AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526000 MtrunA17_Chr7g0272161 84.653 202 6 1 2 203 5 181 6.07e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526000 AT5G27860.2 59.836 122 25 1 82 203 80 177 1.19e-29 108
Msa0526000 AT5G27860.1 59.836 122 25 1 82 203 80 177 1.19e-29 108

Find 100 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCCTCTATTGTTATTC+TGG 0.085496 3_4:-79710476 Msa0526000:three_prime_UTR
ATGTCTTGGCTCTTTGAAAT+TGG 0.244734 3_4:-79711279 Msa0526000:CDS
ATTACGCACCCAAGTAAAAT+TGG 0.260745 3_4:+79710734 None:intergenic
TACCAGCAAATCACCTTCTT+TGG 0.265893 3_4:+79711744 None:intergenic
TTCCCCTCTATTGTTATTCT+GGG 0.318071 3_4:-79710475 Msa0526000:three_prime_UTR
TGGATTTCTTTCGGATCTTA+AGG 0.321862 3_4:+79712169 None:intergenic
GCCATATGAGAGAAGCGATT+TGG 0.331117 3_4:+79712273 None:intergenic
GGTTGTAAATACAATTGATT+AGG 0.345889 3_4:-79710075 Msa0526000:three_prime_UTR
AGTGAGATTTGGATTTCTTT+CGG 0.354212 3_4:+79712160 None:intergenic
CATGTGTGGTTTACAGTCAA+TGG 0.371648 3_4:-79710612 Msa0526000:three_prime_UTR
CCATATGAGAGAAGCGATTT+GGG 0.377462 3_4:+79712274 None:intergenic
CTGCTGCTCCTTTCACCATT+CGG 0.378039 3_4:+79711161 None:intergenic
TAGCTTATGCATTCAATGCT+TGG 0.383851 3_4:-79710190 Msa0526000:three_prime_UTR
CAGTTCATTTCTCTTGCTCT+CGG 0.399682 3_4:+79710838 None:intergenic
CCCAAATCGCTTCTCTCATA+TGG 0.400613 3_4:-79712274 Msa0526000:exon
GGATTTCTTTCGGATCTTAA+GGG 0.407750 3_4:+79712170 None:intergenic
TCAAGCAATCTACAATTTAG+AGG 0.408247 3_4:-79710692 Msa0526000:three_prime_UTR
ATTACATATTCTGATACATA+AGG 0.409100 3_4:-79710419 Msa0526000:three_prime_UTR
TGGCTCTTTGAAATTGGAGC+TGG 0.410762 3_4:-79711273 Msa0526000:intron
AGGATCCTTGTTGAAACATA+TGG 0.412458 3_4:-79710333 Msa0526000:three_prime_UTR
GAAGGTATGGATTTGTTAAG+AGG 0.413335 3_4:-79710779 Msa0526000:three_prime_UTR
AGTCCTTGTTGTCGCGGTCT+CGG 0.413539 3_4:+79712193 None:intergenic
AGGTTGTTAAAAGTGTCTTT+AGG 0.416347 3_4:+79710213 None:intergenic
ACAAGGGTTTGTCTTCGATT+GGG 0.419122 3_4:+79712298 None:intergenic
ATAACCTTGGAAAGCTGCAC+AGG 0.423980 3_4:+79711137 None:intergenic
AACAAGGGTTTGTCTTCGAT+TGG 0.434734 3_4:+79712297 None:intergenic
GAAGAAGATATTGGTGGGTA+GGG 0.439694 3_4:-79712333 Msa0526000:five_prime_UTR
GTCCGTCGCAGTGCCGTATC+GGG 0.439911 3_4:-79710997 Msa0526000:CDS
TGTCCGTCGCAGTGCCGTAT+CGG 0.444932 3_4:-79710998 Msa0526000:CDS
GTCAATGGTTTCCTCTATTG+TGG 0.447734 3_4:-79710597 Msa0526000:three_prime_UTR
TTGTCTTCGATTGGGGAAAT+CGG 0.448002 3_4:+79712306 None:intergenic
CGCGGTCTCGGCGGCTGCGG+TGG 0.449012 3_4:+79712205 None:intergenic
TTACATATTCTGATACATAA+GGG 0.451756 3_4:-79710418 Msa0526000:three_prime_UTR
GTAAAAGTCATCGTCATAAA+CGG 0.452807 3_4:-79711638 Msa0526000:CDS
AATCTACAATTTAGAGGGGT+GGG 0.464409 3_4:-79710686 Msa0526000:three_prime_UTR
TGATTAGCACTGAGAAGGTA+TGG 0.466409 3_4:-79710792 Msa0526000:exon
GGAGGAAGAAGAATAAGAAT+CGG 0.483872 3_4:+79712092 None:intergenic
ATGAATCCGGCAAGGTCAAA+AGG 0.493340 3_4:+79710544 None:intergenic
CAATTTAGAGGGGTGGGGTG+CGG 0.494733 3_4:-79710680 Msa0526000:three_prime_UTR
CAGCCCTGTGCAGCTTTCCA+AGG 0.494864 3_4:-79711141 Msa0526000:intron
TTAGGGCGCAACAAAGATGA+TGG 0.501533 3_4:-79711021 Msa0526000:CDS
CCGACTAAACTCAATGAATC+CGG 0.507018 3_4:+79710531 None:intergenic
CATAACAAAATCCACAATAG+AGG 0.507467 3_4:+79710586 None:intergenic
TCCTTGCTAGAATAAGGAAA+AGG 0.507505 3_4:-79711667 Msa0526000:intron
CAAGGGTTTGTCTTCGATTG+GGG 0.509935 3_4:+79712299 None:intergenic
CCTCCCTCTCTGATTCATCC+AGG 0.511052 3_4:-79712074 Msa0526000:intron
GTATCATAAGCATCTAAGAC+TGG 0.512199 3_4:+79711320 None:intergenic
CCGGATTCATTGAGTTTAGT+CGG 0.515083 3_4:-79710531 Msa0526000:three_prime_UTR
AGGATCCTAGAGTCGGTACT+TGG 0.515915 3_4:+79710348 None:intergenic
AGAAGAAGATATTGGTGGGT+AGG 0.516525 3_4:-79712334 Msa0526000:five_prime_UTR
AAAGAGCGATAAACCAAAGA+AGG 0.525894 3_4:-79711757 Msa0526000:intron
TGATAAAACAAAGGAAGATA+AGG 0.526792 3_4:-79710864 Msa0526000:CDS
CCGCCGAGACCGCGACAACA+AGG 0.526959 3_4:-79712196 Msa0526000:CDS
TAATACCTTCTTGCCCGATA+CGG 0.527264 3_4:+79710984 None:intergenic
TGAGCCCAGAATAACAATAG+AGG 0.528765 3_4:+79710471 None:intergenic
TGTCGCGGTCTCGGCGGCTG+CGG 0.529009 3_4:+79712202 None:intergenic
CAAGCAATCTACAATTTAGA+GGG 0.530838 3_4:-79710691 Msa0526000:three_prime_UTR
TTGTGCCAAGTACCGACTCT+AGG 0.532249 3_4:-79710353 Msa0526000:three_prime_UTR
ATTCCAAGGTCAAGTTTACA+AGG 0.535708 3_4:+79710300 None:intergenic
CGACGTAAGCAGACATATAG+AGG 0.535710 3_4:+79710265 None:intergenic
AAGACATAATAAAATAAAGA+AGG 0.536268 3_4:+79711295 None:intergenic
AAGAAGATATTGGTGGGTAG+GGG 0.538456 3_4:-79712332 Msa0526000:five_prime_UTR
AGAAGAATAAGAATCGGAAT+CGG 0.539647 3_4:+79712098 None:intergenic
CAATCTACAATTTAGAGGGG+TGG 0.547206 3_4:-79710687 Msa0526000:three_prime_UTR
TTGTAAACTTGACCTTGGAA+TGG 0.547705 3_4:-79710298 Msa0526000:three_prime_UTR
GAGCCCAGAATAACAATAGA+GGG 0.549145 3_4:+79710472 None:intergenic
AAGGTATGGATTTGTTAAGA+GGG 0.551503 3_4:-79710778 Msa0526000:three_prime_UTR
ATGCCTTGTAAACTTGACCT+TGG 0.556594 3_4:-79710303 Msa0526000:three_prime_UTR
GCATAAGCACAGCGTAAAAG+AGG 0.563006 3_4:-79711616 Msa0526000:intron
AGCATTGAATGCATAAGCTA+AGG 0.565531 3_4:+79710193 None:intergenic
AAAATTAAGAAAATATCTAT+CGG 0.567636 3_4:+79710148 None:intergenic
CAGTGCCGTATCGGGCAAGA+AGG 0.568115 3_4:-79710989 Msa0526000:intron
TCAAGTTTGTTCAACATGTG+TGG 0.571411 3_4:-79710626 Msa0526000:three_prime_UTR
GGAAGAATCAGAAGAGAGAG+AGG 0.573784 3_4:+79712248 None:intergenic
GTGACGCTTGCGACGGTGAG+AGG 0.575207 3_4:+79712227 None:intergenic
ATCTACAATTTAGAGGGGTG+GGG 0.575541 3_4:-79710685 Msa0526000:three_prime_UTR
GGAGAGGTTGCTCCATTCCA+AGG 0.575893 3_4:+79710286 None:intergenic
TGCCCGATACGGCACTGCGA+CGG 0.576742 3_4:+79710995 None:intergenic
TCTCAAACTTGATAAAACAA+AGG 0.586653 3_4:-79710873 Msa0526000:CDS
TATAGAAGCCGAATGGTGAA+AGG 0.589342 3_4:-79711169 Msa0526000:intron
AGAGAAGCGATTTGGGAACA+AGG 0.589791 3_4:+79712281 None:intergenic
AATCGGAATCGGAGGAGTAG+CGG 0.592060 3_4:+79712109 None:intergenic
TAAGGGAGTCCTTGTTGTCG+CGG 0.602516 3_4:+79712187 None:intergenic
TGCGGTGGTGACGCTTGCGA+CGG 0.609611 3_4:+79712220 None:intergenic
GAGAAGCGATTTGGGAACAA+GGG 0.611184 3_4:+79712282 None:intergenic
AGAATAAGAATCGGAATCGG+AGG 0.613396 3_4:+79712101 None:intergenic
CCTGGATGAATCAGAGAGGG+AGG 0.622668 3_4:+79712074 None:intergenic
TAACCTTGGAAAGCTGCACA+GGG 0.626974 3_4:+79711138 None:intergenic
TAAAACAAAGGAAGATAAGG+AGG 0.629537 3_4:-79710861 Msa0526000:CDS
AGGTCAAGTTTACAAGGCAT+AGG 0.639197 3_4:+79710306 None:intergenic
ATGTTGAACAAACTTGATTG+CGG 0.643868 3_4:+79710632 None:intergenic
CTACCTGGATGAATCAGAGA+GGG 0.654886 3_4:+79712071 None:intergenic
TTCAACAAGGATCCTAGAGT+CGG 0.663125 3_4:+79710341 None:intergenic
AGCCCAGAATAACAATAGAG+GGG 0.663633 3_4:+79710473 None:intergenic
TAAACTCAATGAATCCGGCA+AGG 0.664115 3_4:+79710536 None:intergenic
TAAGCAGACATATAGAGGAG+AGG 0.664169 3_4:+79710270 None:intergenic
CCTTGTTGTCGCGGTCTCGG+CGG 0.689888 3_4:+79712196 None:intergenic
AAGCAATCTACAATTTAGAG+GGG 0.694026 3_4:-79710690 Msa0526000:three_prime_UTR
GCATACCATATGTTTCAACA+AGG 0.715480 3_4:+79710328 None:intergenic
CCTACCTGGATGAATCAGAG+AGG 0.719578 3_4:+79712070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATTAATTTAATCTA+TGG - chr3_4:79710530-79710549 Msa0526000:three_prime_UTR 10.0%
!! AAAATTAAGAAAATATCTAT+CGG + chr3_4:79712277-79712296 None:intergenic 10.0%
!! TATGTTATTAATTTAATCTA+TGG - chr3_4:79710530-79710549 Msa0526000:three_prime_UTR 10.0%
!! AAAATTAAGAAAATATCTAT+CGG + chr3_4:79712277-79712296 None:intergenic 10.0%
!!! ACATCTTGAAAATATTTTAT+TGG - chr3_4:79710958-79710977 Msa0526000:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG + chr3_4:79711130-79711149 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG - chr3_4:79711129-79711148 Msa0526000:intron 15.0%
!!! ACATCTTGAAAATATTTTAT+TGG - chr3_4:79710958-79710977 Msa0526000:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG + chr3_4:79711130-79711149 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG - chr3_4:79711129-79711148 Msa0526000:intron 15.0%
!! AAGAAAAAAGAAGAAGATAT+TGG - chr3_4:79710080-79710099 Msa0526000:three_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG + chr3_4:79710380-79710399 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG - chr3_4:79710489-79710508 Msa0526000:three_prime_UTR 20.0%
!!! ATTTAATCTATGGATTAATC+TGG - chr3_4:79710540-79710559 Msa0526000:three_prime_UTR 20.0%
!! AAGATGTAATACATTTATAG+AGG + chr3_4:79710945-79710964 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG - chr3_4:79711006-79711025 Msa0526000:CDS 20.0%
!! ACTAAAACTTGTATAATAGA+GGG - chr3_4:79711007-79711026 Msa0526000:CDS 20.0%
!! TCATAAGAAAAAAATAACCT+TGG + chr3_4:79711301-79711320 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG + chr3_4:79711932-79711951 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG - chr3_4:79712003-79712022 Msa0526000:intron 20.0%
!! TTACATATTCTGATACATAA+GGG - chr3_4:79712004-79712023 Msa0526000:intron 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG + chr3_4:79712329-79712348 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG + chr3_4:79712330-79712349 None:intergenic 20.0%
!! AAGAAAAAAGAAGAAGATAT+TGG - chr3_4:79710080-79710099 Msa0526000:three_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG + chr3_4:79710380-79710399 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG - chr3_4:79710489-79710508 Msa0526000:three_prime_UTR 20.0%
!!! ATTTAATCTATGGATTAATC+TGG - chr3_4:79710540-79710559 Msa0526000:three_prime_UTR 20.0%
!! AAGATGTAATACATTTATAG+AGG + chr3_4:79710945-79710964 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG - chr3_4:79711006-79711025 Msa0526000:CDS 20.0%
!! ACTAAAACTTGTATAATAGA+GGG - chr3_4:79711007-79711026 Msa0526000:CDS 20.0%
!! TCATAAGAAAAAAATAACCT+TGG + chr3_4:79711301-79711320 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG + chr3_4:79711932-79711951 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG - chr3_4:79712003-79712022 Msa0526000:intron 20.0%
!! TTACATATTCTGATACATAA+GGG - chr3_4:79712004-79712023 Msa0526000:intron 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG + chr3_4:79712329-79712348 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG + chr3_4:79712330-79712349 None:intergenic 20.0%
! AAAAAAGAAGAAGATATTGG+TGG - chr3_4:79710083-79710102 Msa0526000:three_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG - chr3_4:79710084-79710103 Msa0526000:three_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG - chr3_4:79710455-79710474 Msa0526000:three_prime_UTR 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG - chr3_4:79710497-79710516 Msa0526000:three_prime_UTR 25.0%
! AAAGGAAGATGTAAGATATA+TGG + chr3_4:79710736-79710755 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG + chr3_4:79710861-79710880 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG - chr3_4:79711549-79711568 Msa0526000:intron 25.0%
! TGATAAAACAAAGGAAGATA+AGG - chr3_4:79711558-79711577 Msa0526000:intron 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG - chr3_4:79712326-79712345 Msa0526000:five_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG - chr3_4:79712347-79712366 Msa0526000:five_prime_UTR 25.0%
! AAAAAAGAAGAAGATATTGG+TGG - chr3_4:79710083-79710102 Msa0526000:three_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG - chr3_4:79710084-79710103 Msa0526000:three_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG - chr3_4:79710455-79710474 Msa0526000:three_prime_UTR 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG - chr3_4:79710497-79710516 Msa0526000:three_prime_UTR 25.0%
! AAAGGAAGATGTAAGATATA+TGG + chr3_4:79710736-79710755 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG + chr3_4:79710861-79710880 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG - chr3_4:79711549-79711568 Msa0526000:intron 25.0%
! TGATAAAACAAAGGAAGATA+AGG - chr3_4:79711558-79711577 Msa0526000:intron 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG - chr3_4:79712326-79712345 Msa0526000:five_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG - chr3_4:79712347-79712366 Msa0526000:five_prime_UTR 25.0%
AGTGAGATTTGGATTTCTTT+CGG + chr3_4:79710265-79710284 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG + chr3_4:79710327-79710346 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG - chr3_4:79710502-79710521 Msa0526000:three_prime_UTR 30.0%
! TTATGACGATGACTTTTACT+TGG + chr3_4:79710783-79710802 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG - chr3_4:79710784-79710803 Msa0526000:three_prime_UTR 30.0%
TTTAAACAAGCCAATATGGT+AGG + chr3_4:79710857-79710876 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG + chr3_4:79710929-79710948 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG + chr3_4:79710930-79710949 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG + chr3_4:79710999-79711018 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG + chr3_4:79711070-79711089 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG - chr3_4:79711073-79711092 Msa0526000:intron 30.0%
TATATAAAACTCCCATTTCC+AGG + chr3_4:79711237-79711256 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG - chr3_4:79711246-79711265 Msa0526000:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG - chr3_4:79711383-79711402 Msa0526000:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG - chr3_4:79711384-79711403 Msa0526000:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG - chr3_4:79711469-79711488 Msa0526000:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG - chr3_4:79711470-79711489 Msa0526000:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG - chr3_4:79711561-79711580 Msa0526000:intron 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG - chr3_4:79711644-79711663 Msa0526000:CDS 30.0%
! AACAACGAACCAATTTTACT+TGG - chr3_4:79711679-79711698 Msa0526000:intron 30.0%
! ACAACGAACCAATTTTACTT+GGG - chr3_4:79711680-79711699 Msa0526000:intron 30.0%
TCAAGCAATCTACAATTTAG+AGG - chr3_4:79711730-79711749 Msa0526000:intron 30.0%
CAAGCAATCTACAATTTAGA+GGG - chr3_4:79711731-79711750 Msa0526000:intron 30.0%
AAGCAATCTACAATTTAGAG+GGG - chr3_4:79711732-79711751 Msa0526000:intron 30.0%
ATGTTGAACAAACTTGATTG+CGG + chr3_4:79711793-79711812 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG + chr3_4:79711839-79711858 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG + chr3_4:79712212-79712231 None:intergenic 30.0%
AGTGAGATTTGGATTTCTTT+CGG + chr3_4:79710265-79710284 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG + chr3_4:79710327-79710346 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG - chr3_4:79710502-79710521 Msa0526000:three_prime_UTR 30.0%
! TTATGACGATGACTTTTACT+TGG + chr3_4:79710783-79710802 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG - chr3_4:79710784-79710803 Msa0526000:three_prime_UTR 30.0%
TTTAAACAAGCCAATATGGT+AGG + chr3_4:79710857-79710876 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG + chr3_4:79710929-79710948 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG + chr3_4:79710930-79710949 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG + chr3_4:79710999-79711018 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG + chr3_4:79711070-79711089 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG - chr3_4:79711073-79711092 Msa0526000:intron 30.0%
TATATAAAACTCCCATTTCC+AGG + chr3_4:79711237-79711256 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG - chr3_4:79711246-79711265 Msa0526000:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG - chr3_4:79711383-79711402 Msa0526000:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG - chr3_4:79711384-79711403 Msa0526000:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG - chr3_4:79711469-79711488 Msa0526000:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG - chr3_4:79711470-79711489 Msa0526000:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG - chr3_4:79711561-79711580 Msa0526000:intron 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG - chr3_4:79711644-79711663 Msa0526000:CDS 30.0%
! AACAACGAACCAATTTTACT+TGG - chr3_4:79711679-79711698 Msa0526000:intron 30.0%
! ACAACGAACCAATTTTACTT+GGG - chr3_4:79711680-79711699 Msa0526000:intron 30.0%
TCAAGCAATCTACAATTTAG+AGG - chr3_4:79711730-79711749 Msa0526000:intron 30.0%
CAAGCAATCTACAATTTAGA+GGG - chr3_4:79711731-79711750 Msa0526000:intron 30.0%
AAGCAATCTACAATTTAGAG+GGG - chr3_4:79711732-79711751 Msa0526000:intron 30.0%
ATGTTGAACAAACTTGATTG+CGG + chr3_4:79711793-79711812 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG + chr3_4:79711839-79711858 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG + chr3_4:79712212-79712231 None:intergenic 30.0%
GGATTTCTTTCGGATCTTAA+GGG + chr3_4:79710255-79710274 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG + chr3_4:79710256-79710275 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG + chr3_4:79710276-79710295 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG + chr3_4:79710333-79710352 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG + chr3_4:79710369-79710388 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG - chr3_4:79710665-79710684 Msa0526000:three_prime_UTR 35.0%
TTCCTTTCCTTGCTAGAATA+AGG - chr3_4:79710749-79710768 Msa0526000:three_prime_UTR 35.0%
TTCCTTATTCTAGCAAGGAA+AGG + chr3_4:79710754-79710773 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG - chr3_4:79710755-79710774 Msa0526000:three_prime_UTR 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG + chr3_4:79710759-79710778 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG + chr3_4:79710928-79710947 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG + chr3_4:79711068-79711087 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG + chr3_4:79711069-79711088 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG + chr3_4:79711071-79711090 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG + chr3_4:79711105-79711124 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG - chr3_4:79711143-79711162 Msa0526000:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG - chr3_4:79711625-79711644 Msa0526000:CDS 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG - chr3_4:79711643-79711662 Msa0526000:CDS 35.0%
ATTACGCACCCAAGTAAAAT+TGG + chr3_4:79711691-79711710 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG - chr3_4:79711736-79711755 Msa0526000:intron 35.0%
! TCAAGTTTGTTCAACATGTG+TGG - chr3_4:79711796-79711815 Msa0526000:CDS 35.0%
! TTTCCCCTCTATTGTTATTC+TGG - chr3_4:79711946-79711965 Msa0526000:intron 35.0%
! TTCCCCTCTATTGTTATTCT+GGG - chr3_4:79711947-79711966 Msa0526000:intron 35.0%
AGGATCCTTGTTGAAACATA+TGG - chr3_4:79712089-79712108 Msa0526000:CDS 35.0%
GCATACCATATGTTTCAACA+AGG + chr3_4:79712097-79712116 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG + chr3_4:79712125-79712144 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG - chr3_4:79712124-79712143 Msa0526000:CDS 35.0%
! AGCATTGAATGCATAAGCTA+AGG + chr3_4:79712232-79712251 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG - chr3_4:79712232-79712251 Msa0526000:CDS 35.0%
GGATTTCTTTCGGATCTTAA+GGG + chr3_4:79710255-79710274 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG + chr3_4:79710256-79710275 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG + chr3_4:79710276-79710295 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG + chr3_4:79710333-79710352 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG + chr3_4:79710369-79710388 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG - chr3_4:79710665-79710684 Msa0526000:three_prime_UTR 35.0%
TTCCTTTCCTTGCTAGAATA+AGG - chr3_4:79710749-79710768 Msa0526000:three_prime_UTR 35.0%
TTCCTTATTCTAGCAAGGAA+AGG + chr3_4:79710754-79710773 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG - chr3_4:79710755-79710774 Msa0526000:three_prime_UTR 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG + chr3_4:79710759-79710778 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG + chr3_4:79710928-79710947 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG + chr3_4:79711068-79711087 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG + chr3_4:79711069-79711088 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG + chr3_4:79711071-79711090 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG + chr3_4:79711105-79711124 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG - chr3_4:79711143-79711162 Msa0526000:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG - chr3_4:79711625-79711644 Msa0526000:CDS 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG - chr3_4:79711643-79711662 Msa0526000:CDS 35.0%
ATTACGCACCCAAGTAAAAT+TGG + chr3_4:79711691-79711710 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG - chr3_4:79711736-79711755 Msa0526000:intron 35.0%
! TCAAGTTTGTTCAACATGTG+TGG - chr3_4:79711796-79711815 Msa0526000:CDS 35.0%
! TTTCCCCTCTATTGTTATTC+TGG - chr3_4:79711946-79711965 Msa0526000:intron 35.0%
! TTCCCCTCTATTGTTATTCT+GGG - chr3_4:79711947-79711966 Msa0526000:intron 35.0%
AGGATCCTTGTTGAAACATA+TGG - chr3_4:79712089-79712108 Msa0526000:CDS 35.0%
GCATACCATATGTTTCAACA+AGG + chr3_4:79712097-79712116 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG + chr3_4:79712125-79712144 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG - chr3_4:79712124-79712143 Msa0526000:CDS 35.0%
! AGCATTGAATGCATAAGCTA+AGG + chr3_4:79712232-79712251 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG - chr3_4:79712232-79712251 Msa0526000:CDS 35.0%
! AGAAGAAGATATTGGTGGGT+AGG - chr3_4:79710088-79710107 Msa0526000:three_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG - chr3_4:79710089-79710108 Msa0526000:three_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG - chr3_4:79710090-79710109 Msa0526000:three_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG + chr3_4:79710119-79710138 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG + chr3_4:79710127-79710146 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG + chr3_4:79710128-79710147 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG + chr3_4:79710151-79710170 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG + chr3_4:79710324-79710343 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG - chr3_4:79710505-79710524 Msa0526000:three_prime_UTR 40.0%
! AACCAAAGAAGGTGATTTGC+TGG - chr3_4:79710676-79710695 Msa0526000:three_prime_UTR 40.0%
TACCAGCAAATCACCTTCTT+TGG + chr3_4:79710681-79710700 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG + chr3_4:79710847-79710866 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG + chr3_4:79711067-79711086 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG - chr3_4:79711201-79711220 Msa0526000:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG - chr3_4:79711205-79711224 Msa0526000:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG - chr3_4:79711206-79711225 Msa0526000:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG - chr3_4:79711253-79711272 Msa0526000:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG + chr3_4:79711441-79711460 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG + chr3_4:79711587-79711606 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG - chr3_4:79711630-79711649 Msa0526000:CDS 40.0%
CAATCTACAATTTAGAGGGG+TGG - chr3_4:79711735-79711754 Msa0526000:intron 40.0%
ATCTACAATTTAGAGGGGTG+GGG - chr3_4:79711737-79711756 Msa0526000:intron 40.0%
CATGTGTGGTTTACAGTCAA+TGG - chr3_4:79711810-79711829 Msa0526000:CDS 40.0%
GTCAATGGTTTCCTCTATTG+TGG - chr3_4:79711825-79711844 Msa0526000:intron 40.0%
TAAACTCAATGAATCCGGCA+AGG + chr3_4:79711889-79711908 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG + chr3_4:79711894-79711913 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG - chr3_4:79711891-79711910 Msa0526000:intron 40.0%
AGCCCAGAATAACAATAGAG+GGG + chr3_4:79711952-79711971 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG + chr3_4:79711953-79711972 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG + chr3_4:79711954-79711973 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG + chr3_4:79712084-79712103 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG + chr3_4:79712119-79712138 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG - chr3_4:79712119-79712138 Msa0526000:CDS 40.0%
TAAGCAGACATATAGAGGAG+AGG + chr3_4:79712155-79712174 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG - chr3_4:79712169-79712188 Msa0526000:CDS 40.0%
! GCTTACGTCGAAACGTTTTT+GGG - chr3_4:79712170-79712189 Msa0526000:CDS 40.0%
! AGAAGAAGATATTGGTGGGT+AGG - chr3_4:79710088-79710107 Msa0526000:three_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG - chr3_4:79710089-79710108 Msa0526000:three_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG - chr3_4:79710090-79710109 Msa0526000:three_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG + chr3_4:79710119-79710138 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG + chr3_4:79710127-79710146 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG + chr3_4:79710128-79710147 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG + chr3_4:79710151-79710170 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG + chr3_4:79710324-79710343 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG - chr3_4:79710505-79710524 Msa0526000:three_prime_UTR 40.0%
! AACCAAAGAAGGTGATTTGC+TGG - chr3_4:79710676-79710695 Msa0526000:three_prime_UTR 40.0%
TACCAGCAAATCACCTTCTT+TGG + chr3_4:79710681-79710700 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG + chr3_4:79710847-79710866 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG + chr3_4:79711067-79711086 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG - chr3_4:79711201-79711220 Msa0526000:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG - chr3_4:79711205-79711224 Msa0526000:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG - chr3_4:79711206-79711225 Msa0526000:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG - chr3_4:79711253-79711272 Msa0526000:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG + chr3_4:79711441-79711460 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG + chr3_4:79711587-79711606 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG - chr3_4:79711630-79711649 Msa0526000:CDS 40.0%
CAATCTACAATTTAGAGGGG+TGG - chr3_4:79711735-79711754 Msa0526000:intron 40.0%
ATCTACAATTTAGAGGGGTG+GGG - chr3_4:79711737-79711756 Msa0526000:intron 40.0%
CATGTGTGGTTTACAGTCAA+TGG - chr3_4:79711810-79711829 Msa0526000:CDS 40.0%
GTCAATGGTTTCCTCTATTG+TGG - chr3_4:79711825-79711844 Msa0526000:intron 40.0%
TAAACTCAATGAATCCGGCA+AGG + chr3_4:79711889-79711908 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG + chr3_4:79711894-79711913 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG - chr3_4:79711891-79711910 Msa0526000:intron 40.0%
AGCCCAGAATAACAATAGAG+GGG + chr3_4:79711952-79711971 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG + chr3_4:79711953-79711972 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG + chr3_4:79711954-79711973 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG + chr3_4:79712084-79712103 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG + chr3_4:79712119-79712138 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG - chr3_4:79712119-79712138 Msa0526000:CDS 40.0%
TAAGCAGACATATAGAGGAG+AGG + chr3_4:79712155-79712174 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG - chr3_4:79712169-79712188 Msa0526000:CDS 40.0%
! GCTTACGTCGAAACGTTTTT+GGG - chr3_4:79712170-79712189 Msa0526000:CDS 40.0%
CAAGGGTTTGTCTTCGATTG+GGG + chr3_4:79710126-79710145 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG + chr3_4:79710143-79710162 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG + chr3_4:79710144-79710163 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG - chr3_4:79710148-79710167 Msa0526000:three_prime_UTR 45.0%
GCCATATGAGAGAAGCGATT+TGG + chr3_4:79710152-79710171 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG + chr3_4:79710177-79710196 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG + chr3_4:79710354-79710373 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG - chr3_4:79710806-79710825 Msa0526000:exon 45.0%
AAGCACAGCGTAAAAGAGGT+AGG - chr3_4:79710810-79710829 Msa0526000:CDS 45.0%
CCGTACATTGCCTACCATAT+TGG - chr3_4:79710844-79710863 Msa0526000:CDS 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG - chr3_4:79711149-79711168 Msa0526000:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG - chr3_4:79711157-79711176 Msa0526000:CDS 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG - chr3_4:79711216-79711235 Msa0526000:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG - chr3_4:79711223-79711242 Msa0526000:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG + chr3_4:79711287-79711306 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG + chr3_4:79711288-79711307 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG - chr3_4:79711401-79711420 Msa0526000:intron 45.0%
ATGAATCCGGCAAGGTCAAA+AGG + chr3_4:79711881-79711900 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG + chr3_4:79712160-79712179 None:intergenic 45.0%
CAAGGGTTTGTCTTCGATTG+GGG + chr3_4:79710126-79710145 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG + chr3_4:79710143-79710162 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG + chr3_4:79710144-79710163 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG - chr3_4:79710148-79710167 Msa0526000:three_prime_UTR 45.0%
GCCATATGAGAGAAGCGATT+TGG + chr3_4:79710152-79710171 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG + chr3_4:79710177-79710196 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG + chr3_4:79710354-79710373 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG - chr3_4:79710806-79710825 Msa0526000:exon 45.0%
AAGCACAGCGTAAAAGAGGT+AGG - chr3_4:79710810-79710829 Msa0526000:CDS 45.0%
CCGTACATTGCCTACCATAT+TGG - chr3_4:79710844-79710863 Msa0526000:CDS 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG - chr3_4:79711149-79711168 Msa0526000:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG - chr3_4:79711157-79711176 Msa0526000:CDS 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG - chr3_4:79711216-79711235 Msa0526000:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG - chr3_4:79711223-79711242 Msa0526000:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG + chr3_4:79711287-79711306 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG + chr3_4:79711288-79711307 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG - chr3_4:79711401-79711420 Msa0526000:intron 45.0%
ATGAATCCGGCAAGGTCAAA+AGG + chr3_4:79711881-79711900 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG + chr3_4:79712160-79712179 None:intergenic 45.0%
! TAAGGGAGTCCTTGTTGTCG+CGG + chr3_4:79710238-79710257 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG + chr3_4:79710316-79710335 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG + chr3_4:79710355-79710374 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG - chr3_4:79710352-79710371 Msa0526000:three_prime_UTR 50.0%
CATACATGAAGTTGGGGGGA+GGG + chr3_4:79711063-79711082 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG + chr3_4:79711064-79711083 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG - chr3_4:79711187-79711206 Msa0526000:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG - chr3_4:79711222-79711241 Msa0526000:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG + chr3_4:79711264-79711283 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG - chr3_4:79711872-79711891 Msa0526000:intron 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG - chr3_4:79712069-79712088 Msa0526000:intron 50.0%
AGGATCCTAGAGTCGGTACT+TGG + chr3_4:79712077-79712096 None:intergenic 50.0%
! TAAGGGAGTCCTTGTTGTCG+CGG + chr3_4:79710238-79710257 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG + chr3_4:79710316-79710335 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG + chr3_4:79710355-79710374 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG - chr3_4:79710352-79710371 Msa0526000:three_prime_UTR 50.0%
CATACATGAAGTTGGGGGGA+GGG + chr3_4:79711063-79711082 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG + chr3_4:79711064-79711083 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG - chr3_4:79711187-79711206 Msa0526000:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG - chr3_4:79711222-79711241 Msa0526000:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG + chr3_4:79711264-79711283 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG - chr3_4:79711872-79711891 Msa0526000:intron 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG - chr3_4:79712069-79712088 Msa0526000:intron 50.0%
AGGATCCTAGAGTCGGTACT+TGG + chr3_4:79712077-79712096 None:intergenic 50.0%
! AGTCCTTGTTGTCGCGGTCT+CGG + chr3_4:79710232-79710251 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG + chr3_4:79710351-79710370 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG - chr3_4:79710348-79710367 Msa0526000:three_prime_UTR 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG - chr3_4:79711167-79711186 Msa0526000:CDS 55.0%
CAATTTAGAGGGGTGGGGTG+CGG - chr3_4:79711742-79711761 Msa0526000:intron 55.0%
GGAGAGGTTGCTCCATTCCA+AGG + chr3_4:79712139-79712158 None:intergenic 55.0%
! AGTCCTTGTTGTCGCGGTCT+CGG + chr3_4:79710232-79710251 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG + chr3_4:79710351-79710370 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG - chr3_4:79710348-79710367 Msa0526000:three_prime_UTR 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG - chr3_4:79711167-79711186 Msa0526000:CDS 55.0%
CAATTTAGAGGGGTGGGGTG+CGG - chr3_4:79711742-79711761 Msa0526000:intron 55.0%
GGAGAGGTTGCTCCATTCCA+AGG + chr3_4:79712139-79712158 None:intergenic 55.0%
CAGCCCTGTGCAGCTTTCCA+AGG - chr3_4:79711281-79711300 Msa0526000:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG - chr3_4:79711424-79711443 Msa0526000:intron 60.0%
CAGTGCCGTATCGGGCAAGA+AGG - chr3_4:79711433-79711452 Msa0526000:intron 60.0%
CAGCCCTGTGCAGCTTTCCA+AGG - chr3_4:79711281-79711300 Msa0526000:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG - chr3_4:79711424-79711443 Msa0526000:intron 60.0%
CAGTGCCGTATCGGGCAAGA+AGG - chr3_4:79711433-79711452 Msa0526000:intron 60.0%
GTGACGCTTGCGACGGTGAG+AGG + chr3_4:79710198-79710217 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG + chr3_4:79710205-79710224 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG + chr3_4:79710229-79710248 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG - chr3_4:79711425-79711444 Msa0526000:intron 65.0%
TGCCCGATACGGCACTGCGA+CGG + chr3_4:79711430-79711449 None:intergenic 65.0%
GTGACGCTTGCGACGGTGAG+AGG + chr3_4:79710198-79710217 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG + chr3_4:79710205-79710224 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG + chr3_4:79710229-79710248 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG - chr3_4:79711425-79711444 Msa0526000:intron 65.0%
TGCCCGATACGGCACTGCGA+CGG + chr3_4:79711430-79711449 None:intergenic 65.0%
CCGCCGAGACCGCGACAACA+AGG - chr3_4:79710226-79710245 Msa0526000:three_prime_UTR 70.0%
CCGCCGAGACCGCGACAACA+AGG - chr3_4:79710226-79710245 Msa0526000:three_prime_UTR 70.0%
TGTCGCGGTCTCGGCGGCTG+CGG + chr3_4:79710223-79710242 None:intergenic 75.0%
TGTCGCGGTCTCGGCGGCTG+CGG + chr3_4:79710223-79710242 None:intergenic 75.0%
! CGCGGTCTCGGCGGCTGCGG+TGG + chr3_4:79710220-79710239 None:intergenic 85.0%
! CGCGGTCTCGGCGGCTGCGG+TGG + chr3_4:79710220-79710239 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79710069 79712375 79710069 ID=Msa0526000;Name=Msa0526000
chr3_4 mRNA 79710069 79712375 79710069 ID=Msa0526000-mRNA-1;Parent=Msa0526000;Name=Msa0526000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=98|0.66|0.85|1|1|1|7|739|203
chr3_4 exon 79710069 79710900 79710069 ID=Msa0526000-mRNA-1:exon:23911;Parent=Msa0526000-mRNA-1
chr3_4 exon 79710990 79711046 79710990 ID=Msa0526000-mRNA-1:exon:23910;Parent=Msa0526000-mRNA-1
chr3_4 exon 79711142 79711186 79711142 ID=Msa0526000-mRNA-1:exon:23909;Parent=Msa0526000-mRNA-1
chr3_4 exon 79711274 79711345 79711274 ID=Msa0526000-mRNA-1:exon:23908;Parent=Msa0526000-mRNA-1
chr3_4 exon 79711617 79711679 79711617 ID=Msa0526000-mRNA-1:exon:23907;Parent=Msa0526000-mRNA-1
chr3_4 exon 79711758 79711836 79711758 ID=Msa0526000-mRNA-1:exon:23906;Parent=Msa0526000-mRNA-1
chr3_4 exon 79712075 79712375 79712075 ID=Msa0526000-mRNA-1:exon:23905;Parent=Msa0526000-mRNA-1
chr3_4 five_prime_UTR 79712278 79712375 79712278 ID=Msa0526000-mRNA-1:five_prime_utr;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79712075 79712277 79712075 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79711758 79711836 79711758 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79711617 79711679 79711617 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79711274 79711345 79711274 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79711142 79711186 79711142 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79710990 79711046 79710990 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 CDS 79710808 79710900 79710808 ID=Msa0526000-mRNA-1:cds;Parent=Msa0526000-mRNA-1
chr3_4 three_prime_UTR 79710069 79710807 79710069 ID=Msa0526000-mRNA-1:three_prime_utr;Parent=Msa0526000-mRNA-1
Gene Sequence

>Msa0526000

ATGGCGTCCTCTCTCTCTTCTGATTCTTCCTCTCACCGTCGCAAGCGTCACCACCGCAGCCGCCGAGACCGCGACAACAAGGACTCCCTTAAGATCCGAAAGAAATCCAAATCTCACTCTCACACAAAACGACGTCGCAAACATCACCGCTACTCCTCCGATTCCGATTCTTATTCTTCTTCCTCCCTCTCTGATTCATCCAGAAGTGAGAGTTCTTCTGATAGTGAGCATGAAACATCTCATCGTTCAAAGAAGCATAAAAAGAGCGATAAACCAAAGAAGAATAAGGAAAAGGAGCCAAGTAAAAGTCATCGTCATAAACGGCATAAGCACAGCGTAAAAGAGATTCCAGTCTTAGATGCTTATGATACTTCCTTCTTTATTTTATTATGTCTTGGCTCTTTGAAATTGGAGCTGAAGCCGAATGGTGAAAGGAGCAGCAGCCCTGTGCAGCTTTCCAAGTTTTTAGGGCGCAACAAAGATGATGGTGTCCGTCGCAGTGCCGTATCGGGCAAGAAGATTCTTCTCAAACTTGATAAAACAAAGGAAGATAAGGAGGCCGAGAGCAAGAGAAATGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAG
Protein sequence

>Msa0526000

MASSLSSDSSSHRRKRHHRSRRDRDNKDSLKIRKKSKSHSHTKRRRKHHRYSSDSDSYSSSSLSDSSRSESSSDSEHETSHRSKKHKKSDKPKKNKEKEPSKSHRHKRHKHSVKEIPVLDAYDTSFFILLCLGSLKLELKPNGERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNELLNFLNASFD*