AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554700 MtrunA17_Chr4g0004811 96.575 146 4 1 1 145 1 146 3.42e-96 273
Msa0554700 MtrunA17_Chr8g0345861 42.276 123 68 2 25 144 46 168 2.68e-26 97.4
Msa0554700 MtrunA17_Chr7g0276381 35.664 143 84 1 10 144 35 177 4.65e-26 97.1
Msa0554700 MtrunA17_Chr5g0412411 45.333 75 41 0 71 145 110 184 7.48e-18 75.9
Msa0554700 MtrunA17_Chr7g0275281 29.936 157 93 2 5 144 3 159 5.61e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554700 AT1G52220.1 60.256 156 51 1 1 145 1 156 1.58e-57 176
Msa0554700 AT1G52220.2 59.615 156 51 2 1 145 1 155 4.73e-55 170
Msa0554700 AT1G52220.4 51.748 143 52 3 1 126 1 143 1.08e-37 125
Msa0554700 AT1G52220.3 45.513 156 45 2 1 145 1 127 9.94e-33 112
Msa0554700 AT2G46820.2 49.425 87 44 0 58 144 86 172 1.85e-27 100
Msa0554700 AT2G46820.1 49.425 87 44 0 58 144 86 172 1.85e-27 100
Msa0554700 AT4G01150.1 33.663 101 67 0 44 144 62 162 1.67e-16 72.0
Msa0554700 AT4G38100.1 37.143 70 42 1 75 144 122 189 7.54e-12 60.5
Msa0554700 AT4G38100.2 37.143 70 42 1 75 144 82 149 8.16e-12 59.7

Find 51 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGAAACAGAGAAATTT+TGG 0.146035 4_1:-52332849 None:intergenic
CCGATCAGTTCCAACGAAAT+TGG 0.154903 4_1:-52334520 None:intergenic
CACATTCTAGAGTAAAATTT+TGG 0.181126 4_1:-52335754 None:intergenic
TGAAATCAGCTTATCCTTAA+TGG 0.193614 4_1:+52336037 Msa0554700:three_prime_UTR
CCATTTGTTGTGAAGGCTTC+TGG 0.198643 4_1:+52333713 Msa0554700:CDS
TCTGCTATCATTGAATTAAA+TGG 0.203365 4_1:+52332759 Msa0554700:exon
TTTGTGCTTTCCTATTTATT+TGG 0.215918 4_1:-52332424 None:intergenic
CCTAACCATACCAAATAAAT+AGG 0.269262 4_1:+52332414 None:intergenic
TTCTCTGTTTCTCTTCTTCC+AGG 0.283501 4_1:+52332856 Msa0554700:CDS
CAAATCAACTTCAGATATCT+TGG 0.295889 4_1:+52335714 Msa0554700:CDS
AAGAGGTTATCTTACCATTA+AGG 0.299429 4_1:-52336051 None:intergenic
GAGGACCGGTTGGGACTATT+TGG 0.314434 4_1:+52333900 Msa0554700:CDS
TGCAGCTGTAGTAGCACTTT+GGG 0.320376 4_1:+52333932 Msa0554700:CDS
TCCAACGAAATTGGGATAAC+TGG 0.346823 4_1:-52334511 None:intergenic
AAGTTGATTTGTTCAAGATT+TGG 0.346842 4_1:-52335702 None:intergenic
CGGTTGGGACTATTTGGTTT+GGG 0.351065 4_1:+52333906 Msa0554700:CDS
CCGGTTGGGACTATTTGGTT+TGG 0.371014 4_1:+52333905 Msa0554700:CDS
CGATCAGTTCCAACGAAATT+GGG 0.380906 4_1:-52334519 None:intergenic
TGGTGGCAAGCTTGCAATAA+TGG 0.403458 4_1:-52332785 None:intergenic
CCAGAAGCCTTCACAACAAA+TGG 0.404317 4_1:-52333713 None:intergenic
GCTTTCCTATTTATTTGGTA+TGG 0.406013 4_1:-52332419 None:intergenic
TTGCAGCTGTAGTAGCACTT+TGG 0.420908 4_1:+52333931 Msa0554700:CDS
GATATAAATGCTTACCGGTC+AGG 0.421505 4_1:-52334912 None:intergenic
AATAAATAGGAAAGCACAAA+AGG 0.458701 4_1:+52332427 Msa0554700:five_prime_UTR
GGGTTGCTCTACTCTACTGC+TGG 0.459095 4_1:-52332558 None:intergenic
GCCAGTTATCCCAATTTCGT+TGG 0.462537 4_1:+52334510 Msa0554700:CDS
AATAGTCCCAACCGGTCCTC+AGG 0.474443 4_1:-52333897 None:intergenic
ATCTCTTATTCAAGCCTGAC+CGG 0.490702 4_1:+52334898 Msa0554700:CDS
AAATCAACTTCAGATATCTT+GGG 0.494856 4_1:+52335715 Msa0554700:CDS
GATAACTGGCAATTTGTCAA+TGG 0.502698 4_1:-52334497 None:intergenic
ATCACATAAGGTCACATAAG+AGG 0.503503 4_1:-52336068 None:intergenic
CCACCACCATTGTTGCTCCA+TGG 0.507168 4_1:+52332802 Msa0554700:CDS
TAACGTTCCATTTGTTGTGA+AGG 0.517813 4_1:+52333706 Msa0554700:CDS
CTTGCACTGTAATTTGACAT+AGG 0.518596 4_1:-52335814 None:intergenic
CCAATTTCGTTGGAACTGAT+CGG 0.531466 4_1:+52334520 Msa0554700:CDS
CCAAACCAAATAGTCCCAAC+CGG 0.548080 4_1:-52333905 None:intergenic
GATAAACCTGAGGACCGGTT+GGG 0.551960 4_1:+52333891 Msa0554700:CDS
ACTTGACTTCATTTAAGTCA+AGG 0.552763 4_1:-52336000 None:intergenic
GGATAAACCTGAGGACCGGT+TGG 0.565385 4_1:+52333890 Msa0554700:CDS
CTTCTACCATGGAGCAACAA+TGG 0.573910 4_1:-52332808 None:intergenic
TCATTTAAGTCAAGGTTCAG+AGG 0.577131 4_1:-52335992 None:intergenic
CCATGGAGCAACAATGGTGG+TGG 0.581646 4_1:-52332802 None:intergenic
CTGAAAATAAGCTTCTACCA+TGG 0.582987 4_1:-52332819 None:intergenic
GGCATCAACAAATTTGATAG+CGG 0.597711 4_1:+52333953 Msa0554700:CDS
CTTGAATAAGAGATAGCGAT+AGG 0.600486 4_1:-52334889 None:intergenic
AGTGGGATAAACCTGAGGAC+CGG 0.644489 4_1:+52333886 Msa0554700:intron
CTACCATGGAGCAACAATGG+TGG 0.656243 4_1:-52332805 None:intergenic
AGTAGAGTAGAGCAACCCAA+AGG 0.661551 4_1:+52332563 Msa0554700:five_prime_UTR
TGTACACAAAGGTAACACAA+TGG 0.688380 4_1:-52335860 None:intergenic
ACTGCTGGAAATGATGAGTG+AGG 0.708064 4_1:-52332543 None:intergenic
TAAACAGTGGGATAAACCTG+AGG 0.721610 4_1:+52333881 Msa0554700:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTATTTTATTTTTTG+TGG + chr4_1:52332479-52332498 Msa0554700:five_prime_UTR 10.0%
!!! TTAAAGACTATTTTTTTTAT+GGG - chr4_1:52334422-52334441 None:intergenic 10.0%
!!! ATTAAAGACTATTTTTTTTA+TGG - chr4_1:52334423-52334442 None:intergenic 10.0%
!!! TATATCATTGACTTAAAATT+AGG + chr4_1:52332652-52332671 Msa0554700:intron 15.0%
!!! TCAATTTTCTTGATTATTAT+CGG + chr4_1:52333117-52333136 Msa0554700:intron 15.0%
!!! TAAAGACTATTTTTTTTATG+GGG - chr4_1:52334421-52334440 None:intergenic 15.0%
!! CAAGTATTAAGAAAAAAATA+CGG - chr4_1:52334609-52334628 None:intergenic 15.0%
!!! ATTATAGTTTCTCTAATTTT+TGG - chr4_1:52334730-52334749 None:intergenic 15.0%
!!! TTTCTTTTCTTTAATTACTA+TGG - chr4_1:52335065-52335084 None:intergenic 15.0%
!! AGAAATAAAACAATACCTTT+GGG - chr4_1:52332581-52332600 None:intergenic 20.0%
!! AAGAAATAAAACAATACCTT+TGG - chr4_1:52332582-52332601 None:intergenic 20.0%
!! AGATACTAACAAGAATTAAA+AGG - chr4_1:52332629-52332648 None:intergenic 20.0%
!!! AAAGAGAAAATTTTAGTTCA+TGG - chr4_1:52332681-52332700 None:intergenic 20.0%
!! AAGTATGACATTGTTTAAAA+CGG + chr4_1:52333018-52333037 Msa0554700:intron 20.0%
!! TGCTTGAACTAATTAAAAAT+TGG + chr4_1:52333223-52333242 Msa0554700:intron 20.0%
!! TTGAACTAATTAAAAATTGG+CGG + chr4_1:52333226-52333245 Msa0554700:intron 20.0%
!! ATCAACTGTAAAAAATTTCA+GGG - chr4_1:52333483-52333502 None:intergenic 20.0%
!!! AAAAATGAGATTAAGTTGTA+AGG - chr4_1:52334099-52334118 None:intergenic 20.0%
!! ATTTACATTAGGATTTCTTT+GGG - chr4_1:52334243-52334262 None:intergenic 20.0%
!!! AAAGACTATTTTTTTTATGG+GGG - chr4_1:52334420-52334439 None:intergenic 20.0%
!! AGAAAAAATCAAAATCAGAA+TGG - chr4_1:52334458-52334477 None:intergenic 20.0%
!! AAATAATGTATAAACTCATG+AGG + chr4_1:52334573-52334592 Msa0554700:intron 20.0%
!!! AATTTATTTTTCTGTTTCAG+TGG + chr4_1:52334862-52334881 Msa0554700:intron 20.0%
!!! AGAATAAATAGTTTTTTGTC+AGG + chr4_1:52335222-52335241 Msa0554700:intron 20.0%
!!! GAATAAATAGTTTTTTGTCA+GGG + chr4_1:52335223-52335242 Msa0554700:intron 20.0%
!!! AATAAATAGTTTTTTGTCAG+GGG + chr4_1:52335224-52335243 Msa0554700:intron 20.0%
!! TAAATAAGGGAAAAATATAG+TGG - chr4_1:52335372-52335391 None:intergenic 20.0%
!! AACTGAGAAGATATAAATAA+GGG - chr4_1:52335385-52335404 None:intergenic 20.0%
! TTTGTGCTTTCCTATTTATT+TGG - chr4_1:52332427-52332446 None:intergenic 25.0%
!! AATAAATAGGAAAGCACAAA+AGG + chr4_1:52332427-52332446 Msa0554700:five_prime_UTR 25.0%
! TCTGCTATCATTGAATTAAA+TGG + chr4_1:52332759-52332778 Msa0554700:exon 25.0%
!! AGTATGACATTGTTTAAAAC+GGG + chr4_1:52333019-52333038 Msa0554700:intron 25.0%
! TCAACTGTAAAAAATTTCAG+GGG - chr4_1:52333482-52333501 None:intergenic 25.0%
! CATCAACTGTAAAAAATTTC+AGG - chr4_1:52333484-52333503 None:intergenic 25.0%
!! TCACATGCAACATTTTTAAT+TGG - chr4_1:52333527-52333546 None:intergenic 25.0%
! TAAAAAAAGACGAAAACGAT+GGG - chr4_1:52333818-52333837 None:intergenic 25.0%
! TTAAAAAAAGACGAAAACGA+TGG - chr4_1:52333819-52333838 None:intergenic 25.0%
! TTTGTTGATGTTTAAACAGT+GGG + chr4_1:52333869-52333888 Msa0554700:intron 25.0%
! AAATTCTACAATGACGAATT+CGG - chr4_1:52334010-52334029 None:intergenic 25.0%
! GATTTACATTAGGATTTCTT+TGG - chr4_1:52334244-52334263 None:intergenic 25.0%
! AAAATTAATGTCACCAATGT+CGG - chr4_1:52334354-52334373 None:intergenic 25.0%
! ATAGCTAGATATGTTTACAA+AGG - chr4_1:52334379-52334398 None:intergenic 25.0%
!! TTCTGTGATATTTTGTGTAT+AGG + chr4_1:52334474-52334493 Msa0554700:intron 25.0%
!!! TTTCTCTAATTTTTGGAACA+GGG - chr4_1:52334723-52334742 None:intergenic 25.0%
!!! GATGAATTGATGGATTAATT+TGG + chr4_1:52334815-52334834 Msa0554700:intron 25.0%
! AAAGTGATATAAATGCTTAC+CGG - chr4_1:52334920-52334939 None:intergenic 25.0%
! TTCTTTAATTACTATGGCTA+TGG - chr4_1:52335059-52335078 None:intergenic 25.0%
!! TTTTTCTCTCACTAGTTATT+TGG - chr4_1:52335305-52335324 None:intergenic 25.0%
! GAACTGAGAAGATATAAATA+AGG - chr4_1:52335386-52335405 None:intergenic 25.0%
! TTTATTCTATACAACATGTG+AGG - chr4_1:52335520-52335539 None:intergenic 25.0%
!!! TGATTTTAAAGTTCACTTGT+TGG + chr4_1:52335588-52335607 Msa0554700:intron 25.0%
!! TTGAATATTTTCTTGATTGC+AGG + chr4_1:52335668-52335687 Msa0554700:intron 25.0%
!! TGAATATTTTCTTGATTGCA+GGG + chr4_1:52335669-52335688 Msa0554700:intron 25.0%
!!! AAGTTGATTTGTTCAAGATT+TGG - chr4_1:52335705-52335724 None:intergenic 25.0%
! AAATCAACTTCAGATATCTT+GGG + chr4_1:52335715-52335734 Msa0554700:CDS 25.0%
!!! CACATTCTAGAGTAAAATTT+TGG - chr4_1:52335757-52335776 None:intergenic 25.0%
!! TTTTCAACTTTTGTACACAA+AGG - chr4_1:52335874-52335893 None:intergenic 25.0%
GCTTTCCTATTTATTTGGTA+TGG - chr4_1:52332422-52332441 None:intergenic 30.0%
! TTTTTGTGGTTCACATTCTT+TGG + chr4_1:52332493-52332512 Msa0554700:five_prime_UTR 30.0%
AATTCAATGATAGCAGAATC+TGG - chr4_1:52332756-52332775 None:intergenic 30.0%
!! ATGGTAGAAGCTTATTTTCA+GGG + chr4_1:52332821-52332840 Msa0554700:CDS 30.0%
! GAAGAGAAACAGAGAAATTT+TGG - chr4_1:52332852-52332871 None:intergenic 30.0%
AAAAGAACAAAGCCAGTAAA+GGG - chr4_1:52332885-52332904 None:intergenic 30.0%
AAAAAGAACAAAGCCAGTAA+AGG - chr4_1:52332886-52332905 None:intergenic 30.0%
ATACTTTCAATTCTTGTCAC+AGG - chr4_1:52333004-52333023 None:intergenic 30.0%
! GTATGACATTGTTTAAAACG+GGG + chr4_1:52333020-52333039 Msa0554700:intron 30.0%
!!! TACCATGTTTTTTACACAAG+TGG + chr4_1:52333324-52333343 Msa0554700:intron 30.0%
ATAGTTAGTTCAAGCACTAA+GGG - chr4_1:52333419-52333438 None:intergenic 30.0%
TATAGTTAGTTCAAGCACTA+AGG - chr4_1:52333420-52333439 None:intergenic 30.0%
CAACTGTAAAAAATTTCAGG+GGG - chr4_1:52333481-52333500 None:intergenic 30.0%
AGTGGAAGTAATCAAATCAA+TGG - chr4_1:52333607-52333626 None:intergenic 30.0%
TCAGGAATCATGAACATTTA+GGG - chr4_1:52333663-52333682 None:intergenic 30.0%
ATCAGGAATCATGAACATTT+AGG - chr4_1:52333664-52333683 None:intergenic 30.0%
! ATTCCTGATTTTCAATCACA+GGG + chr4_1:52333675-52333694 Msa0554700:intron 30.0%
ACATCAACAAACAGAAACTT+AGG - chr4_1:52333860-52333879 None:intergenic 30.0%
! GTTTGTTGATGTTTAAACAG+TGG + chr4_1:52333868-52333887 Msa0554700:intron 30.0%
!! AGAATTTTAACCGAACGATA+AGG + chr4_1:52334023-52334042 Msa0554700:intron 30.0%
!! TATTTTGCTTCCACTGATTA+AGG + chr4_1:52334159-52334178 Msa0554700:intron 30.0%
CACTAACACAGATTTACATT+AGG - chr4_1:52334254-52334273 None:intergenic 30.0%
TTAATCGACCTTGAAATACT+CGG - chr4_1:52334300-52334319 None:intergenic 30.0%
GTAAACATATCTAGCTATTG+AGG + chr4_1:52334381-52334400 Msa0554700:intron 30.0%
ATCAAAATCAGAATGGAAGA+GGG - chr4_1:52334451-52334470 None:intergenic 30.0%
AATCAAAATCAGAATGGAAG+AGG - chr4_1:52334452-52334471 None:intergenic 30.0%
GTTCACAAGTGAGTATTATT+TGG - chr4_1:52334679-52334698 None:intergenic 30.0%
!!! TTCTCTAATTTTTGGAACAG+GGG - chr4_1:52334722-52334741 None:intergenic 30.0%
!!! GTTTCTCTAATTTTTGGAAC+AGG - chr4_1:52334724-52334743 None:intergenic 30.0%
TGCAAACACAAAAACAAAGT+CGG - chr4_1:52334785-52334804 None:intergenic 30.0%
!!! TTTGTTTTTGTGTTTGCAAG+AGG + chr4_1:52334787-52334806 Msa0554700:intron 30.0%
!!! TTGTTTTTGTGTTTGCAAGA+GGG + chr4_1:52334788-52334807 Msa0554700:intron 30.0%
TTTCTCTCAAACCAATCAAA+GGG - chr4_1:52335120-52335139 None:intergenic 30.0%
ATTTCTCTCAAACCAATCAA+AGG - chr4_1:52335121-52335140 None:intergenic 30.0%
! AAGAGAGTGTAAAGAGATAA+AGG - chr4_1:52335277-52335296 None:intergenic 30.0%
TGCTAATGACTAACAAGTTA+TGG - chr4_1:52335547-52335566 None:intergenic 30.0%
TCACAGTAAATCTCATTCTA+AGG - chr4_1:52335571-52335590 None:intergenic 30.0%
CAAATCAACTTCAGATATCT+TGG + chr4_1:52335714-52335733 Msa0554700:CDS 30.0%
!! TTTTAAGTGCAGATTATCAG+TGG + chr4_1:52335778-52335797 Msa0554700:three_prime_UTR 30.0%
ACTTGACTTCATTTAAGTCA+AGG - chr4_1:52336003-52336022 None:intergenic 30.0%
TGAAATCAGCTTATCCTTAA+TGG + chr4_1:52336037-52336056 Msa0554700:three_prime_UTR 30.0%
AAGAGGTTATCTTACCATTA+AGG - chr4_1:52336054-52336073 None:intergenic 30.0%
CTGAAAATAAGCTTCTACCA+TGG - chr4_1:52332822-52332841 None:intergenic 35.0%
!! CATGGTAGAAGCTTATTTTC+AGG + chr4_1:52332820-52332839 Msa0554700:CDS 35.0%
! ATGAAGCACTAACACAAACA+CGG - chr4_1:52333151-52333170 None:intergenic 35.0%
TGTTTGTGTTAGTGCTTCAT+AGG + chr4_1:52333151-52333170 Msa0554700:intron 35.0%
AGCCACTTGTGTAAAAAACA+TGG - chr4_1:52333329-52333348 None:intergenic 35.0%
TAGTTAGTTCAAGCACTAAG+GGG - chr4_1:52333418-52333437 None:intergenic 35.0%
! ATTTCAGGGGGCATATATTA+TGG - chr4_1:52333469-52333488 None:intergenic 35.0%
!! TGCTCATTTTTGAACTTCAG+TGG + chr4_1:52333575-52333594 Msa0554700:intron 35.0%
! GATTCCTGATTTTCAATCAC+AGG + chr4_1:52333674-52333693 Msa0554700:intron 35.0%
!! TAACGTTCCATTTGTTGTGA+AGG + chr4_1:52333706-52333725 Msa0554700:CDS 35.0%
GGCATCAACAAATTTGATAG+CGG + chr4_1:52333953-52333972 Msa0554700:CDS 35.0%
! TCACCAATCTTGCACTATTT+TGG + chr4_1:52333982-52334001 Msa0554700:intron 35.0%
GTTCCAAAATAGTGCAAGAT+TGG - chr4_1:52333988-52334007 None:intergenic 35.0%
CCAAACATAACCTTATCGTT+CGG - chr4_1:52334036-52334055 None:intergenic 35.0%
CGAACGATAAGGTTATGTTT+GGG + chr4_1:52334034-52334053 Msa0554700:intron 35.0%
! ATAAGGTTATGTTTGGGACA+TGG + chr4_1:52334040-52334059 Msa0554700:intron 35.0%
! TAAGGTTATGTTTGGGACAT+GGG + chr4_1:52334041-52334060 Msa0554700:intron 35.0%
! TTTGGGACATGGGTTTATAA+GGG + chr4_1:52334051-52334070 Msa0554700:intron 35.0%
GAAACTAAAAGAGAAGGGTA+TGG - chr4_1:52334212-52334231 None:intergenic 35.0%
TGGAGGAAACTAAAAGAGAA+GGG - chr4_1:52334217-52334236 None:intergenic 35.0%
TTGGAGGAAACTAAAAGAGA+AGG - chr4_1:52334218-52334237 None:intergenic 35.0%
! ATTAGGATTTCTTTGGGAGT+TGG - chr4_1:52334237-52334256 None:intergenic 35.0%
! TCTCAAAGAGTTTTCTCAGT+TGG - chr4_1:52334330-52334349 None:intergenic 35.0%
GATAACTGGCAATTTGTCAA+TGG - chr4_1:52334500-52334519 None:intergenic 35.0%
CTTGAATAAGAGATAGCGAT+AGG - chr4_1:52334892-52334911 None:intergenic 35.0%
GTGATTTCATTATTGAAGCG+AGG + chr4_1:52334994-52335013 Msa0554700:intron 35.0%
GGATCAATCAAGTGAGAAAT+AGG - chr4_1:52335088-52335107 None:intergenic 35.0%
AGTACCAAACTTCTTCTCAT+TGG + chr4_1:52335174-52335193 Msa0554700:intron 35.0%
! CTCACACTCTTTTCAACATT+TGG + chr4_1:52335405-52335424 Msa0554700:intron 35.0%
! ACACTCTTTTCAACATTTGG+AGG + chr4_1:52335408-52335427 Msa0554700:intron 35.0%
TATACAACATGTGAGGCAAA+TGG - chr4_1:52335513-52335532 None:intergenic 35.0%
CTTGCACTGTAATTTGACAT+AGG - chr4_1:52335817-52335836 None:intergenic 35.0%
TGTACACAAAGGTAACACAA+TGG - chr4_1:52335863-52335882 None:intergenic 35.0%
TCATTTAAGTCAAGGTTCAG+AGG - chr4_1:52335995-52336014 None:intergenic 35.0%
! TTCTCTGTTTCTCTTCTTCC+AGG + chr4_1:52332856-52332875 Msa0554700:CDS 40.0%
! CGTCAGATTGAAAGTGTGTT+CGG + chr4_1:52333057-52333076 Msa0554700:intron 40.0%
! TATGTGGGAGCTTTATGCAT+GGG - chr4_1:52333267-52333286 None:intergenic 40.0%
ATAAAGCTCCCACATACACA+GGG + chr4_1:52333271-52333290 Msa0554700:intron 40.0%
TGTGCTATACACCAAATGGT+GGG - chr4_1:52333298-52333317 None:intergenic 40.0%
GTTGTGTGCTATACACCAAA+TGG - chr4_1:52333302-52333321 None:intergenic 40.0%
AGTTAGTTCAAGCACTAAGG+GGG - chr4_1:52333417-52333436 None:intergenic 40.0%
TGATGAGCAATGCACTAGTT+TGG + chr4_1:52333499-52333518 Msa0554700:intron 40.0%
TAAGACACATCAGCAGAAAG+TGG - chr4_1:52333625-52333644 None:intergenic 40.0%
TCTCCCTGTGATTGAAAATC+AGG - chr4_1:52333681-52333700 None:intergenic 40.0%
! GATTTTCAATCACAGGGAGA+CGG + chr4_1:52333681-52333700 Msa0554700:intron 40.0%
TAAACAGTGGGATAAACCTG+AGG + chr4_1:52333881-52333900 Msa0554700:intron 40.0%
CCGAACGATAAGGTTATGTT+TGG + chr4_1:52334033-52334052 Msa0554700:intron 40.0%
! GTTTGGGACATGGGTTTATA+AGG + chr4_1:52334050-52334069 Msa0554700:intron 40.0%
TTGGGACATGGGTTTATAAG+GGG + chr4_1:52334052-52334071 Msa0554700:intron 40.0%
ACATGGGTTTATAAGGGGAA+GGG + chr4_1:52334057-52334076 Msa0554700:intron 40.0%
TATCCAGGATCCTTAATCAG+TGG - chr4_1:52334172-52334191 None:intergenic 40.0%
! AAAGAGAAGGGTATGGACTA+TGG - chr4_1:52334205-52334224 None:intergenic 40.0%
ATCTGTGTTAGTGACATTCC+CGG + chr4_1:52334261-52334280 Msa0554700:intron 40.0%
! GCTTTGAACCGAGTATTTCA+AGG + chr4_1:52334289-52334308 Msa0554700:intron 40.0%
! AACTCTTTGAGAACCGACAT+TGG + chr4_1:52334338-52334357 Msa0554700:intron 40.0%
TCCAACGAAATTGGGATAAC+TGG - chr4_1:52334514-52334533 None:intergenic 40.0%
CGATCAGTTCCAACGAAATT+GGG - chr4_1:52334522-52334541 None:intergenic 40.0%
CCAATTTCGTTGGAACTGAT+CGG + chr4_1:52334520-52334539 Msa0554700:CDS 40.0%
! GATCGGAATACTTTTCTCAG+TGG + chr4_1:52334537-52334556 Msa0554700:CDS 40.0%
AGAGGGACTTGATGAATTGA+TGG + chr4_1:52334805-52334824 Msa0554700:intron 40.0%
ATCTCTTATTCAAGCCTGAC+CGG + chr4_1:52334898-52334917 Msa0554700:CDS 40.0%
GATATAAATGCTTACCGGTC+AGG - chr4_1:52334915-52334934 None:intergenic 40.0%
GTAGCTAACATCAGACAAAC+TGG - chr4_1:52334951-52334970 None:intergenic 40.0%
CCAATCAAAGGGTCATTAAC+AGG - chr4_1:52335109-52335128 None:intergenic 40.0%
CCTGTTAATGACCCTTTGAT+TGG + chr4_1:52335106-52335125 Msa0554700:intron 40.0%
GCAACCAATGAGAAGAAGTT+TGG - chr4_1:52335181-52335200 None:intergenic 40.0%
!! CTGGTTTGGAATCGATTATG+AGG - chr4_1:52335434-52335453 None:intergenic 40.0%
ACTGTTTCCAAACCAACCTA+GGG - chr4_1:52335464-52335483 None:intergenic 40.0%
AACTGTTTCCAAACCAACCT+AGG - chr4_1:52335465-52335484 None:intergenic 40.0%
! TGGTTTGGAAACAGTTGCAT+TGG + chr4_1:52335469-52335488 Msa0554700:intron 40.0%
!! ATTTTGGCAGCACATCTTAC+TGG - chr4_1:52335741-52335760 None:intergenic 40.0%
ACTGCTGGAAATGATGAGTG+AGG - chr4_1:52332546-52332565 None:intergenic 45.0%
AGTAGAGTAGAGCAACCCAA+AGG + chr4_1:52332563-52332582 Msa0554700:five_prime_UTR 45.0%
TGGTGGCAAGCTTGCAATAA+TGG - chr4_1:52332788-52332807 None:intergenic 45.0%
CTTCTACCATGGAGCAACAA+TGG - chr4_1:52332811-52332830 None:intergenic 45.0%
TCTTCCAGGTAACCCTTTAC+TGG + chr4_1:52332870-52332889 Msa0554700:intron 45.0%
AAAGCCAGTAAAGGGTTACC+TGG - chr4_1:52332877-52332896 None:intergenic 45.0%
GGTGTCAAAAGCTACACATG+CGG + chr4_1:52333078-52333097 Msa0554700:intron 45.0%
GACACAAGCTTGCATGTGTA+AGG - chr4_1:52333201-52333220 None:intergenic 45.0%
! ATGTGGGAGCTTTATGCATG+GGG - chr4_1:52333266-52333285 None:intergenic 45.0%
! GTATGTGGGAGCTTTATGCA+TGG - chr4_1:52333268-52333287 None:intergenic 45.0%
CATAAAGCTCCCACATACAC+AGG + chr4_1:52333270-52333289 Msa0554700:intron 45.0%
GTGTGCTATACACCAAATGG+TGG - chr4_1:52333299-52333318 None:intergenic 45.0%
AACAGTCACGAGTTCAAGTC+TGG - chr4_1:52333356-52333375 None:intergenic 45.0%
CCAGAAGCCTTCACAACAAA+TGG - chr4_1:52333716-52333735 None:intergenic 45.0%
!! CCATTTGTTGTGAAGGCTTC+TGG + chr4_1:52333713-52333732 Msa0554700:CDS 45.0%
AAAGACGAAAACGATGGGAG+TGG - chr4_1:52333813-52333832 None:intergenic 45.0%
CCAAACCAAATAGTCCCAAC+CGG - chr4_1:52333908-52333927 None:intergenic 45.0%
! CGGTTGGGACTATTTGGTTT+GGG + chr4_1:52333906-52333925 Msa0554700:CDS 45.0%
TTGCAGCTGTAGTAGCACTT+TGG + chr4_1:52333931-52333950 Msa0554700:CDS 45.0%
TGCAGCTGTAGTAGCACTTT+GGG + chr4_1:52333932-52333951 Msa0554700:CDS 45.0%
GACATGGGTTTATAAGGGGA+AGG + chr4_1:52334056-52334075 Msa0554700:intron 45.0%
! CTTCCACTGATTAAGGATCC+TGG + chr4_1:52334166-52334185 Msa0554700:intron 45.0%
TATGGAGTAGTGGTGTATCC+AGG - chr4_1:52334187-52334206 None:intergenic 45.0%
! AGGATTTCTTTGGGAGTTGG+AGG - chr4_1:52334234-52334253 None:intergenic 45.0%
GCCAGTTATCCCAATTTCGT+TGG + chr4_1:52334510-52334529 Msa0554700:CDS 45.0%
CCGATCAGTTCCAACGAAAT+TGG - chr4_1:52334523-52334542 None:intergenic 45.0%
! CTTCTCATTGGTTGCAAGAG+AGG + chr4_1:52335186-52335205 Msa0554700:intron 45.0%
!! AAGATTCCCCTAGGTTGGTT+TGG + chr4_1:52335454-52335473 Msa0554700:intron 45.0%
CTGTTTCCAAACCAACCTAG+GGG - chr4_1:52335463-52335482 None:intergenic 45.0%
!!! AATAATCTAAAATTAAATTA+AGG - chr4_1:52332606-52332625 None:intergenic 5.0%
CTACCATGGAGCAACAATGG+TGG - chr4_1:52332808-52332827 None:intergenic 50.0%
ATACACAGGGTCCCACCATT+TGG + chr4_1:52333284-52333303 Msa0554700:intron 50.0%
ACGAAAACGATGGGAGTGGT+AGG - chr4_1:52333809-52333828 None:intergenic 50.0%
AGTGGGATAAACCTGAGGAC+CGG + chr4_1:52333886-52333905 Msa0554700:intron 50.0%
GATAAACCTGAGGACCGGTT+GGG + chr4_1:52333891-52333910 Msa0554700:CDS 50.0%
CCGGTTGGGACTATTTGGTT+TGG + chr4_1:52333905-52333924 Msa0554700:CDS 50.0%
AAGGGGAAGGGAAGAGCTTA+TGG + chr4_1:52334069-52334088 Msa0554700:intron 50.0%
! GGGTATGGACTATGGAGTAG+TGG - chr4_1:52334197-52334216 None:intergenic 50.0%
ACTCGGTTCAAAGCTAGCAC+CGG - chr4_1:52334283-52334302 None:intergenic 50.0%
! CCTAGGGGAATCTTCTGGTT+TGG - chr4_1:52335448-52335467 None:intergenic 50.0%
CCAAACCAGAAGATTCCCCT+AGG + chr4_1:52335445-52335464 Msa0554700:intron 50.0%
ACCAGAAGATTCCCCTAGGT+TGG + chr4_1:52335449-52335468 Msa0554700:intron 50.0%
ACCAACCTAGGGGAATCTTC+TGG - chr4_1:52335453-52335472 None:intergenic 50.0%
GGGTTGCTCTACTCTACTGC+TGG - chr4_1:52332561-52332580 None:intergenic 55.0%
CCATGGAGCAACAATGGTGG+TGG - chr4_1:52332805-52332824 None:intergenic 55.0%
CCACCACCATTGTTGCTCCA+TGG + chr4_1:52332802-52332821 Msa0554700:CDS 55.0%
TATGCATGGGGCTGTGTGCA+CGG - chr4_1:52333254-52333273 None:intergenic 55.0%
TGGTGGGACCCTGTGTATGT+GGG - chr4_1:52333282-52333301 None:intergenic 55.0%
! ATGGTGGGACCCTGTGTATG+TGG - chr4_1:52333283-52333302 None:intergenic 55.0%
GGATAAACCTGAGGACCGGT+TGG + chr4_1:52333890-52333909 Msa0554700:CDS 55.0%
AATAGTCCCAACCGGTCCTC+AGG - chr4_1:52333900-52333919 None:intergenic 55.0%
GAGGACCGGTTGGGACTATT+TGG + chr4_1:52333900-52333919 Msa0554700:CDS 55.0%
CTCGGTTCAAAGCTAGCACC+GGG - chr4_1:52334282-52334301 None:intergenic 55.0%
ATGCATGGGGCTGTGTGCAC+GGG - chr4_1:52333253-52333272 None:intergenic 60.0%
ACAACTTTACCGCCGCGCCA+AGG + chr4_1:52333389-52333408 Msa0554700:intron 60.0%
CAAGCACTAAGGGGGAGCCT+TGG - chr4_1:52333409-52333428 None:intergenic 60.0%
TGCATGGGGCTGTGTGCACG+GGG - chr4_1:52333252-52333271 None:intergenic 65.0%
ACTAAGGGGGAGCCTTGGCG+CGG - chr4_1:52333404-52333423 None:intergenic 65.0%
AAGGGGGAGCCTTGGCGCGG+CGG - chr4_1:52333401-52333420 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52332419 52336079 52332419 ID=Msa0554700;Name=Msa0554700
chr4_1 mRNA 52332419 52336079 52332419 ID=Msa0554700-mRNA-1;Parent=Msa0554700;Name=Msa0554700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=187|1|1|1|0.83|0.71|7|335|145
chr4_1 exon 52332419 52332584 52332419 ID=Msa0554700-mRNA-1:exon:15053;Parent=Msa0554700-mRNA-1
chr4_1 exon 52332757 52332877 52332757 ID=Msa0554700-mRNA-1:exon:15054;Parent=Msa0554700-mRNA-1
chr4_1 exon 52333696 52333790 52333696 ID=Msa0554700-mRNA-1:exon:15055;Parent=Msa0554700-mRNA-1
chr4_1 exon 52333888 52333974 52333888 ID=Msa0554700-mRNA-1:exon:15056;Parent=Msa0554700-mRNA-1
chr4_1 exon 52334496 52334558 52334496 ID=Msa0554700-mRNA-1:exon:15057;Parent=Msa0554700-mRNA-1
chr4_1 exon 52334882 52334919 52334882 ID=Msa0554700-mRNA-1:exon:15058;Parent=Msa0554700-mRNA-1
chr4_1 exon 52335690 52336079 52335690 ID=Msa0554700-mRNA-1:exon:15059;Parent=Msa0554700-mRNA-1
chr4_1 five_prime_UTR 52332419 52332584 52332419 ID=Msa0554700-mRNA-1:five_prime_utr;Parent=Msa0554700-mRNA-1
chr4_1 five_prime_UTR 52332757 52332777 52332757 ID=Msa0554700-mRNA-1:five_prime_utr;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52332778 52332877 52332778 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52333696 52333790 52333696 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52333888 52333974 52333888 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52334496 52334558 52334496 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52334882 52334919 52334882 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 CDS 52335690 52335744 52335690 ID=Msa0554700-mRNA-1:cds;Parent=Msa0554700-mRNA-1
chr4_1 three_prime_UTR 52335745 52336079 52335745 ID=Msa0554700-mRNA-1:three_prime_utr;Parent=Msa0554700-mRNA-1
Gene Sequence

>Msa0554700

ATGGCTTCCATTATTGCAAGCTTGCCACCACCATTGTTGCTCCATGGTAGAAGCTTATTTTCAGGGAACTTCCAAAATTTCTCTGTTTCTCTTCTTCCAGGGAGACGGAGTAACGTTCCATTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTTCACTTACTGTTTTCAAGTCTGTTCAGAATGTTTGGGATAAACCTGAGGACCGGTTGGGACTATTTGGTTTGGGCTTTGCAGCTGTAGTAGCACTTTGGGCATCAACAAATTTGATAGCGGCCATTGACAAATTGCCAGTTATCCCAATTTCGTTGGAACTGATCGGAATACTTTTCTCAGTGTGGTTCACCTATCGCTATCTCTTATTCAAGCCTGACCGGGAAGAACTTTTCCAAATCTTGAACAAATCAACTTCAGATATCTTGGGCCAGTAA

Protein sequence

>Msa0554700

MASIIASLPPPLLLHGRSLFSGNFQNFSVSLLPGRRSNVPFVVKASGESSESSTSLTVFKSVQNVWDKPEDRLGLFGLGFAAVVALWASTNLIAAIDKLPVIPISLELIGILFSVWFTYRYLLFKPDREELFQILNKSTSDILGQ*