AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003340 MtrunA17_Chr1g0155621 92.143 560 27 4 1 558 1 545 0.0 948
Msa0003340 MtrunA17_Chr5g0442071 38.462 299 148 7 190 455 107 402 2.21e-45 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003340 AT5G57960.1 83.221 447 69 1 107 553 90 530 0.0 756
Msa0003340 AT5G57960.2 85.867 375 53 0 180 554 3 377 0.0 684
Msa0003340 AT3G49725.1 35.535 318 166 8 174 455 157 471 1.53e-41 159

Find 117 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGTTACCATTTGAAAA+TGG 0.177139 1_1:+5867328 Msa0003340:CDS
AGCTGATACTGCTGGATTAT+TGG 0.256175 1_1:+5862546 Msa0003340:CDS
AGAAGATTCTTTGAGTGAAT+TGG 0.301356 1_1:+5862516 Msa0003340:CDS
CAATTCCAAAGTTGATGGTT+TGG 0.311895 1_1:+5865930 Msa0003340:CDS
GATATCAGAGTCATCACTTT+TGG 0.326042 1_1:+5865701 Msa0003340:CDS
CTTTGTTACCATTTGAAAAT+GGG 0.348300 1_1:+5867329 Msa0003340:CDS
ATAATGACTTGCAGCATAAC+AGG 0.366769 1_1:+5867747 Msa0003340:three_prime_UTR
ACCGAAAGCAGTACCGTAAT+CGG 0.366937 1_1:+5864857 Msa0003340:CDS
GCCGATTACGGTACTGCTTT+CGG 0.367836 1_1:-5864858 None:intergenic
CATTTATCTGTTGCTCGGCC+AGG 0.375286 1_1:-5865871 None:intergenic
TAAAACCAACAGTGTCTGTT+AGG 0.378664 1_1:-5865500 None:intergenic
ATCATCAATTCCAAAGTTGA+TGG 0.378860 1_1:+5865925 Msa0003340:CDS
AACACATGAAGCATCTTTAC+AGG 0.379979 1_1:+5864162 Msa0003340:CDS
TGGTGCATGTGATTGATATC+AGG 0.385889 1_1:+5865721 Msa0003340:CDS
CTAGGTTGCATTAGCACAAA+TGG 0.387279 1_1:+5864460 Msa0003340:intron
CCAATGTACGTCCTAGGGTT+TGG 0.404578 1_1:-5863557 None:intergenic
ATTTATCTGTTGCTCGGCCA+GGG 0.407400 1_1:-5865870 None:intergenic
TTGTATGCCATCGCCACTTA+AGG 0.410809 1_1:-5867150 None:intergenic
TTACATGTTTAAGAAAGTTA+AGG 0.413739 1_1:-5867610 None:intergenic
GATTGTTCTTGTTCTTGAAT+TGG 0.418768 1_1:-5861661 None:intergenic
GGTGAAGTTAGTGATTCATT+TGG 0.426485 1_1:+5862490 Msa0003340:CDS
AACCATTCCAACTTGGTGTA+TGG 0.431181 1_1:-5867365 None:intergenic
ATGAAATGCGCATGCGTTAA+CGG 0.432671 1_1:+5861409 Msa0003340:CDS
GTTAAGAGAGAAAGAGGATA+AGG 0.435361 1_1:-5861566 None:intergenic
ACCTGTGCCTGTGGTATCCT+TGG 0.436714 1_1:+5864891 Msa0003340:CDS
AGTAGTGGCTTTATCTTCAT+CGG 0.441482 1_1:-5861698 None:intergenic
CCAGAGCCAATGTACGTCCT+AGG 0.441800 1_1:-5863563 None:intergenic
GTAGTGGCTTTATCTTCATC+GGG 0.443213 1_1:-5861697 None:intergenic
GGAGGACAGGTGAAGGGAAT+GGG 0.443918 1_1:+5864536 Msa0003340:CDS
ATCTTTCTTACTAGTGTAGT+AGG 0.445633 1_1:-5865534 None:intergenic
GTACTGAGAGACGCCGATTA+CGG 0.446417 1_1:-5864870 None:intergenic
TAAGAGTGCAATTAATGCAT+TGG 0.446596 1_1:+5863601 Msa0003340:CDS
TTCTTGAATTGGAAGTAAAA+CGG 0.448597 1_1:-5861650 None:intergenic
GGTACACACAGTTGTCTCAT+AGG 0.449520 1_1:-5867583 None:intergenic
GCTTTATCTTCATCGGGAGT+TGG 0.450309 1_1:-5861691 None:intergenic
TGGAAGTAAAACGGCGTCGT+TGG 0.454503 1_1:-5861641 None:intergenic
TAGGTTGGTTATACGAATGC+TGG 0.454748 1_1:+5865014 Msa0003340:intron
CACAGCATTTATCTGTTGCT+CGG 0.455772 1_1:-5865876 None:intergenic
GGACAAAGTTCTGTCAGAAC+TGG 0.464434 1_1:+5865898 Msa0003340:CDS
ACTCATCTTGAGCGTCAATC+AGG 0.469943 1_1:+5864515 Msa0003340:CDS
TTGTTCCAAACCATCAACTT+TGG 0.473073 1_1:-5865935 None:intergenic
TTTGATGATGAGCTATCAGC+TGG 0.475329 1_1:+5863641 Msa0003340:CDS
TTTAACAGGACTCCATGGTA+TGG 0.475571 1_1:+5867299 Msa0003340:intron
AGGAGGACAGGTGAAGGGAA+TGG 0.488898 1_1:+5864535 Msa0003340:CDS
CTCCTCCAGTGTGGCTCTGA+AGG 0.489626 1_1:-5865679 None:intergenic
ACCTGTACTCTCCTTGTAGT+TGG 0.491218 1_1:-5865110 None:intergenic
TTATCTTCATCGGGAGTTGG+AGG 0.492319 1_1:-5861688 None:intergenic
CAGAAAATCAGTCTAGAAGC+TGG 0.494920 1_1:+5867098 Msa0003340:CDS
TCCTAGGCAACTGCGCAACC+TGG 0.497117 1_1:+5864063 Msa0003340:intron
GCAACTGCGCAACCTGGAAA+AGG 0.498140 1_1:+5864069 Msa0003340:CDS
TTTCTTATGGCAGATTGATA+GGG 0.500022 1_1:+5867064 Msa0003340:intron
CTCGCTGATTAAATATATCA+AGG 0.502133 1_1:-5864135 None:intergenic
AACAAACCTCTCTTCCGTTA+CGG 0.507246 1_1:-5861792 None:intergenic
TGCGCATGCGTTAACGGTGG+TGG 0.508686 1_1:+5861415 Msa0003340:CDS
AAAGTTGATGGTTTGGAACA+AGG 0.512730 1_1:+5865937 Msa0003340:CDS
TTCCGTTACGGAGCTTGAAG+CGG 0.515448 1_1:-5861780 None:intergenic
GAGCAGTTAGCTGATACTGC+TGG 0.517824 1_1:+5862538 Msa0003340:CDS
TCAATCAGGAGGACAGGTGA+AGG 0.530450 1_1:+5864529 Msa0003340:CDS
CAACTTTAGATCCAACTACA+AGG 0.530983 1_1:+5865099 Msa0003340:CDS
TTAACAGGACTCCATGGTAT+GGG 0.535370 1_1:+5867300 Msa0003340:intron
TATTCTTTAACAGGACTCCA+TGG 0.536002 1_1:+5867294 Msa0003340:intron
TGTAACGTTAAGAGAGAAAG+AGG 0.539755 1_1:-5861572 None:intergenic
CCTAGGACGTACATTGGCTC+TGG 0.544137 1_1:+5863563 Msa0003340:CDS
AGTTGCAAATAGTTTATCCT+CGG 0.544687 1_1:-5865081 None:intergenic
TGAGCGTCAATCAGGAGGAC+AGG 0.551278 1_1:+5864523 Msa0003340:CDS
TGCGGCCTTCAGAGCCACAC+TGG 0.551739 1_1:+5865674 Msa0003340:CDS
GACCGTGTTGAAAGCGTTGA+AGG 0.552083 1_1:+5867843 Msa0003340:three_prime_UTR
CGAGCAAGGGACATATATCA+AGG 0.553171 1_1:+5867525 Msa0003340:CDS
AACCGCTTCAAGCTCCGTAA+CGG 0.554129 1_1:+5861778 Msa0003340:CDS
ATTATAATTGTATATCTCGC+AGG 0.557636 1_1:-5867729 None:intergenic
TTTGTTACCATTTGAAAATG+GGG 0.559718 1_1:+5867330 Msa0003340:CDS
CACCATACACCAAGTTGGAA+TGG 0.561527 1_1:+5867363 Msa0003340:CDS
CAGAGCCAATGTACGTCCTA+GGG 0.562024 1_1:-5863562 None:intergenic
CTGGTTGGTGTTGAGAGAAA+AGG 0.565144 1_1:+5862469 Msa0003340:CDS
