Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356450 | XP_013459385.1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 1.98e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356450 | sp|F4JCN9|PRE4_ARATH | 72.043 | 93 | 24 | 2 | 1 | 92 | 1 | 92 | 1.56e-37 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356450 | I3STA1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 9.47e-56 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0356450 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa0356450 | 0.809883 | 1.518020e-50 | -8.615850e-47 |
| Msa0118660 | Msa0356450 | 0.801778 | 7.668523e-49 | -8.615850e-47 |
| Msa0163340 | Msa0356450 | 0.804389 | 2.211998e-49 | -8.615850e-47 |
| Msa0356450 | Msa0523770 | 0.810336 | 1.212693e-50 | -8.615850e-47 |
| Msa0356450 | Msa0727480 | 0.803526 | 3.341901e-49 | -8.615850e-47 |
| Msa0356450 | Msa0777250 | 0.814047 | 1.879473e-51 | -8.615850e-47 |
| Msa0356450 | Msa0814230 | 0.819354 | 1.213805e-52 | -8.615850e-47 |
| Msa0356450 | Msa0910830 | 0.810744 | 9.899430e-51 | -8.615850e-47 |
| Msa0356450 | Msa0913550 | 0.824369 | 8.378603e-54 | -8.615850e-47 |
| Msa0356450 | Msa0951150 | 0.828936 | 6.812131e-55 | -8.615850e-47 |
| Msa0356450 | Msa0987640 | 0.838031 | 3.660305e-57 | -8.615850e-47 |
| Msa0356450 | Msa1021620 | 0.818065 | 2.380480e-52 | -8.615850e-47 |
| Msa0356450 | Msa1022580 | 0.829754 | 4.312927e-55 | -8.615850e-47 |
| Msa0356450 | Msa1149020 | 0.816029 | 6.824704e-52 | -8.615850e-47 |
| Msa0356450 | Msa1150150 | 0.825391 | 4.808536e-54 | -8.615850e-47 |
| Msa0356450 | Msa1269050 | 0.806402 | 8.371050e-50 | -8.615850e-47 |
| Msa0356450 | Msa1323120 | 0.808922 | 2.441370e-50 | -8.615850e-47 |
| Msa0356450 | Msa1368490 | 0.843347 | 1.481940e-58 | -8.615850e-47 |
| Msa0356450 | Msa1383300 | 0.823704 | 1.200045e-53 | -8.615850e-47 |
| Msa0356450 | Msa1445900 | 0.812282 | 4.584729e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356450 | MtrunA17_Chr3g0093001 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 1.82e-59 | 176 |
| Msa0356450 | MtrunA17_Chr7g0217141 | 71.277 | 94 | 24 | 2 | 1 | 92 | 1 | 93 | 4.75e-37 | 120 |
| Msa0356450 | MtrunA17_Chr5g0416431 | 71.429 | 77 | 20 | 1 | 17 | 91 | 17 | 93 | 8.94e-33 | 109 |
| Msa0356450 | MtrunA17_Chr6g0453041 | 71.795 | 78 | 20 | 1 | 17 | 92 | 15 | 92 | 7.44e-32 | 107 |
| Msa0356450 | MtrunA17_Chr8g0362131 | 65.476 | 84 | 26 | 2 | 10 | 91 | 10 | 92 | 1.18e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356450 | AT3G47710.1 | 72.043 | 93 | 24 | 2 | 1 | 92 | 1 | 92 | 1.58e-38 | 124 |
| Msa0356450 | AT1G74500.1 | 76.623 | 77 | 17 | 1 | 17 | 92 | 17 | 93 | 5.15e-35 | 115 |
| Msa0356450 | AT1G26945.1 | 78.378 | 74 | 14 | 1 | 19 | 90 | 19 | 92 | 1.16e-33 | 112 |
| Msa0356450 | AT3G28857.1 | 64.894 | 94 | 28 | 3 | 1 | 91 | 1 | 92 | 1.02e-31 | 107 |
| Msa0356450 | AT5G39860.1 | 67.949 | 78 | 22 | 2 | 17 | 91 | 15 | 92 | 6.36e-29 | 99.8 |
| Msa0356450 | AT5G15160.1 | 65.333 | 75 | 23 | 2 | 19 | 90 | 18 | 92 | 1.23e-26 | 94.0 |
Find 18 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTCAAGGGTGTTGC+GGG | 0.358495 | 3_1:+35406188 | Msa0356450:CDS |
| TGAGCGTTTGTCTGAGCTAT+TGG | 0.392203 | 3_1:+35406260 | Msa0356450:CDS |
| TATATCAGGTTTCAGCTTCA+AGG | 0.403696 | 3_1:+35406178 | Msa0356450:intron |
| ACTATATTAGAAACTTGAAC+AGG | 0.414262 | 3_1:+35406220 | Msa0356450:CDS |
| AGGAAGAAGTTGCTGCAACT+TGG | 0.461097 | 3_1:-35405290 | None:intergenic |
| GAGCTCCTATTGCGAATCTC+AGG | 0.466230 | 3_1:-35405310 | None:intergenic |
| TTCTTCCTGAGATTCGCAAT+AGG | 0.484861 | 3_1:+35405305 | Msa0356450:CDS |
| ATATCAGGTTTCAGCTTCAA+GGG | 0.502020 | 3_1:+35406179 | Msa0356450:intron |
| TTTCAGCTTCAAGGGTGTTG+CGG | 0.507976 | 3_1:+35406187 | Msa0356450:CDS |
| CTAGCAGGAGGTCGCGGTCA+CGG | 0.548676 | 3_1:+35405215 | Msa0356450:CDS |
| GCTCAGACAAACGCTCACTT+AGG | 0.559789 | 3_1:-35406254 | None:intergenic |
| GCAACTTGGAGACAAGATCA+TGG | 0.561243 | 3_1:-35405276 | None:intergenic |
| AGATGTCTAGCAGGAGGTCG+CGG | 0.564343 | 3_1:+35405209 | None:intergenic |
| CACGGCAAACAAGTAGTTCG+AGG | 0.585931 | 3_1:+35405233 | Msa0356450:CDS |
| TCGCAATAGGAGCTCTGACA+AGG | 0.593557 | 3_1:+35405318 | Msa0356450:CDS |
| AAGATCATGGATCTGATCGT+CGG | 0.643584 | 3_1:-35405263 | None:intergenic |
| TTATAAAGATGTCTAGCAGG+AGG | 0.648667 | 3_1:+35405203 | None:intergenic |
| CTATATTAGAAACTTGAACA+GGG | 0.660572 | 3_1:+35406221 | Msa0356450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATAAAAGTCAT+TGG | + | chr3_1:35405471-35405490 | Msa0356450:intron | 10.0% |
| !! | TGTATTAAAAATATAGTATA+TGG | - | chr3_1:35405565-35405584 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTCTTTTCT+TGG | - | chr3_1:35405884-35405903 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATAAAAGTCAT+TGG | + | chr3_1:35405471-35405490 | Msa0356450:intron | 10.0% |
| !! | TGTATTAAAAATATAGTATA+TGG | - | chr3_1:35405565-35405584 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTCTTTTCT+TGG | - | chr3_1:35405884-35405903 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAAAACTTGAA+AGG | + | chr3_1:35405890-35405909 | Msa0356450:intron | 15.0% |
| !!! | AAATTGAATTTTACTATATC+AGG | + | chr3_1:35406164-35406183 | Msa0356450:intron | 15.0% |
| !! | GAAAAAAAAAAAAACTTGAA+AGG | + | chr3_1:35405890-35405909 | Msa0356450:intron | 15.0% |
| !!! | AAATTGAATTTTACTATATC+AGG | + | chr3_1:35406164-35406183 | Msa0356450:intron | 15.0% |
| ! | CTAGGAAACAAATAATATGT+AGG | - | chr3_1:35405350-35405369 | None:intergenic | 25.0% |
| !!! | CTAGTCTTTTGATTAAAACT+AGG | - | chr3_1:35405368-35405387 | None:intergenic | 25.0% |
| !!! | AGAAGAGATTAGTTTTATAG+CGG | + | chr3_1:35405586-35405605 | Msa0356450:intron | 25.0% |
| ! | GATAATGCATAATATATGCA+GGG | + | chr3_1:35405791-35405810 | Msa0356450:intron | 25.0% |
| ! | ATTTAAACCAACTTAATCCT+AGG | + | chr3_1:35405978-35405997 | Msa0356450:intron | 25.0% |
| ! | ACTATATTAGAAACTTGAAC+AGG | + | chr3_1:35406220-35406239 | Msa0356450:CDS | 25.0% |
| ! | CTATATTAGAAACTTGAACA+GGG | + | chr3_1:35406221-35406240 | Msa0356450:CDS | 25.0% |
| ! | CTAGGAAACAAATAATATGT+AGG | - | chr3_1:35405350-35405369 | None:intergenic | 25.0% |
| !!! | CTAGTCTTTTGATTAAAACT+AGG | - | chr3_1:35405368-35405387 | None:intergenic | 25.0% |
| !!! | AGAAGAGATTAGTTTTATAG+CGG | + | chr3_1:35405586-35405605 | Msa0356450:intron | 25.0% |
| ! | GATAATGCATAATATATGCA+GGG | + | chr3_1:35405791-35405810 | Msa0356450:intron | 25.0% |
| ! | ATTTAAACCAACTTAATCCT+AGG | + | chr3_1:35405978-35405997 | Msa0356450:intron | 25.0% |
| ! | ACTATATTAGAAACTTGAAC+AGG | + | chr3_1:35406220-35406239 | Msa0356450:CDS | 25.0% |
| ! | CTATATTAGAAACTTGAACA+GGG | + | chr3_1:35406221-35406240 | Msa0356450:CDS | 25.0% |
| GGATAATGCATAATATATGC+AGG | + | chr3_1:35405790-35405809 | Msa0356450:intron | 30.0% | |
| ACCATACTTATTCACCTTTA+AGG | + | chr3_1:35405835-35405854 | Msa0356450:intron | 30.0% | |
| ACCTTAAAGGTGAATAAGTA+TGG | - | chr3_1:35405839-35405858 | None:intergenic | 30.0% | |
| TACACTAGAGTAAGTATAAG+AGG | + | chr3_1:35405953-35405972 | Msa0356450:intron | 30.0% | |
| ACACTAGAGTAAGTATAAGA+GGG | + | chr3_1:35405954-35405973 | Msa0356450:intron | 30.0% | |
| CAAGAAAAAGGAACAACAAT+AGG | + | chr3_1:35406014-35406033 | Msa0356450:intron | 30.0% | |
| CATCAACAATTCTTGTAGAT+GGG | - | chr3_1:35406089-35406108 | None:intergenic | 30.0% | |
| ACATCAACAATTCTTGTAGA+TGG | - | chr3_1:35406090-35406109 | None:intergenic | 30.0% | |
| GGATAATGCATAATATATGC+AGG | + | chr3_1:35405790-35405809 | Msa0356450:intron | 30.0% | |
| ACCATACTTATTCACCTTTA+AGG | + | chr3_1:35405835-35405854 | Msa0356450:intron | 30.0% | |
| ACCTTAAAGGTGAATAAGTA+TGG | - | chr3_1:35405839-35405858 | None:intergenic | 30.0% | |
| TACACTAGAGTAAGTATAAG+AGG | + | chr3_1:35405953-35405972 | Msa0356450:intron | 30.0% | |
| ACACTAGAGTAAGTATAAGA+GGG | + | chr3_1:35405954-35405973 | Msa0356450:intron | 30.0% | |
| CAAGAAAAAGGAACAACAAT+AGG | + | chr3_1:35406014-35406033 | Msa0356450:intron | 30.0% | |
| CATCAACAATTCTTGTAGAT+GGG | - | chr3_1:35406089-35406108 | None:intergenic | 30.0% | |
| ACATCAACAATTCTTGTAGA+TGG | - | chr3_1:35406090-35406109 | None:intergenic | 30.0% | |
| GAGATACCCTATTAATCTAC+CGG | + | chr3_1:35405630-35405649 | Msa0356450:intron | 35.0% | |
| TGAGCTTAGTTCATTTGGTA+AGG | + | chr3_1:35405768-35405787 | Msa0356450:intron | 35.0% | |
| GAGCTTAGTTCATTTGGTAA+GGG | + | chr3_1:35405769-35405788 | Msa0356450:intron | 35.0% | |
| !! | TTATTCACCTTTAAGGTCTC+TGG | + | chr3_1:35405842-35405861 | Msa0356450:intron | 35.0% |
| ! | TTTCTTGGTCAATTAGCCTA+GGG | - | chr3_1:35405869-35405888 | None:intergenic | 35.0% |
| !! | TTTTCTTGGTCAATTAGCCT+AGG | - | chr3_1:35405870-35405889 | None:intergenic | 35.0% |
| AATAGGCCTAACAAATACGA+GGG | + | chr3_1:35406031-35406050 | Msa0356450:intron | 35.0% | |
| TTAATCCCCTCGTATTTGTT+AGG | - | chr3_1:35406040-35406059 | None:intergenic | 35.0% | |
| TCTTGTAGATGGGAAAAAAC+TGG | - | chr3_1:35406079-35406098 | None:intergenic | 35.0% | |
| TATATCAGGTTTCAGCTTCA+AGG | + | chr3_1:35406178-35406197 | Msa0356450:intron | 35.0% | |
| ATATCAGGTTTCAGCTTCAA+GGG | + | chr3_1:35406179-35406198 | Msa0356450:intron | 35.0% | |
| GAGATACCCTATTAATCTAC+CGG | + | chr3_1:35405630-35405649 | Msa0356450:intron | 35.0% | |
| TGAGCTTAGTTCATTTGGTA+AGG | + | chr3_1:35405768-35405787 | Msa0356450:intron | 35.0% | |
| GAGCTTAGTTCATTTGGTAA+GGG | + | chr3_1:35405769-35405788 | Msa0356450:intron | 35.0% | |
| !! | TTATTCACCTTTAAGGTCTC+TGG | + | chr3_1:35405842-35405861 | Msa0356450:intron | 35.0% |
| ! | TTTCTTGGTCAATTAGCCTA+GGG | - | chr3_1:35405869-35405888 | None:intergenic | 35.0% |
| !! | TTTTCTTGGTCAATTAGCCT+AGG | - | chr3_1:35405870-35405889 | None:intergenic | 35.0% |
| AATAGGCCTAACAAATACGA+GGG | + | chr3_1:35406031-35406050 | Msa0356450:intron | 35.0% | |
| TTAATCCCCTCGTATTTGTT+AGG | - | chr3_1:35406040-35406059 | None:intergenic | 35.0% | |
| TCTTGTAGATGGGAAAAAAC+TGG | - | chr3_1:35406079-35406098 | None:intergenic | 35.0% | |
| TATATCAGGTTTCAGCTTCA+AGG | + | chr3_1:35406178-35406197 | Msa0356450:intron | 35.0% | |
| ATATCAGGTTTCAGCTTCAA+GGG | + | chr3_1:35406179-35406198 | Msa0356450:intron | 35.0% | |
| AAGATCATGGATCTGATCGT+CGG | - | chr3_1:35405266-35405285 | None:intergenic | 40.0% | |
| TTCTTCCTGAGATTCGCAAT+AGG | + | chr3_1:35405305-35405324 | Msa0356450:CDS | 40.0% | |
| GACTCTCCGGTAGATTAATA+GGG | - | chr3_1:35405639-35405658 | None:intergenic | 40.0% | |
| TGACTCTCCGGTAGATTAAT+AGG | - | chr3_1:35405640-35405659 | None:intergenic | 40.0% | |
| !! | GAGCTGTTTTGTGAGCTTTT+AGG | - | chr3_1:35405682-35405701 | None:intergenic | 40.0% |
| AGCTCAGAAGGACTTCTTTA+CGG | - | chr3_1:35405754-35405773 | None:intergenic | 40.0% | |
| CCAAATGAACTAAGCTCAGA+AGG | - | chr3_1:35405766-35405785 | None:intergenic | 40.0% | |
| CCTTCTGAGCTTAGTTCATT+TGG | + | chr3_1:35405763-35405782 | Msa0356450:intron | 40.0% | |
| TGCATAATATATGCAGGGAC+CGG | + | chr3_1:35405796-35405815 | Msa0356450:intron | 40.0% | |
| GTGAATAAGTATGGTGTCTG+GGG | - | chr3_1:35405830-35405849 | None:intergenic | 40.0% | |
| GGTGAATAAGTATGGTGTCT+GGG | - | chr3_1:35405831-35405850 | None:intergenic | 40.0% | |
| AGGTGAATAAGTATGGTGTC+TGG | - | chr3_1:35405832-35405851 | None:intergenic | 40.0% | |
| ! | TTCTTGGTCAATTAGCCTAG+GGG | - | chr3_1:35405868-35405887 | None:intergenic | 40.0% |
| !! | CCTTTTTCTTGTTATGTCCC+TGG | - | chr3_1:35406005-35406024 | None:intergenic | 40.0% |
| CCAGGGACATAACAAGAAAA+AGG | + | chr3_1:35406002-35406021 | Msa0356450:intron | 40.0% | |
| CAATAGGCCTAACAAATACG+AGG | + | chr3_1:35406030-35406049 | Msa0356450:intron | 40.0% | |
| ATAGGCCTAACAAATACGAG+GGG | + | chr3_1:35406032-35406051 | Msa0356450:intron | 40.0% | |
| AAGATCATGGATCTGATCGT+CGG | - | chr3_1:35405266-35405285 | None:intergenic | 40.0% | |
| TTCTTCCTGAGATTCGCAAT+AGG | + | chr3_1:35405305-35405324 | Msa0356450:CDS | 40.0% | |
| GACTCTCCGGTAGATTAATA+GGG | - | chr3_1:35405639-35405658 | None:intergenic | 40.0% | |
| TGACTCTCCGGTAGATTAAT+AGG | - | chr3_1:35405640-35405659 | None:intergenic | 40.0% | |
| !! | GAGCTGTTTTGTGAGCTTTT+AGG | - | chr3_1:35405682-35405701 | None:intergenic | 40.0% |
| AGCTCAGAAGGACTTCTTTA+CGG | - | chr3_1:35405754-35405773 | None:intergenic | 40.0% | |
| CCAAATGAACTAAGCTCAGA+AGG | - | chr3_1:35405766-35405785 | None:intergenic | 40.0% | |
| CCTTCTGAGCTTAGTTCATT+TGG | + | chr3_1:35405763-35405782 | Msa0356450:intron | 40.0% | |
| TGCATAATATATGCAGGGAC+CGG | + | chr3_1:35405796-35405815 | Msa0356450:intron | 40.0% | |
| GTGAATAAGTATGGTGTCTG+GGG | - | chr3_1:35405830-35405849 | None:intergenic | 40.0% | |
| GGTGAATAAGTATGGTGTCT+GGG | - | chr3_1:35405831-35405850 | None:intergenic | 40.0% | |
| AGGTGAATAAGTATGGTGTC+TGG | - | chr3_1:35405832-35405851 | None:intergenic | 40.0% | |
| ! | TTCTTGGTCAATTAGCCTAG+GGG | - | chr3_1:35405868-35405887 | None:intergenic | 40.0% |
| !! | CCTTTTTCTTGTTATGTCCC+TGG | - | chr3_1:35406005-35406024 | None:intergenic | 40.0% |
| CCAGGGACATAACAAGAAAA+AGG | + | chr3_1:35406002-35406021 | Msa0356450:intron | 40.0% | |
| CAATAGGCCTAACAAATACG+AGG | + | chr3_1:35406030-35406049 | Msa0356450:intron | 40.0% | |
| ATAGGCCTAACAAATACGAG+GGG | + | chr3_1:35406032-35406051 | Msa0356450:intron | 40.0% | |
| GCAACTTGGAGACAAGATCA+TGG | - | chr3_1:35405279-35405298 | None:intergenic | 45.0% | |
| AGGAAGAAGTTGCTGCAACT+TGG | - | chr3_1:35405293-35405312 | None:intergenic | 45.0% | |
| ACCAACTTAATCCTAGGTCC+AGG | + | chr3_1:35405984-35406003 | Msa0356450:intron | 45.0% | |
| CCAACTTAATCCTAGGTCCA+GGG | + | chr3_1:35405985-35406004 | Msa0356450:intron | 45.0% | |
| !! | TTTCAGCTTCAAGGGTGTTG+CGG | + | chr3_1:35406187-35406206 | Msa0356450:CDS | 45.0% |
| TGAGCGTTTGTCTGAGCTAT+TGG | + | chr3_1:35406260-35406279 | Msa0356450:CDS | 45.0% | |
| GCAACTTGGAGACAAGATCA+TGG | - | chr3_1:35405279-35405298 | None:intergenic | 45.0% | |
| AGGAAGAAGTTGCTGCAACT+TGG | - | chr3_1:35405293-35405312 | None:intergenic | 45.0% | |
| ACCAACTTAATCCTAGGTCC+AGG | + | chr3_1:35405984-35406003 | Msa0356450:intron | 45.0% | |
| CCAACTTAATCCTAGGTCCA+GGG | + | chr3_1:35405985-35406004 | Msa0356450:intron | 45.0% | |
| !! | TTTCAGCTTCAAGGGTGTTG+CGG | + | chr3_1:35406187-35406206 | Msa0356450:CDS | 45.0% |
| TGAGCGTTTGTCTGAGCTAT+TGG | + | chr3_1:35406260-35406279 | Msa0356450:CDS | 45.0% | |
| CACGGCAAACAAGTAGTTCG+AGG | + | chr3_1:35405233-35405252 | Msa0356450:CDS | 50.0% | |
| GAGCTCCTATTGCGAATCTC+AGG | - | chr3_1:35405313-35405332 | None:intergenic | 50.0% | |
| ! | TCGCAATAGGAGCTCTGACA+AGG | + | chr3_1:35405318-35405337 | Msa0356450:CDS | 50.0% |
| ! | CATGGTTAGAGCTGACTCTC+CGG | - | chr3_1:35405652-35405671 | None:intergenic | 50.0% |
| ! | AGAGTCAGCTCTAACCATGG+TGG | + | chr3_1:35405653-35405672 | Msa0356450:intron | 50.0% |
| !! | GAGCTTTTAGGAGTCCACCA+TGG | - | chr3_1:35405670-35405689 | None:intergenic | 50.0% |
| CCCTGGACCTAGGATTAAGT+TGG | - | chr3_1:35405988-35406007 | None:intergenic | 50.0% | |
| ! | CTTGTTATGTCCCTGGACCT+AGG | - | chr3_1:35405998-35406017 | None:intergenic | 50.0% |
| !! | TTCAGCTTCAAGGGTGTTGC+GGG | + | chr3_1:35406188-35406207 | Msa0356450:CDS | 50.0% |
| GCTCAGACAAACGCTCACTT+AGG | - | chr3_1:35406257-35406276 | None:intergenic | 50.0% | |
| CACGGCAAACAAGTAGTTCG+AGG | + | chr3_1:35405233-35405252 | Msa0356450:CDS | 50.0% | |
| GAGCTCCTATTGCGAATCTC+AGG | - | chr3_1:35405313-35405332 | None:intergenic | 50.0% | |
| ! | TCGCAATAGGAGCTCTGACA+AGG | + | chr3_1:35405318-35405337 | Msa0356450:CDS | 50.0% |
| ! | CATGGTTAGAGCTGACTCTC+CGG | - | chr3_1:35405652-35405671 | None:intergenic | 50.0% |
| ! | AGAGTCAGCTCTAACCATGG+TGG | + | chr3_1:35405653-35405672 | Msa0356450:intron | 50.0% |
| !! | GAGCTTTTAGGAGTCCACCA+TGG | - | chr3_1:35405670-35405689 | None:intergenic | 50.0% |
| CCCTGGACCTAGGATTAAGT+TGG | - | chr3_1:35405988-35406007 | None:intergenic | 50.0% | |
| ! | CTTGTTATGTCCCTGGACCT+AGG | - | chr3_1:35405998-35406017 | None:intergenic | 50.0% |
| !! | TTCAGCTTCAAGGGTGTTGC+GGG | + | chr3_1:35406188-35406207 | Msa0356450:CDS | 50.0% |
| GCTCAGACAAACGCTCACTT+AGG | - | chr3_1:35406257-35406276 | None:intergenic | 50.0% | |
| ! | CGGAGAGTCAGCTCTAACCA+TGG | + | chr3_1:35405650-35405669 | Msa0356450:intron | 55.0% |
| CTAGGGGCCAGAGACCTTAA+AGG | - | chr3_1:35405852-35405871 | None:intergenic | 55.0% | |
| !! | CTTTAAGGTCTCTGGCCCCT+AGG | + | chr3_1:35405850-35405869 | Msa0356450:intron | 55.0% |
| ! | CGGAGAGTCAGCTCTAACCA+TGG | + | chr3_1:35405650-35405669 | Msa0356450:intron | 55.0% |
| CTAGGGGCCAGAGACCTTAA+AGG | - | chr3_1:35405852-35405871 | None:intergenic | 55.0% | |
| !! | CTTTAAGGTCTCTGGCCCCT+AGG | + | chr3_1:35405850-35405869 | Msa0356450:intron | 55.0% |
| ! | GGTGTCTGGGGTTCGAACTC+CGG | - | chr3_1:35405818-35405837 | None:intergenic | 60.0% |
| ! | GGTGTCTGGGGTTCGAACTC+CGG | - | chr3_1:35405818-35405837 | None:intergenic | 60.0% |
| CTAGCAGGAGGTCGCGGTCA+CGG | + | chr3_1:35405215-35405234 | Msa0356450:CDS | 65.0% | |
| CTAGCAGGAGGTCGCGGTCA+CGG | + | chr3_1:35405215-35405234 | Msa0356450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 35405211 | 35406335 | 35405211 | ID=Msa0356450;Name=Msa0356450 |
| chr3_1 | mRNA | 35405211 | 35406335 | 35405211 | ID=Msa0356450-mRNA-1;Parent=Msa0356450;Name=Msa0356450-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|92 |
| chr3_1 | exon | 35405211 | 35405339 | 35405211 | ID=Msa0356450-mRNA-1:exon:6562;Parent=Msa0356450-mRNA-1 |
| chr3_1 | exon | 35406186 | 35406335 | 35406186 | ID=Msa0356450-mRNA-1:exon:6563;Parent=Msa0356450-mRNA-1 |
| chr3_1 | CDS | 35405211 | 35405339 | 35405211 | ID=Msa0356450-mRNA-1:cds;Parent=Msa0356450-mRNA-1 |
| chr3_1 | CDS | 35406186 | 35406335 | 35406186 | ID=Msa0356450-mRNA-1:cds;Parent=Msa0356450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
