AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622100 MtrunA17_Chr7g0272161 84.653 202 6 1 2 203 5 181 6.07e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622100 AT5G27860.2 59.836 122 25 1 82 203 80 177 1.19e-29 108
Msa0622100 AT5G27860.1 59.836 122 25 1 82 203 80 177 1.19e-29 108

Find 100 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCCTCTATTGTTATTC+TGG 0.085496 4_2:-74474388 Msa0622100:three_prime_UTR
ATGTCTTGGCTCTTTGAAAT+TGG 0.244734 4_2:-74475191 Msa0622100:CDS
ATTACGCACCCAAGTAAAAT+TGG 0.260745 4_2:+74474646 None:intergenic
TACCAGCAAATCACCTTCTT+TGG 0.265893 4_2:+74475656 None:intergenic
TTCCCCTCTATTGTTATTCT+GGG 0.318071 4_2:-74474387 Msa0622100:three_prime_UTR
TGGATTTCTTTCGGATCTTA+AGG 0.321862 4_2:+74476081 None:intergenic
GCCATATGAGAGAAGCGATT+TGG 0.331117 4_2:+74476185 None:intergenic
GGTTGTAAATACAATTGATT+AGG 0.345889 4_2:-74473987 Msa0622100:three_prime_UTR
AGTGAGATTTGGATTTCTTT+CGG 0.354212 4_2:+74476072 None:intergenic
CATGTGTGGTTTACAGTCAA+TGG 0.371648 4_2:-74474524 Msa0622100:three_prime_UTR
CCATATGAGAGAAGCGATTT+GGG 0.377462 4_2:+74476186 None:intergenic
CTGCTGCTCCTTTCACCATT+CGG 0.378039 4_2:+74475073 None:intergenic
TAGCTTATGCATTCAATGCT+TGG 0.383851 4_2:-74474102 Msa0622100:three_prime_UTR
CAGTTCATTTCTCTTGCTCT+CGG 0.399682 4_2:+74474750 None:intergenic
CCCAAATCGCTTCTCTCATA+TGG 0.400613 4_2:-74476186 Msa0622100:exon
GGATTTCTTTCGGATCTTAA+GGG 0.407750 4_2:+74476082 None:intergenic
TCAAGCAATCTACAATTTAG+AGG 0.408247 4_2:-74474604 Msa0622100:three_prime_UTR
ATTACATATTCTGATACATA+AGG 0.409100 4_2:-74474331 Msa0622100:three_prime_UTR
TGGCTCTTTGAAATTGGAGC+TGG 0.410762 4_2:-74475185 Msa0622100:intron
AGGATCCTTGTTGAAACATA+TGG 0.412458 4_2:-74474245 Msa0622100:three_prime_UTR
GAAGGTATGGATTTGTTAAG+AGG 0.413335 4_2:-74474691 Msa0622100:three_prime_UTR
AGTCCTTGTTGTCGCGGTCT+CGG 0.413539 4_2:+74476105 None:intergenic
AGGTTGTTAAAAGTGTCTTT+AGG 0.416347 4_2:+74474125 None:intergenic
ACAAGGGTTTGTCTTCGATT+GGG 0.419122 4_2:+74476210 None:intergenic
ATAACCTTGGAAAGCTGCAC+AGG 0.423980 4_2:+74475049 None:intergenic
AACAAGGGTTTGTCTTCGAT+TGG 0.434734 4_2:+74476209 None:intergenic
GAAGAAGATATTGGTGGGTA+GGG 0.439694 4_2:-74476245 Msa0622100:five_prime_UTR
GTCCGTCGCAGTGCCGTATC+GGG 0.439911 4_2:-74474909 Msa0622100:CDS
TGTCCGTCGCAGTGCCGTAT+CGG 0.444932 4_2:-74474910 Msa0622100:CDS
GTCAATGGTTTCCTCTATTG+TGG 0.447734 4_2:-74474509 Msa0622100:three_prime_UTR
TTGTCTTCGATTGGGGAAAT+CGG 0.448002 4_2:+74476218 None:intergenic
CGCGGTCTCGGCGGCTGCGG+TGG 0.449012 4_2:+74476117 None:intergenic
TTACATATTCTGATACATAA+GGG 0.451756 4_2:-74474330 Msa0622100:three_prime_UTR
