Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525750 | XP_013459441.1 | 96.021 | 377 | 13 | 1 | 1 | 377 | 1 | 375 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525750 | sp|Q9LTR2|TGD2_ARATH | 69.948 | 386 | 102 | 4 | 1 | 377 | 1 | 381 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525750 | A0A072UV32 | 96.021 | 377 | 13 | 1 | 1 | 377 | 1 | 375 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003340 | Msa0525750 | 0.802369 | 5.798030e-49 | -8.615850e-47 |
| Msa0525750 | Msa0554700 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525750 | MtrunA17_Chr3g0093291 | 95.225 | 377 | 16 | 1 | 1 | 377 | 1 | 375 | 0.0 | 682 |
| Msa0525750 | MtrunA17_Chr5g0441001 | 72.468 | 385 | 95 | 3 | 1 | 377 | 1 | 382 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525750 | AT3G20320.1 | 69.948 | 386 | 102 | 4 | 1 | 377 | 1 | 381 | 0.0 | 528 |
| Msa0525750 | AT3G20320.3 | 64.808 | 287 | 87 | 4 | 1 | 278 | 1 | 282 | 6.68e-125 | 361 |
| Msa0525750 | AT3G20320.2 | 64.808 | 287 | 87 | 4 | 1 | 278 | 1 | 282 | 6.68e-125 | 361 |
Find 137 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGTCCATTAACTGATTT+TGG | 0.110990 | 3_4:-79304218 | Msa0525750:CDS |
| CTGAGCATATCCTTAATTTA+TGG | 0.117408 | 3_4:-79300718 | Msa0525750:three_prime_UTR |
| GTCCTACCTCAATGTTCTTC+AGG | 0.224980 | 3_4:+79301130 | None:intergenic |
| TAATTCTATTGCAGTGGTTT+TGG | 0.246192 | 3_4:-79304270 | Msa0525750:CDS |
| CCAAATCCAAAATCAGTTAA+TGG | 0.275862 | 3_4:+79304212 | None:intergenic |
| CCAATCAGAGAGTGTGATTT+AGG | 0.276570 | 3_4:+79304656 | None:intergenic |
| ACTACGCTTCATTCAAAATA+AGG | 0.290814 | 3_4:+79300756 | None:intergenic |
| GGTGAATATGAGAGAATAAA+TGG | 0.294608 | 3_4:+79301152 | None:intergenic |
| GTTTATACTTCTTCTTCTTA+AGG | 0.298547 | 3_4:+79304364 | None:intergenic |
| GTGTGATAGAGAAAAGATTA+AGG | 0.308390 | 3_4:-79303781 | Msa0525750:CDS |
| TGGACATTCCCCGTGCCATT+TGG | 0.313226 | 3_4:-79304250 | Msa0525750:CDS |
| TGAGAGAATAAATGGACTTC+TGG | 0.313586 | 3_4:+79301160 | None:intergenic |
| ACAAGTTAAACCATAAATTA+AGG | 0.317207 | 3_4:+79300708 | None:intergenic |
| TAACCAGTCAGGTCTTCTTA+TGG | 0.321768 | 3_4:-79303895 | Msa0525750:CDS |
| TGGATCAGTTCTGTGTTCTC+AGG | 0.321993 | 3_4:+79301180 | None:intergenic |
| TTGTTGAATAATAGTAATAA+TGG | 0.335310 | 3_4:-79304465 | Msa0525750:exon |
| TTCAAATTCGATCCAAGTTC+AGG | 0.335738 | 3_4:-79304100 | Msa0525750:CDS |
| GATTTGGTGGTAGGACCATT+TGG | 0.345153 | 3_4:-79304196 | Msa0525750:CDS |
| GCATTATGTTCTACTTCAAT+TGG | 0.346399 | 3_4:+79300918 | None:intergenic |
| GGGTTACCAAGGGGTAAGTT+TGG | 0.348380 | 3_4:-79303760 | Msa0525750:CDS |
| CAGTTAATGGACGGATAGTT+CGG | 0.350379 | 3_4:+79304225 | None:intergenic |
| TGTCCTCCATCTGCAGAATT+AGG | 0.355239 | 3_4:+79304332 | None:intergenic |
| CACAAGCCTCTGATGATTTG+AGG | 0.370311 | 3_4:-79302732 | Msa0525750:intron |
| CTAAGTTCTGGTATTTCCTA+TGG | 0.371821 | 3_4:-79300813 | Msa0525750:three_prime_UTR |
| GACCTTCTTTATGACATTCC+TGG | 0.376939 | 3_4:+79303811 | None:intergenic |
| TGAAGATCTTCAACCTTTGT+TGG | 0.381598 | 3_4:-79302812 | Msa0525750:CDS |
| GGGCGAGATGTAGAGAAAAT+TGG | 0.395683 | 3_4:-79303708 | Msa0525750:CDS |
| CTTCTTCTTAAGGAATTTGA+TGG | 0.397838 | 3_4:+79304374 | None:intergenic |
| ACGTCTTCGATTTAAAATAT+AGG | 0.407083 | 3_4:+79300627 | None:intergenic |
| TTGGGATATTTACCCGTCTT+GGG | 0.407743 | 3_4:-79303728 | Msa0525750:CDS |
| GGATCAGTTCTGTGTTCTCA+GGG | 0.414025 | 3_4:+79301181 | None:intergenic |
| CAGGCTTGTGGTATATCTAC+TGG | 0.421293 | 3_4:-79304050 | Msa0525750:CDS |
| GTTGGGATATTTACCCGTCT+TGG | 0.425089 | 3_4:-79303729 | Msa0525750:CDS |
| CCTAAATCACACTCTCTGAT+TGG | 0.434743 | 3_4:-79304656 | Msa0525750:five_prime_UTR |
| CACTACTCACAAAGTTGAAT+CGG | 0.435752 | 3_4:+79304492 | None:intergenic |
| ATTTGGTGGTAGGACCATTT+GGG | 0.436304 | 3_4:-79304195 | Msa0525750:CDS |
| TAAGAAGAAGAAGTATAAAC+AGG | 0.437521 | 3_4:-79304361 | Msa0525750:CDS |
| TAGGTGTTAACGTAGGTAAA+AGG | 0.439237 | 3_4:+79300646 | None:intergenic |
| TCATAGTCGATTCTAAGTTC+TGG | 0.443414 | 3_4:-79300825 | Msa0525750:three_prime_UTR |
| TTCCGCTGGTCCGCTTGACC+AGG | 0.454126 | 3_4:-79303829 | Msa0525750:CDS |
| TAAGTTTGGATGCATTGGTT+GGG | 0.456549 | 3_4:-79303746 | Msa0525750:CDS |
| TGCGGTATACTTCCTGAACT+TGG | 0.458322 | 3_4:+79304088 | None:intergenic |
| ACTTAGTTTAGCGTGGTTGA+AGG | 0.462333 | 3_4:-79304126 | Msa0525750:CDS |
| TTGGTTGAAGTTAACCAGTC+AGG | 0.464065 | 3_4:-79303906 | Msa0525750:CDS |
| ACTTCAACCAACGAATTTCG+TGG | 0.464934 | 3_4:+79303918 | None:intergenic |
| AGGGGTAAGTTTGGATGCAT+TGG | 0.467114 | 3_4:-79303751 | Msa0525750:CDS |
| TTGGTTGATGTCCGTGATAG+TGG | 0.469749 | 3_4:-79302793 | Msa0525750:CDS |
| TGTGATAGAGAAAAGATTAA+GGG | 0.472428 | 3_4:-79303780 | Msa0525750:CDS |
| CTCTACATCTCGCCCAAGAC+GGG | 0.472927 | 3_4:+79303716 | None:intergenic |
| TCCTACCTCAATGTTCTTCA+GGG | 0.479771 | 3_4:+79301131 | None:intergenic |
| AATGTTGAGATATGCAATGA+AGG | 0.480956 | 3_4:+79304434 | None:intergenic |
| TGAATAATAGTAATAATGGT+TGG | 0.483450 | 3_4:-79304461 | Msa0525750:exon |
| CATCACACCTTTGTAAGAAG+TGG | 0.486944 | 3_4:+79303627 | None:intergenic |
| TTCATCAACCACAACCTTGA+GGG | 0.489402 | 3_4:-79300872 | Msa0525750:three_prime_UTR |
| GGTAGGACCATTTGGGAAGG+TGG | 0.490797 | 3_4:-79304188 | Msa0525750:CDS |
| TGTTGCCAACAGTTATTCAT+TGG | 0.493544 | 3_4:-79303685 | Msa0525750:CDS |
| GTAAGTTTGGATGCATTGGT+TGG | 0.499526 | 3_4:-79303747 | Msa0525750:CDS |
| ACCAGCGGAAGGCGTAGGAA+TGG | 0.500028 | 3_4:+79303842 | None:intergenic |
| AACAGAATGGGGCATGGAGG+AGG | 0.500633 | 3_4:+79304705 | None:intergenic |
| TCCAACACCACCTTCCCAAA+TGG | 0.501139 | 3_4:+79304181 | None:intergenic |
| GTCTGGTGTCTGACATGTGC+TGG | 0.501519 | 3_4:-79300604 | Msa0525750:three_prime_UTR |
| CCAGCGGAAGGCGTAGGAAT+GGG | 0.502592 | 3_4:+79303843 | None:intergenic |
| CCCATTCCTACGCCTTCCGC+TGG | 0.509552 | 3_4:-79303843 | Msa0525750:CDS |
| ACCATTTGGGAAGGTGGTGT+TGG | 0.510657 | 3_4:-79304182 | Msa0525750:CDS |
| CCGTGTGTGTGCAACAGAAT+GGG | 0.511361 | 3_4:+79304693 | None:intergenic |
| ACGGATAGTTCGGGTCCAAA+TGG | 0.520837 | 3_4:+79304235 | None:intergenic |
| TGAAGAGATACTTGAGCTGC+TGG | 0.522206 | 3_4:+79304527 | None:intergenic |
| TACTAATCAAGTCTCTCAGC+AGG | 0.524421 | 3_4:-79300959 | Msa0525750:CDS |
| AATCATCAGAGGCTTGTGTA+AGG | 0.524998 | 3_4:+79302737 | None:intergenic |
| AATCATACCACGAAATTCGT+TGG | 0.526017 | 3_4:-79303925 | Msa0525750:CDS |
| CTTAGTTTAGCGTGGTTGAA+GGG | 0.526781 | 3_4:-79304125 | Msa0525750:CDS |
| TGTAATCATAGATGAAGATA+AGG | 0.526878 | 3_4:+79304403 | None:intergenic |
| TCCGTGTGTGTGCAACAGAA+TGG | 0.528683 | 3_4:+79304692 | None:intergenic |
| TCTTAAGGAATTTGATGGAA+GGG | 0.530463 | 3_4:+79304379 | None:intergenic |
| CCGTGATAGTGGCTTGTTGA+AGG | 0.541286 | 3_4:-79302782 | Msa0525750:CDS |
| AAAACAAAAGAGGGCCAACC+GGG | 0.548860 | 3_4:+79304750 | None:intergenic |
| CCCATTCTGTTGCACACACA+CGG | 0.549537 | 3_4:-79304693 | Msa0525750:five_prime_UTR |
| ATAAGACCTAATTCTGCAGA+TGG | 0.553495 | 3_4:-79304338 | Msa0525750:CDS |
| AGTTCGGGTCCAAATGGCAC+GGG | 0.554374 | 3_4:+79304241 | None:intergenic |
| GGAAAGTTAAATATTTATCA+CGG | 0.555155 | 3_4:+79300777 | None:intergenic |
| GAACGCCGGTGAGGATCAGA+GGG | 0.557415 | 3_4:-79304028 | Msa0525750:CDS |
| GAAGAATAATTCTATTGCAG+TGG | 0.561053 | 3_4:-79304276 | Msa0525750:CDS |
| CATGTCAGTGTCGTACTGCT+TGG | 0.562886 | 3_4:-79300514 | Msa0525750:three_prime_UTR |
| CGGCAGAATGCAAGAACCAT+AGG | 0.563787 | 3_4:+79300797 | None:intergenic |
| ATGTTGAGATATGCAATGAA+GGG | 0.564364 | 3_4:+79304435 | None:intergenic |
| ATAGATGAAGATAAGGAACT+AGG | 0.566053 | 3_4:+79304410 | None:intergenic |
| TTCTTAAGGAATTTGATGGA+AGG | 0.567821 | 3_4:+79304378 | None:intergenic |
| GACCAGGAATGTCATAAAGA+AGG | 0.568613 | 3_4:-79303813 | Msa0525750:CDS |
| TGGTCAAGCGGACCAGCGGA+AGG | 0.571124 | 3_4:+79303831 | None:intergenic |
| TCATCAACCACAACCTTGAG+GGG | 0.572559 | 3_4:-79300871 | Msa0525750:three_prime_UTR |
| ATGCATCCAAACTTACCCCT+TGG | 0.573447 | 3_4:+79303754 | None:intergenic |
| AGTTAATGGACGGATAGTTC+GGG | 0.573891 | 3_4:+79304226 | None:intergenic |
| ATCCAAAATCAGTTAATGGA+CGG | 0.576802 | 3_4:+79304216 | None:intergenic |
| GGAACGCCGGTGAGGATCAG+AGG | 0.578249 | 3_4:-79304029 | Msa0525750:CDS |
| GAAAAGATTAAGGGTTACCA+AGG | 0.578824 | 3_4:-79303771 | Msa0525750:CDS |
| ATCATCTTCAATCTCAACAA+CGG | 0.579820 | 3_4:+79303953 | None:intergenic |
| TTATGACATTCCTGGTCAAG+CGG | 0.579839 | 3_4:+79303819 | None:intergenic |
| TTCAGCCAATGAATAACTGT+TGG | 0.580371 | 3_4:+79303680 | None:intergenic |
| TGGTATATCTACTGGAACGC+CGG | 0.580404 | 3_4:-79304042 | Msa0525750:CDS |
| TCTCTACATCTCGCCCAAGA+CGG | 0.580799 | 3_4:+79303715 | None:intergenic |
| TTCCTGGTCAAGCGGACCAG+CGG | 0.583120 | 3_4:+79303827 | None:intergenic |
| AAGTGCGAAAAGAAGAGCAC+CGG | 0.586310 | 3_4:+79304145 | None:intergenic |
| ATCAACCACAACCTTGAGGG+GGG | 0.599389 | 3_4:-79300869 | Msa0525750:three_prime_UTR |
| CATCAACCACAACCTTGAGG+GGG | 0.603138 | 3_4:-79300870 | Msa0525750:three_prime_UTR |
| TTTCATCAACCACAACCTTG+AGG | 0.606172 | 3_4:-79300873 | Msa0525750:three_prime_UTR |
| TAAAATATAGGTGTTAACGT+AGG | 0.607659 | 3_4:+79300639 | None:intergenic |
| AGCTAAACCACTTCTTACAA+AGG | 0.607789 | 3_4:-79303634 | Msa0525750:intron |
| GGCGTAGGAATGGGATCTCG+AGG | 0.607911 | 3_4:+79303852 | None:intergenic |
| CTGAGAAAACTCAACTGTTG+CGG | 0.609762 | 3_4:+79304070 | None:intergenic |
| GCTTCAATACTTCTTAACGA+AGG | 0.614392 | 3_4:+79303975 | None:intergenic |
| AAAAGATTAAGGGTTACCAA+GGG | 0.616488 | 3_4:-79303770 | Msa0525750:CDS |
| AGACCTAATTCTGCAGATGG+AGG | 0.617322 | 3_4:-79304335 | Msa0525750:CDS |
| AGGATCAGAGGGGTGACTGT+CGG | 0.623420 | 3_4:-79304017 | Msa0525750:CDS |
| TCTCCATAAGAAGACCTGAC+TGG | 0.628132 | 3_4:+79303892 | None:intergenic |
| CCTTCAACAAGCCACTATCA+CGG | 0.628722 | 3_4:+79302782 | None:intergenic |
| GGTGGTAGGACCATTTGGGA+AGG | 0.630327 | 3_4:-79304191 | Msa0525750:CDS |
| TCAACCACAACCTTGAGGGG+GGG | 0.630984 | 3_4:-79300868 | Msa0525750:three_prime_UTR |
| TAGTTCGGGTCCAAATGGCA+CGG | 0.631375 | 3_4:+79304240 | None:intergenic |
| AGCGGACCAGCGGAAGGCGT+AGG | 0.631377 | 3_4:+79303837 | None:intergenic |
| GTCACCCCTCTGATCCTCAC+CGG | 0.635631 | 3_4:+79304023 | None:intergenic |
| TTAAGTGTAACGACATATGT+TGG | 0.640444 | 3_4:+79300572 | None:intergenic |
| CGTGTGTGTGCAACAGAATG+GGG | 0.646394 | 3_4:+79304694 | None:intergenic |
| GTGTGCAACAGAATGGGGCA+TGG | 0.647779 | 3_4:+79304699 | None:intergenic |
| AGGAAGTTGAGAATTTAACT+CGG | 0.650327 | 3_4:-79302762 | Msa0525750:CDS |
| GATCAGTTCTGTGTTCTCAG+GGG | 0.652651 | 3_4:+79301182 | None:intergenic |
| AGGTTGAAGATCTTCAGCCA+TGG | 0.653485 | 3_4:+79302819 | None:intergenic |
| AATTAACCTCAAATCATCAG+AGG | 0.655914 | 3_4:+79302726 | None:intergenic |
| ATTCACCCTGAAGAACATTG+AGG | 0.656518 | 3_4:-79301136 | Msa0525750:intron |
| CGACACTGACATGTAGACAA+AGG | 0.661655 | 3_4:+79300524 | None:intergenic |
| TCACGGACATCAACCAACAA+AGG | 0.667065 | 3_4:+79302799 | None:intergenic |
| TATCTACTGGAACGCCGGTG+AGG | 0.672873 | 3_4:-79304037 | Msa0525750:CDS |
| GATGATTCTGAAGCAGACGA+CGG | 0.684903 | 3_4:+79304299 | None:intergenic |
| TGCAACAGAATGGGGCATGG+AGG | 0.696492 | 3_4:+79304702 | None:intergenic |
| AAAGATTAAGGGTTACCAAG+GGG | 0.699349 | 3_4:-79303769 | Msa0525750:CDS |
| GTTCGGGTCCAAATGGCACG+GGG | 0.707783 | 3_4:+79304242 | None:intergenic |
| GATGTCTCAGATCAATGCCA+TGG | 0.710763 | 3_4:-79302836 | Msa0525750:intron |
| AACGCCGGTGAGGATCAGAG+GGG | 0.788850 | 3_4:-79304027 | Msa0525750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTAATTAATATTAGAAT+AGG | - | chr3_4:79302581-79302600 | Msa0525750:intron | 10.0% |
| !! | TGTTAATTAATATTAGAATA+GGG | - | chr3_4:79302582-79302601 | Msa0525750:intron | 10.0% |
| !! | TTGTTGAATAATAGTAATAA+TGG | - | chr3_4:79300755-79300774 | Msa0525750:three_prime_UTR | 15.0% |
| !! | GTTAATTAATATTAGAATAG+GGG | - | chr3_4:79302583-79302602 | Msa0525750:intron | 15.0% |
| !! | AATTGCTCATAAAATTTACA+TGG | - | chr3_4:79300646-79300665 | Msa0525750:three_prime_UTR | 20.0% |
| !! | TGAATAATAGTAATAATGGT+TGG | - | chr3_4:79300759-79300778 | Msa0525750:three_prime_UTR | 20.0% |
| !!! | AGCTCAATTTTCAAAATAAT+TGG | + | chr3_4:79301877-79301896 | None:intergenic | 20.0% |
| !!! | CTCTTGTTTTATCTTTAATT+TGG | - | chr3_4:79302532-79302551 | Msa0525750:intron | 20.0% |
| !! | ATTTGAAAACAGAGAAATAA+CGG | + | chr3_4:79303374-79303393 | None:intergenic | 20.0% |
| !! | TTTAAAAAACTCACTCAAAA+TGG | - | chr3_4:79303611-79303630 | Msa0525750:intron | 20.0% |
| !! | TTCAATTATCTTCTGAATTA+AGG | + | chr3_4:79303871-79303890 | None:intergenic | 20.0% |
| !! | GGAAAGTTAAATATTTATCA+CGG | + | chr3_4:79304446-79304465 | None:intergenic | 20.0% |
| !! | ACAAGTTAAACCATAAATTA+AGG | + | chr3_4:79304515-79304534 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTTTTTTTTAGCA+TGG | - | chr3_4:79304529-79304548 | Msa0525750:five_prime_UTR | 20.0% |
| ! | TGTAATCATAGATGAAGATA+AGG | + | chr3_4:79300820-79300839 | None:intergenic | 25.0% |
| ! | GTTTATACTTCTTCTTCTTA+AGG | + | chr3_4:79300859-79300878 | None:intergenic | 25.0% |
| !! | TAAGAAGAAGAAGTATAAAC+AGG | - | chr3_4:79300859-79300878 | Msa0525750:three_prime_UTR | 25.0% |
| ! | TGTGATAGAGAAAAGATTAA+GGG | - | chr3_4:79301440-79301459 | Msa0525750:intron | 25.0% |
| ! | ATATGTCAATAATCACATTC+AGG | - | chr3_4:79301927-79301946 | Msa0525750:intron | 25.0% |
| ! | TTATAATTGATCAATGTGAG+AGG | + | chr3_4:79302851-79302870 | None:intergenic | 25.0% |
| ! | AATACACAGTTTCAAAAATC+TGG | + | chr3_4:79303189-79303208 | None:intergenic | 25.0% |
| !!! | TTTTTGAAACTGTGTATTTG+TGG | - | chr3_4:79303191-79303210 | Msa0525750:intron | 25.0% |
| !!! | TTTTGAAACTGTGTATTTGT+GGG | - | chr3_4:79303192-79303211 | Msa0525750:intron | 25.0% |
| ! | TTAATACTGGAATGGTAAAA+TGG | + | chr3_4:79303317-79303336 | None:intergenic | 25.0% |
| ! | AAATGGAATTAATACTGGAA+TGG | + | chr3_4:79303325-79303344 | None:intergenic | 25.0% |
| ! | TAAGCAAATGGAATTAATAC+TGG | + | chr3_4:79303330-79303349 | None:intergenic | 25.0% |
| ! | TTAATTCCATTTGCTTAACT+AGG | - | chr3_4:79303333-79303352 | Msa0525750:intron | 25.0% |
| ! | TAATAGAAAGATGATCAAAG+TGG | - | chr3_4:79303719-79303738 | Msa0525750:CDS | 25.0% |
| ! | AATAGAAAGATGATCAAAGT+GGG | - | chr3_4:79303720-79303739 | Msa0525750:CDS | 25.0% |
| ! | TTAACATTCTTGAACTAGAA+TGG | - | chr3_4:79303937-79303956 | Msa0525750:CDS | 25.0% |
| !!! | TATTCGGCATTTTAAGTTTA+TGG | + | chr3_4:79304115-79304134 | None:intergenic | 25.0% |
| !!! | AATGTTAGCTCTGATATTTT+AGG | - | chr3_4:79304200-79304219 | Msa0525750:CDS | 25.0% |
| !!! | TGTTTTTTTTTTTAGCATGG+AGG | - | chr3_4:79304532-79304551 | Msa0525750:five_prime_UTR | 25.0% |
| ! | TAAAATATAGGTGTTAACGT+AGG | + | chr3_4:79304584-79304603 | None:intergenic | 25.0% |
| !! | ACGTCTTCGATTTAAAATAT+AGG | + | chr3_4:79304596-79304615 | None:intergenic | 25.0% |
| !! | TTACATGGTTTTCGATTTGT+AGG | - | chr3_4:79300661-79300680 | Msa0525750:three_prime_UTR | 30.0% |
| !! | TACATGGTTTTCGATTTGTA+GGG | - | chr3_4:79300662-79300681 | Msa0525750:three_prime_UTR | 30.0% |
| ATGTTGAGATATGCAATGAA+GGG | + | chr3_4:79300788-79300807 | None:intergenic | 30.0% | |
| AATGTTGAGATATGCAATGA+AGG | + | chr3_4:79300789-79300808 | None:intergenic | 30.0% | |
| ATAGATGAAGATAAGGAACT+AGG | + | chr3_4:79300813-79300832 | None:intergenic | 30.0% | |
| TCTTAAGGAATTTGATGGAA+GGG | + | chr3_4:79300844-79300863 | None:intergenic | 30.0% | |
| TTCTTAAGGAATTTGATGGA+AGG | + | chr3_4:79300845-79300864 | None:intergenic | 30.0% | |
| CTTCTTCTTAAGGAATTTGA+TGG | + | chr3_4:79300849-79300868 | None:intergenic | 30.0% | |
| GAAGAATAATTCTATTGCAG+TGG | - | chr3_4:79300944-79300963 | Msa0525750:exon | 30.0% | |
| ! | TAATTCTATTGCAGTGGTTT+TGG | - | chr3_4:79300950-79300969 | Msa0525750:CDS | 30.0% |
| ATCCAAAATCAGTTAATGGA+CGG | + | chr3_4:79301007-79301026 | None:intergenic | 30.0% | |
| CCAAATCCAAAATCAGTTAA+TGG | + | chr3_4:79301011-79301030 | None:intergenic | 30.0% | |
| !! | CCATTAACTGATTTTGGATT+TGG | - | chr3_4:79301008-79301027 | Msa0525750:CDS | 30.0% |
| !! | TTAACTGATTTTGGATTTGG+TGG | - | chr3_4:79301011-79301030 | Msa0525750:CDS | 30.0% |
| ATCATCTTCAATCTCAACAA+CGG | + | chr3_4:79301270-79301289 | None:intergenic | 30.0% | |
| GTGTGATAGAGAAAAGATTA+AGG | - | chr3_4:79301439-79301458 | Msa0525750:intron | 30.0% | |
| AAAAGATTAAGGGTTACCAA+GGG | - | chr3_4:79301450-79301469 | Msa0525750:intron | 30.0% | |
| GTAATATAGACTGTTGAATC+AGG | - | chr3_4:79301662-79301681 | Msa0525750:intron | 30.0% | |
| TAATCAACAAACTTGACAGA+TGG | - | chr3_4:79301899-79301918 | Msa0525750:intron | 30.0% | |
| ! | TACGAAAAGAGGAATTTTTC+GGG | + | chr3_4:79301955-79301974 | None:intergenic | 30.0% |
| ! | GTACGAAAAGAGGAATTTTT+CGG | + | chr3_4:79301956-79301975 | None:intergenic | 30.0% |
| ! | TAGCTTAAAAGTACGAAAAG+AGG | + | chr3_4:79301966-79301985 | None:intergenic | 30.0% |
| AAACTCTTGTGGACATATTA+TGG | - | chr3_4:79302127-79302146 | Msa0525750:intron | 30.0% | |
| AGGAAGTTGAGAATTTAACT+CGG | - | chr3_4:79302458-79302477 | Msa0525750:intron | 30.0% | |
| AATTAACCTCAAATCATCAG+AGG | + | chr3_4:79302497-79302516 | None:intergenic | 30.0% | |
| ! | TTTTCACCTTTATCTGCAAA+TGG | - | chr3_4:79302711-79302730 | Msa0525750:intron | 30.0% |
| AAGTATAAATGTGCAATACG+TGG | - | chr3_4:79302977-79302996 | Msa0525750:intron | 30.0% | |
| ! | TGGATCAATTGCTATTAGAA+AGG | - | chr3_4:79302997-79303016 | Msa0525750:intron | 30.0% |
| ! | GGATCAATTGCTATTAGAAA+GGG | - | chr3_4:79302998-79303017 | Msa0525750:intron | 30.0% |
| ATTAGAAAGGGATTCTATTC+TGG | - | chr3_4:79303010-79303029 | Msa0525750:intron | 30.0% | |
| TACCCACATTATATAAGGTT+GGG | + | chr3_4:79303218-79303237 | None:intergenic | 30.0% | |
| CATCCTTTATATTTCCAATC+TGG | - | chr3_4:79303273-79303292 | Msa0525750:intron | 30.0% | |
| CTTCCAGATTGGAAATATAA+AGG | + | chr3_4:79303279-79303298 | None:intergenic | 30.0% | |
| CTTTATATTTCCAATCTGGA+AGG | - | chr3_4:79303277-79303296 | Msa0525750:intron | 30.0% | |
| AGAATTCCTAGTTAAGCAAA+TGG | + | chr3_4:79303342-79303361 | None:intergenic | 30.0% | |
| TTTGCTTAACTAGGAATTCT+CGG | - | chr3_4:79303342-79303361 | Msa0525750:intron | 30.0% | |
| ! | TCTCAAGTTTGACAGTTTTA+GGG | - | chr3_4:79303503-79303522 | Msa0525750:intron | 30.0% |
| TCGAATTGAGGTAGTTATAA+AGG | - | chr3_4:79303692-79303711 | Msa0525750:CDS | 30.0% | |
| CGAATTGAGGTAGTTATAAA+GGG | - | chr3_4:79303693-79303712 | Msa0525750:CDS | 30.0% | |
| !!! | TCTGAATTTTGAAATTCCAG+TGG | + | chr3_4:79303796-79303815 | None:intergenic | 30.0% |
| CTGGAATTTCAAAATTCAGA+AGG | - | chr3_4:79303796-79303815 | Msa0525750:CDS | 30.0% | |
| GGTGAATATGAGAGAATAAA+TGG | + | chr3_4:79304071-79304090 | None:intergenic | 30.0% | |
| GCATTATGTTCTACTTCAAT+TGG | + | chr3_4:79304305-79304324 | None:intergenic | 30.0% | |
| !! | TGTGGTTGATGAAAAAACAT+TGG | + | chr3_4:79304341-79304360 | None:intergenic | 30.0% |
| ACTACGCTTCATTCAAAATA+AGG | + | chr3_4:79304467-79304486 | None:intergenic | 30.0% | |
| CTGAGCATATCCTTAATTTA+TGG | - | chr3_4:79304502-79304521 | Msa0525750:five_prime_UTR | 30.0% | |
| TTAAGTGTAACGACATATGT+TGG | + | chr3_4:79304651-79304670 | None:intergenic | 30.0% | |
| ! | TTAAGTGCTCGTTTTATCTA+AGG | + | chr3_4:79304751-79304770 | None:intergenic | 30.0% |
| ACCAAGGGAAAAACAAAAGA+GGG | + | chr3_4:79300482-79300501 | None:intergenic | 35.0% | |
| ACAAGAAGAAGATTACTCAC+TGG | + | chr3_4:79300603-79300622 | None:intergenic | 35.0% | |
| AGCAATTAGTGCATGATGAA+TGG | + | chr3_4:79300633-79300652 | None:intergenic | 35.0% | |
| CACTACTCACAAAGTTGAAT+CGG | + | chr3_4:79300731-79300750 | None:intergenic | 35.0% | |
| ATAAGACCTAATTCTGCAGA+TGG | - | chr3_4:79300882-79300901 | Msa0525750:three_prime_UTR | 35.0% | |
| !! | ATCCGTCCATTAACTGATTT+TGG | - | chr3_4:79301002-79301021 | Msa0525750:CDS | 35.0% |
| !!! | GTTGGACTGTTTTTAGTTTC+CGG | - | chr3_4:79301056-79301075 | Msa0525750:intron | 35.0% |
| TTCAAATTCGATCCAAGTTC+AGG | - | chr3_4:79301120-79301139 | Msa0525750:intron | 35.0% | |
| GCTTCAATACTTCTTAACGA+AGG | + | chr3_4:79301248-79301267 | None:intergenic | 35.0% | |
| AATCATACCACGAAATTCGT+TGG | - | chr3_4:79301295-79301314 | Msa0525750:intron | 35.0% | |
| GAAAAGATTAAGGGTTACCA+AGG | - | chr3_4:79301449-79301468 | Msa0525750:intron | 35.0% | |
| AAAGATTAAGGGTTACCAAG+GGG | - | chr3_4:79301451-79301470 | Msa0525750:intron | 35.0% | |
| !! | TAAGTTTGGATGCATTGGTT+GGG | - | chr3_4:79301474-79301493 | Msa0525750:intron | 35.0% |
| TGTTGCCAACAGTTATTCAT+TGG | - | chr3_4:79301535-79301554 | Msa0525750:intron | 35.0% | |
| TTCAGCCAATGAATAACTGT+TGG | + | chr3_4:79301543-79301562 | None:intergenic | 35.0% | |
| AGCTAAACCACTTCTTACAA+AGG | - | chr3_4:79301586-79301605 | Msa0525750:intron | 35.0% | |
| TGCAACTGTCAAGTTAGTAT+TGG | + | chr3_4:79301699-79301718 | None:intergenic | 35.0% | |
| CGTTTCTGCTGTTATATTGT+TGG | - | chr3_4:79301815-79301834 | Msa0525750:intron | 35.0% | |
| GGCAATTATGCTCAAATGTT+TGG | + | chr3_4:79301856-79301875 | None:intergenic | 35.0% | |
| TTCAGGAGAATGGTAAAAAG+AGG | + | chr3_4:79302027-79302046 | None:intergenic | 35.0% | |
| TCACTTCATTCAAACTCTTG+TGG | - | chr3_4:79302116-79302135 | Msa0525750:intron | 35.0% | |
| CTACAGCAATGGGAAAATAT+GGG | + | chr3_4:79302363-79302382 | None:intergenic | 35.0% | |
| ACTACAGCAATGGGAAAATA+TGG | + | chr3_4:79302364-79302383 | None:intergenic | 35.0% | |
| TGAAGATCTTCAACCTTTGT+TGG | - | chr3_4:79302408-79302427 | Msa0525750:intron | 35.0% | |
| AGATAAAACAAGAGCTAGAG+AGG | + | chr3_4:79302526-79302545 | None:intergenic | 35.0% | |
| TGTGACAGGATTCTATTATC+CGG | + | chr3_4:79302759-79302778 | None:intergenic | 35.0% | |
| TAGGTGAAACTGTGTATTTG+AGG | - | chr3_4:79303117-79303136 | Msa0525750:intron | 35.0% | |
| AGGTGAAACTGTGTATTTGA+GGG | - | chr3_4:79303118-79303137 | Msa0525750:intron | 35.0% | |
| AGACTTCATCCAATAAGGTT+GGG | + | chr3_4:79303144-79303163 | None:intergenic | 35.0% | |
| CTACCCACATTATATAAGGT+TGG | + | chr3_4:79303219-79303238 | None:intergenic | 35.0% | |
| AGCTCTACCCACATTATATA+AGG | + | chr3_4:79303223-79303242 | None:intergenic | 35.0% | |
| TTGCTTAACTAGGAATTCTC+GGG | - | chr3_4:79303343-79303362 | Msa0525750:intron | 35.0% | |
| TCAAATGTTCCTGTGAGATT+AGG | - | chr3_4:79303388-79303407 | Msa0525750:intron | 35.0% | |
| ! | CTCTCAAGTTTGACAGTTTT+AGG | - | chr3_4:79303502-79303521 | Msa0525750:intron | 35.0% |
| !! | CTCAAGTTTGACAGTTTTAG+GGG | - | chr3_4:79303504-79303523 | Msa0525750:intron | 35.0% |
| !! | CCTAGTCTTGTAACAATCAT+TGG | + | chr3_4:79303581-79303600 | None:intergenic | 35.0% |
| CCAATGATTGTTACAAGACT+AGG | - | chr3_4:79303578-79303597 | Msa0525750:intron | 35.0% | |
| TGAAATTCCAGTGGTTCTTA+TGG | + | chr3_4:79303787-79303806 | None:intergenic | 35.0% | |
| ! | TGAGAGAATAAATGGACTTC+TGG | + | chr3_4:79304063-79304082 | None:intergenic | 35.0% |
| !! | TCTGATATTTTAGGCTTCAC+TGG | - | chr3_4:79304209-79304228 | Msa0525750:CDS | 35.0% |
| ! | TCATAGTCGATTCTAAGTTC+TGG | - | chr3_4:79304395-79304414 | Msa0525750:CDS | 35.0% |
| ! | CTAAGTTCTGGTATTTCCTA+TGG | - | chr3_4:79304407-79304426 | Msa0525750:CDS | 35.0% |
| TAGGTGTTAACGTAGGTAAA+AGG | + | chr3_4:79304577-79304596 | None:intergenic | 35.0% | |
| ! | TTTTAAATCGAAGACGTGTC+TGG | - | chr3_4:79304599-79304618 | Msa0525750:intron | 35.0% |
| AAAAACAAAAGAGGGCCAAC+CGG | + | chr3_4:79300474-79300493 | None:intergenic | 40.0% | |
| GACCAAGGGAAAAACAAAAG+AGG | + | chr3_4:79300483-79300502 | None:intergenic | 40.0% | |
| ! | CCAATCAGAGAGTGTGATTT+AGG | + | chr3_4:79300567-79300586 | None:intergenic | 40.0% |
| CCTAAATCACACTCTCTGAT+TGG | - | chr3_4:79300564-79300583 | Msa0525750:three_prime_UTR | 40.0% | |
| ! | AGTTAATGGACGGATAGTTC+GGG | + | chr3_4:79300997-79301016 | None:intergenic | 40.0% |
| ! | CAGTTAATGGACGGATAGTT+CGG | + | chr3_4:79300998-79301017 | None:intergenic | 40.0% |
| !!! | CTGATTTTGGATTTGGTGGT+AGG | - | chr3_4:79301015-79301034 | Msa0525750:CDS | 40.0% |
| ! | ATTTGGTGGTAGGACCATTT+GGG | - | chr3_4:79301025-79301044 | Msa0525750:intron | 40.0% |
| ! | TTTTCGCACTTAGTTTAGCG+TGG | - | chr3_4:79301087-79301106 | Msa0525750:intron | 40.0% |
| ACTTAGTTTAGCGTGGTTGA+AGG | - | chr3_4:79301094-79301113 | Msa0525750:intron | 40.0% | |
| CTTAGTTTAGCGTGGTTGAA+GGG | - | chr3_4:79301095-79301114 | Msa0525750:intron | 40.0% | |
| CTGAGAAAACTCAACTGTTG+CGG | + | chr3_4:79301153-79301172 | None:intergenic | 40.0% | |
| ACTTCAACCAACGAATTTCG+TGG | + | chr3_4:79301305-79301324 | None:intergenic | 40.0% | |
| TTGGTTGAAGTTAACCAGTC+AGG | - | chr3_4:79301314-79301333 | Msa0525750:intron | 40.0% | |
| TAACCAGTCAGGTCTTCTTA+TGG | - | chr3_4:79301325-79301344 | Msa0525750:intron | 40.0% | |
| TTATGACATTCCTGGTCAAG+CGG | + | chr3_4:79301404-79301423 | None:intergenic | 40.0% | |
| GACCAGGAATGTCATAAAGA+AGG | - | chr3_4:79301407-79301426 | Msa0525750:intron | 40.0% | |
| GACCTTCTTTATGACATTCC+TGG | + | chr3_4:79301412-79301431 | None:intergenic | 40.0% | |
| ! | GTAAGTTTGGATGCATTGGT+TGG | - | chr3_4:79301473-79301492 | Msa0525750:intron | 40.0% |
| TTGGGATATTTACCCGTCTT+GGG | - | chr3_4:79301492-79301511 | Msa0525750:intron | 40.0% | |
| CATCACACCTTTGTAAGAAG+TGG | + | chr3_4:79301596-79301615 | None:intergenic | 40.0% | |
| ACTATTAGATGCATCCACTC+TGG | + | chr3_4:79302050-79302069 | None:intergenic | 40.0% | |
| AACACTTGTTCTGACATCAG+AGG | + | chr3_4:79302273-79302292 | None:intergenic | 40.0% | |
| CTGATGTCAGAACAAGTGTT+TGG | - | chr3_4:79302273-79302292 | Msa0525750:intron | 40.0% | |
| TGAGACATCACTACAGCAAT+GGG | + | chr3_4:79302373-79302392 | None:intergenic | 40.0% | |
| AATCATCAGAGGCTTGTGTA+AGG | + | chr3_4:79302486-79302505 | None:intergenic | 40.0% | |
| ATTTGGCATGCATGCATATG+TGG | - | chr3_4:79302549-79302568 | Msa0525750:intron | 40.0% | |
| !! | TGCTTGCTGCATCTAGATTT+TGG | - | chr3_4:79302615-79302634 | Msa0525750:intron | 40.0% |
| !! | GCTTGCTGCATCTAGATTTT+GGG | - | chr3_4:79302616-79302635 | Msa0525750:intron | 40.0% |
| ! | TTTGGGATAGATCCTGAATG+AGG | - | chr3_4:79302633-79302652 | Msa0525750:intron | 40.0% |
| !! | ATGAGGAGTATCGACAGTTA+AGG | - | chr3_4:79302650-79302669 | Msa0525750:intron | 40.0% |
| TATCGACAGTTAAGGTGGTA+AGG | - | chr3_4:79302658-79302677 | Msa0525750:intron | 40.0% | |
| ATCGACAGTTAAGGTGGTAA+GGG | - | chr3_4:79302659-79302678 | Msa0525750:intron | 40.0% | |
| CACCTTTATCTGCAAATGGA+CGG | - | chr3_4:79302715-79302734 | Msa0525750:intron | 40.0% | |
| GCAAAACAGTGGTGAAATAC+CGG | - | chr3_4:79302737-79302756 | Msa0525750:CDS | 40.0% | |
| GGATAATAGAATCCTGTCAC+AGG | - | chr3_4:79302758-79302777 | Msa0525750:CDS | 40.0% | |
| GTGGATGAAATGGATGACAT+TGG | - | chr3_4:79302807-79302826 | Msa0525750:CDS | 40.0% | |
| AGAAAGGGATTCTATTCTGG+AGG | - | chr3_4:79303013-79303032 | Msa0525750:intron | 40.0% | |
| AAGTGCAGCCAGATTACAAA+AGG | - | chr3_4:79303075-79303094 | Msa0525750:intron | 40.0% | |
| ! | ACTTCCCTCCTTTTGTAATC+TGG | + | chr3_4:79303086-79303105 | None:intergenic | 40.0% |
| GAGACTTCATCCAATAAGGT+TGG | + | chr3_4:79303145-79303164 | None:intergenic | 40.0% | |
| GCAAGAGACTTCATCCAATA+AGG | + | chr3_4:79303149-79303168 | None:intergenic | 40.0% | |
| GGCCCAACCTTATATAATGT+GGG | - | chr3_4:79303213-79303232 | Msa0525750:intron | 40.0% | |
| AGAGCTGAGAATTGTGGTAT+CGG | - | chr3_4:79303237-79303256 | Msa0525750:intron | 40.0% | |
| ACTGGAATGGTAAAATGGTC+TGG | + | chr3_4:79303312-79303331 | None:intergenic | 40.0% | |
| TGCTTAACTAGGAATTCTCG+GGG | - | chr3_4:79303344-79303363 | Msa0525750:intron | 40.0% | |
| AGACTCAGTACACAAGTGTT+GGG | + | chr3_4:79303415-79303434 | None:intergenic | 40.0% | |
| TAGACTCAGTACACAAGTGT+TGG | + | chr3_4:79303416-79303435 | None:intergenic | 40.0% | |
| ACTCTTACGAGTAAGCTATG+TGG | - | chr3_4:79303457-79303476 | Msa0525750:intron | 40.0% | |
| TGTGTGTGTGCACAAAAGAA+AGG | - | chr3_4:79303535-79303554 | Msa0525750:intron | 40.0% | |
| GTGTGCACAAAAGAAAGGAA+CGG | - | chr3_4:79303540-79303559 | Msa0525750:intron | 40.0% | |
| CTGCACAATAACAGAATGCA+TGG | - | chr3_4:79303635-79303654 | Msa0525750:CDS | 40.0% | |
| !!! | TGCCATTTTGGGATTGATGA+GGG | - | chr3_4:79303663-79303682 | Msa0525750:CDS | 40.0% |
| ATCCCTCATCAATCCCAAAA+TGG | + | chr3_4:79303668-79303687 | None:intergenic | 40.0% | |
| TTCTGAACCATAAGAACCAC+TGG | - | chr3_4:79303777-79303796 | Msa0525750:CDS | 40.0% | |
| ATTCACCCTGAAGAACATTG+AGG | - | chr3_4:79304084-79304103 | Msa0525750:CDS | 40.0% | |
| TCCTACCTCAATGTTCTTCA+GGG | + | chr3_4:79304092-79304111 | None:intergenic | 40.0% | |
| TACTAATCAAGTCTCTCAGC+AGG | - | chr3_4:79304261-79304280 | Msa0525750:CDS | 40.0% | |
| TTTCATCAACCACAACCTTG+AGG | - | chr3_4:79304347-79304366 | Msa0525750:CDS | 40.0% | |
| TTCATCAACCACAACCTTGA+GGG | - | chr3_4:79304348-79304367 | Msa0525750:CDS | 40.0% | |
| AAAACAAAAGAGGGCCAACC+GGG | + | chr3_4:79300473-79300492 | None:intergenic | 45.0% | |
| !!! | GCCCTCTTTTGTTTTTCCCT+TGG | - | chr3_4:79300478-79300497 | Msa0525750:three_prime_UTR | 45.0% |
| TGAAGAGATACTTGAGCTGC+TGG | + | chr3_4:79300696-79300715 | None:intergenic | 45.0% | |
| AGACCTAATTCTGCAGATGG+AGG | - | chr3_4:79300885-79300904 | Msa0525750:three_prime_UTR | 45.0% | |
| TGTCCTCCATCTGCAGAATT+AGG | + | chr3_4:79300891-79300910 | None:intergenic | 45.0% | |
| !! | GATGATTCTGAAGCAGACGA+CGG | + | chr3_4:79300924-79300943 | None:intergenic | 45.0% |
| !! | GATTTGGTGGTAGGACCATT+TGG | - | chr3_4:79301024-79301043 | Msa0525750:intron | 45.0% |
| ! | AAGTGCGAAAAGAAGAGCAC+CGG | + | chr3_4:79301078-79301097 | None:intergenic | 45.0% |
| TGCGGTATACTTCCTGAACT+TGG | + | chr3_4:79301135-79301154 | None:intergenic | 45.0% | |
| ! | CGCAACAGTTGAGTTTTCTC+AGG | - | chr3_4:79301151-79301170 | Msa0525750:CDS | 45.0% |
| ! | GTTGAGTTTTCTCAGGCTTG+TGG | - | chr3_4:79301158-79301177 | Msa0525750:CDS | 45.0% |
| CAGGCTTGTGGTATATCTAC+TGG | - | chr3_4:79301170-79301189 | Msa0525750:CDS | 45.0% | |
| TGGTATATCTACTGGAACGC+CGG | - | chr3_4:79301178-79301197 | Msa0525750:CDS | 45.0% | |
| TCTCCATAAGAAGACCTGAC+TGG | + | chr3_4:79301331-79301350 | None:intergenic | 45.0% | |
| ATGCATCCAAACTTACCCCT+TGG | + | chr3_4:79301469-79301488 | None:intergenic | 45.0% | |
| AGGGGTAAGTTTGGATGCAT+TGG | - | chr3_4:79301469-79301488 | Msa0525750:intron | 45.0% | |
| GTTGGGATATTTACCCGTCT+TGG | - | chr3_4:79301491-79301510 | Msa0525750:intron | 45.0% | |
| GGGCGAGATGTAGAGAAAAT+TGG | - | chr3_4:79301512-79301531 | Msa0525750:intron | 45.0% | |
| CTGAGACATCACTACAGCAA+TGG | + | chr3_4:79302374-79302393 | None:intergenic | 45.0% | |
| GATGTCTCAGATCAATGCCA+TGG | - | chr3_4:79302384-79302403 | Msa0525750:intron | 45.0% | |
| AGGTTGAAGATCTTCAGCCA+TGG | + | chr3_4:79302404-79302423 | None:intergenic | 45.0% | |
| TCACGGACATCAACCAACAA+AGG | + | chr3_4:79302424-79302443 | None:intergenic | 45.0% | |
| ! | TTGGTTGATGTCCGTGATAG+TGG | - | chr3_4:79302427-79302446 | Msa0525750:intron | 45.0% |
| CCTTCAACAAGCCACTATCA+CGG | + | chr3_4:79302441-79302460 | None:intergenic | 45.0% | |
| CACAAGCCTCTGATGATTTG+AGG | - | chr3_4:79302488-79302507 | Msa0525750:intron | 45.0% | |
| TCTAGATGCAGCAAGCACAA+TGG | + | chr3_4:79302612-79302631 | None:intergenic | 45.0% | |
| ACTGTCGATACTCCTCATTC+AGG | + | chr3_4:79302648-79302667 | None:intergenic | 45.0% | |
| !! | AGGAGTATCGACAGTTAAGG+TGG | - | chr3_4:79302653-79302672 | Msa0525750:intron | 45.0% |
| TGCCGTCCATTTGCAGATAA+AGG | + | chr3_4:79302720-79302739 | None:intergenic | 45.0% | |
| CATCCATTTCATCCACTGCT+TGG | + | chr3_4:79302803-79302822 | None:intergenic | 45.0% | |
| TGCAGCCAGATTACAAAAGG+AGG | - | chr3_4:79303078-79303097 | Msa0525750:intron | 45.0% | |
| GCAGCCAGATTACAAAAGGA+GGG | - | chr3_4:79303079-79303098 | Msa0525750:intron | 45.0% | |
| AGGGAAGTCGAAGTTAGAGT+AGG | - | chr3_4:79303098-79303117 | Msa0525750:intron | 45.0% | |
| ATTTGAGGGCCCAACCTTAT+TGG | - | chr3_4:79303132-79303151 | Msa0525750:intron | 45.0% | |
| GGGCCCAACCTTATATAATG+TGG | - | chr3_4:79303212-79303231 | Msa0525750:intron | 45.0% | |
| !! | AGAATTGTGGTATCGGTCTC+TGG | - | chr3_4:79303244-79303263 | Msa0525750:intron | 45.0% |
| !! | GAATTGTGGTATCGGTCTCT+GGG | - | chr3_4:79303245-79303264 | Msa0525750:intron | 45.0% |
| !!! | TGCATGGACAAGTGCCATTT+TGG | - | chr3_4:79303651-79303670 | Msa0525750:CDS | 45.0% |
| !!! | GCATGGACAAGTGCCATTTT+GGG | - | chr3_4:79303652-79303671 | Msa0525750:CDS | 45.0% |
| !!! | GTGCCATTTTGGGATTGATG+AGG | - | chr3_4:79303662-79303681 | Msa0525750:CDS | 45.0% |
| TGAGGGATGATGTCGAATTG+AGG | - | chr3_4:79303680-79303699 | Msa0525750:CDS | 45.0% | |
| GATCAGTTCTGTGTTCTCAG+GGG | + | chr3_4:79304041-79304060 | None:intergenic | 45.0% | |
| GGATCAGTTCTGTGTTCTCA+GGG | + | chr3_4:79304042-79304061 | None:intergenic | 45.0% | |
| TGGATCAGTTCTGTGTTCTC+AGG | + | chr3_4:79304043-79304062 | None:intergenic | 45.0% | |
| ACCCTGAAGAACATTGAGGT+AGG | - | chr3_4:79304088-79304107 | Msa0525750:CDS | 45.0% | |
| GTCCTACCTCAATGTTCTTC+AGG | + | chr3_4:79304093-79304112 | None:intergenic | 45.0% | |
| TCATCAACCACAACCTTGAG+GGG | - | chr3_4:79304349-79304368 | Msa0525750:CDS | 45.0% | |
| CGACACTGACATGTAGACAA+AGG | + | chr3_4:79304699-79304718 | None:intergenic | 45.0% | |
| !! | CTTATTATTAATTATATATT+CGG | + | chr3_4:79304131-79304150 | None:intergenic | 5.0% |
| !!! | TTAATAATAAGAATTTTTTT+TGG | - | chr3_4:79304140-79304159 | Msa0525750:CDS | 5.0% |
| GGAGAGAGAGAGAAGACCAA+GGG | + | chr3_4:79300497-79300516 | None:intergenic | 50.0% | |
| AGGAGAGAGAGAGAAGACCA+AGG | + | chr3_4:79300498-79300517 | None:intergenic | 50.0% | |
| CGTGTGTGTGCAACAGAATG+GGG | + | chr3_4:79300529-79300548 | None:intergenic | 50.0% | |
| CCGTGTGTGTGCAACAGAAT+GGG | + | chr3_4:79300530-79300549 | None:intergenic | 50.0% | |
| CCCATTCTGTTGCACACACA+CGG | - | chr3_4:79300527-79300546 | Msa0525750:three_prime_UTR | 50.0% | |
| TCCGTGTGTGTGCAACAGAA+TGG | + | chr3_4:79300531-79300550 | None:intergenic | 50.0% | |
| TAGTTCGGGTCCAAATGGCA+CGG | + | chr3_4:79300983-79301002 | None:intergenic | 50.0% | |
| ACGGATAGTTCGGGTCCAAA+TGG | + | chr3_4:79300988-79301007 | None:intergenic | 50.0% | |
| ACCATTTGGGAAGGTGGTGT+TGG | - | chr3_4:79301038-79301057 | Msa0525750:intron | 50.0% | |
| TCCAACACCACCTTCCCAAA+TGG | + | chr3_4:79301042-79301061 | None:intergenic | 50.0% | |
| GGGTTACCAAGGGGTAAGTT+TGG | - | chr3_4:79301460-79301479 | Msa0525750:intron | 50.0% | |
| TCTCTACATCTCGCCCAAGA+CGG | + | chr3_4:79301508-79301527 | None:intergenic | 50.0% | |
| ACCATTCTCCTGAACCAGAG+TGG | - | chr3_4:79302033-79302052 | Msa0525750:intron | 50.0% | |
| ! | TCCACTCTGGTTCAGGAGAA+TGG | + | chr3_4:79302037-79302056 | None:intergenic | 50.0% |
| ! | AGATGCATCCACTCTGGTTC+AGG | + | chr3_4:79302044-79302063 | None:intergenic | 50.0% |
| !! | CCGTGATAGTGGCTTGTTGA+AGG | - | chr3_4:79302438-79302457 | Msa0525750:intron | 50.0% |
| GCAAATGGACGGCAAAACAG+TGG | - | chr3_4:79302726-79302745 | Msa0525750:intron | 50.0% | |
| AGAATCCTGTCACAGGTGTC+TGG | - | chr3_4:79302765-79302784 | Msa0525750:CDS | 50.0% | |
| ATTCACCAGACACCTGTGAC+AGG | + | chr3_4:79302773-79302792 | None:intergenic | 50.0% | |
| TGTCACAGGTGTCTGGTGAA+TGG | - | chr3_4:79302772-79302791 | Msa0525750:CDS | 50.0% | |
| TGAATGGATGTGCCAAGCAG+TGG | - | chr3_4:79302788-79302807 | Msa0525750:CDS | 50.0% | |
| GTGCCAAGCAGTGGATGAAA+TGG | - | chr3_4:79302797-79302816 | Msa0525750:CDS | 50.0% | |
| GTGGGTAGAGCTGAGAATTG+TGG | - | chr3_4:79303231-79303250 | Msa0525750:intron | 50.0% | |
| TTTCCAATCTGGAAGGAGCC+TGG | - | chr3_4:79303284-79303303 | Msa0525750:intron | 50.0% | |
| ! | TGGTAAAATGGTCTGGAGCC+AGG | + | chr3_4:79303305-79303324 | None:intergenic | 50.0% |
| GTGTTGGGACCTAATCTCAC+AGG | + | chr3_4:79303400-79303419 | None:intergenic | 50.0% | |
| CATCAACCACAACCTTGAGG+GGG | - | chr3_4:79304350-79304369 | Msa0525750:CDS | 50.0% | |
| ATCAACCACAACCTTGAGGG+GGG | - | chr3_4:79304351-79304370 | Msa0525750:CDS | 50.0% | |
| ! | TTACTGTTTTCCCCCCCTCA+AGG | + | chr3_4:79304365-79304384 | None:intergenic | 50.0% |
| CGGCAGAATGCAAGAACCAT+AGG | + | chr3_4:79304426-79304445 | None:intergenic | 50.0% | |
| CATGTCAGTGTCGTACTGCT+TGG | - | chr3_4:79304706-79304725 | Msa0525750:five_prime_UTR | 50.0% | |
| AACAGAATGGGGCATGGAGG+AGG | + | chr3_4:79300518-79300537 | None:intergenic | 55.0% | |
| TGCAACAGAATGGGGCATGG+AGG | + | chr3_4:79300521-79300540 | None:intergenic | 55.0% | |
| GTGTGCAACAGAATGGGGCA+TGG | + | chr3_4:79300524-79300543 | None:intergenic | 55.0% | |
| ! | TGGACATTCCCCGTGCCATT+TGG | - | chr3_4:79300970-79300989 | Msa0525750:CDS | 55.0% |
| AGTTCGGGTCCAAATGGCAC+GGG | + | chr3_4:79300982-79301001 | None:intergenic | 55.0% | |
| GGTGGTAGGACCATTTGGGA+AGG | - | chr3_4:79301029-79301048 | Msa0525750:intron | 55.0% | |
| GGTAGGACCATTTGGGAAGG+TGG | - | chr3_4:79301032-79301051 | Msa0525750:intron | 55.0% | |
| TATCTACTGGAACGCCGGTG+AGG | - | chr3_4:79301183-79301202 | Msa0525750:CDS | 55.0% | |
| AGGATCAGAGGGGTGACTGT+CGG | - | chr3_4:79301203-79301222 | Msa0525750:CDS | 55.0% | |
| CTCTACATCTCGCCCAAGAC+GGG | + | chr3_4:79301507-79301526 | None:intergenic | 55.0% | |
| TCTGGCGCGCATCAAACTTC+TGG | + | chr3_4:79303171-79303190 | None:intergenic | 55.0% | |
| TCAACCACAACCTTGAGGGG+GGG | - | chr3_4:79304352-79304371 | Msa0525750:CDS | 55.0% | |
| ! | TTTTCCCCCCCTCAAGGTTG+TGG | + | chr3_4:79304359-79304378 | None:intergenic | 55.0% |
| GTCTGGTGTCTGACATGTGC+TGG | - | chr3_4:79304616-79304635 | Msa0525750:intron | 55.0% | |
| GTTCGGGTCCAAATGGCACG+GGG | + | chr3_4:79300981-79301000 | None:intergenic | 60.0% | |
| GAACGCCGGTGAGGATCAGA+GGG | - | chr3_4:79301192-79301211 | Msa0525750:CDS | 60.0% | |
| AACGCCGGTGAGGATCAGAG+GGG | - | chr3_4:79301193-79301212 | Msa0525750:CDS | 60.0% | |
| GTCACCCCTCTGATCCTCAC+CGG | + | chr3_4:79301200-79301219 | None:intergenic | 60.0% | |
| GGCGTAGGAATGGGATCTCG+AGG | + | chr3_4:79301371-79301390 | None:intergenic | 60.0% | |
| ! | CCAGCGGAAGGCGTAGGAAT+GGG | + | chr3_4:79301380-79301399 | None:intergenic | 60.0% |
| ! | ACCAGCGGAAGGCGTAGGAA+TGG | + | chr3_4:79301381-79301400 | None:intergenic | 60.0% |
| TTCCTGGTCAAGCGGACCAG+CGG | + | chr3_4:79301396-79301415 | None:intergenic | 60.0% | |
| GAGCCAGGCTCCTTCCAGAT+TGG | + | chr3_4:79303290-79303309 | None:intergenic | 60.0% | |
| GGAACGCCGGTGAGGATCAG+AGG | - | chr3_4:79301191-79301210 | Msa0525750:CDS | 65.0% | |
| CCCATTCCTACGCCTTCCGC+TGG | - | chr3_4:79301377-79301396 | Msa0525750:intron | 65.0% | |
| TGGTCAAGCGGACCAGCGGA+AGG | + | chr3_4:79301392-79301411 | None:intergenic | 65.0% | |
| TTCCGCTGGTCCGCTTGACC+AGG | - | chr3_4:79301391-79301410 | Msa0525750:intron | 65.0% | |
| ! | AGCGGACCAGCGGAAGGCGT+AGG | + | chr3_4:79301386-79301405 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 79300457 | 79304785 | 79300457 | ID=Msa0525750;Name=Msa0525750 |
| chr3_4 | mRNA | 79300457 | 79304785 | 79300457 | ID=Msa0525750-mRNA-1;Parent=Msa0525750;Name=Msa0525750-mRNA-1;_AED=0.06;_eAED=0.06;_QI=237|1|1|1|0.75|0.6|5|493|377 |
| chr3_4 | exon | 79300457 | 79301042 | 79300457 | ID=Msa0525750-mRNA-1:exon:23749;Parent=Msa0525750-mRNA-1 |
| chr3_4 | exon | 79301137 | 79301227 | 79301137 | ID=Msa0525750-mRNA-1:exon:23748;Parent=Msa0525750-mRNA-1 |
| chr3_4 | exon | 79302733 | 79302848 | 79302733 | ID=Msa0525750-mRNA-1:exon:23747;Parent=Msa0525750-mRNA-1 |
| chr3_4 | exon | 79303635 | 79304559 | 79303635 | ID=Msa0525750-mRNA-1:exon:23746;Parent=Msa0525750-mRNA-1 |
| chr3_4 | exon | 79304640 | 79304785 | 79304640 | ID=Msa0525750-mRNA-1:exon:23745;Parent=Msa0525750-mRNA-1 |
| chr3_4 | five_prime_UTR | 79304640 | 79304785 | 79304640 | ID=Msa0525750-mRNA-1:five_prime_utr;Parent=Msa0525750-mRNA-1 |
| chr3_4 | five_prime_UTR | 79304469 | 79304559 | 79304469 | ID=Msa0525750-mRNA-1:five_prime_utr;Parent=Msa0525750-mRNA-1 |
| chr3_4 | CDS | 79303635 | 79304468 | 79303635 | ID=Msa0525750-mRNA-1:cds;Parent=Msa0525750-mRNA-1 |
| chr3_4 | CDS | 79302733 | 79302848 | 79302733 | ID=Msa0525750-mRNA-1:cds;Parent=Msa0525750-mRNA-1 |
| chr3_4 | CDS | 79301137 | 79301227 | 79301137 | ID=Msa0525750-mRNA-1:cds;Parent=Msa0525750-mRNA-1 |
| chr3_4 | CDS | 79300950 | 79301042 | 79300950 | ID=Msa0525750-mRNA-1:cds;Parent=Msa0525750-mRNA-1 |
| chr3_4 | three_prime_UTR | 79300457 | 79300949 | 79300457 | ID=Msa0525750-mRNA-1:three_prime_utr;Parent=Msa0525750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