ATATAGGAATATACCGAGCA+AGG 0.568191 1_1:+5867511 Msa0003340:intron
ACCAAGGATACCACAGGCAC+AGG 0.571154 1_1:-5864892 None:intergenic
CTTGGTGTATGGTGCTGAGA+AGG 0.572248 1_1:-5867354 None:intergenic
TGCAGTTCAAGACAAACTAA+AGG 0.573803 1_1:+5867184 Msa0003340:CDS
CTCAGCACCATACACCAAGT+TGG 0.574248 1_1:+5867358 Msa0003340:CDS
TTTATCTGTTGCTCGGCCAG+GGG 0.576253 1_1:-5865869 None:intergenic
TCCAACTACAAGGAGAGTAC+AGG 0.576741 1_1:+5865109 Msa0003340:CDS
GAAGAGAAAGCGTATCTGGT+TGG 0.578497 1_1:+5862454 Msa0003340:CDS
GTTTAAGAAAGTTAAGGTCG+TGG 0.579779 1_1:-5867604 None:intergenic
TATCCAGATGAAGAATGGAA+AGG 0.582866 1_1:+5865470 Msa0003340:intron
AAGCAACCTCGCATAACGTA+GGG 0.583825 1_1:-5867557 None:intergenic
GTATGCATATCTGCCTTAAG+TGG 0.586670 1_1:+5867137 Msa0003340:CDS
CTTGATATATGTCCCTTGCT+CGG 0.592539 1_1:-5867524 None:intergenic
ATATCTGCCTTAAGTGGCGA+TGG 0.598505 1_1:+5867143 Msa0003340:CDS
CCAAACCCTAGGACGTACAT+TGG 0.607208 1_1:+5863557 Msa0003340:CDS
ATCCTTCAACGCTTTCAACA+CGG 0.608980 1_1:-5867845 None:intergenic
CAAGCTCCGTAACGGAAGAG+AGG 0.609194 1_1:+5861786 Msa0003340:CDS
TATAGGAATATACCGAGCAA+GGG 0.610221 1_1:+5867512 Msa0003340:intron
TTTCTCCTAACAGACACTGT+TGG 0.614231 1_1:+5865495 Msa0003340:CDS
GGTATACTTCTGGTAAGTAG+AGG 0.616128 1_1:-5862575 None:intergenic
TGTTGTTACTGTTATCGTCG+TGG 0.617453 1_1:-5861750 None:intergenic
TTATCTGTTGCTCGGCCAGG+GGG 0.617915 1_1:-5865868 None:intergenic
ACAGGACTCCATGGTATGGG+TGG 0.618988 1_1:+5867303 Msa0003340:intron
CAATCAGGAGGACAGGTGAA+GGG 0.620912 1_1:+5864530 Msa0003340:CDS
CAAAGCTTCCACCCATACCA+TGG 0.623436 1_1:-5867311 None:intergenic
GGCTTGCTTCTCCAAACCCT+AGG 0.630711 1_1:+5863546 Msa0003340:intron
CTCTGATATCTCCTCCAGTG+TGG 0.631450 1_1:-5865688 None:intergenic
AAACTAACCAAGGATACCAC+AGG 0.635397 1_1:-5864898 None:intergenic
ATAATTGTATATCTCGCAGG+TGG 0.639130 1_1:-5867726 None:intergenic
GGCCTTCAGAGCCACACTGG+AGG 0.640849 1_1:+5865677 Msa0003340:CDS
TGGAGCAGATGTTCTTGCCG+AGG 0.641917 1_1:+5865064 Msa0003340:CDS
TGAAGTTCTTCAGTGTTGTG+CGG 0.644930 1_1:-5861595 None:intergenic
TTTCATACATATCTGTCACT+AGG 0.649260 1_1:+5867656 Msa0003340:three_prime_UTR
TGATATATTTAATCAGCGAG+CGG 0.651334 1_1:+5864138 Msa0003340:CDS
ATGTGCCCCTACGTTATGCG+AGG 0.653987 1_1:+5867551 Msa0003340:CDS
TCTCTCAGTACCTGTGCCTG+TGG 0.654803 1_1:+5864882 Msa0003340:CDS
CATCTTGAGCGTCAATCAGG+AGG 0.655959 1_1:+5864518 Msa0003340:CDS
TAAGCAACCTCGCATAACGT+AGG 0.671988 1_1:-5867558 None:intergenic
CATACATATCTGTCACTAGG+TGG 0.676654 1_1:+5867659 Msa0003340:three_prime_UTR
CGAGCAACAGATAAATGCTG+TGG 0.680751 1_1:+5865877 Msa0003340:CDS
TTGATGATGAGCTATCAGCT+GGG 0.694886 1_1:+5863642 Msa0003340:CDS
AGCAACCTCGCATAACGTAG+GGG 0.737063 1_1:-5867556 None:intergenic
AAATGCGCATGCGTTAACGG+TGG 0.787822 1_1:+5861412 Msa0003340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACACAAAATATATAATT+CGG - chr1_1:5864368-5864387 None:intergenic 10.0%
!!! TTATTTTTTGACATTATTTA+CGG + chr1_1:5865609-5865628 Msa0003340:intron 10.0%
!!! AAATTGTAATAGTTTTGATT+TGG + chr1_1:5862418-5862437 Msa0003340:intron 15.0%
!! TAACTTATATGAAAACAATT+TGG - chr1_1:5862835-5862854 None:intergenic 15.0%
!! CTTCAATTAATAATTATCAT+CGG - chr1_1:5863335-5863354 None:intergenic 15.0%
!! GATGATAATTATTAATTGAA+GGG + chr1_1:5863334-5863353 Msa0003340:intron 15.0%
!! CAGGTAATTATAAATTAAAA+AGG + chr1_1:5864181-5864200 Msa0003340:intron 15.0%
!! GTAATTATAAATTAAAAAGG+AGG + chr1_1:5864184-5864203 Msa0003340:intron 15.0%
!! ATATAAACATAAAATACCAT+AGG - chr1_1:5864244-5864263 None:intergenic 15.0%
!! TAACACAAAATATATAATTC+GGG - chr1_1:5864367-5864386 None:intergenic 15.0%
!! TTATAAGAAAAAAAGTTCTA+GGG - chr1_1:5864772-5864791 None:intergenic 15.0%
!! TTTATAAGAAAAAAAGTTCT+AGG - chr1_1:5864773-5864792 None:intergenic 15.0%
!! ATAAAAATGTAATATTATCC+AGG - chr1_1:5865149-5865168 None:intergenic 15.0%
!!! TAAATGATGATATAGAATTT+TGG - chr1_1:5865286-5865305 None:intergenic 15.0%
!! TGTTATGAATAGAATTAATT+CGG - chr1_1:5866127-5866146 None:intergenic 15.0%
!! AAAATATAAGAGAAACTATT+TGG + chr1_1:5866852-5866871 Msa0003340:intron 15.0%
!! AAATATAAGAGAAACTATTT+GGG + chr1_1:5866853-5866872 Msa0003340:intron 15.0%
!! AAATTCTATTATTCTTTAAC+AGG + chr1_1:5867285-5867304 Msa0003340:intron 15.0%
!! AAACATCTAATAGATTGAAA+TGG - chr1_1:5861854-5861873 None:intergenic 20.0%
!! AGTTACAACAATAATTAGTT+AGG + chr1_1:5861906-5861925 Msa0003340:intron 20.0%
!!! TAATTGTTGTTTACATGAAA+CGG - chr1_1:5862343-5862362 None:intergenic 20.0%
!!! TTTCAAGTTTTCACATAAAT+TGG + chr1_1:5862709-5862728 Msa0003340:intron 20.0%
!! ACTTATGATATAGCATTTAA+TGG - chr1_1:5862755-5862774 None:intergenic 20.0%
!! ATAAAAATGGAAATATGGTT+GGG - chr1_1:5863207-5863226 None:intergenic 20.0%
!! AATAAAAATGGAAATATGGT+TGG - chr1_1:5863208-5863227 None:intergenic 20.0%
!! TCACAATAAAAATGGAAATA+TGG - chr1_1:5863212-5863231 None:intergenic 20.0%
!! CGATGATAATTATTAATTGA+AGG + chr1_1:5863333-5863352 Msa0003340:intron 20.0%
!!! TGAGGATTTGTTTAAAAATT+TGG + chr1_1:5863784-5863803 Msa0003340:intron 20.0%
!!! ACTTTTAATTTTCAGTAAGA+AGG + chr1_1:5863837-5863856 Msa0003340:intron 20.0%
!! AACACAAAATATATAATTCG+GGG - chr1_1:5864366-5864385 None:intergenic 20.0%
!! TCTTATAAACATATAATGCA+TGG + chr1_1:5864784-5864803 Msa0003340:intron 20.0%
!! CTTATAAACATATAATGCAT+GGG + chr1_1:5864785-5864804 Msa0003340:intron 20.0%
!!! TCATTTTATTTATCGAGAAA+AGG + chr1_1:5865770-5865789 Msa0003340:intron 20.0%
!! GAATTCATTATAAAACTTGA+AGG - chr1_1:5866015-5866034 None:intergenic 20.0%
!! GATATTTCTCAACAAAAAAA+AGG - chr1_1:5866086-5866105 None:intergenic 20.0%
!! AGATCTTCATTATTGTTTAT+TGG + chr1_1:5866481-5866500 Msa0003340:intron 20.0%
!! GATCTTCATTATTGTTTATT+GGG + chr1_1:5866482-5866501 Msa0003340:intron 20.0%
!!! GAATTGAATTTAAAGCATTA+TGG - chr1_1:5866514-5866533 None:intergenic 20.0%
!!! GTTTCTCTTATATTTTTTCT+AGG - chr1_1:5866848-5866867 None:intergenic 20.0%
!! TATCGAAATCATATTAAAAC+AGG - chr1_1:5867223-5867242 None:intergenic 20.0%
!! ATGTAAATACTTCTAACAAA+TGG - chr1_1:5867255-5867274 None:intergenic 20.0%
!! TTACATGTTTAAGAAAGTTA+AGG - chr1_1:5867613-5867632 None:intergenic 20.0%
! TTCTTGAATTGGAAGTAAAA+CGG - chr1_1:5861653-5861672 None:intergenic 25.0%
!!! CTTTTTTTTAAGCTTAGTAG+TGG - chr1_1:5861716-5861735 None:intergenic 25.0%
!!! ATCTGCTATTTTTTAGCAAA+TGG - chr1_1:5862062-5862081 None:intergenic 25.0%
! AGCTATAAACTACTTGAATT+AGG + chr1_1:5862147-5862166 Msa0003340:intron 25.0%
!!! ATAGTTTTGATTTGGTTTGT+AGG + chr1_1:5862426-5862445 Msa0003340:intron 25.0%
! TGCAACTTCAATTTCAAATT+TGG + chr1_1:5862614-5862633 Msa0003340:intron 25.0%
! TTCCAGTAAAATAATCACTT+TGG - chr1_1:5862687-5862706 None:intergenic 25.0%
! ATTTAATGGAGTTGTTAATC+TGG - chr1_1:5862741-5862760 None:intergenic 25.0%
!! TTTAAAATCTCTTTGCATTG+TGG + chr1_1:5862928-5862947 Msa0003340:intron 25.0%
! TATGTTAATAGAACATTGCA+TGG + chr1_1:5863138-5863157 Msa0003340:intron 25.0%
!!! TTCCATTTTTATTGTGAGTT+TGG + chr1_1:5863215-5863234 Msa0003340:intron 25.0%
! AACCAAACTCACAATAAAAA+TGG - chr1_1:5863220-5863239 None:intergenic 25.0%
!! ATTTTTATTGTGAGTTTGGT+TGG + chr1_1:5863219-5863238 Msa0003340:intron 25.0%
! AGACTTAATCTAAATGTTAC+AGG + chr1_1:5863525-5863544 Msa0003340:intron 25.0%
! TCAAAGCTAGTAAACATAAA+TGG - chr1_1:5863720-5863739 None:intergenic 25.0%
!!! TAGCTTTGATTTGAGATAAT+TGG + chr1_1:5863731-5863750 Msa0003340:intron 25.0%
! AGTATAAGCAAGTGATTATT+TGG + chr1_1:5863812-5863831 Msa0003340:intron 25.0%
!!! TTTAATTTTCAGTAAGAAGG+TGG + chr1_1:5863840-5863859 Msa0003340:intron 25.0%
! TGGATCTATAAAAAACAGAA+AGG - chr1_1:5863906-5863925 None:intergenic 25.0%
! TTGACATATAAATGCAAAAG+AGG + chr1_1:5864213-5864232 Msa0003340:intron 25.0%
! GATAATAATGTATGCTTACT+TGG - chr1_1:5864601-5864620 None:intergenic 25.0%
! GCAATATCAGTCTAAAAAAA+TGG - chr1_1:5864933-5864952 None:intergenic 25.0%
! CTTACATTACCATAATACAA+AGG - chr1_1:5864955-5864974 None:intergenic 25.0%
! GCATATATCATCATCTTATA+AGG - chr1_1:5864978-5864997 None:intergenic 25.0%
!!! TGTTACAATTGATTTTGCTT+TGG + chr1_1:5865562-5865581 Msa0003340:intron 25.0%
!!! GTTACAATTGATTTTGCTTT+GGG + chr1_1:5865563-5865582 Msa0003340:intron 25.0%
! TATATATCAGTAGAAGTTCT+AGG + chr1_1:5865745-5865764 Msa0003340:intron 25.0%
!!! TATTGGAAAAATGGTTTTGT+TGG + chr1_1:5865960-5865979 Msa0003340:intron 25.0%
! AAAACCTATACCACATTATT+TGG + chr1_1:5866152-5866171 Msa0003340:intron 25.0%
! AAACCTATACCACATTATTT+GGG + chr1_1:5866153-5866172 Msa0003340:intron 25.0%
!! AATGCTTTAAATTCAATTCC+TGG + chr1_1:5866515-5866534 Msa0003340:intron 25.0%
! GTTCTATCATAAACCATATT+TGG - chr1_1:5866905-5866924 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr1_1:5866909-5866928 Msa0003340:intron 25.0%
! AATATGATTTCGATATCATG+TGG + chr1_1:5867228-5867247 Msa0003340:intron 25.0%
!!! TTAGAAGTATTTACATTTGC+TGG + chr1_1:5867259-5867278 Msa0003340:intron 25.0%
! CTTTGTTACCATTTGAAAAT+GGG + chr1_1:5867329-5867348 Msa0003340:CDS 25.0%
! TTTGTTACCATTTGAAAATG+GGG + chr1_1:5867330-5867349 Msa0003340:CDS 25.0%
!!! GTTTTCTTATTTGTTATCGT+TGG + chr1_1:5867462-5867481 Msa0003340:intron 25.0%
!! ATTTTATCGGATTCGTATAT+AGG + chr1_1:5867495-5867514 Msa0003340:intron 25.0%
! ATTATAATTGTATATCTCGC+AGG - chr1_1:5867732-5867751 None:intergenic 25.0%
GATTGTTCTTGTTCTTGAAT+TGG - chr1_1:5861664-5861683 None:intergenic 30.0%
AACTACTAACTAACTGGTTA+AGG - chr1_1:5861890-5861909 None:intergenic 30.0%
TGTTGTAACTACTAACTAAC+TGG - chr1_1:5861896-5861915 None:intergenic 30.0%
TAGTAGTTAGTTACACTAGT+AGG + chr1_1:5862015-5862034 Msa0003340:intron 30.0%
!!! TGCTATTTTTTAGCAAATGG+AGG - chr1_1:5862059-5862078 None:intergenic 30.0%
CTGATTGAATTTGTAGTGTT+TGG + chr1_1:5862115-5862134 Msa0003340:intron 30.0%
! GACTAGTTAGTTGTACTTAT+TGG + chr1_1:5862294-5862313 Msa0003340:intron 30.0%
ATCGAAACATATACTGATCA+AGG - chr1_1:5862369-5862388 None:intergenic 30.0%
AGAAGATTCTTTGAGTGAAT+TGG + chr1_1:5862516-5862535 Msa0003340:CDS 30.0%
AAGAAGAAATGGTATACTTC+TGG - chr1_1:5862588-5862607 None:intergenic 30.0%
TTGCAGAGTAAAAGAAGAAA+TGG - chr1_1:5862599-5862618 None:intergenic 30.0%
TAGTACATAGATATCGTATC+TGG + chr1_1:5862639-5862658 Msa0003340:intron 30.0%
!! CACCAAAGTGATTATTTTAC+TGG + chr1_1:5862682-5862701 Msa0003340:intron 30.0%
AGGAGAGTTTAATAACTACA+CGG - chr1_1:5863022-5863041 None:intergenic 30.0%
AACAACATCATATAGCCAAA+AGG - chr1_1:5863081-5863100 None:intergenic 30.0%
CATTGCACAATATTGTTTAC+AGG + chr1_1:5863382-5863401 Msa0003340:intron 30.0%
GAGAACAAAGACATGATTAT+TGG - chr1_1:5863418-5863437 None:intergenic 30.0%
! TAAGAGTGCAATTAATGCAT+TGG + chr1_1:5863601-5863620 Msa0003340:CDS 30.0%
! GATTTGAGATAATTGGAAGT+TGG + chr1_1:5863738-5863757 Msa0003340:intron 30.0%
TATAGTTGCATTGTTGTGTA+AGG + chr1_1:5863997-5864016 Msa0003340:intron 30.0%
! ATTTTATGCGAGATTCAGAA+TGG - chr1_1:5864027-5864046 None:intergenic 30.0%
! CTCGCTGATTAAATATATCA+AGG - chr1_1:5864138-5864157 None:intergenic 30.0%
TGATATATTTAATCAGCGAG+CGG + chr1_1:5864138-5864157 Msa0003340:CDS 30.0%
!!! TCTACCTTCTTTTGATTTCT+AGG + chr1_1:5864442-5864461 Msa0003340:intron 30.0%
CATTGTCAAATTTATCTGCA+AGG + chr1_1:5864625-5864644 Msa0003340:intron 30.0%
ATATGCACAATGTATGAAAC+TGG - chr1_1:5864723-5864742 None:intergenic 30.0%
!! GTGCATATCTCTAAAATTTG+TGG + chr1_1:5864735-5864754 Msa0003340:intron 30.0%
AAAAAGAGCTAGAATCTGTT+AGG + chr1_1:5864830-5864849 Msa0003340:CDS 30.0%
CTGATATTGCCTTTGTATTA+TGG + chr1_1:5864943-5864962 Msa0003340:intron 30.0%
! TGCTTATTTGCCATCATTTT+AGG + chr1_1:5864995-5865014 Msa0003340:intron 30.0%
!! TATTTGCCATCATTTTAGGT+TGG + chr1_1:5864999-5865018 Msa0003340:intron 30.0%
GTATAACCAACCTAAAATGA+TGG - chr1_1:5865008-5865027 None:intergenic 30.0%
! ACGCTTTTGAATCAATTAAC+TGG + chr1_1:5865044-5865063 Msa0003340:CDS 30.0%
AGTTGCAAATAGTTTATCCT+CGG - chr1_1:5865084-5865103 None:intergenic 30.0%
TCAACAATGAAACAATGTCT+AGG - chr1_1:5865178-5865197 None:intergenic 30.0%
ATCTTTCTTACTAGTGTAGT+AGG - chr1_1:5865537-5865556 None:intergenic 30.0%
AGCAAAATCAATTGTAACAG+AGG - chr1_1:5865561-5865580 None:intergenic 30.0%
TAAAAGAACTAGACAACTTC+TGG + chr1_1:5865797-5865816 Msa0003340:intron 30.0%
ATCATCAATTCCAAAGTTGA+TGG + chr1_1:5865925-5865944 Msa0003340:CDS 30.0%
AAACTGCAATAGTTGTGTAA+AGG - chr1_1:5865990-5866009 None:intergenic 30.0%
GAATTAATTCGGAGTTAACA+AGG - chr1_1:5866116-5866135 None:intergenic 30.0%
CAATTTCATCCCAAATAATG+TGG - chr1_1:5866165-5866184 None:intergenic 30.0%
TTATGAACAAGCTATCCTAA+AGG - chr1_1:5866306-5866325 None:intergenic 30.0%
AGAAGAAATAAGCATGTGAA+TGG - chr1_1:5866351-5866370 None:intergenic 30.0%
! TTCACATGCTTATTTCTTCT+AGG + chr1_1:5866351-5866370 Msa0003340:intron 30.0%
GGATTAGAAATGACAACATT+AGG + chr1_1:5866676-5866695 Msa0003340:intron 30.0%
AAAATAAGCTTAGGTGGTTT+GGG + chr1_1:5866738-5866757 Msa0003340:intron 30.0%
AGATTTAGAGATCAATGAGT+TGG + chr1_1:5866877-5866896 Msa0003340:intron 30.0%
! TCTGGCATATCTTTTTCTTA+TGG + chr1_1:5867051-5867070 Msa0003340:intron 30.0%
! TTTTCTTATGGCAGATTGAT+AGG + chr1_1:5867063-5867082 Msa0003340:intron 30.0%
TTTCTTATGGCAGATTGATA+GGG + chr1_1:5867064-5867083 Msa0003340:intron 30.0%
! GCTTTGTTACCATTTGAAAA+TGG + chr1_1:5867328-5867347 Msa0003340:CDS 30.0%
! TGGATTTCCTGACATTTTAT+CGG + chr1_1:5867482-5867501 Msa0003340:intron 30.0%
TTTCATACATATCTGTCACT+AGG + chr1_1:5867656-5867675 Msa0003340:three_prime_UTR 30.0%
! GTACAGTTTTACATGAGTTA+AGG - chr1_1:5867773-5867792 None:intergenic 30.0%
ATTAGCAAGCCCTTAAAAAT+GGG + chr1_1:5867820-5867839 Msa0003340:three_prime_UTR 30.0%
GTTAAGAGAGAAAGAGGATA+AGG - chr1_1:5861569-5861588 None:intergenic 35.0%
TGTAACGTTAAGAGAGAAAG+AGG - chr1_1:5861575-5861594 None:intergenic 35.0%
!! AGTAGTGGCTTTATCTTCAT+CGG - chr1_1:5861701-5861720 None:intergenic 35.0%
! ATTTTTACACGAGCTCATAG+TGG - chr1_1:5862173-5862192 None:intergenic 35.0%
AAGAGAAAAACTGGAGCTTA+TGG - chr1_1:5862254-5862273 None:intergenic 35.0%
! AGGTTTGGTAAGAGAAAAAC+TGG - chr1_1:5862263-5862282 None:intergenic 35.0%
! TAACTAGTCTAACTTAGTGC+AGG - chr1_1:5862283-5862302 None:intergenic 35.0%
!! TTTTGAAGAGAAAGCGTATC+TGG + chr1_1:5862450-5862469 Msa0003340:CDS 35.0%
GGTGAAGTTAGTGATTCATT+TGG + chr1_1:5862490-5862509 Msa0003340:CDS 35.0%
ATAGATATCGTATCTGGAAG+TGG + chr1_1:5862645-5862664 Msa0003340:intron 35.0%
ATCTGGAAGTGGAATATTTC+AGG + chr1_1:5862656-5862675 Msa0003340:intron 35.0%
TGGAGTTGTTAATCTGGATA+GGG - chr1_1:5862735-5862754 None:intergenic 35.0%
ATGGAGTTGTTAATCTGGAT+AGG - chr1_1:5862736-5862755 None:intergenic 35.0%
CACATCAAAGACATTGAAAC+AGG + chr1_1:5862954-5862973 Msa0003340:intron 35.0%
CAAAGACATTGAAACAGGAT+TGG + chr1_1:5862959-5862978 Msa0003340:intron 35.0%
GCATGACAATAAACAACAAC+AGG - chr1_1:5863042-5863061 None:intergenic 35.0%
ATGGTTGGGTAAAGTAGAAA+AGG - chr1_1:5863193-5863212 None:intergenic 35.0%
TCAGTAATGTCTCCATCATT+GGG - chr1_1:5863269-5863288 None:intergenic 35.0%
ATCAGTAATGTCTCCATCAT+TGG - chr1_1:5863270-5863289 None:intergenic 35.0%
! TTCCCTTTTTCTTCTCCTAT+CGG + chr1_1:5863473-5863492 Msa0003340:intron 35.0%
! AAGTCTGAAACTGAGTCATA+TGG - chr1_1:5863511-5863530 None:intergenic 35.0%
! AACACATGAAGCATCTTTAC+AGG + chr1_1:5864162-5864181 Msa0003340:CDS 35.0%
! AAGGTAGAGTATCAGAATAG+GGG - chr1_1:5864430-5864449 None:intergenic 35.0%
! GAAGGTAGAGTATCAGAATA+GGG - chr1_1:5864431-5864450 None:intergenic 35.0%
! AGAAGGTAGAGTATCAGAAT+AGG - chr1_1:5864432-5864451 None:intergenic 35.0%
GCAACCTAGAAATCAAAAGA+AGG - chr1_1:5864449-5864468 None:intergenic 35.0%
! TTTTTGTTAGACGAGGTAGT+TGG - chr1_1:5864490-5864509 None:intergenic 35.0%
TACCTCGTCTAACAAAAATG+TGG + chr1_1:5864492-5864511 Msa0003340:CDS 35.0%
GGGTGAAAAACAAATAGAAG+TGG + chr1_1:5864556-5864575 Msa0003340:CDS 35.0%
CAACTTTAGATCCAACTACA+AGG + chr1_1:5865099-5865118 Msa0003340:CDS 35.0%
CAGGTCAGTAAAAATTTACC+TGG + chr1_1:5865128-5865147 Msa0003340:intron 35.0%
ACAGTCATTTCCTCTGTTTA+CGG + chr1_1:5865315-5865334 Msa0003340:intron 35.0%
!! TCTTGTGTGGGTTGAATTTT+AGG + chr1_1:5865413-5865432 Msa0003340:intron 35.0%
! GCTTTTATCCAGATGAAGAA+TGG + chr1_1:5865465-5865484 Msa0003340:intron 35.0%
TATCCAGATGAAGAATGGAA+AGG + chr1_1:5865470-5865489 Msa0003340:intron 35.0%
TAAAACCAACAGTGTCTGTT+AGG - chr1_1:5865503-5865522 None:intergenic 35.0%
! GATATCAGAGTCATCACTTT+TGG + chr1_1:5865701-5865720 Msa0003340:CDS 35.0%
!! CAATTCCAAAGTTGATGGTT+TGG + chr1_1:5865930-5865949 Msa0003340:CDS 35.0%
TTGTTCCAAACCATCAACTT+TGG - chr1_1:5865938-5865957 None:intergenic 35.0%
!! AAAGTTGATGGTTTGGAACA+AGG + chr1_1:5865937-5865956 Msa0003340:CDS 35.0%
!! GGAACAAGGTATTGGAAAAA+TGG + chr1_1:5865951-5865970 Msa0003340:intron 35.0%
CATCCCAAATAATGTGGTAT+AGG - chr1_1:5866159-5866178 None:intergenic 35.0%
! TGGGATGAAATTGTCACTTA+CGG + chr1_1:5866172-5866191 Msa0003340:intron 35.0%
!! TCTTCTAGGATAGTTGATTC+AGG + chr1_1:5866365-5866384 Msa0003340:intron 35.0%
ATCTTAAAACGTTGTCATGC+TGG + chr1_1:5866416-5866435 Msa0003340:intron 35.0%
!!! AACTGCTTTTGGTTCAAAAC+TGG + chr1_1:5866544-5866563 Msa0003340:intron 35.0%
TTGTTCATCAGTTTCTCACA+AGG + chr1_1:5866581-5866600 Msa0003340:intron 35.0%
TATGCATAAAGTAAGCGTAG+CGG + chr1_1:5866608-5866627 Msa0003340:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr1_1:5866712-5866731 Msa0003340:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr1_1:5866715-5866734 Msa0003340:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr1_1:5866719-5866738 None:intergenic 35.0%
!! AGATGGTGGAAAATAAGCTT+AGG + chr1_1:5866729-5866748 Msa0003340:intron 35.0%
GAAAATAAGCTTAGGTGGTT+TGG + chr1_1:5866737-5866756 Msa0003340:intron 35.0%
TCTCCTTACTACAGAATCTA+CGG - chr1_1:5866780-5866799 None:intergenic 35.0%
AGTCAGATTACAAGAGATAG+AGG + chr1_1:5866818-5866837 Msa0003340:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_1:5866889-5866908 Msa0003340:intron 35.0%
!! AAGCTTTTTCCCACTAAATG+GGG - chr1_1:5866958-5866977 None:intergenic 35.0%
!! CAAGCTTTTTCCCACTAAAT+GGG - chr1_1:5866959-5866978 None:intergenic 35.0%
!! AGCTTCTAGACTGATTTTCT+GGG - chr1_1:5867099-5867118 None:intergenic 35.0%
TGCAGTTCAAGACAAACTAA+AGG + chr1_1:5867184-5867203 Msa0003340:CDS 35.0%
TATTCTTTAACAGGACTCCA+TGG + chr1_1:5867294-5867313 Msa0003340:intron 35.0%
! TTTTCTCAACCATTCCAACT+TGG - chr1_1:5867375-5867394 None:intergenic 35.0%
TACGAATCCGATAAAATGTC+AGG - chr1_1:5867492-5867511 None:intergenic 35.0%
ATATAGGAATATACCGAGCA+AGG + chr1_1:5867511-5867530 Msa0003340:intron 35.0%
TATAGGAATATACCGAGCAA+GGG + chr1_1:5867512-5867531 Msa0003340:intron 35.0%
GTTTAAGAAAGTTAAGGTCG+TGG - chr1_1:5867607-5867626 None:intergenic 35.0%
ATAATTGTATATCTCGCAGG+TGG - chr1_1:5867729-5867748 None:intergenic 35.0%
! ATAATGACTTGCAGCATAAC+AGG + chr1_1:5867747-5867766 Msa0003340:three_prime_UTR 35.0%
GATTAGCAAGCCCTTAAAAA+TGG + chr1_1:5867819-5867838 Msa0003340:three_prime_UTR 35.0%
TTAGCAAGCCCTTAAAAATG+GGG + chr1_1:5867821-5867840 Msa0003340:three_prime_UTR 35.0%
ATGAAATGCGCATGCGTTAA+CGG + chr1_1:5861409-5861428 Msa0003340:CDS 40.0%
TGAAGTTCTTCAGTGTTGTG+CGG - chr1_1:5861598-5861617 None:intergenic 40.0%
!! GTAGTGGCTTTATCTTCATC+GGG - chr1_1:5861700-5861719 None:intergenic 40.0%
TGTTGTTACTGTTATCGTCG+TGG - chr1_1:5861753-5861772 None:intergenic 40.0%
AACAAACCTCTCTTCCGTTA+CGG - chr1_1:5861795-5861814 None:intergenic 40.0%
GCTGATAACCTTCCTTATAG+CGG + chr1_1:5862083-5862102 Msa0003340:intron 40.0%
CTGATAACCTTCCTTATAGC+GGG + chr1_1:5862084-5862103 Msa0003340:intron 40.0%
TGATAACCTTCCTTATAGCG+GGG + chr1_1:5862085-5862104 Msa0003340:intron 40.0%
AGTCTAACTTAGTGCAGGTT+TGG - chr1_1:5862278-5862297 None:intergenic 40.0%
AGCTGATACTGCTGGATTAT+TGG + chr1_1:5862546-5862565 Msa0003340:CDS 40.0%
GGTATACTTCTGGTAAGTAG+AGG - chr1_1:5862578-5862597 None:intergenic 40.0%
ATTTAACTGTGCCCCAATGA+TGG + chr1_1:5863254-5863273 Msa0003340:intron 40.0%
CAGTAATGTCTCCATCATTG+GGG - chr1_1:5863268-5863287 None:intergenic 40.0%
TGATAAAACAGAGGAGTCTG+AGG - chr1_1:5863310-5863329 None:intergenic 40.0%
TCATCGGCATGATAAAACAG+AGG - chr1_1:5863319-5863338 None:intergenic 40.0%
GCACAATATTGTTTACAGGC+AGG + chr1_1:5863386-5863405 Msa0003340:intron 40.0%
! TCCCTTTTTCTTCTCCTATC+GGG + chr1_1:5863474-5863493 Msa0003340:intron 40.0%
TCCCGATAGGAGAAGAAAAA+GGG - chr1_1:5863478-5863497 None:intergenic 40.0%
!! TTTGATGATGAGCTATCAGC+TGG + chr1_1:5863641-5863660 Msa0003340:CDS 40.0%
!! TTGATGATGAGCTATCAGCT+GGG + chr1_1:5863642-5863661 Msa0003340:CDS 40.0%
ACAAATCCTCAAAAGCAACC+TGG - chr1_1:5863775-5863794 None:intergenic 40.0%
! TTTTCAGTAAGAAGGTGGTG+AGG + chr1_1:5863845-5863864 Msa0003340:intron 40.0%
TGCTCCACTTTGCATTGTAT+CGG + chr1_1:5863934-5863953 Msa0003340:intron 40.0%
!! AACCTGGAAAAGGTTTTTGG+TGG + chr1_1:5864079-5864098 Msa0003340:CDS 40.0%
TGCAAAAGAGGACTTTCCTA+TGG + chr1_1:5864225-5864244 Msa0003340:intron 40.0%
TATTACCAGAAACAGAGCTC+TGG + chr1_1:5864385-5864404 Msa0003340:intron 40.0%
CTAGGTTGCATTAGCACAAA+TGG + chr1_1:5864460-5864479 Msa0003340:intron 40.0%
! GTCCACATTTTTGTTAGACG+AGG - chr1_1:5864497-5864516 None:intergenic 40.0%
AAACTAACCAAGGATACCAC+AGG - chr1_1:5864901-5864920 None:intergenic 40.0%
GACTGTTGCAAAACTAACCA+AGG - chr1_1:5864911-5864930 None:intergenic 40.0%
!! TAGGTTGGTTATACGAATGC+TGG + chr1_1:5865014-5865033 Msa0003340:intron 40.0%
