AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1304960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304960 MtrunA17_Chr7g0272161 84.653 202 6 1 2 203 5 181 6.07e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304960 AT5G27860.2 59.836 122 25 1 82 203 80 177 1.19e-29 108
Msa1304960 AT5G27860.1 59.836 122 25 1 82 203 80 177 1.19e-29 108

Find 100 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCCTCTATTGTTATTC+TGG 0.085496 8_3:+68239342 Msa1304960:three_prime_UTR
ATGTCTTGGCTCTTTGAAAT+TGG 0.244734 8_3:+68238539 Msa1304960:CDS
ATTACGCACCCAAGTAAAAT+TGG 0.260745 8_3:-68239084 None:intergenic
TACCAGCAAATCACCTTCTT+TGG 0.265893 8_3:-68238074 None:intergenic
TTCCCCTCTATTGTTATTCT+GGG 0.318071 8_3:+68239343 Msa1304960:three_prime_UTR
TGGATTTCTTTCGGATCTTA+AGG 0.321862 8_3:-68237649 None:intergenic
GCCATATGAGAGAAGCGATT+TGG 0.331117 8_3:-68237545 None:intergenic
GGTTGTAAATACAATTGATT+AGG 0.345889 8_3:+68239743 Msa1304960:three_prime_UTR
AGTGAGATTTGGATTTCTTT+CGG 0.354212 8_3:-68237658 None:intergenic
CATGTGTGGTTTACAGTCAA+TGG 0.371648 8_3:+68239206 Msa1304960:three_prime_UTR
CCATATGAGAGAAGCGATTT+GGG 0.377462 8_3:-68237544 None:intergenic
CTGCTGCTCCTTTCACCATT+CGG 0.378039 8_3:-68238657 None:intergenic
TAGCTTATGCATTCAATGCT+TGG 0.383851 8_3:+68239628 Msa1304960:three_prime_UTR
CAGTTCATTTCTCTTGCTCT+CGG 0.399682 8_3:-68238980 None:intergenic
CCCAAATCGCTTCTCTCATA+TGG 0.400613 8_3:+68237544 Msa1304960:exon
GGATTTCTTTCGGATCTTAA+GGG 0.407750 8_3:-68237648 None:intergenic
TCAAGCAATCTACAATTTAG+AGG 0.408247 8_3:+68239126 Msa1304960:three_prime_UTR
ATTACATATTCTGATACATA+AGG 0.409100 8_3:+68239399 Msa1304960:three_prime_UTR
TGGCTCTTTGAAATTGGAGC+TGG 0.410762 8_3:+68238545 Msa1304960:CDS
AGGATCCTTGTTGAAACATA+TGG 0.412458 8_3:+68239485 Msa1304960:three_prime_UTR
GAAGGTATGGATTTGTTAAG+AGG 0.413335 8_3:+68239039 Msa1304960:three_prime_UTR
AGTCCTTGTTGTCGCGGTCT+CGG 0.413539 8_3:-68237625 None:intergenic
AGGTTGTTAAAAGTGTCTTT+AGG 0.416347 8_3:-68239605 None:intergenic
ACAAGGGTTTGTCTTCGATT+GGG 0.419122 8_3:-68237520 None:intergenic
ATAACCTTGGAAAGCTGCAC+AGG 0.423980 8_3:-68238681 None:intergenic
AACAAGGGTTTGTCTTCGAT+TGG 0.434734 8_3:-68237521 None:intergenic
GAAGAAGATATTGGTGGGTA+GGG 0.439694 8_3:+68237485 Msa1304960:five_prime_UTR
GTCCGTCGCAGTGCCGTATC+GGG 0.439911 8_3:+68238821 Msa1304960:CDS
TGTCCGTCGCAGTGCCGTAT+CGG 0.444932 8_3:+68238820 Msa1304960:CDS
GTCAATGGTTTCCTCTATTG+TGG 0.447734 8_3:+68239221 Msa1304960:three_prime_UTR
TTGTCTTCGATTGGGGAAAT+CGG 0.448002 8_3:-68237512 None:intergenic
CGCGGTCTCGGCGGCTGCGG+TGG 0.449012 8_3:-68237613 None:intergenic
TTACATATTCTGATACATAA+GGG 0.451756 8_3:+68239400 Msa1304960:three_prime_UTR
GTAAAAGTCATCGTCATAAA+CGG 0.452807 8_3:+68238180 Msa1304960:CDS
AATCTACAATTTAGAGGGGT+GGG 0.464409 8_3:+68239132 Msa1304960:three_prime_UTR
TGATTAGCACTGAGAAGGTA+TGG 0.466409 8_3:+68239026 Msa1304960:exon
GGAGGAAGAAGAATAAGAAT+CGG 0.483872 8_3:-68237726 None:intergenic
ATGAATCCGGCAAGGTCAAA+AGG 0.493340 8_3:-68239274 None:intergenic
CAATTTAGAGGGGTGGGGTG+CGG 0.494733 8_3:+68239138 Msa1304960:three_prime_UTR
CAGCCCTGTGCAGCTTTCCA+AGG 0.494864 8_3:+68238677 Msa1304960:CDS
TTAGGGCGCAACAAAGATGA+TGG 0.501533 8_3:+68238797 Msa1304960:CDS
CCGACTAAACTCAATGAATC+CGG 0.507018 8_3:-68239287 None:intergenic
CATAACAAAATCCACAATAG+AGG 0.507467 8_3:-68239232 None:intergenic
TCCTTGCTAGAATAAGGAAA+AGG 0.507505 8_3:+68238151 Msa1304960:intron
CAAGGGTTTGTCTTCGATTG+GGG 0.509935 8_3:-68237519 None:intergenic
CCTCCCTCTCTGATTCATCC+AGG 0.511052 8_3:+68237744 Msa1304960:CDS
GTATCATAAGCATCTAAGAC+TGG 0.512199 8_3:-68238498 None:intergenic
CCGGATTCATTGAGTTTAGT+CGG 0.515083 8_3:+68239287 Msa1304960:three_prime_UTR
AGGATCCTAGAGTCGGTACT+TGG 0.515915 8_3:-68239470 None:intergenic
AGAAGAAGATATTGGTGGGT+AGG 0.516525 8_3:+68237484 Msa1304960:five_prime_UTR
AAAGAGCGATAAACCAAAGA+AGG 0.525894 8_3:+68238061 Msa1304960:CDS
TGATAAAACAAAGGAAGATA+AGG 0.526792 8_3:+68238954 Msa1304960:CDS
CCGCCGAGACCGCGACAACA+AGG 0.526959 8_3:+68237622 Msa1304960:CDS
TAATACCTTCTTGCCCGATA+CGG 0.527264 8_3:-68238834 None:intergenic
TGAGCCCAGAATAACAATAG+AGG 0.528765 8_3:-68239347 None:intergenic
TGTCGCGGTCTCGGCGGCTG+CGG 0.529009 8_3:-68237616 None:intergenic
CAAGCAATCTACAATTTAGA+GGG 0.530838 8_3:+68239127 Msa1304960:three_prime_UTR
TTGTGCCAAGTACCGACTCT+AGG 0.532249 8_3:+68239465 Msa1304960:three_prime_UTR
ATTCCAAGGTCAAGTTTACA+AGG 0.535708 8_3:-68239518 None:intergenic
CGACGTAAGCAGACATATAG+AGG 0.535710 8_3:-68239553 None:intergenic
AAGACATAATAAAATAAAGA+AGG 0.536268 8_3:-68238523 None:intergenic
AAGAAGATATTGGTGGGTAG+GGG 0.538456 8_3:+68237486 Msa1304960:five_prime_UTR
AGAAGAATAAGAATCGGAAT+CGG 0.539647 8_3:-68237720 None:intergenic
CAATCTACAATTTAGAGGGG+TGG 0.547206 8_3:+68239131 Msa1304960:three_prime_UTR
TTGTAAACTTGACCTTGGAA+TGG 0.547705 8_3:+68239520 Msa1304960:three_prime_UTR
GAGCCCAGAATAACAATAGA+GGG 0.549145 8_3:-68239346 None:intergenic
AAGGTATGGATTTGTTAAGA+GGG 0.551503 8_3:+68239040 Msa1304960:three_prime_UTR
ATGCCTTGTAAACTTGACCT+TGG 0.556594 8_3:+68239515 Msa1304960:three_prime_UTR
GCATAAGCACAGCGTAAAAG+AGG 0.563006 8_3:+68238202 Msa1304960:CDS
AGCATTGAATGCATAAGCTA+AGG 0.565531 8_3:-68239625 None:intergenic
AAAATTAAGAAAATATCTAT+CGG 0.567636 8_3:-68239670 None:intergenic
CAGTGCCGTATCGGGCAAGA+AGG 0.568115 8_3:+68238829 Msa1304960:CDS
TCAAGTTTGTTCAACATGTG+TGG 0.571411 8_3:+68239192 Msa1304960:three_prime_UTR
GGAAGAATCAGAAGAGAGAG+AGG 0.573784 8_3:-68237570 None:intergenic
GTGACGCTTGCGACGGTGAG+AGG 0.575207 8_3:-68237591 None:intergenic
ATCTACAATTTAGAGGGGTG+GGG 0.575541 8_3:+68239133 Msa1304960:three_prime_UTR
GGAGAGGTTGCTCCATTCCA+AGG 0.575893 8_3:-68239532 None:intergenic
TGCCCGATACGGCACTGCGA+CGG 0.576742 8_3:-68238823 None:intergenic
TCTCAAACTTGATAAAACAA+AGG 0.586653 8_3:+68238945 Msa1304960:CDS
TATAGAAGCCGAATGGTGAA+AGG 0.589342 8_3:+68238649 Msa1304960:intron
AGAGAAGCGATTTGGGAACA+AGG 0.589791 8_3:-68237537 None:intergenic
AATCGGAATCGGAGGAGTAG+CGG 0.592060 8_3:-68237709 None:intergenic
TAAGGGAGTCCTTGTTGTCG+CGG 0.602516 8_3:-68237631 None:intergenic
TGCGGTGGTGACGCTTGCGA+CGG 0.609611 8_3:-68237598 None:intergenic
GAGAAGCGATTTGGGAACAA+GGG 0.611184 8_3:-68237536 None:intergenic
AGAATAAGAATCGGAATCGG+AGG 0.613396 8_3:-68237717 None:intergenic
CCTGGATGAATCAGAGAGGG+AGG 0.622668 8_3:-68237744 None:intergenic
TAACCTTGGAAAGCTGCACA+GGG 0.626974 8_3:-68238680 None:intergenic
TAAAACAAAGGAAGATAAGG+AGG 0.629537 8_3:+68238957 Msa1304960:CDS
AGGTCAAGTTTACAAGGCAT+AGG 0.639197 8_3:-68239512 None:intergenic
ATGTTGAACAAACTTGATTG+CGG 0.643868 8_3:-68239186 None:intergenic
CTACCTGGATGAATCAGAGA+GGG 0.654886 8_3:-68237747 None:intergenic
TTCAACAAGGATCCTAGAGT+CGG 0.663125 8_3:-68239477 None:intergenic
AGCCCAGAATAACAATAGAG+GGG 0.663633 8_3:-68239345 None:intergenic
TAAACTCAATGAATCCGGCA+AGG 0.664115 8_3:-68239282 None:intergenic
TAAGCAGACATATAGAGGAG+AGG 0.664169 8_3:-68239548 None:intergenic
CCTTGTTGTCGCGGTCTCGG+CGG 0.689888 8_3:-68237622 None:intergenic
AAGCAATCTACAATTTAGAG+GGG 0.694026 8_3:+68239128 Msa1304960:three_prime_UTR
GCATACCATATGTTTCAACA+AGG 0.715480 8_3:-68239490 None:intergenic
CCTACCTGGATGAATCAGAG+AGG 0.719578 8_3:-68237748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATTAATTTAATCTA+TGG + chr8_3:68237926-68237945 Msa1304960:intron 10.0%
!! AAAATTAAGAAAATATCTAT+CGG - chr8_3:68239673-68239692 None:intergenic 10.0%
!! TATGTTATTAATTTAATCTA+TGG + chr8_3:68237926-68237945 Msa1304960:intron 10.0%
!! AAAATTAAGAAAATATCTAT+CGG - chr8_3:68239673-68239692 None:intergenic 10.0%
!!! ACATCTTGAAAATATTTTAT+TGG + chr8_3:68238354-68238373 Msa1304960:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG - chr8_3:68238526-68238545 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG + chr8_3:68238525-68238544 Msa1304960:CDS 15.0%
!!! ACATCTTGAAAATATTTTAT+TGG + chr8_3:68238354-68238373 Msa1304960:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG - chr8_3:68238526-68238545 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG + chr8_3:68238525-68238544 Msa1304960:CDS 15.0%
!! AAGAAAAAAGAAGAAGATAT+TGG + chr8_3:68237476-68237495 Msa1304960:five_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG - chr8_3:68237776-68237795 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG + chr8_3:68237885-68237904 Msa1304960:intron 20.0%
!!! ATTTAATCTATGGATTAATC+TGG + chr8_3:68237936-68237955 Msa1304960:intron 20.0%
!! AAGATGTAATACATTTATAG+AGG - chr8_3:68238341-68238360 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG + chr8_3:68238402-68238421 Msa1304960:intron 20.0%
!! ACTAAAACTTGTATAATAGA+GGG + chr8_3:68238403-68238422 Msa1304960:intron 20.0%
!! TCATAAGAAAAAAATAACCT+TGG - chr8_3:68238697-68238716 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG - chr8_3:68239328-68239347 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG + chr8_3:68239399-68239418 Msa1304960:three_prime_UTR 20.0%
!! TTACATATTCTGATACATAA+GGG + chr8_3:68239400-68239419 Msa1304960:three_prime_UTR 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG - chr8_3:68239725-68239744 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG - chr8_3:68239726-68239745 None:intergenic 20.0%
!! AAGAAAAAAGAAGAAGATAT+TGG + chr8_3:68237476-68237495 Msa1304960:five_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG - chr8_3:68237776-68237795 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG + chr8_3:68237885-68237904 Msa1304960:intron 20.0%
!!! ATTTAATCTATGGATTAATC+TGG + chr8_3:68237936-68237955 Msa1304960:intron 20.0%
!! AAGATGTAATACATTTATAG+AGG - chr8_3:68238341-68238360 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG + chr8_3:68238402-68238421 Msa1304960:intron 20.0%
!! ACTAAAACTTGTATAATAGA+GGG + chr8_3:68238403-68238422 Msa1304960:intron 20.0%
!! TCATAAGAAAAAAATAACCT+TGG - chr8_3:68238697-68238716 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG - chr8_3:68239328-68239347 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG + chr8_3:68239399-68239418 Msa1304960:three_prime_UTR 20.0%
!! TTACATATTCTGATACATAA+GGG + chr8_3:68239400-68239419 Msa1304960:three_prime_UTR 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG - chr8_3:68239725-68239744 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG - chr8_3:68239726-68239745 None:intergenic 20.0%
! AAAAAAGAAGAAGATATTGG+TGG + chr8_3:68237479-68237498 Msa1304960:five_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG + chr8_3:68237480-68237499 Msa1304960:five_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG + chr8_3:68237851-68237870 Msa1304960:intron 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG + chr8_3:68237893-68237912 Msa1304960:intron 25.0%
! AAAGGAAGATGTAAGATATA+TGG - chr8_3:68238132-68238151 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG - chr8_3:68238257-68238276 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG + chr8_3:68238945-68238964 Msa1304960:CDS 25.0%
! TGATAAAACAAAGGAAGATA+AGG + chr8_3:68238954-68238973 Msa1304960:CDS 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG + chr8_3:68239722-68239741 Msa1304960:three_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG + chr8_3:68239743-68239762 Msa1304960:three_prime_UTR 25.0%
! AAAAAAGAAGAAGATATTGG+TGG + chr8_3:68237479-68237498 Msa1304960:five_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG + chr8_3:68237480-68237499 Msa1304960:five_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG + chr8_3:68237851-68237870 Msa1304960:intron 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG + chr8_3:68237893-68237912 Msa1304960:intron 25.0%
! AAAGGAAGATGTAAGATATA+TGG - chr8_3:68238132-68238151 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG - chr8_3:68238257-68238276 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG + chr8_3:68238945-68238964 Msa1304960:CDS 25.0%
! TGATAAAACAAAGGAAGATA+AGG + chr8_3:68238954-68238973 Msa1304960:CDS 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG + chr8_3:68239722-68239741 Msa1304960:three_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG + chr8_3:68239743-68239762 Msa1304960:three_prime_UTR 25.0%
AGTGAGATTTGGATTTCTTT+CGG - chr8_3:68237661-68237680 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG - chr8_3:68237723-68237742 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG + chr8_3:68237898-68237917 Msa1304960:intron 30.0%
! TTATGACGATGACTTTTACT+TGG - chr8_3:68238179-68238198 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG + chr8_3:68238180-68238199 Msa1304960:CDS 30.0%
TTTAAACAAGCCAATATGGT+AGG - chr8_3:68238253-68238272 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG - chr8_3:68238325-68238344 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG - chr8_3:68238326-68238345 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG - chr8_3:68238395-68238414 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG - chr8_3:68238466-68238485 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG + chr8_3:68238469-68238488 Msa1304960:intron 30.0%
TATATAAAACTCCCATTTCC+AGG - chr8_3:68238633-68238652 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG + chr8_3:68238642-68238661 Msa1304960:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG + chr8_3:68238779-68238798 Msa1304960:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG + chr8_3:68238780-68238799 Msa1304960:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG + chr8_3:68238865-68238884 Msa1304960:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG + chr8_3:68238866-68238885 Msa1304960:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG + chr8_3:68238957-68238976 Msa1304960:CDS 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG + chr8_3:68239040-68239059 Msa1304960:three_prime_UTR 30.0%
! AACAACGAACCAATTTTACT+TGG + chr8_3:68239075-68239094 Msa1304960:three_prime_UTR 30.0%
! ACAACGAACCAATTTTACTT+GGG + chr8_3:68239076-68239095 Msa1304960:three_prime_UTR 30.0%
TCAAGCAATCTACAATTTAG+AGG + chr8_3:68239126-68239145 Msa1304960:three_prime_UTR 30.0%
CAAGCAATCTACAATTTAGA+GGG + chr8_3:68239127-68239146 Msa1304960:three_prime_UTR 30.0%
AAGCAATCTACAATTTAGAG+GGG + chr8_3:68239128-68239147 Msa1304960:three_prime_UTR 30.0%
ATGTTGAACAAACTTGATTG+CGG - chr8_3:68239189-68239208 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG - chr8_3:68239235-68239254 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG - chr8_3:68239608-68239627 None:intergenic 30.0%
AGTGAGATTTGGATTTCTTT+CGG - chr8_3:68237661-68237680 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG - chr8_3:68237723-68237742 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG + chr8_3:68237898-68237917 Msa1304960:intron 30.0%
! TTATGACGATGACTTTTACT+TGG - chr8_3:68238179-68238198 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG + chr8_3:68238180-68238199 Msa1304960:CDS 30.0%
TTTAAACAAGCCAATATGGT+AGG - chr8_3:68238253-68238272 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG - chr8_3:68238325-68238344 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG - chr8_3:68238326-68238345 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG - chr8_3:68238395-68238414 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG - chr8_3:68238466-68238485 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG + chr8_3:68238469-68238488 Msa1304960:intron 30.0%
TATATAAAACTCCCATTTCC+AGG - chr8_3:68238633-68238652 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG + chr8_3:68238642-68238661 Msa1304960:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG + chr8_3:68238779-68238798 Msa1304960:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG + chr8_3:68238780-68238799 Msa1304960:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG + chr8_3:68238865-68238884 Msa1304960:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG + chr8_3:68238866-68238885 Msa1304960:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG + chr8_3:68238957-68238976 Msa1304960:CDS 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG + chr8_3:68239040-68239059 Msa1304960:three_prime_UTR 30.0%
! AACAACGAACCAATTTTACT+TGG + chr8_3:68239075-68239094 Msa1304960:three_prime_UTR 30.0%
! ACAACGAACCAATTTTACTT+GGG + chr8_3:68239076-68239095 Msa1304960:three_prime_UTR 30.0%
TCAAGCAATCTACAATTTAG+AGG + chr8_3:68239126-68239145 Msa1304960:three_prime_UTR 30.0%
CAAGCAATCTACAATTTAGA+GGG + chr8_3:68239127-68239146 Msa1304960:three_prime_UTR 30.0%
AAGCAATCTACAATTTAGAG+GGG + chr8_3:68239128-68239147 Msa1304960:three_prime_UTR 30.0%
ATGTTGAACAAACTTGATTG+CGG - chr8_3:68239189-68239208 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG - chr8_3:68239235-68239254 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG - chr8_3:68239608-68239627 None:intergenic 30.0%
GGATTTCTTTCGGATCTTAA+GGG - chr8_3:68237651-68237670 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG - chr8_3:68237652-68237671 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG - chr8_3:68237672-68237691 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG - chr8_3:68237729-68237748 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG - chr8_3:68237765-68237784 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG + chr8_3:68238061-68238080 Msa1304960:CDS 35.0%
TTCCTTTCCTTGCTAGAATA+AGG + chr8_3:68238145-68238164 Msa1304960:intron 35.0%
TTCCTTATTCTAGCAAGGAA+AGG - chr8_3:68238150-68238169 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG + chr8_3:68238151-68238170 Msa1304960:intron 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG - chr8_3:68238155-68238174 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG - chr8_3:68238324-68238343 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG - chr8_3:68238464-68238483 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG - chr8_3:68238465-68238484 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG - chr8_3:68238467-68238486 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG - chr8_3:68238501-68238520 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG + chr8_3:68238539-68238558 Msa1304960:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG + chr8_3:68239021-68239040 Msa1304960:exon 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG + chr8_3:68239039-68239058 Msa1304960:three_prime_UTR 35.0%
ATTACGCACCCAAGTAAAAT+TGG - chr8_3:68239087-68239106 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG + chr8_3:68239132-68239151 Msa1304960:three_prime_UTR 35.0%
! TCAAGTTTGTTCAACATGTG+TGG + chr8_3:68239192-68239211 Msa1304960:three_prime_UTR 35.0%
! TTTCCCCTCTATTGTTATTC+TGG + chr8_3:68239342-68239361 Msa1304960:three_prime_UTR 35.0%
! TTCCCCTCTATTGTTATTCT+GGG + chr8_3:68239343-68239362 Msa1304960:three_prime_UTR 35.0%
AGGATCCTTGTTGAAACATA+TGG + chr8_3:68239485-68239504 Msa1304960:three_prime_UTR 35.0%
GCATACCATATGTTTCAACA+AGG - chr8_3:68239493-68239512 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG - chr8_3:68239521-68239540 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG + chr8_3:68239520-68239539 Msa1304960:three_prime_UTR 35.0%
! AGCATTGAATGCATAAGCTA+AGG - chr8_3:68239628-68239647 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG + chr8_3:68239628-68239647 Msa1304960:three_prime_UTR 35.0%
GGATTTCTTTCGGATCTTAA+GGG - chr8_3:68237651-68237670 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG - chr8_3:68237652-68237671 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG - chr8_3:68237672-68237691 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG - chr8_3:68237729-68237748 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG - chr8_3:68237765-68237784 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG + chr8_3:68238061-68238080 Msa1304960:CDS 35.0%
TTCCTTTCCTTGCTAGAATA+AGG + chr8_3:68238145-68238164 Msa1304960:intron 35.0%
TTCCTTATTCTAGCAAGGAA+AGG - chr8_3:68238150-68238169 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG + chr8_3:68238151-68238170 Msa1304960:intron 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG - chr8_3:68238155-68238174 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG - chr8_3:68238324-68238343 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG - chr8_3:68238464-68238483 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG - chr8_3:68238465-68238484 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG - chr8_3:68238467-68238486 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG - chr8_3:68238501-68238520 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG + chr8_3:68238539-68238558 Msa1304960:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG + chr8_3:68239021-68239040 Msa1304960:exon 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG + chr8_3:68239039-68239058 Msa1304960:three_prime_UTR 35.0%
ATTACGCACCCAAGTAAAAT+TGG - chr8_3:68239087-68239106 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG + chr8_3:68239132-68239151 Msa1304960:three_prime_UTR 35.0%
! TCAAGTTTGTTCAACATGTG+TGG + chr8_3:68239192-68239211 Msa1304960:three_prime_UTR 35.0%
! TTTCCCCTCTATTGTTATTC+TGG + chr8_3:68239342-68239361 Msa1304960:three_prime_UTR 35.0%
! TTCCCCTCTATTGTTATTCT+GGG + chr8_3:68239343-68239362 Msa1304960:three_prime_UTR 35.0%
AGGATCCTTGTTGAAACATA+TGG + chr8_3:68239485-68239504 Msa1304960:three_prime_UTR 35.0%
GCATACCATATGTTTCAACA+AGG - chr8_3:68239493-68239512 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG - chr8_3:68239521-68239540 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG + chr8_3:68239520-68239539 Msa1304960:three_prime_UTR 35.0%
! AGCATTGAATGCATAAGCTA+AGG - chr8_3:68239628-68239647 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG + chr8_3:68239628-68239647 Msa1304960:three_prime_UTR 35.0%
! AGAAGAAGATATTGGTGGGT+AGG + chr8_3:68237484-68237503 Msa1304960:five_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG + chr8_3:68237485-68237504 Msa1304960:five_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG + chr8_3:68237486-68237505 Msa1304960:five_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG - chr8_3:68237515-68237534 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG - chr8_3:68237523-68237542 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG - chr8_3:68237524-68237543 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG - chr8_3:68237547-68237566 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG - chr8_3:68237720-68237739 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG + chr8_3:68237901-68237920 Msa1304960:intron 40.0%
! AACCAAAGAAGGTGATTTGC+TGG + chr8_3:68238072-68238091 Msa1304960:intron 40.0%
TACCAGCAAATCACCTTCTT+TGG - chr8_3:68238077-68238096 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG - chr8_3:68238243-68238262 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG - chr8_3:68238463-68238482 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG + chr8_3:68238597-68238616 Msa1304960:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG + chr8_3:68238601-68238620 Msa1304960:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG + chr8_3:68238602-68238621 Msa1304960:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG + chr8_3:68238649-68238668 Msa1304960:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG - chr8_3:68238837-68238856 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG - chr8_3:68238983-68239002 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG + chr8_3:68239026-68239045 Msa1304960:exon 40.0%
CAATCTACAATTTAGAGGGG+TGG + chr8_3:68239131-68239150 Msa1304960:three_prime_UTR 40.0%
ATCTACAATTTAGAGGGGTG+GGG + chr8_3:68239133-68239152 Msa1304960:three_prime_UTR 40.0%
CATGTGTGGTTTACAGTCAA+TGG + chr8_3:68239206-68239225 Msa1304960:three_prime_UTR 40.0%
GTCAATGGTTTCCTCTATTG+TGG + chr8_3:68239221-68239240 Msa1304960:three_prime_UTR 40.0%
TAAACTCAATGAATCCGGCA+AGG - chr8_3:68239285-68239304 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG - chr8_3:68239290-68239309 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG + chr8_3:68239287-68239306 Msa1304960:three_prime_UTR 40.0%
AGCCCAGAATAACAATAGAG+GGG - chr8_3:68239348-68239367 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG - chr8_3:68239349-68239368 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG - chr8_3:68239350-68239369 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG - chr8_3:68239480-68239499 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG - chr8_3:68239515-68239534 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG + chr8_3:68239515-68239534 Msa1304960:three_prime_UTR 40.0%
TAAGCAGACATATAGAGGAG+AGG - chr8_3:68239551-68239570 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG + chr8_3:68239565-68239584 Msa1304960:three_prime_UTR 40.0%
! GCTTACGTCGAAACGTTTTT+GGG + chr8_3:68239566-68239585 Msa1304960:three_prime_UTR 40.0%
! AGAAGAAGATATTGGTGGGT+AGG + chr8_3:68237484-68237503 Msa1304960:five_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG + chr8_3:68237485-68237504 Msa1304960:five_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG + chr8_3:68237486-68237505 Msa1304960:five_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG - chr8_3:68237515-68237534 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG - chr8_3:68237523-68237542 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG - chr8_3:68237524-68237543 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG - chr8_3:68237547-68237566 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG - chr8_3:68237720-68237739 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG + chr8_3:68237901-68237920 Msa1304960:intron 40.0%
! AACCAAAGAAGGTGATTTGC+TGG + chr8_3:68238072-68238091 Msa1304960:intron 40.0%
TACCAGCAAATCACCTTCTT+TGG - chr8_3:68238077-68238096 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG - chr8_3:68238243-68238262 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG - chr8_3:68238463-68238482 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG + chr8_3:68238597-68238616 Msa1304960:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG + chr8_3:68238601-68238620 Msa1304960:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG + chr8_3:68238602-68238621 Msa1304960:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG + chr8_3:68238649-68238668 Msa1304960:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG - chr8_3:68238837-68238856 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG - chr8_3:68238983-68239002 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG + chr8_3:68239026-68239045 Msa1304960:exon 40.0%
CAATCTACAATTTAGAGGGG+TGG + chr8_3:68239131-68239150 Msa1304960:three_prime_UTR 40.0%
ATCTACAATTTAGAGGGGTG+GGG + chr8_3:68239133-68239152 Msa1304960:three_prime_UTR 40.0%
CATGTGTGGTTTACAGTCAA+TGG + chr8_3:68239206-68239225 Msa1304960:three_prime_UTR 40.0%
GTCAATGGTTTCCTCTATTG+TGG + chr8_3:68239221-68239240 Msa1304960:three_prime_UTR 40.0%
TAAACTCAATGAATCCGGCA+AGG - chr8_3:68239285-68239304 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG - chr8_3:68239290-68239309 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG + chr8_3:68239287-68239306 Msa1304960:three_prime_UTR 40.0%
AGCCCAGAATAACAATAGAG+GGG - chr8_3:68239348-68239367 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG - chr8_3:68239349-68239368 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG - chr8_3:68239350-68239369 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG - chr8_3:68239480-68239499 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG - chr8_3:68239515-68239534 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG + chr8_3:68239515-68239534 Msa1304960:three_prime_UTR 40.0%
TAAGCAGACATATAGAGGAG+AGG - chr8_3:68239551-68239570 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG + chr8_3:68239565-68239584 Msa1304960:three_prime_UTR 40.0%
! GCTTACGTCGAAACGTTTTT+GGG + chr8_3:68239566-68239585 Msa1304960:three_prime_UTR 40.0%
CAAGGGTTTGTCTTCGATTG+GGG - chr8_3:68237522-68237541 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG - chr8_3:68237539-68237558 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG - chr8_3:68237540-68237559 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG + chr8_3:68237544-68237563 Msa1304960:exon 45.0%
GCCATATGAGAGAAGCGATT+TGG - chr8_3:68237548-68237567 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG - chr8_3:68237573-68237592 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG - chr8_3:68237750-68237769 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG + chr8_3:68238202-68238221 Msa1304960:CDS 45.0%
AAGCACAGCGTAAAAGAGGT+AGG + chr8_3:68238206-68238225 Msa1304960:intron 45.0%
CCGTACATTGCCTACCATAT+TGG + chr8_3:68238240-68238259 Msa1304960:intron 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG + chr8_3:68238545-68238564 Msa1304960:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG + chr8_3:68238553-68238572 Msa1304960:intron 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG + chr8_3:68238612-68238631 Msa1304960:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG + chr8_3:68238619-68238638 Msa1304960:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG - chr8_3:68238683-68238702 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG - chr8_3:68238684-68238703 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG + chr8_3:68238797-68238816 Msa1304960:CDS 45.0%
ATGAATCCGGCAAGGTCAAA+AGG - chr8_3:68239277-68239296 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG - chr8_3:68239556-68239575 None:intergenic 45.0%
CAAGGGTTTGTCTTCGATTG+GGG - chr8_3:68237522-68237541 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG - chr8_3:68237539-68237558 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG - chr8_3:68237540-68237559 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG + chr8_3:68237544-68237563 Msa1304960:exon 45.0%
GCCATATGAGAGAAGCGATT+TGG - chr8_3:68237548-68237567 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG - chr8_3:68237573-68237592 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG - chr8_3:68237750-68237769 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG + chr8_3:68238202-68238221 Msa1304960:CDS 45.0%
AAGCACAGCGTAAAAGAGGT+AGG + chr8_3:68238206-68238225 Msa1304960:intron 45.0%
CCGTACATTGCCTACCATAT+TGG + chr8_3:68238240-68238259 Msa1304960:intron 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG + chr8_3:68238545-68238564 Msa1304960:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG + chr8_3:68238553-68238572 Msa1304960:intron 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG + chr8_3:68238612-68238631 Msa1304960:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG + chr8_3:68238619-68238638 Msa1304960:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG - chr8_3:68238683-68238702 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG - chr8_3:68238684-68238703 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG + chr8_3:68238797-68238816 Msa1304960:CDS 45.0%
ATGAATCCGGCAAGGTCAAA+AGG - chr8_3:68239277-68239296 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG - chr8_3:68239556-68239575 None:intergenic 45.0%
! TAAGGGAGTCCTTGTTGTCG+CGG - chr8_3:68237634-68237653 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG - chr8_3:68237712-68237731 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG - chr8_3:68237751-68237770 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG + chr8_3:68237748-68237767 Msa1304960:intron 50.0%
CATACATGAAGTTGGGGGGA+GGG - chr8_3:68238459-68238478 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG - chr8_3:68238460-68238479 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG + chr8_3:68238583-68238602 Msa1304960:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG + chr8_3:68238618-68238637 Msa1304960:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG - chr8_3:68238660-68238679 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG + chr8_3:68239268-68239287 Msa1304960:three_prime_UTR 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG + chr8_3:68239465-68239484 Msa1304960:three_prime_UTR 50.0%
AGGATCCTAGAGTCGGTACT+TGG - chr8_3:68239473-68239492 None:intergenic 50.0%
! TAAGGGAGTCCTTGTTGTCG+CGG - chr8_3:68237634-68237653 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG - chr8_3:68237712-68237731 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG - chr8_3:68237751-68237770 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG + chr8_3:68237748-68237767 Msa1304960:intron 50.0%
CATACATGAAGTTGGGGGGA+GGG - chr8_3:68238459-68238478 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG - chr8_3:68238460-68238479 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG + chr8_3:68238583-68238602 Msa1304960:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG + chr8_3:68238618-68238637 Msa1304960:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG - chr8_3:68238660-68238679 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG + chr8_3:68239268-68239287 Msa1304960:three_prime_UTR 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG + chr8_3:68239465-68239484 Msa1304960:three_prime_UTR 50.0%
AGGATCCTAGAGTCGGTACT+TGG - chr8_3:68239473-68239492 None:intergenic 50.0%
! AGTCCTTGTTGTCGCGGTCT+CGG - chr8_3:68237628-68237647 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG - chr8_3:68237747-68237766 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG + chr8_3:68237744-68237763 Msa1304960:CDS 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG + chr8_3:68238563-68238582 Msa1304960:intron 55.0%
CAATTTAGAGGGGTGGGGTG+CGG + chr8_3:68239138-68239157 Msa1304960:three_prime_UTR 55.0%
GGAGAGGTTGCTCCATTCCA+AGG - chr8_3:68239535-68239554 None:intergenic 55.0%
! AGTCCTTGTTGTCGCGGTCT+CGG - chr8_3:68237628-68237647 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG - chr8_3:68237747-68237766 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG + chr8_3:68237744-68237763 Msa1304960:CDS 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG + chr8_3:68238563-68238582 Msa1304960:intron 55.0%
CAATTTAGAGGGGTGGGGTG+CGG + chr8_3:68239138-68239157 Msa1304960:three_prime_UTR 55.0%
GGAGAGGTTGCTCCATTCCA+AGG - chr8_3:68239535-68239554 None:intergenic 55.0%
CAGCCCTGTGCAGCTTTCCA+AGG + chr8_3:68238677-68238696 Msa1304960:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG + chr8_3:68238820-68238839 Msa1304960:CDS 60.0%
CAGTGCCGTATCGGGCAAGA+AGG + chr8_3:68238829-68238848 Msa1304960:CDS 60.0%
CAGCCCTGTGCAGCTTTCCA+AGG + chr8_3:68238677-68238696 Msa1304960:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG + chr8_3:68238820-68238839 Msa1304960:CDS 60.0%
CAGTGCCGTATCGGGCAAGA+AGG + chr8_3:68238829-68238848 Msa1304960:CDS 60.0%
GTGACGCTTGCGACGGTGAG+AGG - chr8_3:68237594-68237613 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG - chr8_3:68237601-68237620 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG - chr8_3:68237625-68237644 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG + chr8_3:68238821-68238840 Msa1304960:CDS 65.0%
TGCCCGATACGGCACTGCGA+CGG - chr8_3:68238826-68238845 None:intergenic 65.0%
GTGACGCTTGCGACGGTGAG+AGG - chr8_3:68237594-68237613 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG - chr8_3:68237601-68237620 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG - chr8_3:68237625-68237644 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG + chr8_3:68238821-68238840 Msa1304960:CDS 65.0%
TGCCCGATACGGCACTGCGA+CGG - chr8_3:68238826-68238845 None:intergenic 65.0%
CCGCCGAGACCGCGACAACA+AGG + chr8_3:68237622-68237641 Msa1304960:CDS 70.0%
CCGCCGAGACCGCGACAACA+AGG + chr8_3:68237622-68237641 Msa1304960:CDS 70.0%
TGTCGCGGTCTCGGCGGCTG+CGG - chr8_3:68237619-68237638 None:intergenic 75.0%
TGTCGCGGTCTCGGCGGCTG+CGG - chr8_3:68237619-68237638 None:intergenic 75.0%
! CGCGGTCTCGGCGGCTGCGG+TGG - chr8_3:68237616-68237635 None:intergenic 85.0%
! CGCGGTCTCGGCGGCTGCGG+TGG - chr8_3:68237616-68237635 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 68237465 68239771 68237465 ID=Msa1304960;Name=Msa1304960
chr8_3 mRNA 68237465 68239771 68237465 ID=Msa1304960-mRNA-1;Parent=Msa1304960;Name=Msa1304960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=98|0.66|0.85|1|1|1|7|739|203
chr8_3 exon 68237465 68237765 68237465 ID=Msa1304960-mRNA-1:exon:21083;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238004 68238082 68238004 ID=Msa1304960-mRNA-1:exon:21084;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238161 68238223 68238161 ID=Msa1304960-mRNA-1:exon:21085;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238495 68238566 68238495 ID=Msa1304960-mRNA-1:exon:21086;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238654 68238698 68238654 ID=Msa1304960-mRNA-1:exon:21087;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238794 68238850 68238794 ID=Msa1304960-mRNA-1:exon:21088;Parent=Msa1304960-mRNA-1
chr8_3 exon 68238940 68239771 68238940 ID=Msa1304960-mRNA-1:exon:21089;Parent=Msa1304960-mRNA-1
chr8_3 five_prime_UTR 68237465 68237562 68237465 ID=Msa1304960-mRNA-1:five_prime_utr;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68237563 68237765 68237563 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238004 68238082 68238004 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238161 68238223 68238161 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238495 68238566 68238495 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238654 68238698 68238654 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238794 68238850 68238794 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 CDS 68238940 68239032 68238940 ID=Msa1304960-mRNA-1:cds;Parent=Msa1304960-mRNA-1
chr8_3 three_prime_UTR 68239033 68239771 68239033 ID=Msa1304960-mRNA-1:three_prime_utr;Parent=Msa1304960-mRNA-1
Gene Sequence

>Msa1304960

ATGGCGTCCTCTCTCTCTTCTGATTCTTCCTCTCACCGTCGCAAGCGTCACCACCGCAGCCGCCGAGACCGCGACAACAAGGACTCCCTTAAGATCCGAAAGAAATCCAAATCTCACTCTCACACAAAACGACGTCGCAAACATCACCGCTACTCCTCCGATTCCGATTCTTATTCTTCTTCCTCCCTCTCTGATTCATCCAGAAGTGAGAGTTCTTCTGATAGTGAGCATGAAACATCTCATCGTTCAAAGAAGCATAAAAAGAGCGATAAACCAAAGAAGAATAAGGAAAAGGAGCCAAGTAAAAGTCATCGTCATAAACGGCATAAGCACAGCGTAAAAGAGATTCCAGTCTTAGATGCTTATGATACTTCCTTCTTTATTTTATTATGTCTTGGCTCTTTGAAATTGGAGCTGAAGCCGAATGGTGAAAGGAGCAGCAGCCCTGTGCAGCTTTCCAAGTTTTTAGGGCGCAACAAAGATGATGGTGTCCGTCGCAGTGCCGTATCGGGCAAGAAGATTCTTCTCAAACTTGATAAAACAAAGGAAGATAAGGAGGCCGAGAGCAAGAGAAATGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAG
Protein sequence

>Msa1304960

MASSLSSDSSSHRRKRHHRSRRDRDNKDSLKIRKKSKSHSHTKRRRKHHRYSSDSDSYSSSSLSDSSRSESSSDSEHETSHRSKKHKKSDKPKKNKEKEPSKSHRHKRHKHSVKEIPVLDAYDTSFFILLCLGSLKLELKPNGERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNELLNFLNASFD*