACGGGTTAGGGCA+AGG 0.587198 3_2:-87882704 None:intergenic
CCAACCAATTCCACCACCGC+CGG 0.587677 3_2:+87882480 Msa0434860:CDS
TACGGGGATAATAGTTTCGA+CGG 0.589338 3_2:-87882328 None:intergenic
CCGCCGGAAAATCCAACGGA+CGG 0.590648 3_2:+87882496 Msa0434860:CDS
CGATGAGAGGTGATAAGAGT+GGG 0.592687 3_2:-87882638 None:intergenic
CAACCTCAGCCACAACCACA+AGG 0.593857 3_2:+87882261 Msa0434860:CDS
TGAATAACATGTTTAATATG+GGG 0.599833 3_2:+87883318 Msa0434860:CDS
GGTTTCCGATTGAGATTCGG+AGG 0.602513 3_2:-87882451 None:intergenic
ACCTCAGCCACAACCACAAG+GGG 0.604739 3_2:+87882263 Msa0434860:CDS
CTTAAGTATGCATAACGGCA+TGG 0.605249 3_2:-87885841 None:intergenic
CGGTTACCGATAGGGTTAGG+AGG 0.609289 3_2:-87882185 None:intergenic
TGATCCATCTGAGATGGCCG+AGG 0.610828 3_2:-87883107 None:intergenic
CTGCTGCAAGCCATTGCCAG+TGG 0.628730 3_2:-87883228 None:intergenic
GAGACCTTTCGGATCTTACG+AGG 0.632398 3_2:-87882414 None:intergenic
GTGGTACTTTAAACAAAACT+GGG 0.638842 3_2:-87882036 None:intergenic
AGAGTGGGTCTGCGGTACGA+AGG 0.640787 3_2:-87882623 None:intergenic
TTCGGATCTTACGAGGACGG+AGG 0.648070 3_2:-87882407 None:intergenic
CGGTTTATTGCTCTATGCGG+CGG 0.648731 3_2:+87882771 Msa0434860:CDS
TTGTTGGTACAAGATACTAC+GGG 0.649339 3_2:-87882715 None:intergenic
AACCTCAGCCACAACCACAA+GGG 0.649650 3_2:+87882262 Msa0434860:CDS
CTATCCTTAAGTATGCATAA+CGG 0.652937 3_2:-87885846 None:intergenic
AGGTGATAAGAGTGGGTCTG+CGG 0.654092 3_2:-87882631 None:intergenic
AGTTTCGACGGAGTCGACAG+CGG 0.661441 3_2:-87882316 None:intergenic
CCGTCCTCGTAAGATCCGAA+AGG 0.662065 3_2:+87882410 Msa0434860:CDS
ACCACCGCCGGAAAATCCAA+CGG 0.663130 3_2:+87882492 Msa0434860:CDS
CCTTTCGGATCTTACGAGGA+CGG 0.664581 3_2:-87882410 None:intergenic
TTCGACGGAGTCGACAGCGG+TGG 0.669382 3_2:-87882313 None:intergenic
TGGAAATTATCAAACGTAGG+TGG 0.669577 3_2:-87882672 None:intergenic
TGCTCAGTTCGGATTCTACG+GGG 0.671223 3_2:-87882344 None:intergenic
TCGATGAGAGGTGATAAGAG+TGG 0.675819 3_2:-87882639 None:intergenic
ACCCGGTTTATTGCTCTATG+CGG 0.679051 3_2:+87882768 Msa0434860:CDS
TTCCAAACCACAGTACCAAG+CGG 0.684999 3_2:-87886036 None:intergenic
CGGATCTTACGAGGACGGAG+GGG 0.706604 3_2:-87882405 None:intergenic
GGTTGATGAATGTCGATGAG+AGG 0.708425 3_2:-87882651 None:intergenic
TTGTCGGAAGAAACCCCTTG+TGG 0.713634 3_2:-87882276 None:intergenic
GCCGCATAGAGCAATAAACC+GGG 0.722126 3_2:-87882769 None:intergenic
GTCTGGAAATTATCAAACGT+AGG 0.725407 3_2:-87882675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAACATGTTATTCAT+AGG - chr3_2:87883317-87883336 None:intergenic 15.0%
!! TATGAATAACATGTTTAATA+TGG + chr3_2:87883316-87883335 Msa0434860:CDS 15.0%
!! ATGAATAACATGTTTAATAT+GGG + chr3_2:87883317-87883336 Msa0434860:CDS 15.0%
!! ATGATATTAACATATAAGAT+AGG + chr3_2:87884196-87884215 Msa0434860:intron 15.0%
!! AAAATTTGATTGACTAAATA+TGG + chr3_2:87884278-87884297 Msa0434860:intron 15.0%
!!! TCATTTTAATGTTTTTGATT+AGG + chr3_2:87884546-87884565 Msa0434860:intron 15.0%
!! AAAAAAATTTAGTCTGATTT+AGG - chr3_2:87884612-87884631 None:intergenic 15.0%
!!! CTAAATTTTTTTAATAGAGA+AGG + chr3_2:87884620-87884639 Msa0434860:intron 15.0%
!! ATGTAAAAACAAATAAACAA+GGG - chr3_2:87884714-87884733 None:intergenic 15.0%
!! AATGTAAAAACAAATAAACA+AGG - chr3_2:87884715-87884734 None:intergenic 15.0%
!!! ATCAATTATTTACCATATTT+TGG + chr3_2:87885063-87885082 Msa0434860:intron 15.0%
!!! TTTTTTGTCTTAATAAAGTT+AGG - chr3_2:87885341-87885360 None:intergenic 15.0%
!! AAATAAAAAAAGCAAAACTA+AGG - chr3_2:87885965-87885984 None:intergenic 15.0%
!! TGAATAACATGTTTAATATG+GGG + chr3_2:87883318-87883337 Msa0434860:CDS 20.0%
!!! TAGTGTACTGTAAAAATTTT+AGG + chr3_2:87883563-87883582 Msa0434860:intron 20.0%
!! AACAGAAATTGAACAATAAT+AGG - chr3_2:87883953-87883972 None:intergenic 20.0%
!!! AGTCAATCAAATTTTATTCA+AGG - chr3_2:87884273-87884292 None:intergenic 20.0%
!! TCAATAAAAAAATATGTGAG+TGG + chr3_2:87884364-87884383 Msa0434860:intron 20.0%
!! TGACAAAATAATCTCTAATA+CGG - chr3_2:87885287-87885306 None:intergenic 20.0%
!!! TATAGAAGTACAACATATAT+AGG - chr3_2:87885415-87885434 None:intergenic 20.0%
!! AAATTATTGTTTCATTTGTC+CGG + chr3_2:87885518-87885537 Msa0434860:intron 20.0%
!! GCATATATAATTATAAAACC+CGG - chr3_2:87885540-87885559 None:intergenic 20.0%
!!! TTTTTATTTGCCAATTGTAA+TGG + chr3_2:87885976-87885995 Msa0434860:three_prime_UTR 20.0%
!!! GATTCGTATTCTTATTTTAT+AGG + chr3_2:87886158-87886177 Msa0434860:three_prime_UTR 20.0%
! AGTATCAATCAAATTAGTGA+GGG - chr3_2:87882122-87882141 None:intergenic 25.0%
! GAATTCAAGATTAATTTCAC+CGG - chr3_2:87882208-87882227 None:intergenic 25.0%
! ATCATCCATATTTACAATAG+CGG - chr3_2:87882931-87882950 None:intergenic 25.0%
! TTATTCATAGGATCCATAAT+TGG - chr3_2:87883305-87883324 None:intergenic 25.0%
!!! TAATCCTTTTAGGTAATTCA+AGG + chr3_2:87883632-87883651 Msa0434860:intron 25.0%
! GAAAATGTAGTAACAGAATT+TGG + chr3_2:87883664-87883683 Msa0434860:intron 25.0%
!!! ACAACTTTTTAATTCTCTCT+AGG + chr3_2:87883740-87883759 Msa0434860:intron 25.0%
! AAGTGCAATAAAGATAACAA+AGG - chr3_2:87883798-87883817 None:intergenic 25.0%
! AGATATGAACTTTCATCTTA+CGG + chr3_2:87883839-87883858 Msa0434860:intron 25.0%
! AGGAAAGAAAAGAAAGAATA+CGG - chr3_2:87883871-87883890 None:intergenic 25.0%
! CAGTATTAGAAATAATGTCA+TGG + chr3_2:87884022-87884041 Msa0434860:intron 25.0%
! GAGTATATATTGCATATTCT+AGG + chr3_2:87884087-87884106 Msa0434860:intron 25.0%
!! ATGCTTTTCTATATGAATCT+TGG - chr3_2:87884178-87884197 None:intergenic 25.0%
! TTACCATATTCATCTTGTTA+GGG + chr3_2:87884394-87884413 Msa0434860:intron 25.0%
! CTGTGAAAGAAAAAAATTTG+TGG + chr3_2:87884643-87884662 Msa0434860:intron 25.0%
!! TTTTTACATTACAAGTCTAG+TGG + chr3_2:87884725-87884744 Msa0434860:intron 25.0%
! AACTTGCACAATTAACAAAT+AGG - chr3_2:87884763-87884782 None:intergenic 25.0%
!! TTGTCCCTTTAAATTTTTCA+AGG + chr3_2:87884811-87884830 Msa0434860:intron 25.0%
! GATGCCTTGAAAAATTTAAA+GGG - chr3_2:87884818-87884837 None:intergenic 25.0%
! AGATGCCTTGAAAAATTTAA+AGG - chr3_2:87884819-87884838 None:intergenic 25.0%
!! AATAGTCGATTTCCAAAATA+TGG - chr3_2:87885078-87885097 None:intergenic 25.0%
! GACAAAATAATCTCTAATAC+GGG - chr3_2:87885286-87885305 None:intergenic 25.0%
! AATTATTGTTTCATTTGTCC+GGG + chr3_2:87885519-87885538 Msa0434860:intron 25.0%
TTTAAACAAAACTGGGTGTA+CGG - chr3_2:87882032-87882051 None:intergenic 30.0%
GTGGTACTTTAAACAAAACT+GGG - chr3_2:87882039-87882058 None:intergenic 30.0%
TGTGGTACTTTAAACAAAAC+TGG - chr3_2:87882040-87882059 None:intergenic 30.0%
GAAGAATAATGTGATTGTAG+AGG - chr3_2:87882094-87882113 None:intergenic 30.0%
GTATCAATCAAATTAGTGAG+GGG - chr3_2:87882121-87882140 None:intergenic 30.0%
CAGTATCAATCAAATTAGTG+AGG - chr3_2:87882123-87882142 None:intergenic 30.0%
! TACAATTTTCGGAACAATTG+AGG - chr3_2:87882556-87882575 None:intergenic 30.0%
AGCTAGTTATCTTCATGATT+TGG + chr3_2:87882872-87882891 Msa0434860:CDS 30.0%
TGATTCCGCTATTGTAAATA+TGG + chr3_2:87882923-87882942 Msa0434860:CDS 30.0%
ACTATGCTTACTATGGTTAA+TGG + chr3_2:87882963-87882982 Msa0434860:CDS 30.0%
CTATGCTTACTATGGTTAAT+GGG + chr3_2:87882964-87882983 Msa0434860:CDS 30.0%
TTGCTTAAGATTGCATATGT+TGG + chr3_2:87883429-87883448 Msa0434860:intron 30.0%
! TATTGACTACTATGCCTAAA+TGG - chr3_2:87883527-87883546 None:intergenic 30.0%
! GTGAAATATATCCTGTTTTC+AGG + chr3_2:87883603-87883622 Msa0434860:intron 30.0%
AATGCCTTGAATTACCTAAA+AGG - chr3_2:87883639-87883658 None:intergenic 30.0%
! GAAACAAGTGAATGTAGTTT+TGG + chr3_2:87883704-87883723 Msa0434860:intron 30.0%
AGATGAAAGTTCATATCTTG+AGG - chr3_2:87883837-87883856 None:intergenic 30.0%
GATATGAACTTTCATCTTAC+GGG + chr3_2:87883840-87883859 Msa0434860:intron 30.0%
!! TAATGTCATGGCTTTTGAAA+TGG + chr3_2:87884034-87884053 Msa0434860:intron 30.0%
!!! AATGTCATGGCTTTTGAAAT+GGG + chr3_2:87884035-87884054 Msa0434860:intron 30.0%
TGTGTAGATTTAATGAAGTG+AGG + chr3_2:87884149-87884168 Msa0434860:intron 30.0%
GTGCAATGAATCATAACTTA+TGG + chr3_2:87884227-87884246 Msa0434860:intron 30.0%
GAATACATGGCTTATAACTT+AGG + chr3_2:87884307-87884326 Msa0434860:intron 30.0%
CTTACCATATTCATCTTGTT+AGG + chr3_2:87884393-87884412 Msa0434860:intron 30.0%
CATGTAATAATTGTGTGCAA+AGG - chr3_2:87884435-87884454 None:intergenic 30.0%
ATTTGTGGTTGCAAGTTAAA+AGG + chr3_2:87884658-87884677 Msa0434860:intron 30.0%
!!! CGTCTTTGTTTTGCTTTATT+CGG + chr3_2:87884891-87884910 Msa0434860:intron 30.0%
GAACAAATAGACTACTGAAA+AGG - chr3_2:87884926-87884945 None:intergenic 30.0%
TGTGAAATCCCAAAAAACAA+AGG - chr3_2:87885044-87885063 None:intergenic 30.0%
CAGTCTCTTAAGTTATAGTT+TGG + chr3_2:87885098-87885117 Msa0434860:intron 30.0%
TCTCTTAAGTTATAGTTTGG+CGG + chr3_2:87885101-87885120 Msa0434860:intron 30.0%
!! AGATTATTTTGTCAGTAGCA+TGG + chr3_2:87885293-87885312 Msa0434860:intron 30.0%
AGTTAGGACAACAATTCTTA+AGG - chr3_2:87885325-87885344 None:intergenic 30.0%
GCAAAGTTTAGTTACTTAGA+AGG + chr3_2:87885558-87885577 Msa0434860:intron 30.0%
AAGTTTAGTTACTTAGAAGG+AGG + chr3_2:87885561-87885580 Msa0434860:intron 30.0%
CTATCCTTAAGTATGCATAA+CGG - chr3_2:87885849-87885868 None:intergenic 30.0%
AACCTGTGCAAGATTAATAA+AGG + chr3_2:87885934-87885953 Msa0434860:three_prime_UTR 30.0%
TATTTGCCAATTGTAATGGT+CGG + chr3_2:87885980-87885999 Msa0434860:three_prime_UTR 30.0%
AAGGACTCACATTAGATATA+AGG - chr3_2:87886068-87886087 None:intergenic 30.0%
CCAAATTCTATCTATGCAAA+GGG - chr3_2:87886117-87886136 None:intergenic 30.0%
TCCAAATTCTATCTATGCAA+AGG - chr3_2:87886118-87886137 None:intergenic 30.0%
TTGGATGTCAATATAAATGC+TGG + chr3_2:87886133-87886152 Msa0434860:three_prime_UTR 30.0%
AATCAAATTAGTGAGGGGAT+GGG - chr3_2:87882116-87882135 None:intergenic 35.0%
TGAATTCAATCCCTCACATA+TGG + chr3_2:87882221-87882240 Msa0434860:exon 35.0%
GAATTCAATCCCTCACATAT+GGG + chr3_2:87882222-87882241 Msa0434860:exon 35.0%
TTGTTCCGAAAATTGTAGCT+AGG + chr3_2:87882559-87882578 Msa0434860:CDS 35.0%
! AGTGACCTAGCTACAATTTT+CGG - chr3_2:87882567-87882586 None:intergenic 35.0%
TGGAAATTATCAAACGTAGG+TGG - chr3_2:87882675-87882694 None:intergenic 35.0%
GTCTGGAAATTATCAAACGT+AGG - chr3_2:87882678-87882697 None:intergenic 35.0%
TTGTTGGTACAAGATACTAC+GGG - chr3_2:87882718-87882737 None:intergenic 35.0%
GTTGTTGGTACAAGATACTA+CGG - chr3_2:87882719-87882738 None:intergenic 35.0%
! GTTATCTTCATGATTTGGCT+AGG + chr3_2:87882877-87882896 Msa0434860:CDS 35.0%
! GCTTTTCACTATGCTTACTA+TGG + chr3_2:87882956-87882975 Msa0434860:CDS 35.0%
CTTACTATGGTTAATGGGAT+TGG + chr3_2:87882969-87882988 Msa0434860:CDS 35.0%
TCATTAATCGGAAGAACATC+AGG - chr3_2:87883038-87883057 None:intergenic 35.0%
GTTCTTCCGATTAATGATCT+TGG + chr3_2:87883041-87883060 Msa0434860:CDS 35.0%
CGAACACCAAGATCATTAAT+CGG - chr3_2:87883050-87883069 None:intergenic 35.0%
!! CGATTAATGATCTTGGTGTT+CGG + chr3_2:87883048-87883067 Msa0434860:CDS 35.0%
! ATAATCTAGATGACTTGCCT+CGG + chr3_2:87883090-87883109 Msa0434860:CDS 35.0%
CATAATTGATCCATCTGAGA+TGG - chr3_2:87883116-87883135 None:intergenic 35.0%
TGGATCAATTATGTGAGAAG+TGG + chr3_2:87883123-87883142 Msa0434860:CDS 35.0%
GCATTCACAACAACCAATTA+TGG + chr3_2:87883289-87883308 Msa0434860:CDS 35.0%
!! GCATATGTTGGTGATAATGA+TGG + chr3_2:87883441-87883460 Msa0434860:CDS 35.0%
!! CATGTGTTAGTCTTCCATTT+AGG + chr3_2:87883510-87883529 Msa0434860:intron 35.0%
TAGTCAATAGCATGCTATAG+CGG + chr3_2:87883538-87883557 Msa0434860:intron 35.0%
AATCATGAATGACAGCCATT+AGG - chr3_2:87883922-87883941 None:intergenic 35.0%
!!! ATGTCATGGCTTTTGAAATG+GGG + chr3_2:87884036-87884055 Msa0434860:intron 35.0%
TAACTTATGGCATACAATCG+AGG + chr3_2:87884240-87884259 Msa0434860:intron 35.0%
AATATGGAGCTGTGAATACA+TGG + chr3_2:87884294-87884313 Msa0434860:intron 35.0%
CATCCCTAACAAGATGAATA+TGG - chr3_2:87884400-87884419 None:intergenic 35.0%
ATTCTTGCCAGAAAGATTCT+AGG + chr3_2:87884469-87884488 Msa0434860:intron 35.0%
ATTACAGCCTAGAATCTTTC+TGG - chr3_2:87884479-87884498 None:intergenic 35.0%
ATGTACATTATGTTTCCCTG+AGG + chr3_2:87884497-87884516 Msa0434860:intron 35.0%
GGTTGCAAGTTAAAAGGATT+TGG + chr3_2:87884664-87884683 Msa0434860:intron 35.0%
AAGGGACAAAAAGTTAACTC+AGG - chr3_2:87884800-87884819 None:intergenic 35.0%
! TCTGATTTGATCATTGACCT+TGG + chr3_2:87884972-87884991 Msa0434860:intron 35.0%
TTGATCATTGACCTTGGTAT+TGG + chr3_2:87884978-87884997 Msa0434860:intron 35.0%
TGATCATTGACCTTGGTATT+GGG + chr3_2:87884979-87884998 Msa0434860:intron 35.0%
AAAAGATGTACCCAATACCA+AGG - chr3_2:87884992-87885011 None:intergenic 35.0%
!!! TTGCGTGACCTTTGTTTTTT+GGG + chr3_2:87885033-87885052 Msa0434860:intron 35.0%
!! CTTTCTTCTGTTGGTTGTTT+TGG + chr3_2:87885381-87885400 Msa0434860:intron 35.0%
! TGTCTGTTTGCTTTGGATTA+TGG + chr3_2:87885449-87885468 Msa0434860:intron 35.0%
ATGGTTTATGCCATAGTATG+TGG + chr3_2:87885468-87885487 Msa0434860:intron 35.0%
TTTAGTTACTTAGAAGGAGG+AGG + chr3_2:87885564-87885583 Msa0434860:intron 35.0%
TTAGTTACTTAGAAGGAGGA+GGG + chr3_2:87885565-87885584 Msa0434860:intron 35.0%
AAGATCGAGAACAGAAACAA+AGG - chr3_2:87885636-87885655 None:intergenic 35.0%
! CACAGGTTTTACTAAACACA+AGG - chr3_2:87885922-87885941 None:intergenic 35.0%
AGCCTTTATTAATCTTGCAC+AGG - chr3_2:87885939-87885958 None:intergenic 35.0%
TGGACATGACAACTTGAAAT+TGG - chr3_2:87886009-87886028 None:intergenic 35.0%
CCCTTTGCATAGATAGAATT+TGG + chr3_2:87886114-87886133 Msa0434860:three_prime_UTR 35.0%
CAATCAAATTAGTGAGGGGA+TGG - chr3_2:87882117-87882136 None:intergenic 40.0%
! AATTTCACCGGTTACCGATA+GGG - chr3_2:87882196-87882215 None:intergenic 40.0%
! TAATTTCACCGGTTACCGAT+AGG - chr3_2:87882197-87882216 None:intergenic 40.0%
TACGGGGATAATAGTTTCGA+CGG - chr3_2:87882331-87882350 None:intergenic 40.0%
ATTGCTCAGTTCGGATTCTA+CGG - chr3_2:87882349-87882368 None:intergenic 40.0%
TGATGGAACATTGCTCAGTT+CGG - chr3_2:87882358-87882377 None:intergenic 40.0%
ATTGAGATTCGGAGGTTGTT+GGG - chr3_2:87882446-87882465 None:intergenic 40.0%
AACAACCTCCGAATCTCAAT+CGG + chr3_2:87882446-87882465 Msa0434860:CDS 40.0%
TAGGGTTTCCGATTGAGATT+CGG - chr3_2:87882457-87882476 None:intergenic 40.0%
ACAATTGAGGTTCGTTGTTG+TGG - chr3_2:87882543-87882562 None:intergenic 40.0%
! GTACAAGATACTACGGGTTA+GGG - chr3_2:87882712-87882731 None:intergenic 40.0%
!!! CAACAACTCGCTTTTAAAGC+CGG + chr3_2:87882732-87882751 Msa0434860:CDS 40.0%
AGCAATAAACCGGGTATAGA+TGG - chr3_2:87882763-87882782 None:intergenic 40.0%
GTTAGGGCAAGAACATTATC+AGG - chr3_2:87882813-87882832 None:intergenic 40.0%
CTCAACAGCTTCGTCAAATT+GGG + chr3_2:87882835-87882854 Msa0434860:CDS 40.0%
TCAACAGCTTCGTCAAATTG+GGG + chr3_2:87882836-87882855 Msa0434860:CDS 40.0%
!! TTGGCTAGGAAGTATCAGAA+TGG + chr3_2:87882891-87882910 Msa0434860:CDS 40.0%
!! TGGCTAGGAAGTATCAGAAT+GGG + chr3_2:87882892-87882911 Msa0434860:CDS 40.0%
!! TGGTTAATGGGATTGGTTCT+TGG + chr3_2:87882976-87882995 Msa0434860:CDS 40.0%
!! AATGATCTTGGTGTTCGGAA+AGG + chr3_2:87883053-87883072 Msa0434860:CDS 40.0%
!! ATGATCTTGGTGTTCGGAAA+GGG + chr3_2:87883054-87883073 Msa0434860:CDS 40.0%
TTGCTTCATGGTATATGTGG+AGG + chr3_2:87883162-87883181 Msa0434860:CDS 40.0%
GATTATGAGCACCTGAAAAC+AGG - chr3_2:87883617-87883636 None:intergenic 40.0%
! CAGGTGCTCATAATCCTTTT+AGG + chr3_2:87883622-87883641 Msa0434860:intron 40.0%
GTGAAAGCTTACTTCGTCAA+AGG - chr3_2:87883891-87883910 None:intergenic 40.0%
CTTTCACGAATCACACCTAA+TGG + chr3_2:87883904-87883923 Msa0434860:intron 40.0%
!!! TGTCATGGCTTTTGAAATGG+GGG + chr3_2:87884037-87884056 Msa0434860:intron 40.0%
CTACACACTAGTAATGCAAC+AGG - chr3_2:87884136-87884155 None:intergenic 40.0%
TCTCACATCTTCATTCCTCA+GGG - chr3_2:87884515-87884534 None:intergenic 40.0%
TTCTCACATCTTCATTCCTC+AGG - chr3_2:87884516-87884535 None:intergenic 40.0%
AATTGTGCAAGTTACGCTCT+AGG + chr3_2:87884770-87884789 Msa0434860:intron 40.0%
ATTGTTGAGACGAACTAAGC+TGG + chr3_2:87884852-87884871 Msa0434860:intron 40.0%
!!! GTTGCGTGACCTTTGTTTTT+TGG + chr3_2:87885032-87885051 Msa0434860:intron 40.0%
TAGTTTGGCGGTCTAGTAAT+TGG + chr3_2:87885113-87885132 Msa0434860:intron 40.0%
! ATGCCTTCAATCTGAAGTGT+CGG - chr3_2:87885167-87885186 None:intergenic 40.0%
ACTGGGCTACATTAGAGAAA+CGG - chr3_2:87885242-87885261 None:intergenic 40.0%
CATGCTTAGCTTCACAAACT+GGG - chr3_2:87885259-87885278 None:intergenic 40.0%
TCATGCTTAGCTTCACAAAC+TGG - chr3_2:87885260-87885279 None:intergenic 40.0%
CGTGAAGTTCTTTCTTCTGT+TGG + chr3_2:87885372-87885391 Msa0434860:intron 40.0%
TGCCATAGTATGTGGTTCAA+TGG + chr3_2:87885476-87885495 Msa0434860:intron 40.0%
CACCATTGAACCACATACTA+TGG - chr3_2:87885481-87885500 None:intergenic 40.0%
TAGTTACTTAGAAGGAGGAG+GGG + chr3_2:87885566-87885585 Msa0434860:intron 40.0%
GTTTCTGTTCTCGATCTTCT+TGG + chr3_2:87885638-87885657 Msa0434860:intron 40.0%
TGTCTCATTCTGATGCTTGT+AGG + chr3_2:87885726-87885745 Msa0434860:intron 40.0%
GTCTCATTCTGATGCTTGTA+GGG + chr3_2:87885727-87885746 Msa0434860:intron 40.0%
CTTAAGTATGCATAACGGCA+TGG - chr3_2:87885844-87885863 None:intergenic 40.0%
CATGCCGTTATGCATACTTA+AGG + chr3_2:87885842-87885861 Msa0434860:CDS 40.0%
! TTGGTACTGTGGTTTGGAAT+TGG + chr3_2:87886040-87886059 Msa0434860:three_prime_UTR 40.0%
! TGGTACTGTGGTTTGGAATT+GGG + chr3_2:87886041-87886060 Msa0434860:three_prime_UTR 40.0%
AAGCAAGATGAGACTCACTG+TGG - chr3_2:87882058-87882077 None:intergenic 45.0%
CTTTCTCCTCCTAACCCTAT+CGG + chr3_2:87882179-87882198 Msa0434860:five_prime_UTR 45.0%
TTGCTCAGTTCGGATTCTAC+GGG - chr3_2:87882348-87882367 None:intergenic 45.0%
GATTGAGATTCGGAGGTTGT+TGG - chr3_2:87882447-87882466 None:intergenic 45.0%
!! GGTGGAATTGGTTGGCTTTA+GGG - chr3_2:87882475-87882494 None:intergenic 45.0%
!! TGGTGGAATTGGTTGGCTTT+AGG - chr3_2:87882476-87882495 None:intergenic 45.0%
CAACGGACGGAACAACAAAA+CGG + chr3_2:87882509-87882528 Msa0434860:CDS 45.0%
ATTGAGGTTCGTTGTTGTGG+TGG - chr3_2:87882540-87882559 None:intergenic 45.0%
CGATGAGAGGTGATAAGAGT+GGG - chr3_2:87882641-87882660 None:intergenic 45.0%
TCGATGAGAGGTGATAAGAG+TGG - chr3_2:87882642-87882661 None:intergenic 45.0%
!! GGTTGATGAATGTCGATGAG+AGG - chr3_2:87882654-87882673 None:intergenic 45.0%
GGTACAAGATACTACGGGTT+AGG - chr3_2:87882713-87882732 None:intergenic 45.0%
!! CGGCTTTAAAAGCGAGTTGT+TGG - chr3_2:87882734-87882753 None:intergenic 45.0%
ACCCGGTTTATTGCTCTATG+CGG + chr3_2:87882768-87882787 Msa0434860:CDS 45.0%
ACGAAGCTGTTGAGCAGTTA+GGG - chr3_2:87882829-87882848 None:intergenic 45.0%
GCTCAACAGCTTCGTCAAAT+TGG + chr3_2:87882834-87882853 Msa0434860:CDS 45.0%
CTTCGTCAAATTGGGGTTTC+TGG + chr3_2:87882843-87882862 Msa0434860:CDS 45.0%
!! TGATCTTGGTGTTCGGAAAG+GGG + chr3_2:87883055-87883074 Msa0434860:CDS 45.0%
! GAAGTGGAAGCCTTATCGTT+CGG + chr3_2:87883139-87883158 Msa0434860:CDS 45.0%
CATGAAGCAACCGAACGATA+AGG - chr3_2:87883152-87883171 None:intergenic 45.0%
CTTATCGTTCGGTTGCTTCA+TGG + chr3_2:87883150-87883169 Msa0434860:CDS 45.0%
CGGTTGCTTCATGGTATATG+TGG + chr3_2:87883159-87883178 Msa0434860:CDS 45.0%
!! TGGAGGTTTGTTGAAGCGAA+GGG + chr3_2:87883179-87883198 Msa0434860:CDS 45.0%
! TTTGAAATGGGGGATCAACC+AGG + chr3_2:87884047-87884066 Msa0434860:intron 45.0%
TTGAAATGGGGGATCAACCA+GGG + chr3_2:87884048-87884067 Msa0434860:intron 45.0%
GTGCATATAGAAATACGCGC+AGG - chr3_2:87885145-87885164 None:intergenic 45.0%
TCTCAGCTGTCTGTTTGCTT+TGG + chr3_2:87885442-87885461 Msa0434860:intron 45.0%
GGAGGGGTTTGTGAATTCAT+TGG + chr3_2:87885582-87885601 Msa0434860:intron 45.0%
TCTGTTCTCGATCTTCTTGG+AGG + chr3_2:87885641-87885660 Msa0434860:intron 45.0%
TTGCCAATTGTAATGGTCGG+AGG + chr3_2:87885983-87886002 Msa0434860:three_prime_UTR 45.0%
! CATGTCCATCTTTTACCGCT+TGG + chr3_2:87886021-87886040 Msa0434860:three_prime_UTR 45.0%
CAGTACCAAGCGGTAAAAGA+TGG - chr3_2:87886029-87886048 None:intergenic 45.0%
! TCTTTTACCGCTTGGTACTG+TGG + chr3_2:87886029-87886048 Msa0434860:three_prime_UTR 45.0%
TTCCAAACCACAGTACCAAG+CGG - chr3_2:87886039-87886058 None:intergenic 45.0%
TTTCACGTCGTGTTAGCGAA+TGG + chr3_2:87886089-87886108 Msa0434860:three_prime_UTR 45.0%
TTCACGTCGTGTTAGCGAAT+GGG + chr3_2:87886090-87886109 Msa0434860:three_prime_UTR 45.0%
CTCCTAACCCTATCGGTAAC+CGG + chr3_2:87882186-87882205 Msa0434860:five_prime_UTR 50.0%
AACCTCAGCCACAACCACAA+GGG + chr3_2:87882262-87882281 Msa0434860:CDS 50.0%
GAAGAAACCCCTTGTGGTTG+TGG - chr3_2:87882273-87882292 None:intergenic 50.0%
TTGTCGGAAGAAACCCCTTG+TGG - chr3_2:87882279-87882298 None:intergenic 50.0%
TGCTCAGTTCGGATTCTACG+GGG - chr3_2:87882347-87882366 None:intergenic 50.0%
CCTTTCGGATCTTACGAGGA+CGG - chr3_2:87882413-87882432 None:intergenic 50.0%
GAGACCTTTCGGATCTTACG+AGG - chr3_2:87882417-87882436 None:intergenic 50.0%
AGATTCGGAGGTTGTTGGGT+CGG - chr3_2:87882442-87882461 None:intergenic 50.0%
GGTTTCCGATTGAGATTCGG+AGG - chr3_2:87882454-87882473 None:intergenic 50.0%
! GTTCCGTCCGTTGGATTTTC+CGG - chr3_2:87882502-87882521 None:intergenic 50.0%
!!! CGTTTTGTTGTTCCGTCCGT+TGG - chr3_2:87882511-87882530 None:intergenic 50.0%
GTGCGAAGGTGAAGTTGAGA+TGG + chr3_2:87882590-87882609 Msa0434860:CDS 50.0%
AGGTGATAAGAGTGGGTCTG+CGG - chr3_2:87882634-87882653 None:intergenic 50.0%
TTAGGGCAAGGAATGGAGTC+TGG - chr3_2:87882695-87882714 None:intergenic 50.0%
!! AGATACTACGGGTTAGGGCA+AGG - chr3_2:87882707-87882726 None:intergenic 50.0%
! CCGGGTATAGATGGAAGTAC+CGG - chr3_2:87882754-87882773 None:intergenic 50.0%
CCGGTACTTCCATCTATACC+CGG + chr3_2:87882751-87882770 Msa0434860:CDS 50.0%
GCCGCATAGAGCAATAAACC+GGG - chr3_2:87882772-87882791 None:intergenic 50.0%
CGCCGCATAGAGCAATAAAC+CGG - chr3_2:87882773-87882792 None:intergenic 50.0%
CGGTTTATTGCTCTATGCGG+CGG + chr3_2:87882771-87882790 Msa0434860:CDS 50.0%
GACGAAGCTGTTGAGCAGTT+AGG - chr3_2:87882830-87882849 None:intergenic 50.0%
!! GTGGAGGTTTGTTGAAGCGA+AGG + chr3_2:87883178-87883197 Msa0434860:CDS 50.0%
CATGACTCAAGAGATGTCCC+TGG - chr3_2:87884068-87884087 None:intergenic 50.0%
!! GTGCAAGTTACGCTCTAGGA+TGG + chr3_2:87884774-87884793 Msa0434860:intron 50.0%
! GCACCGACACTTCAGATTGA+AGG + chr3_2:87885161-87885180 Msa0434860:intron 50.0%
TGGCCTCCGACCATTACAAT+TGG - chr3_2:87885989-87886008 None:intergenic 50.0%
TACCGCTTGGTACTGTGGTT+TGG + chr3_2:87886034-87886053 Msa0434860:three_prime_UTR 50.0%
CGCTAACACGACGTGAAACA+AGG - chr3_2:87886087-87886106 None:intergenic 50.0%
CGGTTACCGATAGGGTTAGG+AGG - chr3_2:87882188-87882207 None:intergenic 55.0%
! CACCGGTTACCGATAGGGTT+AGG - chr3_2:87882191-87882210 None:intergenic 55.0%
GCGTCTTCGCCCATATGTGA+GGG - chr3_2:87882234-87882253 None:intergenic 55.0%
TGCGTCTTCGCCCATATGTG+AGG - chr3_2:87882235-87882254 None:intergenic 55.0%
CAACCTCAGCCACAACCACA+AGG + chr3_2:87882261-87882280 Msa0434860:CDS 55.0%
ACCTCAGCCACAACCACAAG+GGG + chr3_2:87882263-87882282 Msa0434860:CDS 55.0%
!! GGTGGCGGAGATTGTGTTGT+CGG - chr3_2:87882295-87882314 None:intergenic 55.0%
AGTTTCGACGGAGTCGACAG+CGG - chr3_2:87882319-87882338 None:intergenic 55.0%
!!! ACGGAGGGGCATTTTTGTGG+CGG - chr3_2:87882394-87882413 None:intergenic 55.0%
!!! AGGACGGAGGGGCATTTTTG+TGG - chr3_2:87882397-87882416 None:intergenic 55.0%
TCGGATCTTACGAGGACGGA+GGG - chr3_2:87882409-87882428 None:intergenic 55.0%
TTCGGATCTTACGAGGACGG+AGG - chr3_2:87882410-87882429 None:intergenic 55.0%
CCGTCCTCGTAAGATCCGAA+AGG + chr3_2:87882410-87882429 Msa0434860:CDS 55.0%
TTGGGTCGGGTGAGACCTTT+CGG - chr3_2:87882428-87882447 None:intergenic 55.0%
GATTCGGAGGTTGTTGGGTC+GGG - chr3_2:87882441-87882460 None:intergenic 55.0%
!!! TTTTCCGGCGGTGGTGGAAT+TGG - chr3_2:87882487-87882506 None:intergenic 55.0%
ACCACCGCCGGAAAATCCAA+CGG + chr3_2:87882492-87882511 Msa0434860:CDS 55.0%
! GCTAGGTCACTTTCGTGCGA+AGG + chr3_2:87882576-87882595 Msa0434860:CDS 55.0%
!! CTACGGGTTAGGGCAAGGAA+TGG - chr3_2:87882702-87882721 None:intergenic 55.0%
! TGATCCATCTGAGATGGCCG+AGG - chr3_2:87883110-87883129 None:intergenic 55.0%
GCAACAGCAGCAGCAGTTGA+AGG - chr3_2:87883209-87883228 None:intergenic 55.0%
GATGCTGCTGCTGCTGTTGA+TGG - chr3_2:87883268-87883287 None:intergenic 55.0%
TTGTAGGGCTGCCTGTGCTT+GGG + chr3_2:87885742-87885761 Msa0434860:intron 55.0%
CTATCACTGTCCCCAAGCAC+AGG - chr3_2:87885756-87885775 None:intergenic 55.0%
ACCCCTTGTGGTTGTGGCTG+AGG - chr3_2:87882267-87882286 None:intergenic 60.0%
!! CATTTTTGTGGCGGGGGCGT+TGG - chr3_2:87882385-87882404 None:intergenic 60.0%
!!! GAGGGGCATTTTTGTGGCGG+GGG - chr3_2:87882391-87882410 None:intergenic 60.0%
!!! GGAGGGGCATTTTTGTGGCG+GGG - chr3_2:87882392-87882411 None:intergenic 60.0%
!!! CGGAGGGGCATTTTTGTGGC+GGG - chr3_2:87882393-87882412 None:intergenic 60.0%
CGGATCTTACGAGGACGGAG+GGG - chr3_2:87882408-87882427 None:intergenic 60.0%
CCAACCAATTCCACCACCGC+CGG + chr3_2:87882480-87882499 Msa0434860:CDS 60.0%
! GTTGGATTTTCCGGCGGTGG+TGG - chr3_2:87882493-87882512 None:intergenic 60.0%
! TCCGTTGGATTTTCCGGCGG+TGG - chr3_2:87882496-87882515 None:intergenic 60.0%
! CCGTCCGTTGGATTTTCCGG+CGG - chr3_2:87882499-87882518 None:intergenic 60.0%
CCGCCGGAAAATCCAACGGA+CGG + chr3_2:87882496-87882515 Msa0434860:CDS 60.0%
AGAGTGGGTCTGCGGTACGA+AGG - chr3_2:87882626-87882645 None:intergenic 60.0%
CTTGCCTCGGCCATCTCAGA+TGG + chr3_2:87883103-87883122 Msa0434860:CDS 60.0%
ACTGCTGCTGCTGTTGCCAC+TGG + chr3_2:87883212-87883231 Msa0434860:CDS 60.0%
GCTGCTGTTGCCACTGGCAA+TGG + chr3_2:87883218-87883237 Msa0434860:CDS 60.0%
CTGCTGCAAGCCATTGCCAG+TGG - chr3_2:87883231-87883250 None:intergenic 60.0%
! TGGCTTGCAGCAGCATGAGC+TGG + chr3_2:87883238-87883257 Msa0434860:CDS 60.0%
! GCTGCTGCTGCTGTTGATGG+TGG - chr3_2:87883265-87883284 None:intergenic 60.0%
CTTGTAGGGCTGCCTGTGCT+TGG + chr3_2:87885741-87885760 Msa0434860:intron 60.0%
TGTAGGGCTGCCTGTGCTTG+GGG + chr3_2:87885743-87885762 Msa0434860:intron 60.0%
TTCGACGGAGTCGACAGCGG+TGG - chr3_2:87882316-87882335 None:intergenic 65.0%
!! CCGGCGGTGGTGGAATTGGT+TGG - chr3_2:87882483-87882502 None:intergenic 65.0%
GCTCTATGCGGCGGTGAAGC+TGG + chr3_2:87882780-87882799 Msa0434860:CDS 65.0%
! GGAGTCGACAGCGGTGGTGG+CGG - chr3_2:87882310-87882329 None:intergenic 70.0%
GACGGAGTCGACAGCGGTGG+TGG - chr3_2:87882313-87882332 None:intergenic 70.0%
!! GCGGGGGCGTTGGTGCGTGA+TGG - chr3_2:87882375-87882394 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87882007 87886211 87882007 ID=Msa0434860;Name=Msa0434860
chr3_2 mRNA 87882007 87886211 87882007 ID=Msa0434860-mRNA-1;Parent=Msa0434860;Name=Msa0434860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|0.33|0.75|0.75|0|0.25|4|323|428
chr3_2 exon 87882007 87882059 87882007 ID=Msa0434860-mRNA-1:exon:25644;Parent=Msa0434860-mRNA-1
chr3_2 exon 87882171 87883339 87882171 ID=Msa0434860-mRNA-1:exon:25645;Parent=Msa0434860-mRNA-1
chr3_2 exon 87883438 87883483 87883438 ID=Msa0434860-mRNA-1:exon:25646;Parent=Msa0434860-mRNA-1
chr3_2 exon 87885748 87886211 87885748 ID=Msa0434860-mRNA-1:exon:25647;Parent=Msa0434860-mRNA-1
chr3_2 five_prime_UTR 87882007 87882059 87882007 ID=Msa0434860-mRNA-1:five_prime_utr;Parent=Msa0434860-mRNA-1
chr3_2 five_prime_UTR 87882171 87882239 87882171 ID=Msa0434860-mRNA-1:five_prime_utr;Parent=Msa0434860-mRNA-1
chr3_2 CDS 87882240 87883339 87882240 ID=Msa0434860-mRNA-1:cds;Parent=Msa0434860-mRNA-1
chr3_2 CDS 87883438 87883483 87883438 ID=Msa0434860-mRNA-1:cds;Parent=Msa0434860-mRNA-1
chr3_2 CDS 87885748 87885888 87885748 ID=Msa0434860-mRNA-1:cds;Parent=Msa0434860-mRNA-1
chr3_2 three_prime_UTR 87885889 87886211 87885889 ID=Msa0434860-mRNA-1:three_prime_utr;Parent=Msa0434860-mRNA-1
Gene Sequence

>Msa0434860

ATGGGCGAAGACGCACAACAACAACCTCAGCCACAACCACAAGGGGTTTCTTCCGACAACACAATCTCCGCCACCACCGCTGTCGACTCCGTCGAAACTATTATCCCCGTAGAATCCGAACTGAGCAATGTTCCATCACGCACCAACGCCCCCGCCACAAAAATGCCCCTCCGTCCTCGTAAGATCCGAAAGGTCTCACCCGACCCAACAACCTCCGAATCTCAATCGGAAACCCTAAAGCCAACCAATTCCACCACCGCCGGAAAATCCAACGGACGGAACAACAAAACGGTTCAACCACCACAACAACGAACCTCAATTGTTCCGAAAATTGTAGCTAGGTCACTTTCGTGCGAAGGTGAAGTTGAGATGGCAATTCGTTACCTTCGTACCGCAGACCCACTCTTATCACCTCTCATCGACATTCATCAACCACCTACGTTTGATAATTTCCAGACTCCATTCCTTGCCCTAACCCGTAGTATCTTGTACCAACAACTCGCTTTTAAAGCCGGTACTTCCATCTATACCCGGTTTATTGCTCTATGCGGCGGTGAAGCTGGTGTTGTTCCTGATAATGTTCTTGCCCTAACTGCTCAACAGCTTCGTCAAATTGGGGTTTCTGGTAGAAAAGCTAGTTATCTTCATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCTATTGTAAATATGGATGATAAATCGCTTTTCACTATGCTTACTATGGTTAATGGGATTGGTTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTGCATAGACCTGATGTTCTTCCGATTAATGATCTTGGTGTTCGGAAAGGGGTTCAGATTCTTTATAATCTAGATGACTTGCCTCGGCCATCTCAGATGGATCAATTATGTGAGAAGTGGAAGCCTTATCGTTCGGTTGCTTCATGGTATATGTGGAGGTTTGTTGAAGCGAAGGGAAGTCCTTCAACTGCTGCTGCTGTTGCCACTGGCAATGGCTTGCAGCAGCATGAGCTGGACCACCATCAACAGCAGCAGCAGCATCAGCATTCACAACAACCAATTATGGATCCTATGAATAACATGTTTAATATGGGATTGCATATGTTGGTGATAATGATGGCTATCTACAACAGCGATCAAGGCTGCCTGTGCTTGGGGACAGTGATAGCTGACAAATTTGAGAAAGTTGTCATCAAGCTTCGCAATCAGACACTCATACTTGACGTTGCAAAGCCATGCCGTTATGCATACTTAAGGATAGATGTTAGCACTGAAACATGA
Protein sequence

>Msa0434860

MGEDAQQQPQPQPQGVSSDNTISATTAVDSVETIIPVESELSNVPSRTNAPATKMPLRPRKIRKVSPDPTTSESQSETLKPTNSTTAGKSNGRNNKTVQPPQQRTSIVPKIVARSLSCEGEVEMAIRYLRTADPLLSPLIDIHQPPTFDNFQTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPDNVLALTAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQLCEKWKPYRSVASWYMWRFVEAKGSPSTAAAVATGNGLQQHELDHHQQQQQHQHSQQPIMDPMNNMFNMGLHMLVIMMAIYNSDQGCLCLGTVIADKFEKVVIKLRNQTLILDVAKPCRYAYLRIDVSTET*