AATTCAACCCACACAAGACT+CGG - chr1_1:5865411-5865430 None:intergenic 40.0%
ACTCCTTTCCATTCTTCATC+TGG - chr1_1:5865476-5865495 None:intergenic 40.0%
TTTCTCCTAACAGACACTGT+TGG + chr1_1:5865495-5865514 Msa0003340:CDS 40.0%
TGGTGCATGTGATTGATATC+AGG + chr1_1:5865721-5865740 Msa0003340:CDS 40.0%
CACAGCATTTATCTGTTGCT+CGG - chr1_1:5865879-5865898 None:intergenic 40.0%
! GATGGTTTGGAACAAGGTAT+TGG + chr1_1:5865943-5865962 Msa0003340:intron 40.0%
! TGAAATTGTCACTTACGGCA+AGG + chr1_1:5866177-5866196 Msa0003340:intron 40.0%
CACGAATTGCTTAAGCCTTT+AGG + chr1_1:5866288-5866307 Msa0003340:intron 40.0%
! CTAGGATAGTTGATTCAGGA+CGG + chr1_1:5866369-5866388 Msa0003340:intron 40.0%
CCAAAAGCAGTTCATAATCC+AGG - chr1_1:5866536-5866555 None:intergenic 40.0%
! CCTGGATTATGAACTGCTTT+TGG + chr1_1:5866533-5866552 Msa0003340:intron 40.0%
TGACAACATTAGGAGAGAGT+TGG + chr1_1:5866686-5866705 Msa0003340:intron 40.0%
GACAACATTAGGAGAGAGTT+GGG + chr1_1:5866687-5866706 Msa0003340:intron 40.0%
ACAACATTAGGAGAGAGTTG+GGG + chr1_1:5866688-5866707 Msa0003340:intron 40.0%
TGGTGGAAAATAAGCTTAGG+TGG + chr1_1:5866732-5866751 Msa0003340:intron 40.0%
CTCCTTACTACAGAATCTAC+GGG - chr1_1:5866779-5866798 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr1_1:5866790-5866809 Msa0003340:intron 40.0%
!! CCAAGCTTTTTCCCACTAAA+TGG - chr1_1:5866960-5866979 None:intergenic 40.0%
CCATTTAGTGGGAAAAAGCT+TGG + chr1_1:5866957-5866976 Msa0003340:intron 40.0%
TGAATCAGTTCTTCCTTCAC+CGG + chr1_1:5866986-5867005 Msa0003340:intron 40.0%
ATTCAAGTGCACAGTAAAGC+CGG - chr1_1:5867008-5867027 None:intergenic 40.0%
CTGTTACAGCTTGAACATTC+TGG + chr1_1:5867033-5867052 Msa0003340:intron 40.0%
!! GCTTCTAGACTGATTTTCTG+GGG - chr1_1:5867098-5867117 None:intergenic 40.0%
!! CAGCTTCTAGACTGATTTTC+TGG - chr1_1:5867100-5867119 None:intergenic 40.0%
CAGAAAATCAGTCTAGAAGC+TGG + chr1_1:5867098-5867117 Msa0003340:CDS 40.0%
GTATGCATATCTGCCTTAAG+TGG + chr1_1:5867137-5867156 Msa0003340:CDS 40.0%
TTTAACAGGACTCCATGGTA+TGG + chr1_1:5867299-5867318 Msa0003340:intron 40.0%
TTAACAGGACTCCATGGTAT+GGG + chr1_1:5867300-5867319 Msa0003340:intron 40.0%
! AGAAGGTCCCCATTTTCAAA+TGG - chr1_1:5867340-5867359 None:intergenic 40.0%
!! AACCATTCCAACTTGGTGTA+TGG - chr1_1:5867368-5867387 None:intergenic 40.0%
CTTGATATATGTCCCTTGCT+CGG - chr1_1:5867527-5867546 None:intergenic 40.0%
CATACATATCTGTCACTAGG+TGG + chr1_1:5867659-5867678 Msa0003340:three_prime_UTR 40.0%
!! AACACGGTCCCCATTTTTAA+GGG - chr1_1:5867832-5867851 None:intergenic 40.0%
ATCCTTCAACGCTTTCAACA+CGG - chr1_1:5867848-5867867 None:intergenic 40.0%
TTATCTTCATCGGGAGTTGG+AGG - chr1_1:5861691-5861710 None:intergenic 45.0%
GCTTTATCTTCATCGGGAGT+TGG - chr1_1:5861694-5861713 None:intergenic 45.0%
TAGTTTCCCCGCTATAAGGA+AGG - chr1_1:5862094-5862113 None:intergenic 45.0%
! GAAGAGAAAGCGTATCTGGT+TGG + chr1_1:5862454-5862473 Msa0003340:CDS 45.0%
!! CTGGTTGGTGTTGAGAGAAA+AGG + chr1_1:5862469-5862488 Msa0003340:CDS 45.0%
!!! CTTGAGTGCTGCTTTCCTTT+TGG + chr1_1:5863063-5863082 Msa0003340:intron 45.0%
CATGGTCATGCTCGTATACT+TGG + chr1_1:5863156-5863175 Msa0003340:intron 45.0%
GTCCCGATAGGAGAAGAAAA+AGG - chr1_1:5863479-5863498 None:intergenic 45.0%
TGGCAATATGTTGTCCCGAT+AGG - chr1_1:5863491-5863510 None:intergenic 45.0%
AAGTTGGAACCATAAGAGCC+AGG + chr1_1:5863754-5863773 Msa0003340:intron 45.0%
! CAAAAGCAACCTGGCTCTTA+TGG - chr1_1:5863766-5863785 None:intergenic 45.0%
!!! TAAGAGCCAGGTTGCTTTTG+AGG + chr1_1:5863766-5863785 Msa0003340:intron 45.0%
TTTGGGTGTAGTCACTGTAG+CGG - chr1_1:5863961-5863980 None:intergenic 45.0%
! CGCAACCTGGAAAAGGTTTT+TGG + chr1_1:5864076-5864095 Msa0003340:CDS 45.0%
! CTCCACCAAAAACCTTTTCC+AGG - chr1_1:5864084-5864103 None:intergenic 45.0%
ATTTGCCAGAGCTCTGTTTC+TGG - chr1_1:5864393-5864412 None:intergenic 45.0%
! GAAACAGAGCTCTGGCAAAT+AGG + chr1_1:5864393-5864412 Msa0003340:intron 45.0%
ACTCATCTTGAGCGTCAATC+AGG + chr1_1:5864515-5864534 Msa0003340:CDS 45.0%
! ATGCATGGGCTTTGACAGAT+CGG + chr1_1:5864799-5864818 Msa0003340:intron 45.0%
ACCGAAAGCAGTACCGTAAT+CGG + chr1_1:5864857-5864876 Msa0003340:CDS 45.0%
! TCCAACTACAAGGAGAGTAC+AGG + chr1_1:5865109-5865128 Msa0003340:CDS 45.0%
ACCTGTACTCTCCTTGTAGT+TGG - chr1_1:5865113-5865132 None:intergenic 45.0%
GAGGAAATGACTGTGCTGTA+AGG - chr1_1:5865309-5865328 None:intergenic 45.0%
! CAAGAAACCGAGTCTTGTGT+GGG + chr1_1:5865401-5865420 Msa0003340:intron 45.0%
CCTGCAGAGAGCAGAAAAAA+TGG - chr1_1:5865653-5865672 None:intergenic 45.0%
!!! CCATTTTTTCTGCTCTCTGC+AGG + chr1_1:5865650-5865669 Msa0003340:intron 45.0%
ATTTATCTGTTGCTCGGCCA+GGG - chr1_1:5865873-5865892 None:intergenic 45.0%
CGAGCAACAGATAAATGCTG+TGG + chr1_1:5865877-5865896 Msa0003340:CDS 45.0%
GGACAAAGTTCTGTCAGAAC+TGG + chr1_1:5865898-5865917 Msa0003340:CDS 45.0%
!! TTACGGCAAGGACTAGCTTA+AGG + chr1_1:5866189-5866208 Msa0003340:intron 45.0%
GGATGTGTGGTAAGACTAGA+CGG + chr1_1:5866649-5866668 Msa0003340:intron 45.0%
GATGTGTGGTAAGACTAGAC+GGG + chr1_1:5866650-5866669 Msa0003340:intron 45.0%
GACCCGTAGATTCTGTAGTA+AGG + chr1_1:5866774-5866793 Msa0003340:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr1_1:5866793-5866812 Msa0003340:intron 45.0%
ACTAAATGGGGTCAGCTACA+TGG - chr1_1:5866946-5866965 None:intergenic 45.0%
ATGTAGCTGACCCCATTTAG+TGG + chr1_1:5866945-5866964 Msa0003340:intron 45.0%
