Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523770 | XP_003603947.1 | 80.000 | 70 | 14 | 0 | 1 | 70 | 54 | 123 | 1.58e-27 | 120 |
| Msa0523770 | XP_003603947.1 | 93.603 | 297 | 19 | 0 | 72 | 368 | 2 | 298 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523770 | G7J749 | 80.000 | 70 | 14 | 0 | 1 | 70 | 54 | 123 | 7.55e-28 | 120 |
| Msa0523770 | G7J749 | 93.603 | 297 | 19 | 0 | 72 | 368 | 2 | 298 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0356450 | Msa0523770 | 0.810336 | 1.212693e-50 | -8.615850e-47 |
| Msa0523770 | Msa1368490 | 0.855774 | 5.035574e-62 | -8.615850e-47 |
| Msa0523770 | Msa1383300 | 0.826616 | 2.460395e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523770 | MtrunA17_Chr3g0144751 | 93.603 | 297 | 19 | 0 | 72 | 368 | 2 | 298 | 0.0 | 541 |
| Msa0523770 | MtrunA17_Chr3g0144751 | 80.000 | 70 | 14 | 0 | 1 | 70 | 54 | 123 | 1.45e-31 | 120 |
| Msa0523770 | MtrunA17_Chr3g0144781 | 83.946 | 299 | 42 | 3 | 72 | 368 | 2 | 296 | 1.05e-174 | 487 |
| Msa0523770 | MtrunA17_Chr3g0144781 | 88.889 | 72 | 8 | 0 | 1 | 72 | 56 | 127 | 1.23e-38 | 139 |
| Msa0523770 | MtrunA17_Chr4g0035261 | 58.609 | 302 | 114 | 7 | 74 | 368 | 4 | 301 | 4.33e-105 | 311 |
| Msa0523770 | MtrunA17_Chr4g0035261 | 70.588 | 68 | 20 | 0 | 4 | 71 | 61 | 128 | 7.01e-26 | 105 |
| Msa0523770 | MtrunA17_Chr4g0035251 | 57.333 | 300 | 118 | 6 | 75 | 368 | 8 | 303 | 3.03e-103 | 306 |
| Msa0523770 | MtrunA17_Chr4g0035251 | 69.118 | 68 | 21 | 0 | 4 | 71 | 59 | 126 | 8.95e-25 | 102 |
| Msa0523770 | MtrunA17_Chr4g0035231 | 45.763 | 295 | 152 | 6 | 77 | 368 | 7 | 296 | 8.11e-65 | 207 |
| Msa0523770 | MtrunA17_Chr4g0035231 | 50.704 | 71 | 35 | 0 | 1 | 71 | 55 | 125 | 5.18e-15 | 74.7 |
| Msa0523770 | MtrunA17_Chr4g0035221 | 41.554 | 296 | 163 | 7 | 77 | 368 | 7 | 296 | 9.70e-57 | 187 |
| Msa0523770 | MtrunA17_Chr4g0035221 | 47.887 | 71 | 37 | 0 | 1 | 71 | 55 | 125 | 7.64e-15 | 74.3 |
| Msa0523770 | MtrunA17_Chr8g0370891 | 35.495 | 293 | 174 | 8 | 82 | 367 | 5 | 289 | 2.43e-39 | 141 |
| Msa0523770 | MtrunA17_Chr8g0370921 | 34.237 | 295 | 179 | 8 | 80 | 367 | 18 | 304 | 8.02e-39 | 140 |
| Msa0523770 | MtrunA17_Chr8g0370921 | 47.887 | 71 | 37 | 0 | 1 | 71 | 63 | 133 | 5.87e-14 | 72.0 |
| Msa0523770 | MtrunA17_Chr5g0406411 | 34.237 | 295 | 175 | 9 | 78 | 366 | 2 | 283 | 1.14e-37 | 137 |
| Msa0523770 | MtrunA17_Chr5g0406411 | 44.118 | 68 | 38 | 0 | 4 | 71 | 52 | 119 | 6.66e-12 | 65.5 |
| Msa0523770 | MtrunA17_Chr8g0370901 | 32.872 | 289 | 185 | 7 | 82 | 367 | 5 | 287 | 1.86e-37 | 136 |
| Msa0523770 | MtrunA17_Chr5g0406531 | 33.220 | 295 | 178 | 9 | 80 | 368 | 3 | 284 | 1.48e-36 | 134 |
| Msa0523770 | MtrunA17_Chr5g0406391 | 33.670 | 297 | 174 | 10 | 78 | 366 | 2 | 283 | 1.12e-35 | 131 |
| Msa0523770 | MtrunA17_Chr5g0406421 | 32.542 | 295 | 180 | 9 | 78 | 366 | 2 | 283 | 7.09e-35 | 129 |
| Msa0523770 | MtrunA17_Chr5g0406401 | 32.990 | 291 | 176 | 9 | 82 | 366 | 6 | 283 | 2.27e-34 | 128 |
| Msa0523770 | MtrunA17_Chr5g0406501 | 31.741 | 293 | 182 | 8 | 80 | 366 | 3 | 283 | 3.92e-34 | 127 |
| Msa0523770 | MtrunA17_Chr5g0406501 | 41.176 | 68 | 40 | 0 | 4 | 71 | 51 | 118 | 4.68e-11 | 63.2 |
| Msa0523770 | MtrunA17_Chr5g0406561 | 31.419 | 296 | 186 | 9 | 78 | 366 | 2 | 287 | 1.99e-33 | 125 |
| Msa0523770 | MtrunA17_Chr5g0406561 | 42.857 | 70 | 40 | 0 | 4 | 73 | 52 | 121 | 1.13e-11 | 64.7 |
| Msa0523770 | MtrunA17_Chr5g0406371 | 32.432 | 296 | 177 | 9 | 78 | 366 | 2 | 281 | 2.37e-33 | 125 |
| Msa0523770 | MtrunA17_Chr5g0406511 | 32.432 | 296 | 180 | 10 | 78 | 366 | 2 | 284 | 3.93e-33 | 125 |
| Msa0523770 | MtrunA17_Chr5g0406481 | 32.432 | 296 | 180 | 10 | 78 | 366 | 2 | 284 | 4.22e-33 | 124 |
| Msa0523770 | MtrunA17_Chr5g0406601 | 32.990 | 291 | 176 | 9 | 82 | 366 | 6 | 283 | 1.47e-32 | 123 |
| Msa0523770 | MtrunA17_Chr8g0370881 | 32.414 | 290 | 187 | 7 | 82 | 367 | 5 | 289 | 2.00e-32 | 123 |
| Msa0523770 | MtrunA17_Chr3g0144771 | 77.333 | 75 | 16 | 1 | 72 | 146 | 3 | 76 | 4.92e-32 | 115 |
| Msa0523770 | MtrunA17_Chr5g0406361 | 28.707 | 317 | 203 | 10 | 69 | 367 | 3 | 314 | 1.41e-26 | 107 |
| Msa0523770 | MtrunA17_Chr8g0370861 | 32.877 | 292 | 165 | 9 | 85 | 368 | 15 | 283 | 1.75e-26 | 107 |
| Msa0523770 | MtrunA17_Chr5g0406631 | 30.847 | 295 | 189 | 7 | 85 | 368 | 15 | 305 | 1.46e-20 | 90.9 |
| Msa0523770 | MtrunA17_Chr1g0164671 | 28.916 | 249 | 145 | 7 | 124 | 368 | 6 | 226 | 3.04e-17 | 80.1 |
| Msa0523770 | MtrunA17_Chr5g0406471 | 32.308 | 195 | 114 | 7 | 175 | 366 | 4 | 183 | 7.50e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523770 | AT2G17080.1 | 44.483 | 290 | 129 | 11 | 81 | 368 | 4 | 263 | 2.47e-57 | 187 |
| Msa0523770 | AT2G17080.1 | 49.296 | 71 | 36 | 0 | 1 | 71 | 48 | 118 | 3.23e-13 | 69.3 |
| Msa0523770 | AT2G17070.1 | 40.830 | 289 | 141 | 10 | 81 | 368 | 4 | 263 | 7.93e-54 | 179 |
| Msa0523770 | AT2G17070.1 | 49.296 | 71 | 36 | 0 | 1 | 71 | 48 | 118 | 9.14e-13 | 68.2 |
| Msa0523770 | AT4G35200.1 | 38.596 | 285 | 140 | 11 | 81 | 365 | 4 | 253 | 8.49e-47 | 160 |
| Msa0523770 | AT4G35210.1 | 37.544 | 285 | 140 | 10 | 81 | 365 | 4 | 250 | 2.34e-45 | 156 |
| Msa0523770 | AT4G35690.1 | 31.944 | 288 | 178 | 6 | 85 | 368 | 11 | 284 | 8.68e-37 | 135 |
| Msa0523770 | AT4G35710.1 | 32.292 | 288 | 176 | 7 | 85 | 368 | 11 | 283 | 5.28e-33 | 124 |
| Msa0523770 | AT2G17680.1 | 30.592 | 304 | 171 | 7 | 83 | 367 | 9 | 291 | 9.80e-30 | 116 |
| Msa0523770 | AT3G51400.1 | 34.158 | 202 | 120 | 5 | 170 | 367 | 82 | 274 | 6.17e-22 | 94.7 |
| Msa0523770 | AT4G35720.1 | 29.814 | 322 | 179 | 13 | 82 | 367 | 14 | 324 | 6.22e-21 | 92.8 |
| Msa0523770 | AT4G35680.1 | 30.033 | 303 | 182 | 11 | 85 | 368 | 19 | 310 | 6.94e-16 | 78.2 |
| Msa0523770 | AT1G76240.1 | 27.027 | 296 | 189 | 10 | 83 | 368 | 30 | 308 | 4.86e-15 | 75.5 |
| Msa0523770 | AT1G76210.1 | 27.236 | 246 | 153 | 5 | 124 | 368 | 6 | 226 | 3.49e-14 | 71.6 |
Find 77 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAATTTACCAAGGTTT+TGG | 0.231968 | 3_4:-77224471 | None:intergenic |
| GATTGAGCGACCGTGGAAAT+TGG | 0.275230 | 3_4:-77224042 | None:intergenic |
| TTGATTTGCCATAAGATTGA+TGG | 0.309080 | 3_4:+77224158 | Msa0523770:CDS |
| GATTGGAGGCTTGCGAGATT+TGG | 0.312154 | 3_4:+77219852 | None:intergenic |
| TGACTTTCTCACTACCTTCC+TGG | 0.342138 | 3_4:-77224444 | None:intergenic |
| TAATCAAAGCCACTGTTTGA+TGG | 0.356764 | 3_4:-77224535 | None:intergenic |
| TAGGGAGCAAGAAACTCTTT+TGG | 0.362651 | 3_4:-77224678 | None:intergenic |
| CTCGCAAGCCATCAATCTTA+TGG | 0.373203 | 3_4:-77224166 | None:intergenic |
| ACCTCCCCTTCTTCTTATGA+TGG | 0.377879 | 3_4:-77220049 | None:intergenic |
| CAAAACCTTGGTAAATTTGA+AGG | 0.380407 | 3_4:+77224472 | Msa0523770:CDS |
| AAGGGCTTGAGTTTCTATTC+AGG | 0.382811 | 3_4:+77224840 | Msa0523770:CDS |
| GGGCTGAATTAGCTTGGAAA+TGG | 0.383310 | 3_4:-77224657 | None:intergenic |
| GAAACTCAAGCCCTTCTTCA+AGG | 0.395499 | 3_4:-77224832 | None:intergenic |
| ACAATATTGCAATTTATCTC+CGG | 0.447731 | 3_4:+77224602 | Msa0523770:CDS |
| ATGACTCTGCTTTCTCTAAG+TGG | 0.454759 | 3_4:-77224799 | None:intergenic |
| ACAAACATCTAATAGCCTTA+AGG | 0.458051 | 3_4:-77224291 | None:intergenic |
| AAAATGGGTGAATAATTTGT+TGG | 0.458594 | 3_4:+77219942 | Msa0523770:CDS |
| TTCAATCCATCATAAGAAGA+AGG | 0.459796 | 3_4:+77220043 | Msa0523770:CDS |
| ACACACATCTAAGAGTCTTA+AGG | 0.469840 | 3_4:-77219971 | None:intergenic |
| TTGCTTCACCATAAGATTGG+AGG | 0.480764 | 3_4:+77219838 | None:intergenic |
| AGATGATGAGGAGGTTTCAC+TGG | 0.482946 | 3_4:-77224135 | None:intergenic |
| CACAATCAAAGTCAAACAGC+TGG | 0.484613 | 3_4:+77224630 | Msa0523770:CDS |
| ATGAGTGGGTGTGGTCTAGA+TGG | 0.496238 | 3_4:-77224071 | None:intergenic |
| TTCACTTTCATCTGCCACTA+GGG | 0.498643 | 3_4:-77224696 | None:intergenic |
| TGCATTCAAGACCTTGAAGA+AGG | 0.505538 | 3_4:+77224821 | Msa0523770:CDS |
| CAATATTGCAATTTATCTCC+GGG | 0.509648 | 3_4:+77224603 | Msa0523770:CDS |
| AAATGAGGTAAATAACCTCT+TGG | 0.511160 | 3_4:+77224262 | Msa0523770:CDS |
| TTAAGAAGTTCTTGACATCC+AGG | 0.514029 | 3_4:+77224426 | Msa0523770:CDS |
| CTTATTACAAGATGTTGAAG+TGG | 0.514690 | 3_4:+77224559 | Msa0523770:CDS |
| CATAAGAAGAAGCAAAAGAA+GGG | 0.516921 | 3_4:+77224373 | Msa0523770:CDS |
| TGACTTTGATTGTGTTGTCC+CGG | 0.517922 | 3_4:-77224621 | None:intergenic |
| TCAATCCATCATAAGAAGAA+GGG | 0.520989 | 3_4:+77220044 | Msa0523770:CDS |
| ATTCACTTTCATCTGCCACT+AGG | 0.522731 | 3_4:-77224697 | None:intergenic |
| ACCTCTTGGATGGATCCTTA+AGG | 0.522922 | 3_4:+77224276 | Msa0523770:CDS |
| AGAAGTGCATCTTGTGTTAG+TGG | 0.525041 | 3_4:-77224224 | None:intergenic |
| GAGGTAAATAACCTCTTGGA+TGG | 0.528408 | 3_4:+77224266 | Msa0523770:CDS |
| TTTCTTGATGCTTATGGACA+AGG | 0.531977 | 3_4:-77219921 | None:intergenic |
| AAAACCTTGGTAAATTTGAA+GGG | 0.535899 | 3_4:+77224473 | Msa0523770:CDS |
| CATTCAAGAATGAGTGGGTG+TGG | 0.537148 | 3_4:-77224080 | None:intergenic |
| TATTGTCTGAAATGTGGATA+GGG | 0.541099 | 3_4:-77224585 | None:intergenic |
| AACTCAAAATCCAATTTCCA+CGG | 0.542254 | 3_4:+77224032 | Msa0523770:CDS |
| TGGGTGAATAATTTGTTGGA+TGG | 0.545300 | 3_4:+77219946 | Msa0523770:CDS |
| TCATAAGAAGAAGCAAAAGA+AGG | 0.550800 | 3_4:+77224372 | Msa0523770:CDS |
| ACTGCAATGCTCCATCCACT+TGG | 0.550952 | 3_4:-77224724 | None:intergenic |
| TTCTTGATGCTTATGGACAA+GGG | 0.556357 | 3_4:-77219920 | None:intergenic |
| ACATGAGCATCAAGAAAATG+AGG | 0.563141 | 3_4:+77224247 | Msa0523770:CDS |
| ACAATCAAAGTCAAACAGCT+GGG | 0.571866 | 3_4:+77224631 | Msa0523770:CDS |
| AAAGTCAATCTCCAAAACCT+TGG | 0.577340 | 3_4:+77224460 | Msa0523770:CDS |
| AGTGAATTTACCCAAGTGGA+TGG | 0.580307 | 3_4:+77224713 | Msa0523770:CDS |
| ATATTGTCTGAAATGTGGAT+AGG | 0.582878 | 3_4:-77224586 | None:intergenic |
| GATGAGGAGGTTTCACTGGA+AGG | 0.584560 | 3_4:-77224131 | None:intergenic |
| GCATTCAAGACCTTGAAGAA+GGG | 0.589953 | 3_4:+77224822 | Msa0523770:CDS |
| TTCACACAAAAGAATGCACA+AGG | 0.594373 | 3_4:+77220016 | Msa0523770:CDS |
| CAATCCATCATAAGAAGAAG+GGG | 0.598707 | 3_4:+77220045 | Msa0523770:CDS |
| TTGCAATATTGTCTGAAATG+TGG | 0.600026 | 3_4:-77224591 | None:intergenic |
| ACAAGGGCATCTTGAGTGAG+TGG | 0.601239 | 3_4:-77219904 | None:intergenic |
| CAAGGGCATCTTGAGTGAGT+GGG | 0.603726 | 3_4:-77219903 | None:intergenic |
| CTGCAATGCTCCATCCACTT+GGG | 0.606871 | 3_4:-77224723 | None:intergenic |
| TGAAAGTGAATTTACCCAAG+TGG | 0.611145 | 3_4:+77224709 | Msa0523770:CDS |
| ATGGCAAATCAAAGATGATG+AGG | 0.611286 | 3_4:-77224147 | None:intergenic |
| ATTTCCCTTCAAATTTACCA+AGG | 0.616059 | 3_4:-77224477 | None:intergenic |
| GCAAGCTGATTGAGCGACCG+TGG | 0.616949 | 3_4:-77224049 | None:intergenic |
| TCATTACATTCAAGAATGAG+TGG | 0.620570 | 3_4:-77224086 | None:intergenic |
| AAGAGTTTCTTGCTCCCTAG+TGG | 0.621626 | 3_4:+77224682 | Msa0523770:CDS |
| GAAGTTCTTGACATCCAGGA+AGG | 0.624427 | 3_4:+77224430 | Msa0523770:CDS |
| AGAAGCAAAAGAAGGGGATG+CGG | 0.636156 | 3_4:+77224380 | Msa0523770:CDS |
| TTCACACAAGAGAATGCACA+AGG | 0.641744 | 3_4:+77224336 | Msa0523770:CDS |
| GCAAATCAAAGATGATGAGG+AGG | 0.646086 | 3_4:-77224144 | None:intergenic |
| TTCACTGGAAGGTCTTAACA+AGG | 0.653132 | 3_4:-77224120 | None:intergenic |
| CATTACATTCAAGAATGAGT+GGG | 0.654884 | 3_4:-77224085 | None:intergenic |
| ATAAGAAGAAGCAAAAGAAG+GGG | 0.655162 | 3_4:+77224374 | Msa0523770:CDS |
| TCCATCATAAGAAGAAGGGG+AGG | 0.672802 | 3_4:+77220048 | Msa0523770:CDS |
| CAATCAAAGTCAAACAGCTG+GGG | 0.690125 | 3_4:+77224632 | Msa0523770:CDS |
| GCCTTAAGGATCCATCCAAG+AGG | 0.712564 | 3_4:-77224277 | None:intergenic |
| AAACAAAGACCATCAAACAG+TGG | 0.714988 | 3_4:+77224526 | Msa0523770:CDS |
| TCACACAAGAGAATGCACAA+GGG | 0.734454 | 3_4:+77224337 | Msa0523770:CDS |
| TCACACAAAAGAATGCACAA+GGG | 0.740302 | 3_4:+77220017 | Msa0523770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTATATTTTTT+TGG | + | chr3_4:77221291-77221310 | Msa0523770:intron | 0.0% |
| !!! | ATTTTATTTTATATTTTTTT+GGG | + | chr3_4:77221292-77221311 | Msa0523770:intron | 0.0% |
| !!! | GAAAAATAAAAATATTGATT+TGG | - | chr3_4:77220596-77220615 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAATTTACAG+GGG | - | chr3_4:77221146-77221165 | None:intergenic | 10.0% |
| !! | CTAAAAAAAAAAAAATTTAC+AGG | - | chr3_4:77221148-77221167 | None:intergenic | 10.0% |
| !! | TTTATTTCCAAAAAAAAATT+TGG | + | chr3_4:77221891-77221910 | Msa0523770:intron | 10.0% |
| !!! | AAAAATTCCAAATTTTTTTT+TGG | - | chr3_4:77221901-77221920 | None:intergenic | 10.0% |
| !! | ATAAAAATGAAAACAAAAAT+CGG | - | chr3_4:77222071-77222090 | None:intergenic | 10.0% |
| !!! | GTGAAATTTTTTTAAAAAAT+TGG | - | chr3_4:77222102-77222121 | None:intergenic | 10.0% |
| !!! | CTGAAATTTTTTTAAAAAAT+TGG | - | chr3_4:77222266-77222285 | None:intergenic | 10.0% |
| !!! | AAAACAAAAAAATTTTATGA+GGG | + | chr3_4:77222483-77222502 | Msa0523770:intron | 10.0% |
| !! | ATCTAAAAAAAAAAATTTAC+AGG | + | chr3_4:77222510-77222529 | Msa0523770:intron | 10.0% |
| !! | TCTAAAAAAAAAAATTTACA+GGG | + | chr3_4:77222511-77222530 | Msa0523770:intron | 10.0% |
| !! | ATTAAAATGCATTTAACAAA+TGG | + | chr3_4:77220757-77220776 | Msa0523770:intron | 15.0% |
| !!! | AAAACCAAAAAATTTTATGA+GGG | - | chr3_4:77221177-77221196 | None:intergenic | 15.0% |
| !! | CTGAAAATATTAAAAAATTC+TGG | + | chr3_4:77221429-77221448 | Msa0523770:intron | 15.0% |
| !! | TGAAAAAAGTTTAAAAATTC+TGG | + | chr3_4:77221495-77221514 | Msa0523770:intron | 15.0% |
| !!! | CGAAATTTTAATTAAAATTC+TGG | + | chr3_4:77221674-77221693 | Msa0523770:intron | 15.0% |
| !! | TAAAAATTGTGAAAAAATTC+TGG | + | chr3_4:77221727-77221746 | Msa0523770:intron | 15.0% |
| !!! | ATTTTCATTAGTATTTTTTC+CGG | + | chr3_4:77222001-77222020 | Msa0523770:intron | 15.0% |
| !!! | CTCATAAAATTTTTTTGTTT+TGG | - | chr3_4:77222484-77222503 | None:intergenic | 15.0% |
| !!! | CAAAACAAAAAAATTTTATG+AGG | + | chr3_4:77222482-77222501 | Msa0523770:intron | 15.0% |
| !!! | TTTCATCGAATTAATTTTAT+AGG | - | chr3_4:77222585-77222604 | None:intergenic | 15.0% |
| !! | AATATAAAGCAAATAATTAC+AGG | + | chr3_4:77223289-77223308 | Msa0523770:intron | 15.0% |
| !!! | TTTTTATTTTAAAATTCCAC+TGG | + | chr3_4:77223328-77223347 | Msa0523770:intron | 15.0% |
| !!! | TTAAGATTAAAATACGTTTT+CGG | + | chr3_4:77223724-77223743 | Msa0523770:intron | 15.0% |
| !! | TGATATGAAGTATAAACTAA+TGG | + | chr3_4:77220453-77220472 | Msa0523770:intron | 20.0% |
| !! | TTAATTTCGTACCAAAAATT+TGG | - | chr3_4:77220742-77220761 | None:intergenic | 20.0% |
| !!! | CAAAACCAAAAAATTTTATG+AGG | - | chr3_4:77221178-77221197 | None:intergenic | 20.0% |
| !!! | CTCATAAAATTTTTTGGTTT+TGG | + | chr3_4:77221176-77221195 | Msa0523770:intron | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | + | chr3_4:77221925-77221944 | Msa0523770:intron | 20.0% |
| !!! | TTTTCATTAGTATTTTTTCC+GGG | + | chr3_4:77222002-77222021 | Msa0523770:intron | 20.0% |
| !! | TGGCATATAGAAATATAATA+TGG | + | chr3_4:77222741-77222760 | Msa0523770:intron | 20.0% |
| !! | GAAACAAATGAATTTCTAAA+AGG | - | chr3_4:77223001-77223020 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGATAAGAGAAAA+TGG | - | chr3_4:77223223-77223242 | None:intergenic | 20.0% |
| !! | TTCTCTTATCTGAAAAATAA+AGG | + | chr3_4:77223225-77223244 | Msa0523770:intron | 20.0% |
| !! | TGTGAACTTCAATATAATTA+AGG | + | chr3_4:77223414-77223433 | Msa0523770:intron | 20.0% |
| !! | GTGAACTTCAATATAATTAA+GGG | + | chr3_4:77223415-77223434 | Msa0523770:intron | 20.0% |
| !! | TGAACTTCAATATAATTAAG+GGG | + | chr3_4:77223416-77223435 | Msa0523770:intron | 20.0% |
| !! | ACACGTATATTTGATTAAAA+CGG | - | chr3_4:77223529-77223548 | None:intergenic | 20.0% |
| !! | ATGTTAACATGTGTTTAAAT+GGG | + | chr3_4:77223603-77223622 | Msa0523770:intron | 20.0% |
| !! | CAATATATATTATGTGTGTT+AGG | - | chr3_4:77223918-77223937 | None:intergenic | 20.0% |
| !! | AAAATGGGTGAATAATTTGT+TGG | + | chr3_4:77219942-77219961 | Msa0523770:CDS | 25.0% |
| ! | AGTTATTATTACGAGACATA+AGG | + | chr3_4:77220118-77220137 | Msa0523770:intron | 25.0% |
| !! | CATTATTAGGACATTTTCAA+CGG | + | chr3_4:77220246-77220265 | Msa0523770:intron | 25.0% |
| !!! | CATAGTAACATGGATTTTTT+TGG | - | chr3_4:77221010-77221029 | None:intergenic | 25.0% |
| ! | TGTTCAATTTAGCATACATT+CGG | + | chr3_4:77221059-77221078 | Msa0523770:intron | 25.0% |
| ! | ATACATTCGGGAATAAAATA+AGG | + | chr3_4:77221072-77221091 | Msa0523770:intron | 25.0% |
| ! | TACATTCGGGAATAAAATAA+GGG | + | chr3_4:77221073-77221092 | Msa0523770:intron | 25.0% |
| ! | TTAATATATATGTCGAGCTT+AGG | + | chr3_4:77221855-77221874 | Msa0523770:intron | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | + | chr3_4:77221924-77221943 | Msa0523770:intron | 25.0% |
| !!! | CATATTTTTTCCCTTATTCT+CGG | - | chr3_4:77221938-77221957 | None:intergenic | 25.0% |
| !! | ACAAAAAAATTTTATGAGGG+TGG | + | chr3_4:77222486-77222505 | Msa0523770:intron | 25.0% |
| ! | TTGTAATAATCATTACAGCT+AGG | + | chr3_4:77222618-77222637 | Msa0523770:intron | 25.0% |
| ! | ATTCAATTATTAGATCACGA+TGG | + | chr3_4:77222648-77222667 | Msa0523770:intron | 25.0% |
| !! | ATTTCTATATGCCATGTTTT+GGG | - | chr3_4:77222735-77222754 | None:intergenic | 25.0% |
| !!! | TATTTCTATATGCCATGTTT+TGG | - | chr3_4:77222736-77222755 | None:intergenic | 25.0% |
| !! | TACAAAGTATGAGATTTTGA+TGG | + | chr3_4:77222831-77222850 | Msa0523770:intron | 25.0% |
| ! | TGGTTATTAACAACATGATT+TGG | + | chr3_4:77222851-77222870 | Msa0523770:intron | 25.0% |
| ! | GGTTATTAACAACATGATTT+GGG | + | chr3_4:77222852-77222871 | Msa0523770:intron | 25.0% |
| ! | TGAAATTTCTCAATAGATGA+AGG | + | chr3_4:77222940-77222959 | Msa0523770:intron | 25.0% |
| ! | AATTCATTTGTTTCAGATTC+TGG | + | chr3_4:77223007-77223026 | Msa0523770:intron | 25.0% |
| ! | TAAACACATGTTAACATCAA+TGG | - | chr3_4:77223600-77223619 | None:intergenic | 25.0% |
| ! | GATGTTAACATGTGTTTAAA+TGG | + | chr3_4:77223602-77223621 | Msa0523770:intron | 25.0% |
| ! | ATCTTAATGACATATCAATG+AGG | - | chr3_4:77223879-77223898 | None:intergenic | 25.0% |
| ! | CAAATCAACATTCAACATTA+AGG | + | chr3_4:77223961-77223980 | Msa0523770:intron | 25.0% |
| !!! | CCATTTTTTTTCTTTGGTTA+AGG | - | chr3_4:77223998-77224017 | None:intergenic | 25.0% |
| ! | CCTTAACCAAAGAAAAAAAA+TGG | + | chr3_4:77223995-77224014 | Msa0523770:intron | 25.0% |
| !!! | AAATTGGATTTTGAGTTCAA+AGG | - | chr3_4:77224029-77224048 | None:intergenic | 25.0% |
| ! | AAAACCTTGGTAAATTTGAA+GGG | + | chr3_4:77224473-77224492 | Msa0523770:CDS | 25.0% |
| !! | AGATAAGATGTTGCAATTTT+TGG | - | chr3_4:77224504-77224523 | None:intergenic | 25.0% |
| ! | ACAATATTGCAATTTATCTC+CGG | + | chr3_4:77224602-77224621 | Msa0523770:CDS | 25.0% |
| TCCATAAGCATCAAGAAAAA+TGG | + | chr3_4:77219926-77219945 | Msa0523770:CDS | 30.0% | |
| CCATAAGCATCAAGAAAAAT+GGG | + | chr3_4:77219927-77219946 | Msa0523770:CDS | 30.0% | |
| TTCAATCCATCATAAGAAGA+AGG | + | chr3_4:77220043-77220062 | Msa0523770:CDS | 30.0% | |
| TCAATCCATCATAAGAAGAA+GGG | + | chr3_4:77220044-77220063 | Msa0523770:CDS | 30.0% | |
| TAAACACGTATGAATCAATG+AGG | + | chr3_4:77220155-77220174 | Msa0523770:intron | 30.0% | |
| !! | TAAACTAATGGATTGCATTG+TGG | + | chr3_4:77220465-77220484 | Msa0523770:intron | 30.0% |
| !!! | ATTGTGGATTTTGGAACAAA+AGG | + | chr3_4:77220481-77220500 | Msa0523770:intron | 30.0% |
| ATTTATAAAAGATAGCCACG+AGG | + | chr3_4:77220515-77220534 | Msa0523770:intron | 30.0% | |
| TTTATAAAAGATAGCCACGA+GGG | + | chr3_4:77220516-77220535 | Msa0523770:intron | 30.0% | |
| TTTGGTCACCGAAAAAAAAA+AGG | - | chr3_4:77220724-77220743 | None:intergenic | 30.0% | |
| !! | TTTTTCGGTGACCAAATTTT+TGG | + | chr3_4:77220728-77220747 | Msa0523770:intron | 30.0% |
| TTCAATGTGATCATAAGTGT+CGG | + | chr3_4:77220852-77220871 | Msa0523770:intron | 30.0% | |
| CTCTATATCACATAGTAACA+TGG | - | chr3_4:77221020-77221039 | None:intergenic | 30.0% | |
| GTTCAATTTAGCATACATTC+GGG | + | chr3_4:77221060-77221079 | Msa0523770:intron | 30.0% | |
| AAAAGTGACCTATATTACAG+GGG | - | chr3_4:77222543-77222562 | None:intergenic | 30.0% | |
| CAAAAGTGACCTATATTACA+GGG | - | chr3_4:77222542-77222561 | None:intergenic | 30.0% | |
| !!! | CTGTAATATAGGTCACTTTT+GGG | + | chr3_4:77221115-77221134 | Msa0523770:intron | 30.0% |
| !!! | TCCACCCTCATAAAATTTTT+TGG | + | chr3_4:77221170-77221189 | Msa0523770:intron | 30.0% |
| ! | ACCAAAAAATTTTATGAGGG+TGG | - | chr3_4:77221174-77221193 | None:intergenic | 30.0% |
| TGTATTTATAAACCGAGCTT+AGG | + | chr3_4:77221958-77221977 | Msa0523770:intron | 30.0% | |
| !!! | CTGTAATATAGGTCACTTTT+GGG | - | chr3_4:77221115-77221134 | None:intergenic | 30.0% |
| CAAAAGTGACCTATATTACA+GGG | + | chr3_4:77222542-77222561 | Msa0523770:intron | 30.0% | |
| ! | TCTTTTAGTCCCTGTAATAT+AGG | - | chr3_4:77222554-77222573 | None:intergenic | 30.0% |
| CAATTATTCAACGTTTGTAG+AGG | + | chr3_4:77222699-77222718 | Msa0523770:intron | 30.0% | |
| ! | TTAACAACATGATTTGGGTT+TGG | + | chr3_4:77222857-77222876 | Msa0523770:intron | 30.0% |
| !!! | AGGAAAACTCTGGTTTTAAA+AGG | + | chr3_4:77222892-77222911 | Msa0523770:intron | 30.0% |
| !!! | TGTTGATCAATTTTTAGCAG+TGG | + | chr3_4:77223069-77223088 | Msa0523770:intron | 30.0% |
| AGCTTAACTAATGATACAGT+AGG | + | chr3_4:77223121-77223140 | Msa0523770:intron | 30.0% | |
| GCTTAACTAATGATACAGTA+GGG | + | chr3_4:77223122-77223141 | Msa0523770:intron | 30.0% | |
| TCTGAAAAATAAAGGTGACT+AGG | + | chr3_4:77223233-77223252 | Msa0523770:intron | 30.0% | |
| !! | GATATCATTGACTTCTTCAT+AGG | - | chr3_4:77223578-77223597 | None:intergenic | 30.0% |
| AAATGAGACAGATTATGAGT+TGG | + | chr3_4:77223781-77223800 | Msa0523770:intron | 30.0% | |
| AATGAGACAGATTATGAGTT+GGG | + | chr3_4:77223782-77223801 | Msa0523770:intron | 30.0% | |
| ATTATGTCTGAATCCAAATC+TGG | + | chr3_4:77223844-77223863 | Msa0523770:intron | 30.0% | |
| !! | TGAATGTTGATTTGAGTCTA+TGG | - | chr3_4:77223955-77223974 | None:intergenic | 30.0% |
| AACTCAAAATCCAATTTCCA+CGG | + | chr3_4:77224032-77224051 | Msa0523770:CDS | 30.0% | |
| CATTACATTCAAGAATGAGT+GGG | - | chr3_4:77224088-77224107 | None:intergenic | 30.0% | |
| TCATTACATTCAAGAATGAG+TGG | - | chr3_4:77224089-77224108 | None:intergenic | 30.0% | |
| !! | TTGATTTGCCATAAGATTGA+TGG | + | chr3_4:77224158-77224177 | Msa0523770:CDS | 30.0% |
| AAATGAGGTAAATAACCTCT+TGG | + | chr3_4:77224262-77224281 | Msa0523770:CDS | 30.0% | |
| ! | ACAAACATCTAATAGCCTTA+AGG | - | chr3_4:77224294-77224313 | None:intergenic | 30.0% |
| ! | TCTTTTGCTTCTTCTTATGA+GGG | - | chr3_4:77224372-77224391 | None:intergenic | 30.0% |
| ! | TTCTTTTGCTTCTTCTTATG+AGG | - | chr3_4:77224373-77224392 | None:intergenic | 30.0% |
| TCATAAGAAGAAGCAAAAGA+AGG | + | chr3_4:77224372-77224391 | Msa0523770:CDS | 30.0% | |
| CATAAGAAGAAGCAAAAGAA+GGG | + | chr3_4:77224373-77224392 | Msa0523770:CDS | 30.0% | |
| ATAAGAAGAAGCAAAAGAAG+GGG | + | chr3_4:77224374-77224393 | Msa0523770:CDS | 30.0% | |
| ! | CTTCAAATTTACCAAGGTTT+TGG | - | chr3_4:77224474-77224493 | None:intergenic | 30.0% |
| CAAAACCTTGGTAAATTTGA+AGG | + | chr3_4:77224472-77224491 | Msa0523770:CDS | 30.0% | |
| ATTTCCCTTCAAATTTACCA+AGG | - | chr3_4:77224480-77224499 | None:intergenic | 30.0% | |
| CTTATTACAAGATGTTGAAG+TGG | + | chr3_4:77224559-77224578 | Msa0523770:CDS | 30.0% | |
| ! | TATTGTCTGAAATGTGGATA+GGG | - | chr3_4:77224588-77224607 | None:intergenic | 30.0% |
| ! | ATATTGTCTGAAATGTGGAT+AGG | - | chr3_4:77224589-77224608 | None:intergenic | 30.0% |
| ! | TTGCAATATTGTCTGAAATG+TGG | - | chr3_4:77224594-77224613 | None:intergenic | 30.0% |
| CAATATTGCAATTTATCTCC+GGG | + | chr3_4:77224603-77224622 | Msa0523770:CDS | 30.0% | |
| TTCTTGATGCTTATGGACAA+GGG | - | chr3_4:77219923-77219942 | None:intergenic | 35.0% | |
| TTTCTTGATGCTTATGGACA+AGG | - | chr3_4:77219924-77219943 | None:intergenic | 35.0% | |
| !! | CCCATTTTTCTTGATGCTTA+TGG | - | chr3_4:77219930-77219949 | None:intergenic | 35.0% |
| !! | TGGGTGAATAATTTGTTGGA+TGG | + | chr3_4:77219946-77219965 | Msa0523770:CDS | 35.0% |
| ACACACATCTAAGAGTCTTA+AGG | - | chr3_4:77219974-77219993 | None:intergenic | 35.0% | |
| TTCACACAAAAGAATGCACA+AGG | + | chr3_4:77220016-77220035 | Msa0523770:CDS | 35.0% | |
| TCACACAAAAGAATGCACAA+GGG | + | chr3_4:77220017-77220036 | Msa0523770:CDS | 35.0% | |
| CAATCCATCATAAGAAGAAG+GGG | + | chr3_4:77220045-77220064 | Msa0523770:CDS | 35.0% | |
| TGTCTCTCACTTGCATTATT+AGG | + | chr3_4:77220233-77220252 | Msa0523770:intron | 35.0% | |
| ATAAAATTCGAGCACGTTGA+TGG | - | chr3_4:77220282-77220301 | None:intergenic | 35.0% | |
| AAGCTAGTTGACACCAAAAT+TGG | + | chr3_4:77220410-77220429 | Msa0523770:intron | 35.0% | |
| AGTTGACACCAAAATTGGTT+AGG | + | chr3_4:77220415-77220434 | Msa0523770:intron | 35.0% | |
| GTTGACACCAAAATTGGTTA+GGG | + | chr3_4:77220416-77220435 | Msa0523770:intron | 35.0% | |
| TTGACACCAAAATTGGTTAG+GGG | + | chr3_4:77220417-77220436 | Msa0523770:intron | 35.0% | |
| !! | ATGGATTGCATTGTGGATTT+TGG | + | chr3_4:77220472-77220491 | Msa0523770:intron | 35.0% |
| TTATAAAAGATAGCCACGAG+GGG | + | chr3_4:77220517-77220536 | Msa0523770:intron | 35.0% | |
| TGCAATGTTGATATGAGTTC+AGG | - | chr3_4:77220618-77220637 | None:intergenic | 35.0% | |
| GAACTCATATCAACATTGCA+TGG | + | chr3_4:77220618-77220637 | Msa0523770:intron | 35.0% | |
| !!! | GCACCAAGCCTTTTTTTTTT+CGG | + | chr3_4:77220713-77220732 | Msa0523770:intron | 35.0% |
| TCACCGAAAAAAAAAAGGCT+TGG | - | chr3_4:77220719-77220738 | None:intergenic | 35.0% | |
| !!! | GTTTTTAGCCCCTGTAATAT+AGG | + | chr3_4:77221104-77221123 | Msa0523770:intron | 35.0% |
| CCAAAAGTGACCTATATTAC+AGG | - | chr3_4:77222541-77222560 | None:intergenic | 35.0% | |
| !! | CCTGTAATATAGGTCACTTT+TGG | + | chr3_4:77221114-77221133 | Msa0523770:intron | 35.0% |
| !!! | ATATAGGTCACTTTTGGGTT+TGG | + | chr3_4:77221120-77221139 | Msa0523770:intron | 35.0% |
| !!! | ATATTTTTTTGGGGTACACG+TGG | + | chr3_4:77221302-77221321 | Msa0523770:intron | 35.0% |
| ATGCACAAAAAACCTAAGCT+CGG | - | chr3_4:77221973-77221992 | None:intergenic | 35.0% | |
| TCGGAATACACAAAAATTCC+CGG | - | chr3_4:77222023-77222042 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTATTCCGAGCTT+AGG | + | chr3_4:77222027-77222046 | Msa0523770:intron | 35.0% |
| !! | CCTGTAATATAGGTCACTTT+TGG | - | chr3_4:77221114-77221133 | None:intergenic | 35.0% |
| CCAAAAGTGACCTATATTAC+AGG | + | chr3_4:77222541-77222560 | Msa0523770:intron | 35.0% | |
| ! | TCTGGTTTAAAGGAAAACTC+TGG | + | chr3_4:77222882-77222901 | Msa0523770:intron | 35.0% |
| TAATCTCAACAACACTGTTG+TGG | - | chr3_4:77223362-77223381 | None:intergenic | 35.0% | |
| ! | ACAACAGTGTTGTTGAGATT+AGG | + | chr3_4:77223361-77223380 | Msa0523770:intron | 35.0% |
| ! | CAACAGTGTTGTTGAGATTA+GGG | + | chr3_4:77223362-77223381 | Msa0523770:intron | 35.0% |
| ATGAGAGTAAACATGGAAAC+TGG | + | chr3_4:77223449-77223468 | Msa0523770:intron | 35.0% | |
| !! | CATTGACTTCTTCATAGGAT+AGG | - | chr3_4:77223573-77223592 | None:intergenic | 35.0% |
| ATGAGACAGATTATGAGTTG+GGG | + | chr3_4:77223783-77223802 | Msa0523770:intron | 35.0% | |
| !! | GAATCCAAATCTGGATTAGT+TGG | + | chr3_4:77223853-77223872 | Msa0523770:intron | 35.0% |
| !!! | AGGCTGCCATTTTTTTTCTT+TGG | - | chr3_4:77224004-77224023 | None:intergenic | 35.0% |
| ATGGCAAATCAAAGATGATG+AGG | - | chr3_4:77224150-77224169 | None:intergenic | 35.0% | |
| GATCGAGTGTGTTGAAAAAT+TGG | + | chr3_4:77224193-77224212 | Msa0523770:CDS | 35.0% | |
| ACATGAGCATCAAGAAAATG+AGG | + | chr3_4:77224247-77224266 | Msa0523770:CDS | 35.0% | |
| TTAAGAAGTTCTTGACATCC+AGG | + | chr3_4:77224426-77224445 | Msa0523770:CDS | 35.0% | |
| AAAGTCAATCTCCAAAACCT+TGG | + | chr3_4:77224460-77224479 | Msa0523770:CDS | 35.0% | |
| AAACAAAGACCATCAAACAG+TGG | + | chr3_4:77224526-77224545 | Msa0523770:CDS | 35.0% | |
| TAATCAAAGCCACTGTTTGA+TGG | - | chr3_4:77224538-77224557 | None:intergenic | 35.0% | |
| ACAATCAAAGTCAAACAGCT+GGG | + | chr3_4:77224631-77224650 | Msa0523770:CDS | 35.0% | |
| TGAAAGTGAATTTACCCAAG+TGG | + | chr3_4:77224709-77224728 | Msa0523770:CDS | 35.0% | |
| GAGGCTAACTAATCGAGATT+TGG | + | chr3_4:77220174-77220193 | Msa0523770:intron | 40.0% | |
| ! | TGTCATCCCCTAACCAATTT+TGG | - | chr3_4:77220426-77220445 | None:intergenic | 40.0% |
| AAATTGGTTAGGGGATGACA+TGG | + | chr3_4:77220426-77220445 | Msa0523770:intron | 40.0% | |
| CAAATGGCATTTGTGAAGCA+CGG | + | chr3_4:77220773-77220792 | Msa0523770:intron | 40.0% | |
| !! | TTTTGATTGAAGGCGTGTCT+CGG | - | chr3_4:77220887-77220906 | None:intergenic | 40.0% |
| !! | GCACATGCACTTTTGATTGA+AGG | - | chr3_4:77220897-77220916 | None:intergenic | 40.0% |
| !! | AAAGATTCTGCTGACTCAAG+GGG | - | chr3_4:77222444-77222463 | None:intergenic | 40.0% |
| !! | CAAAGATTCTGCTGACTCAA+GGG | - | chr3_4:77222443-77222462 | None:intergenic | 40.0% |
| !! | TCAAAGATTCTGCTGACTCA+AGG | - | chr3_4:77222442-77222461 | None:intergenic | 40.0% |
| CTTGTCATTCAACCTAAGCT+CGG | - | chr3_4:77222042-77222061 | None:intergenic | 40.0% | |
| !! | AAAGATTCTGCTGACTCAAG+TGG | + | chr3_4:77222444-77222463 | Msa0523770:intron | 40.0% |
| !! | AAGATTCTGCTGACTCAAGT+GGG | + | chr3_4:77222445-77222464 | Msa0523770:intron | 40.0% |
| GTTCATTCTGACCCAAAACA+TGG | + | chr3_4:77222721-77222740 | Msa0523770:intron | 40.0% | |
| GCATGTGATGAGAGTAAACA+TGG | + | chr3_4:77223442-77223461 | Msa0523770:intron | 40.0% | |
| AAACTGGATCATGTGTCTGT+AGG | + | chr3_4:77223465-77223484 | Msa0523770:intron | 40.0% | |
| TCTTCATAGGATAGGAGTTG+AGG | - | chr3_4:77223565-77223584 | None:intergenic | 40.0% | |
| ATTGTTAGGCATGTCTCTGT+TGG | - | chr3_4:77223648-77223667 | None:intergenic | 40.0% | |
| GCAACAACTGCAGTATTGTT+AGG | - | chr3_4:77223662-77223681 | None:intergenic | 40.0% | |
| ! | CAATACTGCAGTTGTTGCTT+TGG | + | chr3_4:77223664-77223683 | Msa0523770:intron | 40.0% |
| CAGTACTACACATGTGCAAA+TGG | + | chr3_4:77223695-77223714 | Msa0523770:intron | 40.0% | |
| !!! | GGATTTTGAGTTCAAAGGAG+AGG | - | chr3_4:77224024-77224043 | None:intergenic | 40.0% |
| TTCACTGGAAGGTCTTAACA+AGG | - | chr3_4:77224123-77224142 | None:intergenic | 40.0% | |
| GCAAATCAAAGATGATGAGG+AGG | - | chr3_4:77224147-77224166 | None:intergenic | 40.0% | |
| ! | AGAAGTGCATCTTGTGTTAG+TGG | - | chr3_4:77224227-77224246 | None:intergenic | 40.0% |
| GAGGTAAATAACCTCTTGGA+TGG | + | chr3_4:77224266-77224285 | Msa0523770:CDS | 40.0% | |
| TGACTTTGATTGTGTTGTCC+CGG | - | chr3_4:77224624-77224643 | None:intergenic | 40.0% | |
| CACAATCAAAGTCAAACAGC+TGG | + | chr3_4:77224630-77224649 | Msa0523770:CDS | 40.0% | |
| CAATCAAAGTCAAACAGCTG+GGG | + | chr3_4:77224632-77224651 | Msa0523770:CDS | 40.0% | |
| ! | TCTTTTGGGCTGAATTAGCT+TGG | - | chr3_4:77224666-77224685 | None:intergenic | 40.0% |
| ! | AGGGAGCAAGAAACTCTTTT+GGG | - | chr3_4:77224680-77224699 | None:intergenic | 40.0% |
| ! | TAGGGAGCAAGAAACTCTTT+TGG | - | chr3_4:77224681-77224700 | None:intergenic | 40.0% |
| TTCACTTTCATCTGCCACTA+GGG | - | chr3_4:77224699-77224718 | None:intergenic | 40.0% | |
| ATTCACTTTCATCTGCCACT+AGG | - | chr3_4:77224700-77224719 | None:intergenic | 40.0% | |
| AGTGAATTTACCCAAGTGGA+TGG | + | chr3_4:77224713-77224732 | Msa0523770:CDS | 40.0% | |
| !! | GGCTTCAAGTTTTCTAGTCT+TGG | - | chr3_4:77224762-77224781 | None:intergenic | 40.0% |
| !! | GTGGTTTTGCAGATCATTGA+TGG | - | chr3_4:77224783-77224802 | None:intergenic | 40.0% |
| ATGACTCTGCTTTCTCTAAG+TGG | - | chr3_4:77224802-77224821 | None:intergenic | 40.0% | |
| TGCATTCAAGACCTTGAAGA+AGG | + | chr3_4:77224821-77224840 | Msa0523770:CDS | 40.0% | |
| GCATTCAAGACCTTGAAGAA+GGG | + | chr3_4:77224822-77224841 | Msa0523770:CDS | 40.0% | |
| AAGGGCTTGAGTTTCTATTC+AGG | + | chr3_4:77224840-77224859 | Msa0523770:CDS | 40.0% | |
| TCCATCATAAGAAGAAGGGG+AGG | + | chr3_4:77220048-77220067 | Msa0523770:CDS | 45.0% | |
| ACCTCCCCTTCTTCTTATGA+TGG | - | chr3_4:77220052-77220071 | None:intergenic | 45.0% | |
| ATCATAAGAAGAAGGGGAGG+TGG | + | chr3_4:77220051-77220070 | Msa0523770:intron | 45.0% | |
| TGCTCTTTAATTACCCCTCG+TGG | - | chr3_4:77220533-77220552 | None:intergenic | 45.0% | |
| CTGACACAAACACGTCAACA+CGG | + | chr3_4:77220804-77220823 | Msa0523770:intron | 45.0% | |
| !! | GTGATCATAAGTGTCGGTGT+CGG | + | chr3_4:77220858-77220877 | Msa0523770:intron | 45.0% |
| ! | CAAAAGTGCATGTGCAACAG+AGG | + | chr3_4:77220902-77220921 | Msa0523770:intron | 45.0% |
| !! | AAGATTCTGCTGACTCAAGG+GGG | - | chr3_4:77221215-77221234 | None:intergenic | 45.0% |
| AGTCAGCAGAATCTTTGACG+TGG | + | chr3_4:77221220-77221239 | Msa0523770:intron | 45.0% | |
| GCGTGACACGTCATCAAAAA+AGG | - | chr3_4:77221258-77221277 | None:intergenic | 45.0% | |
| ! | CATGATTTGGGTTTGGCTTC+TGG | + | chr3_4:77222864-77222883 | Msa0523770:intron | 45.0% |
| !! | GGGTTTGGCTTCTGGTTTAA+AGG | + | chr3_4:77222872-77222891 | Msa0523770:intron | 45.0% |
| GCTGCATCTGCAAAGATTGA+AGG | - | chr3_4:77223104-77223123 | None:intergenic | 45.0% | |
| ! | CGACTATGCAGAGAGCTTTT+GGG | + | chr3_4:77223177-77223196 | Msa0523770:intron | 45.0% |
| ! | TATGAGTTGGGGAGATTCCT+TGG | + | chr3_4:77223794-77223813 | Msa0523770:intron | 45.0% |
| ! | ATGAGTTGGGGAGATTCCTT+GGG | + | chr3_4:77223795-77223814 | Msa0523770:intron | 45.0% |
| GAGGCCAACTAATCCAGATT+TGG | - | chr3_4:77223860-77223879 | None:intergenic | 45.0% | |
| TATGTGTGTTAGGCGACACA+AGG | - | chr3_4:77223908-77223927 | None:intergenic | 45.0% | |
| CATTCAAGAATGAGTGGGTG+TGG | - | chr3_4:77224083-77224102 | None:intergenic | 45.0% | |
| AGATGATGAGGAGGTTTCAC+TGG | - | chr3_4:77224138-77224157 | None:intergenic | 45.0% | |
| CTCGCAAGCCATCAATCTTA+TGG | - | chr3_4:77224169-77224188 | None:intergenic | 45.0% | |
| ACCTCTTGGATGGATCCTTA+AGG | + | chr3_4:77224276-77224295 | Msa0523770:CDS | 45.0% | |
| AGAAGCAAAAGAAGGGGATG+CGG | + | chr3_4:77224380-77224399 | Msa0523770:CDS | 45.0% | |
| GAAGTTCTTGACATCCAGGA+AGG | + | chr3_4:77224430-77224449 | Msa0523770:CDS | 45.0% | |
| TGACTTTCTCACTACCTTCC+TGG | - | chr3_4:77224447-77224466 | None:intergenic | 45.0% | |
| ! | GGGCTGAATTAGCTTGGAAA+TGG | - | chr3_4:77224660-77224679 | None:intergenic | 45.0% |
| AAGAGTTTCTTGCTCCCTAG+TGG | + | chr3_4:77224682-77224701 | Msa0523770:CDS | 45.0% | |
| GAAACTCAAGCCCTTCTTCA+AGG | - | chr3_4:77224835-77224854 | None:intergenic | 45.0% | |
| !!! | AAAAATAAAAATATTGATTT+GGG | - | chr3_4:77220595-77220614 | None:intergenic | 5.0% |
| !! | TAAAAAAAAAAAAATTTACA+GGG | - | chr3_4:77221147-77221166 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATATTTTTTTG+GGG | + | chr3_4:77221293-77221312 | Msa0523770:intron | 5.0% |
| !! | TTTAAAAAATTAAAAAATTC+TGG | + | chr3_4:77221349-77221368 | Msa0523770:intron | 5.0% |
| !!! | AGAATTTTTTTATTAATTTT+CGG | - | chr3_4:77221411-77221430 | None:intergenic | 5.0% |
| !! | CAAGGGCATCTTGAGTGAGT+GGG | - | chr3_4:77219906-77219925 | None:intergenic | 50.0% |
| !! | ACAAGGGCATCTTGAGTGAG+TGG | - | chr3_4:77219907-77219926 | None:intergenic | 50.0% |
| AAGAAGAAGGGGAGGTGGAT+TGG | + | chr3_4:77220056-77220075 | Msa0523770:intron | 50.0% | |
| ! | TGGATTGGAGCTCACAGTTG+AGG | + | chr3_4:77220071-77220090 | Msa0523770:intron | 50.0% |
| GCTAGTCGTGTCTCTCTTAG+AGG | + | chr3_4:77220344-77220363 | Msa0523770:intron | 50.0% | |
| AGTGCATGTGCAACAGAGGT+TGG | + | chr3_4:77220906-77220925 | Msa0523770:intron | 50.0% | |
| AATCTTTGACGTGACGCACG+TGG | - | chr3_4:77222431-77222450 | None:intergenic | 50.0% | |
| TACAGTAGGGTGTGTTGCAG+AGG | + | chr3_4:77223135-77223154 | Msa0523770:intron | 50.0% | |
| ACAGTAGGGTGTGTTGCAGA+GGG | + | chr3_4:77223136-77223155 | Msa0523770:intron | 50.0% | |
| TTGCAGAGGGTAAGCTGTTG+CGG | + | chr3_4:77223149-77223168 | Msa0523770:intron | 50.0% | |
| ! | GCGACTATGCAGAGAGCTTT+TGG | + | chr3_4:77223176-77223195 | Msa0523770:intron | 50.0% |
| TGTTGTGGTAGCACTACCAG+TGG | - | chr3_4:77223347-77223366 | None:intergenic | 50.0% | |
| GTTAGGCATGTCTCTGTTGG+AGG | - | chr3_4:77223645-77223664 | None:intergenic | 50.0% | |
| ! | TGAGTTGGGGAGATTCCTTG+GGG | + | chr3_4:77223796-77223815 | Msa0523770:intron | 50.0% |
| GATTGAGCGACCGTGGAAAT+TGG | - | chr3_4:77224045-77224064 | None:intergenic | 50.0% | |
| ATGAGTGGGTGTGGTCTAGA+TGG | - | chr3_4:77224074-77224093 | None:intergenic | 50.0% | |
| GATGAGGAGGTTTCACTGGA+AGG | - | chr3_4:77224134-77224153 | None:intergenic | 50.0% | |
| GCCTTAAGGATCCATCCAAG+AGG | - | chr3_4:77224280-77224299 | None:intergenic | 50.0% | |
| CTGCAATGCTCCATCCACTT+GGG | - | chr3_4:77224726-77224745 | None:intergenic | 50.0% | |
| ACTGCAATGCTCCATCCACT+TGG | - | chr3_4:77224727-77224746 | None:intergenic | 50.0% | |
| !! | TCTGCTGACTCAAGTGGGTC+AGG | + | chr3_4:77222450-77222469 | Msa0523770:intron | 55.0% |
| !! | CTGCTGACTCAAGTGGGTCA+GGG | + | chr3_4:77222451-77222470 | Msa0523770:intron | 55.0% |
| !! | TGCTGACTCAAGTGGGTCAG+GGG | + | chr3_4:77222452-77222471 | Msa0523770:intron | 55.0% |
| GAGTTGGGGAGATTCCTTGG+GGG | + | chr3_4:77223797-77223816 | Msa0523770:intron | 55.0% | |
| GAGATTCCTTGGGGGAGACA+AGG | + | chr3_4:77223805-77223824 | Msa0523770:intron | 55.0% | |
| ! | TTAGAGCCTTGTCTCCCCCA+AGG | - | chr3_4:77223814-77223833 | None:intergenic | 55.0% |
| !! | TGCTGACTCAAGGGGGTCAG+GGG | - | chr3_4:77221208-77221227 | None:intergenic | 60.0% |
| !! | CTGCTGACTCAAGGGGGTCA+GGG | - | chr3_4:77221209-77221228 | None:intergenic | 60.0% |
| !! | TCTGCTGACTCAAGGGGGTC+AGG | - | chr3_4:77221210-77221229 | None:intergenic | 60.0% |
| GCAAGCTGATTGAGCGACCG+TGG | - | chr3_4:77224052-77224071 | None:intergenic | 60.0% | |
| GAGGGTAAGCTGTTGCGGCG+AGG | + | chr3_4:77223154-77223173 | Msa0523770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77219853 | 77224910 | 77219853 | ID=Msa0523770;Name=Msa0523770 |
| chr3_4 | mRNA | 77219853 | 77224910 | 77219853 | ID=Msa0523770-mRNA-1;Parent=Msa0523770;Name=Msa0523770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|2|0|368 |
| chr3_4 | exon | 77219853 | 77220069 | 77219853 | ID=Msa0523770-mRNA-1:exon:22598;Parent=Msa0523770-mRNA-1 |
| chr3_4 | exon | 77224021 | 77224910 | 77224021 | ID=Msa0523770-mRNA-1:exon:22599;Parent=Msa0523770-mRNA-1 |
| chr3_4 | CDS | 77219853 | 77220069 | 77219853 | ID=Msa0523770-mRNA-1:cds;Parent=Msa0523770-mRNA-1 |
| chr3_4 | CDS | 77224021 | 77224910 | 77224021 | ID=Msa0523770-mRNA-1:cds;Parent=Msa0523770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
