Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525220 | AES89389.2 | 80.312 | 640 | 103 | 11 | 1 | 627 | 1 | 630 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525220 | sp|O74828|ESF1_SCHPO | 31.831 | 688 | 343 | 25 | 20 | 608 | 19 | 679 | 2.63e-68 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525220 | G7JNE8 | 80.312 | 640 | 103 | 11 | 1 | 627 | 1 | 630 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382540 | Msa0525220 | 0.935688 | 5.718461e-97 | -8.615850e-47 |
| Msa0525220 | Msa1075650 | 0.821527 | 3.850565e-53 | -8.615850e-47 |
| Msa0525220 | Msa1429850 | 0.842439 | 2.584254e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525220 | MtrunA17_Chr4g0052231 | 51.793 | 697 | 252 | 22 | 18 | 641 | 47 | 732 | 4.70e-174 | 514 |
| Msa0525220 | MtrunA17_Chr4g0037051 | 80.060 | 336 | 56 | 6 | 1 | 329 | 1 | 332 | 1.34e-166 | 483 |
| Msa0525220 | MtrunA17_Chr4g0037061 | 70.940 | 351 | 59 | 7 | 327 | 642 | 12 | 354 | 3.28e-133 | 396 |
| Msa0525220 | MtrunA17_Chr3g0137811 | 86.207 | 116 | 11 | 2 | 517 | 627 | 1 | 116 | 4.92e-60 | 197 |
| Msa0525220 | MtrunA17_Chr3g0137801 | 87.903 | 124 | 13 | 1 | 363 | 484 | 1 | 124 | 1.65e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525220 | AT3G01160.1 | 41.630 | 687 | 281 | 21 | 20 | 623 | 30 | 679 | 2.94e-132 | 406 |
Find 113 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTAGTCCACTTGATTTA+AGG | 0.103671 | 3_4:+78745673 | Msa0525220:CDS |
| TATCTTAGTTTGGTCTATTC+AGG | 0.231031 | 3_4:+78749423 | Msa0525220:CDS |
| CCTTGTCTGACCATCTTGAT+TGG | 0.265105 | 3_4:-78750643 | None:intergenic |
| TAAGGTTTATTCCTGACATT+TGG | 0.265200 | 3_4:+78745691 | Msa0525220:CDS |
| AGAAGAAGAAGAAGGAGAAC+AGG | 0.271293 | 3_4:+78744418 | Msa0525220:CDS |
| AACTACGTAGTCAAAGATTT+TGG | 0.274407 | 3_4:+78745834 | Msa0525220:CDS |
| GCTGTCTATCCAACTGAGTT+TGG | 0.281054 | 3_4:+78744867 | Msa0525220:CDS |
| CTACCAATCCACAATTTAAA+AGG | 0.288495 | 3_4:+78749991 | Msa0525220:CDS |
| CTGTCTATCCAACTGAGTTT+GGG | 0.310560 | 3_4:+78744868 | Msa0525220:CDS |
| AAAAGACATTTGCATTACTT+TGG | 0.325778 | 3_4:-78750507 | None:intergenic |
| AGAAGGAGAACAGGGATTGA+TGG | 0.333327 | 3_4:+78744427 | Msa0525220:CDS |
| ACAAGATATGTATCTTAGTT+TGG | 0.334345 | 3_4:+78749413 | Msa0525220:CDS |
| ATGGAGGTGACCTTCCATTC+AGG | 0.349398 | 3_4:+78749489 | Msa0525220:CDS |
| AAAGACATTTGCATTACTTT+GGG | 0.354034 | 3_4:-78750506 | None:intergenic |
| CTTCTTCTACTTTGTAGTAA+TGG | 0.364768 | 3_4:-78744391 | None:intergenic |
| AAACAGTTTGGGAAGCATTT+CGG | 0.373490 | 3_4:+78749562 | Msa0525220:CDS |
| ATAAAAGATCAGAAACAGTT+TGG | 0.382446 | 3_4:+78749550 | Msa0525220:CDS |
| AAGGTTTATTCCTGACATTT+GGG | 0.408401 | 3_4:+78745692 | Msa0525220:CDS |
| GCTTTAATAGCTTGCTCAGT+TGG | 0.409614 | 3_4:+78749305 | Msa0525220:intron |
| CCGCATCCTGCTCTTCTGAT+AGG | 0.410075 | 3_4:-78744985 | None:intergenic |
| TGACATTTGGGAATTCAAAC+AGG | 0.431467 | 3_4:+78745704 | Msa0525220:CDS |
| GGGAAGCATTTCGGAGGAAA+AGG | 0.439702 | 3_4:+78749571 | Msa0525220:CDS |
| TAAAAGATCAGAAACAGTTT+GGG | 0.450088 | 3_4:+78749551 | Msa0525220:CDS |
| AAGAAAATTTACTGATGAGC+AGG | 0.451778 | 3_4:+78745932 | Msa0525220:CDS |
| ATTTGATCATTCCATTCGTT+GGG | 0.460852 | 3_4:-78744839 | None:intergenic |
| TCATCACTATATGTACTGTT+TGG | 0.467432 | 3_4:-78749921 | None:intergenic |
| GAAGGATAAGAAAGAAGGAT+TGG | 0.467803 | 3_4:+78750544 | Msa0525220:CDS |
| GTTGGAATGGAAAGAATACT+TGG | 0.472915 | 3_4:+78749323 | Msa0525220:CDS |
| TACTGACACGCTTGATATGC+AGG | 0.477038 | 3_4:+78744526 | Msa0525220:CDS |
| AGTTTGGTCTATTCAGGCAA+TGG | 0.477065 | 3_4:+78749429 | Msa0525220:CDS |
| TCAGAAGTGCTGCATATGTC+AGG | 0.485957 | 3_4:+78750438 | Msa0525220:intron |
| ATGATGATCCCTTTCGCAAA+AGG | 0.486579 | 3_4:+78745901 | Msa0525220:CDS |
| TGTTTGAATTCCCAAATGTC+AGG | 0.487735 | 3_4:-78745702 | None:intergenic |
| GGAAGGTCACCTCCATCTCT+TGG | 0.492100 | 3_4:-78749482 | None:intergenic |
| AATTCATTTGTCCCAACGAA+TGG | 0.492101 | 3_4:+78744828 | Msa0525220:CDS |
| TTCTTCCTCTTCTTAGCACA+AGG | 0.493874 | 3_4:-78749696 | None:intergenic |
| GATTTGATCATTCCATTCGT+TGG | 0.497978 | 3_4:-78744840 | None:intergenic |
| TTAGACATTCCAATCCTGAA+TGG | 0.500488 | 3_4:-78749503 | None:intergenic |
| AATAGCTTGCTCAGTTGGAA+TGG | 0.502815 | 3_4:+78749310 | Msa0525220:intron |
| GGGAATTCAAACAGGAGCCT+AGG | 0.504845 | 3_4:+78745712 | Msa0525220:CDS |
| GATGACAAGAGGATAGAAAC+TGG | 0.506109 | 3_4:+78749816 | Msa0525220:CDS |
| TGCGTGCCTATCAGAAGAGC+AGG | 0.506500 | 3_4:+78744979 | Msa0525220:CDS |
| GTAGGATCAATAGCATAGTC+AGG | 0.510491 | 3_4:-78749972 | None:intergenic |
| GATGGTCAGACAAGGAAAGA+TGG | 0.511671 | 3_4:+78750651 | Msa0525220:CDS |
| GGTGACCTTCCATTCAGGAT+TGG | 0.516982 | 3_4:+78749494 | Msa0525220:CDS |
| TGATTGAGAAAGATACTCAT+AGG | 0.520942 | 3_4:+78744670 | Msa0525220:CDS |
| ACACAAGCAGAAGGGTCAAA+TGG | 0.522132 | 3_4:+78750472 | Msa0525220:CDS |
| CAAAGAACATAATAACCTCC+TGG | 0.523905 | 3_4:+78749740 | Msa0525220:CDS |
| GAGGATAGAAACTGGTCTCA+AGG | 0.527889 | 3_4:+78749824 | Msa0525220:CDS |
| GGCCTGCCTCTCTTGTCGAT+TGG | 0.527987 | 3_4:-78744329 | None:intergenic |
| TGTCAACAGCAACCATGTCC+AGG | 0.530946 | 3_4:-78749758 | None:intergenic |
| GCAGCTAGCACACAAGCAGA+AGG | 0.534408 | 3_4:+78750463 | Msa0525220:CDS |
| CACATTTACAAAGAATGTAA+TGG | 0.534661 | 3_4:+78745639 | Msa0525220:CDS |
| AACGAATGGAATGATCAAAT+CGG | 0.535386 | 3_4:+78744842 | Msa0525220:CDS |
| ATGCAGAAGGATAAGAAAGA+AGG | 0.537357 | 3_4:+78750539 | Msa0525220:CDS |
| AGAGGGAAGTGAAAGAGTGA+AGG | 0.537368 | 3_4:+78751309 | Msa0525220:CDS |
| ACATATTTGGTATGAAATCG+TGG | 0.538508 | 3_4:+78744123 | None:intergenic |
| AGCAGATGAATTCTTCATTG+AGG | 0.539702 | 3_4:+78749671 | Msa0525220:CDS |
| TTTGTAAATGTGAGCTGCTG+TGG | 0.539886 | 3_4:-78745628 | None:intergenic |
| TGGGCTTCAACGTATGAAAG+AGG | 0.540071 | 3_4:+78744887 | Msa0525220:CDS |
| CACCAATCGACAAGAGAGGC+AGG | 0.541791 | 3_4:+78744327 | Msa0525220:CDS |
| TAACAGTGAGACTGATGATC+AGG | 0.542635 | 3_4:+78749371 | Msa0525220:CDS |
| GGAGAATGTTATTATTGATG+AGG | 0.542911 | 3_4:+78749890 | Msa0525220:CDS |
| AGGAGAACAGGGATTGATGG+AGG | 0.543376 | 3_4:+78744430 | Msa0525220:CDS |
| CGTTGAAGCCCAAACTCAGT+TGG | 0.548103 | 3_4:-78744876 | None:intergenic |
| GGAATAAACCTTAAATCAAG+TGG | 0.549824 | 3_4:-78745681 | None:intergenic |
| TGATGATCAGGTTGATGAGA+AGG | 0.554035 | 3_4:+78749383 | Msa0525220:CDS |
| AGGATAGAAACTGGTCTCAA+GGG | 0.554727 | 3_4:+78749825 | Msa0525220:CDS |
| TGAGAAAGATACTCATAGGC+TGG | 0.559647 | 3_4:+78744674 | Msa0525220:CDS |
| GAGAATGTTATTATTGATGA+GGG | 0.560141 | 3_4:+78749891 | Msa0525220:CDS |
| TAGGCTGGCTGTTGTCAACA+TGG | 0.560464 | 3_4:+78744689 | Msa0525220:CDS |
| GGAATTCAAACAGGAGCCTA+GGG | 0.560571 | 3_4:+78745713 | Msa0525220:CDS |
| TGGCTGTTGTCAACATGGAC+TGG | 0.565171 | 3_4:+78744694 | Msa0525220:CDS |
| GAAGAAGAAGAAGGAGAACA+GGG | 0.570380 | 3_4:+78744419 | Msa0525220:CDS |
| CAGGTTCTATCATGCTGTGG+TGG | 0.572382 | 3_4:+78745590 | Msa0525220:intron |
| AAGGAAGGACAAAATGGGGA+AGG | 0.573640 | 3_4:+78749869 | Msa0525220:CDS |
| AGGAACCTTGTGCTAAGAAG+AGG | 0.574343 | 3_4:+78749691 | Msa0525220:CDS |
| ACATGACGTTGGCCAAGAGA+TGG | 0.575828 | 3_4:+78749470 | Msa0525220:CDS |
| CAAAGCAGATCCAATCAAGA+TGG | 0.576704 | 3_4:+78750633 | Msa0525220:CDS |
| ACATTCCAATCCTGAATGGA+AGG | 0.577659 | 3_4:-78749499 | None:intergenic |
| AGATGGAAATCAAAATTTGA+AGG | 0.579525 | 3_4:+78750668 | Msa0525220:CDS |
| TTTAGAGCCTCTCGAAAACG+AGG | 0.584508 | 3_4:-78744230 | None:intergenic |
| TCAGACTGAGAGGAGAGGAA+TGG | 0.587594 | 3_4:+78751333 | Msa0525220:CDS |
| GCCTAGGGATGTTGTGACAA+AGG | 0.591762 | 3_4:+78745728 | Msa0525220:CDS |
| GAAAATCAGATTTCAAAGTG+AGG | 0.592350 | 3_4:-78744364 | None:intergenic |
| TCTTTGACTACGTAGTTCGC+AGG | 0.593079 | 3_4:-78745828 | None:intergenic |
| ACCTTTGTCACAACATCCCT+AGG | 0.596897 | 3_4:-78745729 | None:intergenic |
| CTGCAGGTTCTATCATGCTG+TGG | 0.598849 | 3_4:+78745587 | Msa0525220:intron |
| CAGTTTGGGAAGCATTTCGG+AGG | 0.599530 | 3_4:+78749565 | Msa0525220:CDS |
| CAGCTAGCACACAAGCAGAA+GGG | 0.600301 | 3_4:+78750464 | Msa0525220:CDS |
| TATTGCTTGCTGATGACAAG+AGG | 0.600984 | 3_4:+78749805 | Msa0525220:CDS |
| ACATAATAACCTCCTGGACA+TGG | 0.601425 | 3_4:+78749746 | Msa0525220:CDS |
| AAAAGAAGCGCAACAAAACG+TGG | 0.602912 | 3_4:-78749945 | None:intergenic |
| GGCTCTAAAGAATGAAACAA+AGG | 0.605109 | 3_4:+78744244 | Msa0525220:CDS |
| CCAATCAAGATGGTCAGACA+AGG | 0.606384 | 3_4:+78750643 | Msa0525220:CDS |
| CATATTTGGTATGAAATCGT+GGG | 0.616683 | 3_4:+78744124 | None:intergenic |
| CCTATCAGAAGAGCAGGATG+CGG | 0.628504 | 3_4:+78744985 | Msa0525220:CDS |
| AGTCAAATGGAACAAATCCA+CGG | 0.635400 | 3_4:-78744917 | None:intergenic |
| GAGTGAAGGATCAGACTGAG+AGG | 0.639540 | 3_4:+78751323 | Msa0525220:CDS |
| TGACGTTGGCCAAGAGATGG+AGG | 0.643765 | 3_4:+78749473 | Msa0525220:CDS |
| ATGAAAGAGGAGAATAGCCG+TGG | 0.646240 | 3_4:+78744900 | Msa0525220:CDS |
| AAGGATCAGACTGAGAGGAG+AGG | 0.654484 | 3_4:+78751328 | Msa0525220:CDS |
| TATAAATTAGGAACTCGAAG+AGG | 0.658700 | 3_4:+78744641 | Msa0525220:intron |
| GAACACTGCATACAAGTCAA+CGG | 0.660177 | 3_4:-78744805 | None:intergenic |
| TCTAAAGAATGAAACAAAGG+TGG | 0.660637 | 3_4:+78744247 | Msa0525220:CDS |
| TTAGAGCCTCTCGAAAACGA+GGG | 0.685733 | 3_4:-78744229 | None:intergenic |
| TTACTGTGCAGAAGTACTCG+AGG | 0.689647 | 3_4:-78745858 | None:intergenic |
| AGAAGAGGAAGAAAGCACAA+AGG | 0.691103 | 3_4:+78749706 | Msa0525220:CDS |
| TCTGCACCAATCGACAAGAG+AGG | 0.697200 | 3_4:+78744323 | Msa0525220:CDS |
| GAAGATGCTGAACATGACGT+TGG | 0.698393 | 3_4:+78749459 | Msa0525220:CDS |
| CAACAGCAACCATGTCCAGG+AGG | 0.702126 | 3_4:-78749755 | None:intergenic |
| GTGTGCACTCCTACAAAACG+AGG | 0.707117 | 3_4:-78744203 | None:intergenic |
| CATGGACTGGAACTATGTGA+AGG | 0.756163 | 3_4:+78744707 | Msa0525220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTATAAAAAA+TGG | + | chr3_4:78751182-78751201 | Msa0525220:intron | 0.0% |
| !! | TTTAAATATTGAAAATGAAA+TGG | + | chr3_4:78750981-78751000 | Msa0525220:intron | 10.0% |
| !! | TTAAATATTGAAAATGAAAT+GGG | + | chr3_4:78750982-78751001 | Msa0525220:intron | 10.0% |
| !!! | TAATTTTTTTTATAGACATA+TGG | + | chr3_4:78751078-78751097 | Msa0525220:intron | 10.0% |
| !!! | TTAGTTCTTATACTTTTTTT+TGG | + | chr3_4:78750941-78750960 | Msa0525220:intron | 15.0% |
| !!! | TAGTTCTTATACTTTTTTTT+GGG | + | chr3_4:78750942-78750961 | Msa0525220:intron | 15.0% |
| !!! | ATTTTTTTATAAATTGTCTC+CGG | - | chr3_4:78751158-78751177 | None:intergenic | 15.0% |
| !!! | AGAAAACTAACTTTTAATTG+TGG | + | chr3_4:78750409-78750428 | Msa0525220:intron | 20.0% |
| !!! | AGTTCTTATACTTTTTTTTG+GGG | + | chr3_4:78750943-78750962 | Msa0525220:intron | 20.0% |
| ! | AAAGACATTTGCATTACTTT+GGG | - | chr3_4:78750509-78750528 | None:intergenic | 25.0% |
| ! | AAAAGACATTTGCATTACTT+TGG | - | chr3_4:78750510-78750529 | None:intergenic | 25.0% |
| ! | AGATGGAAATCAAAATTTGA+AGG | + | chr3_4:78750668-78750687 | Msa0525220:CDS | 25.0% |
| ! | AATTGCACCACTAAAAAAAA+TGG | + | chr3_4:78750843-78750862 | Msa0525220:intron | 25.0% |
| !!! | TTAGCATCCATTTTTTTTAG+TGG | - | chr3_4:78750853-78750872 | None:intergenic | 25.0% |
| ! | TTTGCAATATCAAAGATAAC+AGG | - | chr3_4:78750906-78750925 | None:intergenic | 25.0% |
| ! | AATATTGAAAATGAAATGGG+TGG | + | chr3_4:78750985-78751004 | Msa0525220:intron | 25.0% |
| !! | TTTTTCTCTACTCCAATATA+TGG | + | chr3_4:78751104-78751123 | Msa0525220:intron | 25.0% |
| ! | GTAATGCAAATGTCTTTTGA+TGG | + | chr3_4:78750512-78750531 | Msa0525220:CDS | 30.0% |
| ! | TAACTATCTATCGTGTTGAT+TGG | - | chr3_4:78750728-78750747 | None:intergenic | 30.0% |
| ! | ATTTAGCATGGTGCTAAATA+AGG | - | chr3_4:78750814-78750833 | None:intergenic | 30.0% |
| ATTAGTGTGCATATTTAGCA+TGG | - | chr3_4:78750826-78750845 | None:intergenic | 30.0% | |
| GCATAATTATTGCTTATAGC+CGG | + | chr3_4:78751136-78751155 | Msa0525220:intron | 30.0% | |
| !!! | AATAGTCACTTTTGCAAAGA+TGG | + | chr3_4:78751267-78751286 | Msa0525220:intron | 30.0% |
| TGGAAGAAGAATGAAAAAGA+GGG | + | chr3_4:78751292-78751311 | Msa0525220:CDS | 30.0% | |
| AAGAAAAACAACGCAAGAAG+AGG | + | chr3_4:78744162-78744181 | Msa0525220:CDS | 35.0% | |
| ATGCAGAAGGATAAGAAAGA+AGG | + | chr3_4:78750539-78750558 | Msa0525220:CDS | 35.0% | |
| GAAGGATAAGAAAGAAGGAT+TGG | + | chr3_4:78750544-78750563 | Msa0525220:CDS | 35.0% | |
| ! | TTGAAGGTGTAGAGAAAAAG+AGG | + | chr3_4:78750684-78750703 | Msa0525220:intron | 35.0% |
| TGCAACGATGAACCATATAT+TGG | - | chr3_4:78751119-78751138 | None:intergenic | 35.0% | |
| GTGGAAGAAGAATGAAAAAG+AGG | + | chr3_4:78751291-78751310 | Msa0525220:CDS | 35.0% | |
| ! | ATCAGTGATCCTCGTTTTGT+AGG | + | chr3_4:78744194-78744213 | Msa0525220:CDS | 40.0% |
| !! | TTTTGATGGCATGATGCAGA+AGG | + | chr3_4:78750526-78750545 | Msa0525220:CDS | 40.0% |
| CAAAGCAGATCCAATCAAGA+TGG | + | chr3_4:78750633-78750652 | Msa0525220:CDS | 40.0% | |
| !! | ATCTATCGTGTTGATTGGAG+TGG | - | chr3_4:78750723-78750742 | None:intergenic | 40.0% |
| ! | AGCATGGTGCTAAATAAGGA+AGG | - | chr3_4:78750810-78750829 | None:intergenic | 40.0% |
| ! | GTGGATGCAAGTGTTTGTTA+TGG | + | chr3_4:78751004-78751023 | Msa0525220:intron | 40.0% |
| !! | TCACTTTTGCAAAGATGGAG+TGG | + | chr3_4:78751272-78751291 | Msa0525220:CDS | 40.0% |
| !! | TCAGAAGTGCTGCATATGTC+AGG | + | chr3_4:78750438-78750457 | Msa0525220:intron | 45.0% |
| ACACAAGCAGAAGGGTCAAA+TGG | + | chr3_4:78750472-78750491 | Msa0525220:CDS | 45.0% | |
| CCTTGTCTGACCATCTTGAT+TGG | - | chr3_4:78750646-78750665 | None:intergenic | 45.0% | |
| CCAATCAAGATGGTCAGACA+AGG | + | chr3_4:78750643-78750662 | Msa0525220:CDS | 45.0% | |
| GATGGTCAGACAAGGAAAGA+TGG | + | chr3_4:78750651-78750670 | Msa0525220:CDS | 45.0% | |
| TCCACATCGTAGATATGGCT+GGG | - | chr3_4:78750785-78750804 | None:intergenic | 45.0% | |
| AGGAGTCCACATCGTAGATA+TGG | - | chr3_4:78750790-78750809 | None:intergenic | 45.0% | |
| AGAGGGAAGTGAAAGAGTGA+AGG | + | chr3_4:78751309-78751328 | Msa0525220:CDS | 45.0% | |
| CAGCTAGCACACAAGCAGAA+GGG | + | chr3_4:78750464-78750483 | Msa0525220:CDS | 50.0% | |
| ATGGCTGGGGCATAATAGCA+TGG | - | chr3_4:78750771-78750790 | None:intergenic | 50.0% | |
| CCACATCGTAGATATGGCTG+GGG | - | chr3_4:78750784-78750803 | None:intergenic | 50.0% | |
| GTCCACATCGTAGATATGGC+TGG | - | chr3_4:78750786-78750805 | None:intergenic | 50.0% | |
| GAGTGAAGGATCAGACTGAG+AGG | + | chr3_4:78751323-78751342 | Msa0525220:CDS | 50.0% | |
| AAGGATCAGACTGAGAGGAG+AGG | + | chr3_4:78751328-78751347 | Msa0525220:CDS | 50.0% | |
| TCAGACTGAGAGGAGAGGAA+TGG | + | chr3_4:78751333-78751352 | Msa0525220:CDS | 50.0% | |
| GCAGCTAGCACACAAGCAGA+AGG | + | chr3_4:78750463-78750482 | Msa0525220:CDS | 55.0% | |
| CCCCAGCCATATCTACGATG+TGG | + | chr3_4:78750781-78750800 | Msa0525220:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78744134 | 78751366 | 78744134 | ID=Msa0525220;Name=Msa0525220 |
| chr3_4 | mRNA | 78744134 | 78751366 | 78744134 | ID=Msa0525220-mRNA-1;Parent=Msa0525220;Name=Msa0525220-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0.85|0.62|0.87|1|1|8|0|673 |
| chr3_4 | exon | 78744134 | 78744547 | 78744134 | ID=Msa0525220-mRNA-1:exon:23419;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78744651 | 78744728 | 78744651 | ID=Msa0525220-mRNA-1:exon:23420;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78744804 | 78745006 | 78744804 | ID=Msa0525220-mRNA-1:exon:23421;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78745593 | 78745749 | 78745593 | ID=Msa0525220-mRNA-1:exon:23422;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78745825 | 78745953 | 78745825 | ID=Msa0525220-mRNA-1:exon:23423;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78749315 | 78750012 | 78749315 | ID=Msa0525220-mRNA-1:exon:23424;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78750442 | 78750689 | 78750442 | ID=Msa0525220-mRNA-1:exon:23425;Parent=Msa0525220-mRNA-1 |
| chr3_4 | exon | 78751272 | 78751366 | 78751272 | ID=Msa0525220-mRNA-1:exon:23426;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78744134 | 78744547 | 78744134 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78744651 | 78744728 | 78744651 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78744804 | 78745006 | 78744804 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78745593 | 78745749 | 78745593 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78745825 | 78745953 | 78745825 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78749315 | 78750012 | 78749315 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78750442 | 78750689 | 78750442 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| chr3_4 | CDS | 78751272 | 78751366 | 78751272 | ID=Msa0525220-mRNA-1:cds;Parent=Msa0525220-mRNA-1 |
| Gene Sequence |
| Protein sequence |