TGTAGCTGACCCCATTTAGT+GGG + chr1_1:5866946-5866965 Msa0003340:intron 45.0%
ATATCTGCCTTAAGTGGCGA+TGG + chr1_1:5867143-5867162 Msa0003340:CDS 45.0%
TTGTATGCCATCGCCACTTA+AGG - chr1_1:5867153-5867172 None:intergenic 45.0%
! CACCATACACCAAGTTGGAA+TGG + chr1_1:5867363-5867382 Msa0003340:CDS 45.0%
GCTACCTGTTGATCATAGTC+TGG + chr1_1:5867419-5867438 Msa0003340:intron 45.0%
TCTGCCAGACTATGATCAAC+AGG - chr1_1:5867426-5867445 None:intergenic 45.0%
CGAGCAAGGGACATATATCA+AGG + chr1_1:5867525-5867544 Msa0003340:CDS 45.0%
AAGCAACCTCGCATAACGTA+GGG - chr1_1:5867560-5867579 None:intergenic 45.0%
TAAGCAACCTCGCATAACGT+AGG - chr1_1:5867561-5867580 None:intergenic 45.0%
GGTACACACAGTTGTCTCAT+AGG - chr1_1:5867586-5867605 None:intergenic 45.0%
!! CAACACGGTCCCCATTTTTA+AGG - chr1_1:5867833-5867852 None:intergenic 45.0%
!!! AATAATAAATTATTCATTTT+GGG - chr1_1:5863978-5863997 None:intergenic 5.0%
!!! TAATAATAAATTATTCATTT+TGG - chr1_1:5863979-5863998 None:intergenic 5.0%
AAATGCGCATGCGTTAACGG+TGG + chr1_1:5861412-5861431 Msa0003340:CDS 50.0%
TGGAAGTAAAACGGCGTCGT+TGG - chr1_1:5861644-5861663 None:intergenic 50.0%
AACCGCTTCAAGCTCCGTAA+CGG + chr1_1:5861778-5861797 Msa0003340:CDS 50.0%
TTCCGTTACGGAGCTTGAAG+CGG - chr1_1:5861783-5861802 None:intergenic 50.0%
! CAGCTAGTTTCCCCGCTATA+AGG - chr1_1:5862098-5862117 None:intergenic 50.0%
GAGCAGTTAGCTGATACTGC+TGG + chr1_1:5862538-5862557 Msa0003340:CDS 50.0%
CCAATGTACGTCCTAGGGTT+TGG - chr1_1:5863560-5863579 None:intergenic 50.0%
CCAAACCCTAGGACGTACAT+TGG + chr1_1:5863557-5863576 Msa0003340:CDS 50.0%
CAGAGCCAATGTACGTCCTA+GGG - chr1_1:5863565-5863584 None:intergenic 50.0%
GATGAGCTATCAGCTGGGTA+AGG + chr1_1:5863647-5863666 Msa0003340:intron 50.0%
CAAAGTGGAGCAGAACAGTC+TGG - chr1_1:5863926-5863945 None:intergenic 50.0%
CGGACCGATACAATGCAAAG+TGG - chr1_1:5863941-5863960 None:intergenic 50.0%
TACTGATCCCTGCTGATCCT+AGG + chr1_1:5864047-5864066 Msa0003340:intron 50.0%
CATCTTGAGCGTCAATCAGG+AGG + chr1_1:5864518-5864537 Msa0003340:CDS 50.0%
TCAATCAGGAGGACAGGTGA+AGG + chr1_1:5864529-5864548 Msa0003340:CDS 50.0%
CAATCAGGAGGACAGGTGAA+GGG + chr1_1:5864530-5864549 Msa0003340:CDS 50.0%
GCCGATTACGGTACTGCTTT+CGG - chr1_1:5864861-5864880 None:intergenic 50.0%
! GTACTGAGAGACGCCGATTA+CGG - chr1_1:5864873-5864892 None:intergenic 50.0%
! GCAAGAAACCGAGTCTTGTG+TGG + chr1_1:5865400-5865419 Msa0003340:intron 50.0%
TTTCTGCTCTCTGCAGGTTG+CGG + chr1_1:5865656-5865675 Msa0003340:intron 50.0%
CTCTGATATCTCCTCCAGTG+TGG - chr1_1:5865691-5865710 None:intergenic 50.0%
TTTATCTGTTGCTCGGCCAG+GGG - chr1_1:5865872-5865891 None:intergenic 50.0%
CATTTATCTGTTGCTCGGCC+AGG - chr1_1:5865874-5865893 None:intergenic 50.0%
AGCATGTGAATGGTCACGAG+AGG - chr1_1:5866341-5866360 None:intergenic 50.0%
TGATTCAGGACGGCAACAAG+AGG + chr1_1:5866379-5866398 Msa0003340:intron 50.0%
GATTCAGGACGGCAACAAGA+GGG + chr1_1:5866380-5866399 Msa0003340:intron 50.0%
GTGGTAAGACTAGACGGGAT+AGG + chr1_1:5866655-5866674 Msa0003340:intron 50.0%
CAAAGCTTCCACCCATACCA+TGG - chr1_1:5867314-5867333 None:intergenic 50.0%
! CTTGGTGTATGGTGCTGAGA+AGG - chr1_1:5867357-5867376 None:intergenic 50.0%
CTCAGCACCATACACCAAGT+TGG + chr1_1:5867358-5867377 Msa0003340:CDS 50.0%
AGCAACCTCGCATAACGTAG+GGG - chr1_1:5867559-5867578 None:intergenic 50.0%
!! GACCGTGTTGAAAGCGTTGA+AGG + chr1_1:5867843-5867862 Msa0003340:three_prime_UTR 50.0%
! CAAGCTCCGTAACGGAAGAG+AGG + chr1_1:5861786-5861805 Msa0003340:CDS 55.0%
! GGCTTGCTTCTCCAAACCCT+AGG + chr1_1:5863546-5863565 Msa0003340:intron 55.0%
CCAGAGCCAATGTACGTCCT+AGG - chr1_1:5863566-5863585 None:intergenic 55.0%
!! CCTAGGACGTACATTGGCTC+TGG + chr1_1:5863563-5863582 Msa0003340:CDS 55.0%
GCAGTTGCCTAGGATCAGCA+GGG - chr1_1:5864057-5864076 None:intergenic 55.0%
GCAACTGCGCAACCTGGAAA+AGG + chr1_1:5864069-5864088 Msa0003340:CDS 55.0%
TGAGCGTCAATCAGGAGGAC+AGG + chr1_1:5864523-5864542 Msa0003340:CDS 55.0%
AGGAGGACAGGTGAAGGGAA+TGG + chr1_1:5864535-5864554 Msa0003340:CDS 55.0%
GGAGGACAGGTGAAGGGAAT+GGG + chr1_1:5864536-5864555 Msa0003340:CDS 55.0%
TCTCTCAGTACCTGTGCCTG+TGG + chr1_1:5864882-5864901 Msa0003340:CDS 55.0%
ACCTGTGCCTGTGGTATCCT+TGG + chr1_1:5864891-5864910 Msa0003340:CDS 55.0%
ACCAAGGATACCACAGGCAC+AGG - chr1_1:5864895-5864914 None:intergenic 55.0%
TGGAGCAGATGTTCTTGCCG+AGG + chr1_1:5865064-5865083 Msa0003340:CDS 55.0%
CCAAGGGACACCGTAAACAG+AGG - chr1_1:5865328-5865347 None:intergenic 55.0%
CCTCTGTTTACGGTGTCCCT+TGG + chr1_1:5865325-5865344 Msa0003340:intron 55.0%
CATGAATTGCAGTCACCCCC+TGG + chr1_1:5865853-5865872 Msa0003340:intron 55.0%
TTATCTGTTGCTCGGCCAGG+GGG - chr1_1:5865871-5865890 None:intergenic 55.0%
ACGATGTCGCGTTGGATGTG+TGG + chr1_1:5866636-5866655 Msa0003340:intron 55.0%
GTGCACAGTAAAGCCGGTGA+AGG - chr1_1:5867002-5867021 None:intergenic 55.0%
ACAGGACTCCATGGTATGGG+TGG + chr1_1:5867303-5867322 Msa0003340:intron 55.0%
ATGTGCCCCTACGTTATGCG+AGG + chr1_1:5867551-5867570 Msa0003340:CDS 55.0%
TGCGCATGCGTTAACGGTGG+TGG + chr1_1:5861415-5861434 Msa0003340:CDS 60.0%
CGCAGTTGCCTAGGATCAGC+AGG - chr1_1:5864058-5864077 None:intergenic 60.0%
TCCTAGGCAACTGCGCAACC+TGG + chr1_1:5864063-5864082 Msa0003340:intron 60.0%
TCCAGGTTGCGCAGTTGCCT+AGG - chr1_1:5864067-5864086 None:intergenic 60.0%
!! CTCCTCCAGTGTGGCTCTGA+AGG - chr1_1:5865682-5865701 None:intergenic 60.0%
TGCGGCCTTCAGAGCCACAC+TGG + chr1_1:5865674-5865693 Msa0003340:CDS 65.0%
GGCCTTCAGAGCCACACTGG+AGG + chr1_1:5865677-5865696 Msa0003340:CDS 65.0%
CGGAGACGACGATGTCGCGT+TGG + chr1_1:5866628-5866647 Msa0003340:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5861351 5867892 5861351 ID=Msa0003340;Name=Msa0003340
chr1_1 mRNA 5861351 5867892 5861351 ID=Msa0003340-mRNA-1;Parent=Msa0003340;Name=Msa0003340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=55|1|1|1|1|1|13|277|558
chr1_1 exon 5861351 5861807 5861351 ID=Msa0003340-mRNA-1:exon:1766;Parent=Msa0003340-mRNA-1
chr1_1 exon 5862448 5862590 5862448 ID=Msa0003340-mRNA-1:exon:1767;Parent=Msa0003340-mRNA-1
chr1_1 exon 5863547 5863663 5863547 ID=Msa0003340-mRNA-1:exon:1768;Parent=Msa0003340-mRNA-1
chr1_1 exon 5864069 5864183 5864069 ID=Msa0003340-mRNA-1:exon:1769;Parent=Msa0003340-mRNA-1
chr1_1 exon 5864464 5864601 5864464 ID=Msa0003340-mRNA-1:exon:1770;Parent=Msa0003340-mRNA-1
chr1_1 exon 5864817 5864912 5864817 ID=Msa0003340-mRNA-1:exon:1771;Parent=Msa0003340-mRNA-1
chr1_1 exon 5865017 5865130 5865017 ID=Msa0003340-mRNA-1:exon:1772;Parent=Msa0003340-mRNA-1
chr1_1 exon 5865477 5865545 5865477 ID=Msa0003340-mRNA-1:exon:1773;Parent=Msa0003340-mRNA-1
chr1_1 exon 5865672 5865742 5865672 ID=Msa0003340-mRNA-1:exon:1774;Parent=Msa0003340-mRNA-1
chr1_1 exon 5865865 5865958 5865865 ID=Msa0003340-mRNA-1:exon:1775;Parent=Msa0003340-mRNA-1
chr1_1 exon 5867077 5867205 5867077 ID=Msa0003340-mRNA-1:exon:1776;Parent=Msa0003340-mRNA-1
chr1_1 exon 5867307 5867396 5867307 ID=Msa0003340-mRNA-1:exon:1777;Parent=Msa0003340-mRNA-1
chr1_1 exon 5867517 5867892 5867517 ID=Msa0003340-mRNA-1:exon:1778;Parent=Msa0003340-mRNA-1
chr1_1 five_prime_UTR 5861351 5861405 5861351 ID=Msa0003340-mRNA-1:five_prime_utr;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5861406 5861807 5861406 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5862448 5862590 5862448 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5863547 5863663 5863547 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5864069 5864183 5864069 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5864464 5864601 5864464 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5864817 5864912 5864817 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5865017 5865130 5865017 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5865477 5865545 5865477 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5865672 5865742 5865672 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5865865 5865958 5865865 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5867077 5867205 5867077 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5867307 5867396 5867307 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 CDS 5867517 5867615 5867517 ID=Msa0003340-mRNA-1:cds;Parent=Msa0003340-mRNA-1
chr1_1 three_prime_UTR 5867616 5867892 5867616 ID=Msa0003340-mRNA-1:three_prime_utr;Parent=Msa0003340-mRNA-1
Gene Sequence

>Msa0003340

ATGATGAAATGCGCATGCGTTAACGGTGGTGGTTCTGCTATTCTTCAATCATCTTCTTCTTCTTCTTCTTCTTCATCAATTCGATTTCAATTTCAACAACAACGCTATCATCATCATCATCATCATCATCAACGTTATCTAAATCTTCTTCGCTCTCGTTCCTTATCCTCTTTCTCTCTTAACGTTACACCGCACAACACTGAAGAACTTCAACTCTCTTCTTCTTCTTTTTTCTCCAACGACGCCGTTTTACTTCCAATTCAAGAACAAGAACAATCATCTCCTCCAACTCCCGATGAAGATAAAGCCACTACTAAGCTTAAAAAAAAGAAGAAAGATCAAAACCACGACGATAACAGTAACAACATCGATAACCGCTTCAAGCTCCGTAACGGAAGAGAGGTTTTTGAAGAGAAAGCGTATCTGGTTGGTGTTGAGAGAAAAGGTGAAGTTAGTGATTCATTTGGTATAGAAGATTCTTTGAGTGAATTGGAGCAGTTAGCTGATACTGCTGGATTATTGGTTGTTGCCTCTACTTACCAGAAGCTTGCTTCTCCAAACCCTAGGACGTACATTGGCTCTGGTAAAGTTTCTGAAATTAAGAGTGCAATTAATGCATTGGACGTTGAAACTGTGATATTTGATGATGAGCTATCAGCTGGGCAACTGCGCAACCTGGAAAAGGTTTTTGGTGGAGATGTGAGAGTTTGCGATCGAACTGCTCTAATCCTTGATATATTTAATCAGCGAGCGGCAACACATGAAGCATCTTTACAGGTTGCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGTAACCAAATCGGTGTTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTACCGTAATCGGCGTCTCTCAGTACCTGTGCCTGTGGTATCCTTGGTTGGTTATACGAATGCTGGTAAGAGTACGCTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAACTATTTGCAACTTTAGATCCAACTACAAGGAGAGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCGGCCTTCAGAGCCACACTGGAGGAGATATCAGAGTCATCACTTTTGGTGCATGTGATTGATATCAGTCACCCCCTGGCCGAGCAACAGATAAATGCTGTGGACAAAGTTCTGTCAGAACTGGATGTATCATCAATTCCAAAGTTGATGGTTTGGAACAAGATTGATAGGGCTAGTGATCCCCAGAAAATCAGTCTAGAAGCTGGAAAAAGAGATGATGTTGTATGCATATCTGCCTTAAGTGGCGATGGCATACAAGAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACTCCATGGTATGGGTGGAAGCTTTGTTACCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAAGTTGGAATGGTTGAGAAAACTGAATATACCGAGCAAGGGACATATATCAAGGCTCATGTGCCCCTACGTTATGCGAGGTTGCTTACACCTATGAGACAACTGTGTGTACCACGACCTTAA

Protein sequence

>Msa0003340

MMKCACVNGGGSAILQSSSSSSSSSSIRFQFQQQRYHHHHHHHQRYLNLLRSRSLSSFSLNVTPHNTEELQLSSSSFFSNDAVLLPIQEQEQSSPPTPDEDKATTKLKKKKKDQNHDDNSNNIDNRFKLRNGREVFEEKAYLVGVERKGEVSDSFGIEDSLSELEQLADTAGLLVVASTYQKLASPNPRTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKVFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQSGGQVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRLSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVDKVLSELDVSSIPKLMVWNKIDRASDPQKISLEAGKRDDVVCISALSGDGIQEFCNAVQDKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRYARLLTPMRQLCVPRP*