Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383300 | XP_003603947.1 | 92.953 | 298 | 21 | 0 | 30 | 327 | 1 | 298 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383300 | G7J749 | 92.953 | 298 | 21 | 0 | 30 | 327 | 1 | 298 | 0.0 | 539 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022900 | Msa1383300 | 0.802556 | 5.305383e-49 | -8.615850e-47 |
| Msa0118660 | Msa1383300 | 0.813317 | 2.720738e-51 | -8.615850e-47 |
| Msa1368490 | Msa1383300 | 0.920464 | 1.237586e-87 | -8.615850e-47 |
| Msa0814230 | Msa1383300 | 0.800409 | 1.460613e-48 | -8.615850e-47 |
| Msa0987640 | Msa1383300 | 0.801605 | 8.320779e-49 | -8.615850e-47 |
| Msa0356450 | Msa1383300 | 0.823704 | 1.200045e-53 | -8.615850e-47 |
| Msa0523770 | Msa1383300 | 0.826616 | 2.460395e-54 | -8.615850e-47 |
| Msa0913550 | Msa1383300 | 0.814988 | 1.163731e-51 | -8.615850e-47 |
| Msa0951150 | Msa1383300 | 0.825050 | 5.789922e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383300 | MtrunA17_Chr3g0144751 | 92.953 | 298 | 21 | 0 | 30 | 327 | 1 | 298 | 0.0 | 539 |
| Msa1383300 | MtrunA17_Chr3g0144781 | 83.333 | 300 | 44 | 3 | 30 | 327 | 1 | 296 | 5.25e-175 | 486 |
| Msa1383300 | MtrunA17_Chr4g0035261 | 58.609 | 302 | 114 | 7 | 33 | 327 | 4 | 301 | 1.32e-105 | 311 |
| Msa1383300 | MtrunA17_Chr4g0035251 | 57.333 | 300 | 118 | 6 | 34 | 327 | 8 | 303 | 1.00e-103 | 306 |
| Msa1383300 | MtrunA17_Chr4g0035231 | 45.763 | 295 | 152 | 6 | 36 | 327 | 7 | 296 | 3.76e-65 | 207 |
| Msa1383300 | MtrunA17_Chr4g0035221 | 41.554 | 296 | 163 | 7 | 36 | 327 | 7 | 296 | 4.39e-57 | 186 |
| Msa1383300 | MtrunA17_Chr8g0370891 | 35.495 | 293 | 174 | 8 | 41 | 326 | 5 | 289 | 1.17e-39 | 141 |
| Msa1383300 | MtrunA17_Chr8g0370921 | 34.237 | 295 | 179 | 8 | 39 | 326 | 18 | 304 | 3.39e-39 | 140 |
| Msa1383300 | MtrunA17_Chr5g0406411 | 34.237 | 295 | 175 | 9 | 37 | 325 | 2 | 283 | 3.04e-38 | 137 |
| Msa1383300 | MtrunA17_Chr8g0370901 | 32.759 | 290 | 186 | 7 | 41 | 327 | 5 | 288 | 6.18e-38 | 136 |
| Msa1383300 | MtrunA17_Chr5g0406531 | 33.220 | 295 | 178 | 9 | 39 | 327 | 3 | 284 | 4.75e-37 | 134 |
| Msa1383300 | MtrunA17_Chr5g0406391 | 33.670 | 297 | 174 | 10 | 37 | 325 | 2 | 283 | 6.20e-36 | 131 |
| Msa1383300 | MtrunA17_Chr5g0406421 | 32.542 | 295 | 180 | 9 | 37 | 325 | 2 | 283 | 2.23e-35 | 129 |
| Msa1383300 | MtrunA17_Chr5g0406401 | 32.990 | 291 | 176 | 9 | 41 | 325 | 6 | 283 | 9.64e-35 | 128 |
| Msa1383300 | MtrunA17_Chr5g0406501 | 31.525 | 295 | 184 | 8 | 39 | 327 | 3 | 285 | 1.75e-34 | 127 |
| Msa1383300 | MtrunA17_Chr5g0406561 | 31.419 | 296 | 186 | 9 | 37 | 325 | 2 | 287 | 7.37e-34 | 125 |
| Msa1383300 | MtrunA17_Chr5g0406371 | 32.432 | 296 | 177 | 9 | 37 | 325 | 2 | 281 | 8.71e-34 | 125 |
| Msa1383300 | MtrunA17_Chr5g0406511 | 32.432 | 296 | 180 | 10 | 37 | 325 | 2 | 284 | 1.39e-33 | 125 |
| Msa1383300 | MtrunA17_Chr5g0406481 | 32.432 | 296 | 180 | 10 | 37 | 325 | 2 | 284 | 1.82e-33 | 124 |
| Msa1383300 | MtrunA17_Chr5g0406601 | 32.990 | 291 | 176 | 9 | 41 | 325 | 6 | 283 | 6.42e-33 | 123 |
| Msa1383300 | MtrunA17_Chr8g0370881 | 32.414 | 290 | 187 | 7 | 41 | 326 | 5 | 289 | 8.37e-33 | 123 |
| Msa1383300 | MtrunA17_Chr3g0144771 | 79.452 | 73 | 14 | 1 | 33 | 105 | 5 | 76 | 3.54e-32 | 115 |
| Msa1383300 | MtrunA17_Chr5g0406361 | 29.085 | 306 | 195 | 9 | 38 | 326 | 14 | 314 | 8.89e-27 | 107 |
| Msa1383300 | MtrunA17_Chr8g0370861 | 32.877 | 292 | 165 | 9 | 44 | 327 | 15 | 283 | 9.70e-27 | 106 |
| Msa1383300 | MtrunA17_Chr5g0406631 | 30.169 | 295 | 191 | 6 | 44 | 327 | 15 | 305 | 8.98e-21 | 90.9 |
| Msa1383300 | MtrunA17_Chr1g0164671 | 28.916 | 249 | 145 | 7 | 83 | 327 | 6 | 226 | 1.76e-17 | 80.1 |
| Msa1383300 | MtrunA17_Chr5g0406471 | 32.308 | 195 | 114 | 7 | 134 | 325 | 4 | 183 | 5.42e-17 | 77.8 |
| Msa1383300 | MtrunA17_Chr3g0143741 | 24.746 | 295 | 203 | 7 | 42 | 325 | 28 | 314 | 6.68e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383300 | AT2G17080.1 | 44.483 | 290 | 129 | 11 | 40 | 327 | 4 | 263 | 8.70e-58 | 187 |
| Msa1383300 | AT2G17070.1 | 40.830 | 289 | 141 | 10 | 40 | 327 | 4 | 263 | 3.05e-54 | 178 |
| Msa1383300 | AT4G35200.1 | 38.596 | 285 | 140 | 11 | 40 | 324 | 4 | 253 | 2.91e-47 | 160 |
| Msa1383300 | AT4G35210.1 | 37.895 | 285 | 139 | 11 | 40 | 324 | 4 | 250 | 7.58e-46 | 156 |
| Msa1383300 | AT4G35690.1 | 31.944 | 288 | 178 | 6 | 44 | 327 | 11 | 284 | 2.92e-37 | 135 |
| Msa1383300 | AT4G35710.1 | 32.292 | 288 | 176 | 7 | 44 | 327 | 11 | 283 | 3.08e-33 | 124 |
| Msa1383300 | AT2G17680.1 | 30.592 | 304 | 171 | 7 | 42 | 326 | 9 | 291 | 3.83e-30 | 116 |
| Msa1383300 | AT3G51400.1 | 34.158 | 202 | 120 | 5 | 129 | 326 | 82 | 274 | 3.75e-22 | 94.4 |
| Msa1383300 | AT4G35720.1 | 29.814 | 322 | 179 | 13 | 41 | 326 | 14 | 324 | 3.83e-21 | 92.4 |
| Msa1383300 | AT4G35680.1 | 28.477 | 302 | 188 | 9 | 44 | 327 | 19 | 310 | 5.10e-16 | 77.8 |
| Msa1383300 | AT1G76240.1 | 27.027 | 296 | 189 | 10 | 42 | 327 | 30 | 308 | 2.11e-15 | 75.9 |
| Msa1383300 | AT1G76210.1 | 27.236 | 246 | 153 | 5 | 83 | 327 | 6 | 226 | 2.29e-14 | 71.6 |
| Msa1383300 | AT1G20520.1 | 26.210 | 248 | 149 | 7 | 83 | 325 | 6 | 224 | 8.69e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAATTTACCAAGGTTT+TGG | 0.231968 | tig0020577:-112438 | None:intergenic |
| GATTGAGCGACCGTGGAAAT+TGG | 0.275230 | tig0020577:-112009 | None:intergenic |
| TTGATTTGCCATAAGATTGA+TGG | 0.315873 | tig0020577:+112125 | Msa1383300:CDS |
| TGACTTTCTCACTACCTTCC+TGG | 0.342138 | tig0020577:-112411 | None:intergenic |
| TAATCAAAGCCACTGTTTGA+TGG | 0.356764 | tig0020577:-112502 | None:intergenic |
| TAGGGAGCAAGAAACTCTTT+TGG | 0.362651 | tig0020577:-112645 | None:intergenic |
| CTCGCAAGCCATCAATCTTA+TGG | 0.373203 | tig0020577:-112133 | None:intergenic |
| CAAAACCTTGGTAAATTTGA+AGG | 0.380407 | tig0020577:+112439 | Msa1383300:CDS |
| AAGGGCTTGAGTTTCTATTC+AGG | 0.382811 | tig0020577:+112807 | Msa1383300:CDS |
| GGGCTGAATTAGCTTGGAAA+TGG | 0.383310 | tig0020577:-112624 | None:intergenic |
| GAAACTCAAGCCCTTCTTCA+AGG | 0.395499 | tig0020577:-112799 | None:intergenic |
| ACAATATTGCAATTTATCTC+AGG | 0.405201 | tig0020577:+112569 | Msa1383300:CDS |
| AAGGCCTTGAGTTTCTGTTT+AGG | 0.447455 | tig0020577:+108642 | Msa1383300:CDS |
| ATGACTCTGCTTTCTCTAAG+TGG | 0.454759 | tig0020577:-112766 | None:intergenic |
| ACAAACATCTAATAGCCTTA+AGG | 0.458051 | tig0020577:-112258 | None:intergenic |
| TGTATTCAAGACTTTGAAGA+AGG | 0.470916 | tig0020577:+108623 | Msa1383300:CDS |
| TGATGATGAGGAGGTTTCAC+TGG | 0.482946 | tig0020577:-112102 | None:intergenic |
| CACAATCAAAGTCAAACAGC+TGG | 0.484613 | tig0020577:+112597 | Msa1383300:CDS |
| ATGAGTGGGTGTGGTCTAGA+TGG | 0.496238 | tig0020577:-112038 | None:intergenic |
| TTCACTTTCATCTGCCACTA+GGG | 0.498643 | tig0020577:-112663 | None:intergenic |
| TGCATTCAAGACCTTGAAGA+AGG | 0.505538 | tig0020577:+112788 | Msa1383300:CDS |
| AAATGAGGTAAATAACCTCT+TGG | 0.511160 | tig0020577:+112229 | Msa1383300:CDS |
| TTAAGAAGTTCTTGACATCC+AGG | 0.514029 | tig0020577:+112393 | Msa1383300:CDS |
| CTTATTACAAGATGTTGAAG+TGG | 0.514690 | tig0020577:+112526 | Msa1383300:CDS |
| AAATATTCATCTAACGGTTG+AGG | 0.516290 | tig0020577:-108700 | None:intergenic |
| CATAAGAAGAAGCAAAAGAA+GGG | 0.516921 | tig0020577:+112340 | Msa1383300:CDS |
| ATTCACTTTCATCTGCCACT+AGG | 0.522731 | tig0020577:-112664 | None:intergenic |
| ACCTCTTGGATGGATCCTTA+AGG | 0.522922 | tig0020577:+112243 | Msa1383300:CDS |
| AGAAGTGCATCTTGTGTTAG+TGG | 0.525041 | tig0020577:-112191 | None:intergenic |
| GAGGTAAATAACCTCTTGGA+TGG | 0.528408 | tig0020577:+112233 | Msa1383300:CDS |
| AAAACCTTGGTAAATTTGAA+GGG | 0.535899 | tig0020577:+112440 | Msa1383300:CDS |
| CATTCAAGAATGAGTGGGTG+TGG | 0.537148 | tig0020577:-112047 | None:intergenic |
| TATTGTCTGAAATGTGGATA+GGG | 0.541099 | tig0020577:-112552 | None:intergenic |
| AACTCAAAATCCAATTTCCA+CGG | 0.542254 | tig0020577:+111999 | Msa1383300:CDS |
| TCATAAGAAGAAGCAAAAGA+AGG | 0.550800 | tig0020577:+112339 | Msa1383300:CDS |
| ACTGCAATGCTCCATCCACT+TGG | 0.550952 | tig0020577:-112691 | None:intergenic |
| ACATGAGCATCAAGAAAATG+AGG | 0.563141 | tig0020577:+112214 | Msa1383300:CDS |
| ACAATCAAAGTCAAACAGCT+GGG | 0.571866 | tig0020577:+112598 | Msa1383300:CDS |
| AAAGTCAATCTCCAAAACCT+TGG | 0.577340 | tig0020577:+112427 | Msa1383300:CDS |
| AGTGAATTTACCCAAGTGGA+TGG | 0.580307 | tig0020577:+112680 | Msa1383300:CDS |
| ATATTGTCTGAAATGTGGAT+AGG | 0.582878 | tig0020577:-112553 | None:intergenic |
| GATGAGGAGGTTTCACTGGA+AGG | 0.584560 | tig0020577:-112098 | None:intergenic |
| CAATATTGCAATTTATCTCA+GGG | 0.586618 | tig0020577:+112570 | Msa1383300:CDS |
| GCATTCAAGACCTTGAAGAA+GGG | 0.589953 | tig0020577:+112789 | Msa1383300:CDS |
| TTGCAATATTGTCTGAAATG+TGG | 0.600026 | tig0020577:-112558 | None:intergenic |
| CTGCAATGCTCCATCCACTT+GGG | 0.606871 | tig0020577:-112690 | None:intergenic |
| TGAAAGTGAATTTACCCAAG+TGG | 0.611145 | tig0020577:+112676 | Msa1383300:CDS |
| ATTTCCCTTCAAATTTACCA+AGG | 0.616059 | tig0020577:-112444 | None:intergenic |
| GCAAGCTGATTGAGCGACCG+TGG | 0.616949 | tig0020577:-112016 | None:intergenic |
| ATGGCAAATCAATGATGATG+AGG | 0.620344 | tig0020577:-112114 | None:intergenic |
| TCATTACATTCAAGAATGAG+TGG | 0.620570 | tig0020577:-112053 | None:intergenic |
| AAGAGTTTCTTGCTCCCTAG+TGG | 0.621626 | tig0020577:+112649 | Msa1383300:CDS |
| GAAGTTCTTGACATCCAGGA+AGG | 0.624427 | tig0020577:+112397 | Msa1383300:CDS |
| AGAAGCAAAAGAAGGGGATG+CGG | 0.636156 | tig0020577:+112347 | Msa1383300:CDS |
| GCAAATCAATGATGATGAGG+AGG | 0.636689 | tig0020577:-112111 | None:intergenic |
| TTCACACAAGAGAATGCACA+AGG | 0.641744 | tig0020577:+112303 | Msa1383300:CDS |
| TTCACTGGAAGGTCTTAACA+AGG | 0.653132 | tig0020577:-112087 | None:intergenic |
| CATTACATTCAAGAATGAGT+GGG | 0.654884 | tig0020577:-112052 | None:intergenic |
| ATAAGAAGAAGCAAAAGAAG+GGG | 0.655162 | tig0020577:+112341 | Msa1383300:CDS |
| GACGCCTAAACAGAAACTCA+AGG | 0.657716 | tig0020577:-108646 | None:intergenic |
| CAATCAAAGTCAAACAGCTG+GGG | 0.690125 | tig0020577:+112599 | Msa1383300:CDS |
| GCCTTAAGGATCCATCCAAG+AGG | 0.712564 | tig0020577:-112244 | None:intergenic |
| AAACAAAGACCATCAAACAG+TGG | 0.714988 | tig0020577:+112493 | Msa1383300:CDS |
| TCACACAAGAGAATGCACAA+GGG | 0.734454 | tig0020577:+112304 | Msa1383300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATAGTAATAATAAG+CGG | + | tig0020577:108781-108800 | Msa1383300:intron | 10.0% |
| !! | ATTAGAAAAAATAATGATTA+GGG | - | tig0020577:109021-109040 | None:intergenic | 10.0% |
| !!! | GAAAAATAAAAATATTGATT+TGG | - | tig0020577:109863-109882 | None:intergenic | 10.0% |
| !! | GATTAGAAAAAATAATGATT+AGG | - | tig0020577:109022-109041 | None:intergenic | 15.0% |
| !!! | TTTTCCATAGAAATATAATA+TGG | + | tig0020577:110704-110723 | Msa1383300:intron | 15.0% |
| !!! | TTTACCATATTATATTTCTA+TGG | - | tig0020577:110711-110730 | None:intergenic | 15.0% |
| !! | AATATAAAGCAAATAATTAC+AGG | + | tig0020577:111256-111275 | Msa1383300:intron | 15.0% |
| !!! | TTTTTATTTTAAAATTCCAC+TGG | + | tig0020577:111295-111314 | Msa1383300:intron | 15.0% |
| !!! | CATTATTTTTTCTAATCTCA+TGG | + | tig0020577:109025-109044 | Msa1383300:intron | 20.0% |
| !! | TGATATGAAGTATAAACTAA+TGG | + | tig0020577:109720-109739 | Msa1383300:intron | 20.0% |
| !! | TTAATTTCGTACCAAAAATT+TGG | - | tig0020577:110009-110028 | None:intergenic | 20.0% |
| !!! | TATTTCTATGGAAAATACTT+GGG | - | tig0020577:110699-110718 | None:intergenic | 20.0% |
| !!! | ATATTTCTATGGAAAATACT+TGG | - | tig0020577:110700-110719 | None:intergenic | 20.0% |
| !! | GAAACAAATGAATTTCTAAA+AGG | - | tig0020577:110968-110987 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGATAAGAGAAAA+TGG | - | tig0020577:111190-111209 | None:intergenic | 20.0% |
| !! | TTCTCTTATCTGAAAAATAA+AGG | + | tig0020577:111192-111211 | Msa1383300:intron | 20.0% |
| !! | GTGAACTTCAATATAATTAA+CGG | + | tig0020577:111382-111401 | Msa1383300:intron | 20.0% |
| !! | TGAACTTCAATATAATTAAC+GGG | + | tig0020577:111383-111402 | Msa1383300:intron | 20.0% |
| !! | ATGTTAACATGTGTTTAAAT+GGG | + | tig0020577:111570-111589 | Msa1383300:intron | 20.0% |
| !!! | TCAAGATTAAAATACGTTTT+CGG | + | tig0020577:111691-111710 | Msa1383300:intron | 20.0% |
| !! | CAATATATATTATGTGTGTT+AGG | - | tig0020577:111885-111904 | None:intergenic | 20.0% |
| ! | AACCGTTAGATGAATATTTA+TGG | + | tig0020577:108704-108723 | Msa1383300:intron | 25.0% |
| ! | CTCCATAAATATTCATCTAA+CGG | - | tig0020577:108709-108728 | None:intergenic | 25.0% |
| ! | AATATAGATTCACTTGTACA+TGG | + | tig0020577:108745-108764 | Msa1383300:intron | 25.0% |
| !! | ATCTCATGGATTATTGATAA+TGG | + | tig0020577:109039-109058 | Msa1383300:intron | 25.0% |
| ! | CAACTTTATACATTAATCTG+TGG | - | tig0020577:109144-109163 | None:intergenic | 25.0% |
| ! | ATTTGTGAACTAAAGCAATT+CGG | + | tig0020577:109215-109234 | Msa1383300:intron | 25.0% |
| ! | TTTGTAAACTATTATCGATG+TGG | + | tig0020577:109247-109266 | Msa1383300:intron | 25.0% |
| !!! | GATTTTTTGGTTTTCTGAAA+TGG | + | tig0020577:109278-109297 | Msa1383300:intron | 25.0% |
| ! | AGTTATTATTACGAGACATA+AGG | + | tig0020577:109385-109404 | Msa1383300:intron | 25.0% |
| !! | CATTATTAGGACATTTTCAA+CGG | + | tig0020577:109513-109532 | Msa1383300:intron | 25.0% |
| ! | TGTTCAATTTAGCATACATT+CGG | + | tig0020577:110331-110350 | Msa1383300:intron | 25.0% |
| ! | TACATTCGGGAATAAAATTA+AGG | + | tig0020577:110345-110364 | Msa1383300:intron | 25.0% |
| ! | TTGTAATAATCATTACAGCT+AGG | + | tig0020577:110393-110412 | Msa1383300:intron | 25.0% |
| ! | ATTCAATTATTAGATCACGT+TGG | + | tig0020577:110423-110442 | Msa1383300:intron | 25.0% |
| !! | TACAAAGTATGAGATTTTGA+TGG | + | tig0020577:110798-110817 | Msa1383300:intron | 25.0% |
| ! | TGGTTATTAACAACATGATT+TGG | + | tig0020577:110818-110837 | Msa1383300:intron | 25.0% |
| ! | GGTTATTAACAACATGATTT+GGG | + | tig0020577:110819-110838 | Msa1383300:intron | 25.0% |
| ! | TGAAATTTCTCAATAGATGA+AGG | + | tig0020577:110907-110926 | Msa1383300:intron | 25.0% |
| ! | AATTCATTTGTTTCAGATTC+TGG | + | tig0020577:110974-110993 | Msa1383300:intron | 25.0% |
| ! | ACACGTGTATTTGATTAAAA+CGG | - | tig0020577:111496-111515 | None:intergenic | 25.0% |
| ! | TAAACACATGTTAACATCAA+TGG | - | tig0020577:111567-111586 | None:intergenic | 25.0% |
| ! | GATGTTAACATGTGTTTAAA+TGG | + | tig0020577:111569-111588 | Msa1383300:intron | 25.0% |
| ! | ATCTTAATGACATATCAATG+AGG | - | tig0020577:111846-111865 | None:intergenic | 25.0% |
| ! | CAAATCAACATTCAACATTA+AGG | + | tig0020577:111928-111947 | Msa1383300:intron | 25.0% |
| !!! | CCATTTTTTTTCTTTGGTTA+AGG | - | tig0020577:111965-111984 | None:intergenic | 25.0% |
| ! | CCTTAACCAAAGAAAAAAAA+TGG | + | tig0020577:111962-111981 | Msa1383300:intron | 25.0% |
| !!! | AAATTGGATTTTGAGTTCAA+AGG | - | tig0020577:111996-112015 | None:intergenic | 25.0% |
| ! | AAAACCTTGGTAAATTTGAA+GGG | + | tig0020577:112440-112459 | Msa1383300:CDS | 25.0% |
| !! | AGATAAGATGTTGCAATTTT+TGG | - | tig0020577:112471-112490 | None:intergenic | 25.0% |
| ! | ACAATATTGCAATTTATCTC+AGG | + | tig0020577:112569-112588 | Msa1383300:CDS | 25.0% |
| ! | CAATATTGCAATTTATCTCA+GGG | + | tig0020577:112570-112589 | Msa1383300:CDS | 25.0% |
| ! | TGTATTCAAGACTTTGAAGA+AGG | + | tig0020577:108623-108642 | Msa1383300:CDS | 30.0% |
| AAATATTCATCTAACGGTTG+AGG | - | tig0020577:108703-108722 | None:intergenic | 30.0% | |
| CACTTGTACATGGAAATTAT+AGG | + | tig0020577:108755-108774 | Msa1383300:intron | 30.0% | |
| AATAATGATTAGGGTTGAGA+AGG | - | tig0020577:109012-109031 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTGATTCGATTTTT+TGG | + | tig0020577:109265-109284 | Msa1383300:intron | 30.0% |
| AAATGGCACAATATTCGATT+TGG | + | tig0020577:109295-109314 | Msa1383300:intron | 30.0% | |
| ! | CATGCAAGTAATTGATAGTT+AGG | - | tig0020577:109345-109364 | None:intergenic | 30.0% |
| CTAACTATCAATTACTTGCA+TGG | + | tig0020577:109343-109362 | Msa1383300:intron | 30.0% | |
| TAAACACGTATGAATCAATG+AGG | + | tig0020577:109422-109441 | Msa1383300:intron | 30.0% | |
| !! | TAAACTAATGGATTGCATTG+TGG | + | tig0020577:109732-109751 | Msa1383300:intron | 30.0% |
| !!! | CACCAAGCCTTTTTTTTTTT+CGG | + | tig0020577:109980-109999 | Msa1383300:intron | 30.0% |
| TTGGTCACCGAAAAAAAAAA+AGG | - | tig0020577:109990-110009 | None:intergenic | 30.0% | |
| !! | TTTTTCGGTGACCAAATTTT+TGG | + | tig0020577:109995-110014 | Msa1383300:intron | 30.0% |
| TTCAATGTGATCATAAGTGT+CGG | + | tig0020577:110124-110143 | Msa1383300:intron | 30.0% | |
| CTCTATATCACATAGTAACA+TGG | - | tig0020577:110292-110311 | None:intergenic | 30.0% | |
| GTTCAATTTAGCATACATTC+GGG | + | tig0020577:110332-110351 | Msa1383300:intron | 30.0% | |
| CAATTATTCAACGTTTGTAG+AGG | + | tig0020577:110474-110493 | Msa1383300:intron | 30.0% | |
| ATTTCTATATGCCATGTCTT+GGG | - | tig0020577:110510-110529 | None:intergenic | 30.0% | |
| ! | TATTTCTATATGCCATGTCT+TGG | - | tig0020577:110511-110530 | None:intergenic | 30.0% |
| AGACATGGCATATAGAAATA+TGG | + | tig0020577:110511-110530 | Msa1383300:intron | 30.0% | |
| GACATGGCATATAGAAATAT+GGG | + | tig0020577:110512-110531 | Msa1383300:intron | 30.0% | |
| !! | TAGAAATATGGGAAGCATTT+AGG | + | tig0020577:110523-110542 | Msa1383300:intron | 30.0% |
| ! | TTAACAACATGATTTGGGTT+TGG | + | tig0020577:110824-110843 | Msa1383300:intron | 30.0% |
| !!! | AGGAAAACTCTGGTTTTAAA+AGG | + | tig0020577:110859-110878 | Msa1383300:intron | 30.0% |
| !!! | TGTTGATCAATTTTTAGCAG+TGG | + | tig0020577:111036-111055 | Msa1383300:intron | 30.0% |
| AGCTTAACTAATGATACAGT+AGG | + | tig0020577:111088-111107 | Msa1383300:intron | 30.0% | |
| GCTTAACTAATGATACAGTA+GGG | + | tig0020577:111089-111108 | Msa1383300:intron | 30.0% | |
| TCTGAAAAATAAAGGTGACT+AGG | + | tig0020577:111200-111219 | Msa1383300:intron | 30.0% | |
| !! | GATATCATTGACTTCTTCAT+AGG | - | tig0020577:111545-111564 | None:intergenic | 30.0% |
| AAATGAGACAGATTATGAGT+TGG | + | tig0020577:111748-111767 | Msa1383300:intron | 30.0% | |
| AATGAGACAGATTATGAGTT+GGG | + | tig0020577:111749-111768 | Msa1383300:intron | 30.0% | |
| ATTATGTCTGAATCCAAATC+TGG | + | tig0020577:111811-111830 | Msa1383300:intron | 30.0% | |
| !! | TGAATGTTGATTTGAGTCTA+TGG | - | tig0020577:111922-111941 | None:intergenic | 30.0% |
| AACTCAAAATCCAATTTCCA+CGG | + | tig0020577:111999-112018 | Msa1383300:CDS | 30.0% | |
| CATTACATTCAAGAATGAGT+GGG | - | tig0020577:112055-112074 | None:intergenic | 30.0% | |
| TCATTACATTCAAGAATGAG+TGG | - | tig0020577:112056-112075 | None:intergenic | 30.0% | |
| !! | TTGATTTGCCATAAGATTGA+TGG | + | tig0020577:112125-112144 | Msa1383300:CDS | 30.0% |
| AAATGAGGTAAATAACCTCT+TGG | + | tig0020577:112229-112248 | Msa1383300:CDS | 30.0% | |
| ! | ACAAACATCTAATAGCCTTA+AGG | - | tig0020577:112261-112280 | None:intergenic | 30.0% |
| ! | TCTTTTGCTTCTTCTTATGA+GGG | - | tig0020577:112339-112358 | None:intergenic | 30.0% |
| ! | TTCTTTTGCTTCTTCTTATG+AGG | - | tig0020577:112340-112359 | None:intergenic | 30.0% |
| TCATAAGAAGAAGCAAAAGA+AGG | + | tig0020577:112339-112358 | Msa1383300:CDS | 30.0% | |
| CATAAGAAGAAGCAAAAGAA+GGG | + | tig0020577:112340-112359 | Msa1383300:CDS | 30.0% | |
| ATAAGAAGAAGCAAAAGAAG+GGG | + | tig0020577:112341-112360 | Msa1383300:CDS | 30.0% | |
| ! | CTTCAAATTTACCAAGGTTT+TGG | - | tig0020577:112441-112460 | None:intergenic | 30.0% |
| CAAAACCTTGGTAAATTTGA+AGG | + | tig0020577:112439-112458 | Msa1383300:CDS | 30.0% | |
| ATTTCCCTTCAAATTTACCA+AGG | - | tig0020577:112447-112466 | None:intergenic | 30.0% | |
| CTTATTACAAGATGTTGAAG+TGG | + | tig0020577:112526-112545 | Msa1383300:CDS | 30.0% | |
| ! | TATTGTCTGAAATGTGGATA+GGG | - | tig0020577:112555-112574 | None:intergenic | 30.0% |
| ! | ATATTGTCTGAAATGTGGAT+AGG | - | tig0020577:112556-112575 | None:intergenic | 30.0% |
| ! | TTGCAATATTGTCTGAAATG+TGG | - | tig0020577:112561-112580 | None:intergenic | 30.0% |
| !! | TGATAATGGAAGCTATTGTC+TGG | + | tig0020577:109053-109072 | Msa1383300:intron | 35.0% |
| TGAACTAAAGCAATTCGGTT+TGG | + | tig0020577:109220-109239 | Msa1383300:intron | 35.0% | |
| TGTCTCTCACTTGCATTATT+AGG | + | tig0020577:109500-109519 | Msa1383300:intron | 35.0% | |
| ATAAAATTCGAGCACGTTGA+TGG | - | tig0020577:109549-109568 | None:intergenic | 35.0% | |
| AAGCTAGTTGACACCAAAAT+TGG | + | tig0020577:109677-109696 | Msa1383300:intron | 35.0% | |
| AGTTGACACCAAAATTGGTT+AGG | + | tig0020577:109682-109701 | Msa1383300:intron | 35.0% | |
| GTTGACACCAAAATTGGTTA+GGG | + | tig0020577:109683-109702 | Msa1383300:intron | 35.0% | |
| TTGACACCAAAATTGGTTAG+GGG | + | tig0020577:109684-109703 | Msa1383300:intron | 35.0% | |
| !! | ATGGATTGCATTGTGGATTT+TGG | + | tig0020577:109739-109758 | Msa1383300:intron | 35.0% |
| !!! | ATTGTGGATTTTGGAACGAA+AGG | + | tig0020577:109748-109767 | Msa1383300:intron | 35.0% |
| ATTTATCAAAGATAGCCACG+AGG | + | tig0020577:109782-109801 | Msa1383300:intron | 35.0% | |
| TTTATCAAAGATAGCCACGA+GGG | + | tig0020577:109783-109802 | Msa1383300:intron | 35.0% | |
| TGTAATGTTGACATGAGTTC+AGG | - | tig0020577:109885-109904 | None:intergenic | 35.0% | |
| GAACTCATGTCAACATTACA+TGG | + | tig0020577:109885-109904 | Msa1383300:intron | 35.0% | |
| CACCGAAAAAAAAAAAGGCT+TGG | - | tig0020577:109985-110004 | None:intergenic | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | tig0020577:110615-110634 | Msa1383300:intron | 35.0% | |
| ATTAAATCTGGACCACACAA+AGG | - | tig0020577:110656-110675 | None:intergenic | 35.0% | |
| ! | TCTGGTTTAAAGGAAAACTC+TGG | + | tig0020577:110849-110868 | Msa1383300:intron | 35.0% |
| TAATCTCAACAACACTGTTG+TGG | - | tig0020577:111329-111348 | None:intergenic | 35.0% | |
| ! | ACAACAGTGTTGTTGAGATT+AGG | + | tig0020577:111328-111347 | Msa1383300:intron | 35.0% |
| ! | CAACAGTGTTGTTGAGATTA+GGG | + | tig0020577:111329-111348 | Msa1383300:intron | 35.0% |
| ATGAGAGTAAACATGGAAAC+TGG | + | tig0020577:111416-111435 | Msa1383300:intron | 35.0% | |
| !! | CATTGACTTCTTCATAGGAT+AGG | - | tig0020577:111540-111559 | None:intergenic | 35.0% |
| ATGAGACAGATTATGAGTTG+GGG | + | tig0020577:111750-111769 | Msa1383300:intron | 35.0% | |
| !! | GAATCCAAATCTGGATTAGT+TGG | + | tig0020577:111820-111839 | Msa1383300:intron | 35.0% |
| !!! | AGGCTGCCATTTTTTTTCTT+TGG | - | tig0020577:111971-111990 | None:intergenic | 35.0% |
| ! | ATGGCAAATCAATGATGATG+AGG | - | tig0020577:112117-112136 | None:intergenic | 35.0% |
| GATCGAGTGTGTTGAAAAAT+TGG | + | tig0020577:112160-112179 | Msa1383300:CDS | 35.0% | |
| ACATGAGCATCAAGAAAATG+AGG | + | tig0020577:112214-112233 | Msa1383300:CDS | 35.0% | |
| TTAAGAAGTTCTTGACATCC+AGG | + | tig0020577:112393-112412 | Msa1383300:CDS | 35.0% | |
| AAAGTCAATCTCCAAAACCT+TGG | + | tig0020577:112427-112446 | Msa1383300:CDS | 35.0% | |
| AAACAAAGACCATCAAACAG+TGG | + | tig0020577:112493-112512 | Msa1383300:CDS | 35.0% | |
| TAATCAAAGCCACTGTTTGA+TGG | - | tig0020577:112505-112524 | None:intergenic | 35.0% | |
| ACAATCAAAGTCAAACAGCT+GGG | + | tig0020577:112598-112617 | Msa1383300:CDS | 35.0% | |
| TGAAAGTGAATTTACCCAAG+TGG | + | tig0020577:112676-112695 | Msa1383300:CDS | 35.0% | |
| AAGGCCTTGAGTTTCTGTTT+AGG | + | tig0020577:108642-108661 | Msa1383300:CDS | 40.0% | |
| AGCATCCAATTGAATCGCAA+GGG | + | tig0020577:108916-108935 | Msa1383300:intron | 40.0% | |
| GACTGAACCCAAAAACTGAA+CGG | + | tig0020577:109163-109182 | Msa1383300:intron | 40.0% | |
| ! | TGCTGTTCCGTTCAGTTTTT+GGG | - | tig0020577:109173-109192 | None:intergenic | 40.0% |
| GAGGCTAACTAATCGAGATT+TGG | + | tig0020577:109441-109460 | Msa1383300:intron | 40.0% | |
| ! | TGTCATCCCCTAACCAATTT+TGG | - | tig0020577:109693-109712 | None:intergenic | 40.0% |
| AAATTGGTTAGGGGATGACA+TGG | + | tig0020577:109693-109712 | Msa1383300:intron | 40.0% | |
| TTATCAAAGATAGCCACGAG+GGG | + | tig0020577:109784-109803 | Msa1383300:intron | 40.0% | |
| !! | GCACATGCACTTTTGATTGA+AGG | - | tig0020577:110169-110188 | None:intergenic | 40.0% |
| TGTCACCGTGACATTAAATC+TGG | + | tig0020577:110554-110573 | Msa1383300:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | tig0020577:110555-110574 | Msa1383300:intron | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | - | tig0020577:110562-110581 | None:intergenic | 40.0% | |
| ACACATTGCCACAAAACATC+TGG | + | tig0020577:110587-110606 | Msa1383300:intron | 40.0% | |
| CACATTGCCACAAAACATCT+GGG | + | tig0020577:110588-110607 | Msa1383300:intron | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | tig0020577:110614-110633 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | + | tig0020577:110614-110633 | Msa1383300:intron | 40.0% | |
| !! | CACAAAGGTGTTGTGTTATG+TGG | - | tig0020577:110641-110660 | None:intergenic | 40.0% |
| CATAACACAACACCTTTGTG+TGG | + | tig0020577:110641-110660 | Msa1383300:intron | 40.0% | |
| GTGGTCCAGATTTAATGTCA+CGG | + | tig0020577:110660-110679 | Msa1383300:intron | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | tig0020577:110554-110573 | None:intergenic | 40.0% | |
| GCATGTGATGAGAGTAAACA+TGG | + | tig0020577:111409-111428 | Msa1383300:intron | 40.0% | |
| AAACTGGATCATGTGTCTGT+AGG | + | tig0020577:111432-111451 | Msa1383300:intron | 40.0% | |
| TCTTCATAGGATAGGAGTTG+AGG | - | tig0020577:111532-111551 | None:intergenic | 40.0% | |
| ATTGTTAGGCATGTCTCTGT+TGG | - | tig0020577:111615-111634 | None:intergenic | 40.0% | |
| GCAACAACTGCAGTATTGTT+AGG | - | tig0020577:111629-111648 | None:intergenic | 40.0% | |
| ! | CAATACTGCAGTTGTTGCTT+TGG | + | tig0020577:111631-111650 | Msa1383300:intron | 40.0% |
| CAGTACTACACATGTGCAAA+TGG | + | tig0020577:111662-111681 | Msa1383300:intron | 40.0% | |
| !!! | GGATTTTGAGTTCAAAGGAG+AGG | - | tig0020577:111991-112010 | None:intergenic | 40.0% |
| TTCACTGGAAGGTCTTAACA+AGG | - | tig0020577:112090-112109 | None:intergenic | 40.0% | |
| ! | GCAAATCAATGATGATGAGG+AGG | - | tig0020577:112114-112133 | None:intergenic | 40.0% |
| ! | AGAAGTGCATCTTGTGTTAG+TGG | - | tig0020577:112194-112213 | None:intergenic | 40.0% |
| GAGGTAAATAACCTCTTGGA+TGG | + | tig0020577:112233-112252 | Msa1383300:CDS | 40.0% | |
| TTCACACAAGAGAATGCACA+AGG | + | tig0020577:112303-112322 | Msa1383300:CDS | 40.0% | |
| TCACACAAGAGAATGCACAA+GGG | + | tig0020577:112304-112323 | Msa1383300:CDS | 40.0% | |
| CACAATCAAAGTCAAACAGC+TGG | + | tig0020577:112597-112616 | Msa1383300:CDS | 40.0% | |
| CAATCAAAGTCAAACAGCTG+GGG | + | tig0020577:112599-112618 | Msa1383300:CDS | 40.0% | |
| ! | TCTTTTGGGCTGAATTAGCT+TGG | - | tig0020577:112633-112652 | None:intergenic | 40.0% |
| ! | AGGGAGCAAGAAACTCTTTT+GGG | - | tig0020577:112647-112666 | None:intergenic | 40.0% |
| ! | TAGGGAGCAAGAAACTCTTT+TGG | - | tig0020577:112648-112667 | None:intergenic | 40.0% |
| TTCACTTTCATCTGCCACTA+GGG | - | tig0020577:112666-112685 | None:intergenic | 40.0% | |
| ATTCACTTTCATCTGCCACT+AGG | - | tig0020577:112667-112686 | None:intergenic | 40.0% | |
| AGTGAATTTACCCAAGTGGA+TGG | + | tig0020577:112680-112699 | Msa1383300:CDS | 40.0% | |
| !! | GGCTTCAAGTTTTCTAGTCT+TGG | - | tig0020577:112729-112748 | None:intergenic | 40.0% |
| !! | GTGGTTTTGCAGATCATTGA+TGG | - | tig0020577:112750-112769 | None:intergenic | 40.0% |
| ATGACTCTGCTTTCTCTAAG+TGG | - | tig0020577:112769-112788 | None:intergenic | 40.0% | |
| TGCATTCAAGACCTTGAAGA+AGG | + | tig0020577:112788-112807 | Msa1383300:CDS | 40.0% | |
| GCATTCAAGACCTTGAAGAA+GGG | + | tig0020577:112789-112808 | Msa1383300:CDS | 40.0% | |
| AAGGGCTTGAGTTTCTATTC+AGG | + | tig0020577:112807-112826 | Msa1383300:CDS | 40.0% | |
| GACGCCTAAACAGAAACTCA+AGG | - | tig0020577:108649-108668 | None:intergenic | 45.0% | |
| ACACGTGTGCTGTGGAAAAA+TGG | - | tig0020577:108835-108854 | None:intergenic | 45.0% | |
| GAGCATCCAATTGAATCGCA+AGG | + | tig0020577:108915-108934 | Msa1383300:intron | 45.0% | |
| TGTCTCCCTTGCGATTCAAT+TGG | - | tig0020577:108924-108943 | None:intergenic | 45.0% | |
| ACACACTGGCAATGCATATG+AGG | - | tig0020577:108961-108980 | None:intergenic | 45.0% | |
| !! | AAGCATTGGAAGGAACACAC+TGG | - | tig0020577:108975-108994 | None:intergenic | 45.0% |
| !! | GGTTCAAGGAAAGCATTGGA+AGG | - | tig0020577:108985-109004 | None:intergenic | 45.0% |
| ! | CTTGGGTTCAAGGAAAGCAT+TGG | - | tig0020577:108989-109008 | None:intergenic | 45.0% |
| GATTAGGGTTGAGAAGGCTT+GGG | - | tig0020577:109006-109025 | None:intergenic | 45.0% | |
| TGATTAGGGTTGAGAAGGCT+TGG | - | tig0020577:109007-109026 | None:intergenic | 45.0% | |
| TGAATTTGTCTGCCTCGAAC+AGG | + | tig0020577:109115-109134 | Msa1383300:intron | 45.0% | |
| !! | GTGCTGTTCCGTTCAGTTTT+TGG | - | tig0020577:109174-109193 | None:intergenic | 45.0% |
| GCTAGTCATGTCTCTCTTAG+TGG | + | tig0020577:109611-109630 | Msa1383300:intron | 45.0% | |
| TGCTCTTTAATTACCCCTCG+TGG | - | tig0020577:109800-109819 | None:intergenic | 45.0% | |
| !! | GTGATCATAAGTGTCGGTGT+CGG | + | tig0020577:110130-110149 | Msa1383300:intron | 45.0% |
| !! | TTTTGATTGAAGGCGTGTCC+CGG | - | tig0020577:110159-110178 | None:intergenic | 45.0% |
| ! | CAAAAGTGCATGTGCAACAG+AGG | + | tig0020577:110174-110193 | Msa1383300:intron | 45.0% |
| GTTCATTCTGACCCAAGACA+TGG | + | tig0020577:110496-110515 | Msa1383300:intron | 45.0% | |
| ! | CATGATTTGGGTTTGGCTTC+TGG | + | tig0020577:110831-110850 | Msa1383300:intron | 45.0% |
| !! | GGGTTTGGCTTCTGGTTTAA+AGG | + | tig0020577:110839-110858 | Msa1383300:intron | 45.0% |
| GCTGCATCTGCAAAGATTGA+AGG | - | tig0020577:111071-111090 | None:intergenic | 45.0% | |
| ! | CGACTATGCAGAGAGCTTTT+GGG | + | tig0020577:111144-111163 | Msa1383300:intron | 45.0% |
| ! | TATGAGTTGGGGAGATTCCT+TGG | + | tig0020577:111761-111780 | Msa1383300:intron | 45.0% |
| ! | ATGAGTTGGGGAGATTCCTT+GGG | + | tig0020577:111762-111781 | Msa1383300:intron | 45.0% |
| GAGGCCAACTAATCCAGATT+TGG | - | tig0020577:111827-111846 | None:intergenic | 45.0% | |
| TATGTGTGTTAGGCGACACA+AGG | - | tig0020577:111875-111894 | None:intergenic | 45.0% | |
| CATTCAAGAATGAGTGGGTG+TGG | - | tig0020577:112050-112069 | None:intergenic | 45.0% | |
| ! | TGATGATGAGGAGGTTTCAC+TGG | - | tig0020577:112105-112124 | None:intergenic | 45.0% |
| CTCGCAAGCCATCAATCTTA+TGG | - | tig0020577:112136-112155 | None:intergenic | 45.0% | |
| ACCTCTTGGATGGATCCTTA+AGG | + | tig0020577:112243-112262 | Msa1383300:CDS | 45.0% | |
| AGAAGCAAAAGAAGGGGATG+CGG | + | tig0020577:112347-112366 | Msa1383300:CDS | 45.0% | |
| GAAGTTCTTGACATCCAGGA+AGG | + | tig0020577:112397-112416 | Msa1383300:CDS | 45.0% | |
| TGACTTTCTCACTACCTTCC+TGG | - | tig0020577:112414-112433 | None:intergenic | 45.0% | |
| ! | GGGCTGAATTAGCTTGGAAA+TGG | - | tig0020577:112627-112646 | None:intergenic | 45.0% |
| AAGAGTTTCTTGCTCCCTAG+TGG | + | tig0020577:112649-112668 | Msa1383300:CDS | 45.0% | |
| GAAACTCAAGCCCTTCTTCA+AGG | - | tig0020577:112802-112821 | None:intergenic | 45.0% | |
| GTTGAGAAGGCTTGGGTTCA+AGG | - | tig0020577:108999-109018 | None:intergenic | 50.0% | |
| TGGAAGCTATTGTCTGGACG+AGG | + | tig0020577:109059-109078 | Msa1383300:intron | 50.0% | |
| AATCTGTGGTGTCCTGTTCG+AGG | - | tig0020577:109130-109149 | None:intergenic | 50.0% | |
| CTGACACAAACACGTCGACA+CGG | + | tig0020577:110076-110095 | Msa1383300:intron | 50.0% | |
| AGTGCATGTGCAACAGAGGT+TGG | + | tig0020577:110178-110197 | Msa1383300:intron | 50.0% | |
| ! | TGTGTGGCCCAGATGTTTTG+TGG | - | tig0020577:110598-110617 | None:intergenic | 50.0% |
| TACAGTAGGGTGTGTTGCAG+AGG | + | tig0020577:111102-111121 | Msa1383300:intron | 50.0% | |
| ACAGTAGGGTGTGTTGCAGA+GGG | + | tig0020577:111103-111122 | Msa1383300:intron | 50.0% | |
| TTGCAGAGGGTAAGCTGTTG+CGG | + | tig0020577:111116-111135 | Msa1383300:intron | 50.0% | |
| ! | GCGACTATGCAGAGAGCTTT+TGG | + | tig0020577:111143-111162 | Msa1383300:intron | 50.0% |
| TGTTGTGGTAGCACTACCAG+TGG | - | tig0020577:111314-111333 | None:intergenic | 50.0% | |
| GTTAGGCATGTCTCTGTTGG+AGG | - | tig0020577:111612-111631 | None:intergenic | 50.0% | |
| ! | TGAGTTGGGGAGATTCCTTG+GGG | + | tig0020577:111763-111782 | Msa1383300:intron | 50.0% |
| GATTGAGCGACCGTGGAAAT+TGG | - | tig0020577:112012-112031 | None:intergenic | 50.0% | |
| ATGAGTGGGTGTGGTCTAGA+TGG | - | tig0020577:112041-112060 | None:intergenic | 50.0% | |
| GATGAGGAGGTTTCACTGGA+AGG | - | tig0020577:112101-112120 | None:intergenic | 50.0% | |
| GCCTTAAGGATCCATCCAAG+AGG | - | tig0020577:112247-112266 | None:intergenic | 50.0% | |
| CTGCAATGCTCCATCCACTT+GGG | - | tig0020577:112693-112712 | None:intergenic | 50.0% | |
| ACTGCAATGCTCCATCCACT+TGG | - | tig0020577:112694-112713 | None:intergenic | 50.0% | |
| !! | TAAGTGTCGGTGTCGGACAC+CGG | + | tig0020577:110137-110156 | Msa1383300:intron | 55.0% |
| GAGTTGGGGAGATTCCTTGG+GGG | + | tig0020577:111764-111783 | Msa1383300:intron | 55.0% | |
| GAGATTCCTTGGGGGAGACA+AGG | + | tig0020577:111772-111791 | Msa1383300:intron | 55.0% | |
| ! | TTAGAGCCTTGTCTCCCCCA+AGG | - | tig0020577:111781-111800 | None:intergenic | 55.0% |
| TGCACTGCACACGTGTGCTG+TGG | - | tig0020577:108843-108862 | None:intergenic | 60.0% | |
| !! | AAGTGTCGGTGTCGGACACC+GGG | + | tig0020577:110138-110157 | Msa1383300:intron | 60.0% |
| GCAAGCTGATTGAGCGACCG+TGG | - | tig0020577:112019-112038 | None:intergenic | 60.0% | |
| GAGGGTAAGCTGTTGCGGCG+AGG | + | tig0020577:111121-111140 | Msa1383300:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020577 | gene | 108614 | 112877 | 108614 | ID=Msa1383300;Name=Msa1383300 |
| tig0020577 | mRNA | 108614 | 112877 | 108614 | ID=Msa1383300-mRNA-1;Parent=Msa1383300;Name=Msa1383300-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0|0|2|0|327 |
| tig0020577 | exon | 108614 | 108707 | 108614 | ID=Msa1383300-mRNA-1:exon:8516;Parent=Msa1383300-mRNA-1 |
| tig0020577 | exon | 111988 | 112877 | 111988 | ID=Msa1383300-mRNA-1:exon:8517;Parent=Msa1383300-mRNA-1 |
| tig0020577 | CDS | 108614 | 108707 | 108614 | ID=Msa1383300-mRNA-1:cds;Parent=Msa1383300-mRNA-1 |
| tig0020577 | CDS | 111988 | 112877 | 111988 | ID=Msa1383300-mRNA-1:cds;Parent=Msa1383300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