GTAAAAGTCATCGTCATAAA+CGG 0.452807 4_2:-74475550 Msa0622100:CDS
AATCTACAATTTAGAGGGGT+GGG 0.464409 4_2:-74474598 Msa0622100:three_prime_UTR
TGATTAGCACTGAGAAGGTA+TGG 0.466409 4_2:-74474704 Msa0622100:exon
GGAGGAAGAAGAATAAGAAT+CGG 0.483872 4_2:+74476004 None:intergenic
ATGAATCCGGCAAGGTCAAA+AGG 0.493340 4_2:+74474456 None:intergenic
CAATTTAGAGGGGTGGGGTG+CGG 0.494733 4_2:-74474592 Msa0622100:three_prime_UTR
CAGCCCTGTGCAGCTTTCCA+AGG 0.494864 4_2:-74475053 Msa0622100:intron
TTAGGGCGCAACAAAGATGA+TGG 0.501533 4_2:-74474933 Msa0622100:CDS
CCGACTAAACTCAATGAATC+CGG 0.507018 4_2:+74474443 None:intergenic
CATAACAAAATCCACAATAG+AGG 0.507467 4_2:+74474498 None:intergenic
TCCTTGCTAGAATAAGGAAA+AGG 0.507505 4_2:-74475579 Msa0622100:intron
CAAGGGTTTGTCTTCGATTG+GGG 0.509935 4_2:+74476211 None:intergenic
CCTCCCTCTCTGATTCATCC+AGG 0.511052 4_2:-74475986 Msa0622100:intron
GTATCATAAGCATCTAAGAC+TGG 0.512199 4_2:+74475232 None:intergenic
CCGGATTCATTGAGTTTAGT+CGG 0.515083 4_2:-74474443 Msa0622100:three_prime_UTR
AGGATCCTAGAGTCGGTACT+TGG 0.515915 4_2:+74474260 None:intergenic
AGAAGAAGATATTGGTGGGT+AGG 0.516525 4_2:-74476246 Msa0622100:five_prime_UTR
AAAGAGCGATAAACCAAAGA+AGG 0.525894 4_2:-74475669 Msa0622100:intron
TGATAAAACAAAGGAAGATA+AGG 0.526792 4_2:-74474776 Msa0622100:CDS
CCGCCGAGACCGCGACAACA+AGG 0.526959 4_2:-74476108 Msa0622100:CDS
TAATACCTTCTTGCCCGATA+CGG 0.527264 4_2:+74474896 None:intergenic
TGAGCCCAGAATAACAATAG+AGG 0.528765 4_2:+74474383 None:intergenic
TGTCGCGGTCTCGGCGGCTG+CGG 0.529009 4_2:+74476114 None:intergenic
CAAGCAATCTACAATTTAGA+GGG 0.530838 4_2:-74474603 Msa0622100:three_prime_UTR
TTGTGCCAAGTACCGACTCT+AGG 0.532249 4_2:-74474265 Msa0622100:three_prime_UTR
ATTCCAAGGTCAAGTTTACA+AGG 0.535708 4_2:+74474212 None:intergenic
CGACGTAAGCAGACATATAG+AGG 0.535710 4_2:+74474177 None:intergenic
AAGACATAATAAAATAAAGA+AGG 0.536268 4_2:+74475207 None:intergenic
AAGAAGATATTGGTGGGTAG+GGG 0.538456 4_2:-74476244 Msa0622100:five_prime_UTR
AGAAGAATAAGAATCGGAAT+CGG 0.539647 4_2:+74476010 None:intergenic
CAATCTACAATTTAGAGGGG+TGG 0.547206 4_2:-74474599 Msa0622100:three_prime_UTR
TTGTAAACTTGACCTTGGAA+TGG 0.547705 4_2:-74474210 Msa0622100:three_prime_UTR
GAGCCCAGAATAACAATAGA+GGG 0.549145 4_2:+74474384 None:intergenic
AAGGTATGGATTTGTTAAGA+GGG 0.551503 4_2:-74474690 Msa0622100:three_prime_UTR
ATGCCTTGTAAACTTGACCT+TGG 0.556594 4_2:-74474215 Msa0622100:three_prime_UTR
GCATAAGCACAGCGTAAAAG+AGG 0.563006 4_2:-74475528 Msa0622100:intron
AGCATTGAATGCATAAGCTA+AGG 0.565531 4_2:+74474105 None:intergenic
AAAATTAAGAAAATATCTAT+CGG 0.567636 4_2:+74474060 None:intergenic
CAGTGCCGTATCGGGCAAGA+AGG 0.568115 4_2:-74474901 Msa0622100:intron
TCAAGTTTGTTCAACATGTG+TGG 0.571411 4_2:-74474538 Msa0622100:three_prime_UTR
GGAAGAATCAGAAGAGAGAG+AGG 0.573784 4_2:+74476160 None:intergenic
GTGACGCTTGCGACGGTGAG+AGG 0.575207 4_2:+74476139 None:intergenic
ATCTACAATTTAGAGGGGTG+GGG 0.575541 4_2:-74474597 Msa0622100:three_prime_UTR
GGAGAGGTTGCTCCATTCCA+AGG 0.575893 4_2:+74474198 None:intergenic
TGCCCGATACGGCACTGCGA+CGG 0.576742 4_2:+74474907 None:intergenic
TCTCAAACTTGATAAAACAA+AGG 0.586653 4_2:-74474785 Msa0622100:CDS
TATAGAAGCCGAATGGTGAA+AGG 0.589342 4_2:-74475081 Msa0622100:intron
AGAGAAGCGATTTGGGAACA+AGG 0.589791 4_2:+74476193 None:intergenic
AATCGGAATCGGAGGAGTAG+CGG 0.592060 4_2:+74476021 None:intergenic
TAAGGGAGTCCTTGTTGTCG+CGG 0.602516 4_2:+74476099 None:intergenic
TGCGGTGGTGACGCTTGCGA+CGG 0.609611 4_2:+74476132 None:intergenic
GAGAAGCGATTTGGGAACAA+GGG 0.611184 4_2:+74476194 None:intergenic
AGAATAAGAATCGGAATCGG+AGG 0.613396 4_2:+74476013 None:intergenic
CCTGGATGAATCAGAGAGGG+AGG 0.622668 4_2:+74475986 None:intergenic
TAACCTTGGAAAGCTGCACA+GGG 0.626974 4_2:+74475050 None:intergenic
TAAAACAAAGGAAGATAAGG+AGG 0.629537 4_2:-74474773 Msa0622100:CDS
AGGTCAAGTTTACAAGGCAT+AGG 0.639197 4_2:+74474218 None:intergenic
ATGTTGAACAAACTTGATTG+CGG 0.643868 4_2:+74474544 None:intergenic
CTACCTGGATGAATCAGAGA+GGG 0.654886 4_2:+74475983 None:intergenic
TTCAACAAGGATCCTAGAGT+CGG 0.663125 4_2:+74474253 None:intergenic
AGCCCAGAATAACAATAGAG+GGG 0.663633 4_2:+74474385 None:intergenic
TAAACTCAATGAATCCGGCA+AGG 0.664115 4_2:+74474448 None:intergenic
TAAGCAGACATATAGAGGAG+AGG 0.664169 4_2:+74474182 None:intergenic
CCTTGTTGTCGCGGTCTCGG+CGG 0.689888 4_2:+74476108 None:intergenic
AAGCAATCTACAATTTAGAG+GGG 0.694026 4_2:-74474602 Msa0622100:three_prime_UTR
GCATACCATATGTTTCAACA+AGG 0.715480 4_2:+74474240 None:intergenic
CCTACCTGGATGAATCAGAG+AGG 0.719578 4_2:+74475982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATTAATTTAATCTA+TGG - chr4_2:74474442-74474461 Msa0622100:three_prime_UTR 10.0%
!! AAAATTAAGAAAATATCTAT+CGG + chr4_2:74476189-74476208 None:intergenic 10.0%
!! TATGTTATTAATTTAATCTA+TGG - chr4_2:74474442-74474461 Msa0622100:three_prime_UTR 10.0%
!! AAAATTAAGAAAATATCTAT+CGG + chr4_2:74476189-74476208 None:intergenic 10.0%
!!! ACATCTTGAAAATATTTTAT+TGG - chr4_2:74474870-74474889 Msa0622100:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG + chr4_2:74475042-74475061 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG - chr4_2:74475041-74475060 Msa0622100:intron 15.0%
!!! ACATCTTGAAAATATTTTAT+TGG - chr4_2:74474870-74474889 Msa0622100:intron 15.0%
!! AAGACATAATAAAATAAAGA+AGG + chr4_2:74475042-74475061 None:intergenic 15.0%
!!! TTCTTTATTTTATTATGTCT+TGG - chr4_2:74475041-74475060 Msa0622100:intron 15.0%
!! AAGAAAAAAGAAGAAGATAT+TGG - chr4_2:74473992-74474011 Msa0622100:three_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG + chr4_2:74474292-74474311 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG - chr4_2:74474401-74474420 Msa0622100:three_prime_UTR 20.0%
!!! ATTTAATCTATGGATTAATC+TGG - chr4_2:74474452-74474471 Msa0622100:three_prime_UTR 20.0%
!! AAGATGTAATACATTTATAG+AGG + chr4_2:74474857-74474876 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG - chr4_2:74474918-74474937 Msa0622100:CDS 20.0%
!! ACTAAAACTTGTATAATAGA+GGG - chr4_2:74474919-74474938 Msa0622100:CDS 20.0%
!! TCATAAGAAAAAAATAACCT+TGG + chr4_2:74475213-74475232 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG + chr4_2:74475844-74475863 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG - chr4_2:74475915-74475934 Msa0622100:intron 20.0%
!! TTACATATTCTGATACATAA+GGG - chr4_2:74475916-74475935 Msa0622100:intron 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG + chr4_2:74476241-74476260 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG + chr4_2:74476242-74476261 None:intergenic 20.0%
!! AAGAAAAAAGAAGAAGATAT+TGG - chr4_2:74473992-74474011 Msa0622100:three_prime_UTR 20.0%
!! GTAATAGAAACAAATTGAAA+TGG + chr4_2:74474292-74474311 None:intergenic 20.0%
!!! AATTGCTTTTGTTTTAGAAT+TGG - chr4_2:74474401-74474420 Msa0622100:three_prime_UTR 20.0%
!!! ATTTAATCTATGGATTAATC+TGG - chr4_2:74474452-74474471 Msa0622100:three_prime_UTR 20.0%
!! AAGATGTAATACATTTATAG+AGG + chr4_2:74474857-74474876 None:intergenic 20.0%
!! TACTAAAACTTGTATAATAG+AGG - chr4_2:74474918-74474937 Msa0622100:CDS 20.0%
!! ACTAAAACTTGTATAATAGA+GGG - chr4_2:74474919-74474938 Msa0622100:CDS 20.0%
!! TCATAAGAAAAAAATAACCT+TGG + chr4_2:74475213-74475232 None:intergenic 20.0%
!! GGGAAAACTATTAAAAAAAA+TGG + chr4_2:74475844-74475863 None:intergenic 20.0%
!! ATTACATATTCTGATACATA+AGG - chr4_2:74475915-74475934 Msa0622100:intron 20.0%
!! TTACATATTCTGATACATAA+GGG - chr4_2:74475916-74475935 Msa0622100:intron 20.0%
!! CCATCTCTTAAAAAAAAATT+GGG + chr4_2:74476241-74476260 None:intergenic 20.0%
!! ACCATCTCTTAAAAAAAAAT+TGG + chr4_2:74476242-74476261 None:intergenic 20.0%
! AAAAAAGAAGAAGATATTGG+TGG - chr4_2:74473995-74474014 Msa0622100:three_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG - chr4_2:74473996-74474015 Msa0622100:three_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG - chr4_2:74474367-74474386 Msa0622100:three_prime_UTR 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG - chr4_2:74474409-74474428 Msa0622100:three_prime_UTR 25.0%
! AAAGGAAGATGTAAGATATA+TGG + chr4_2:74474648-74474667 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG + chr4_2:74474773-74474792 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG - chr4_2:74475461-74475480 Msa0622100:intron 25.0%
! TGATAAAACAAAGGAAGATA+AGG - chr4_2:74475470-74475489 Msa0622100:intron 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG - chr4_2:74476238-74476257 Msa0622100:five_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG - chr4_2:74476259-74476278 Msa0622100:five_prime_UTR 25.0%
! AAAAAAGAAGAAGATATTGG+TGG - chr4_2:74473995-74474014 Msa0622100:three_prime_UTR 25.0%
! AAAAAGAAGAAGATATTGGT+GGG - chr4_2:74473996-74474015 Msa0622100:three_prime_UTR 25.0%
! TTCTCAATCAGAAATAGTTT+AGG - chr4_2:74474367-74474386 Msa0622100:three_prime_UTR 25.0%
!!! TTGTTTTAGAATTGGTATTG+TGG - chr4_2:74474409-74474428 Msa0622100:three_prime_UTR 25.0%
! AAAGGAAGATGTAAGATATA+TGG + chr4_2:74474648-74474667 None:intergenic 25.0%
! ACAATTTAAACAAGCCAATA+TGG + chr4_2:74474773-74474792 None:intergenic 25.0%
! TCTCAAACTTGATAAAACAA+AGG - chr4_2:74475461-74475480 Msa0622100:intron 25.0%
! TGATAAAACAAAGGAAGATA+AGG - chr4_2:74475470-74475489 Msa0622100:intron 25.0%
!!! CCCAATTTTTTTTTAAGAGA+TGG - chr4_2:74476238-74476257 Msa0622100:five_prime_UTR 25.0%
! GGTTGTAAATACAATTGATT+AGG - chr4_2:74476259-74476278 Msa0622100:five_prime_UTR 25.0%
AGTGAGATTTGGATTTCTTT+CGG + chr4_2:74474177-74474196 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG + chr4_2:74474239-74474258 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG - chr4_2:74474414-74474433 Msa0622100:three_prime_UTR 30.0%
! TTATGACGATGACTTTTACT+TGG + chr4_2:74474695-74474714 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG - chr4_2:74474696-74474715 Msa0622100:three_prime_UTR 30.0%
TTTAAACAAGCCAATATGGT+AGG + chr4_2:74474769-74474788 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG + chr4_2:74474841-74474860 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG + chr4_2:74474842-74474861 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG + chr4_2:74474911-74474930 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG + chr4_2:74474982-74475001 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG - chr4_2:74474985-74475004 Msa0622100:intron 30.0%
TATATAAAACTCCCATTTCC+AGG + chr4_2:74475149-74475168 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG - chr4_2:74475158-74475177 Msa0622100:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG - chr4_2:74475295-74475314 Msa0622100:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG - chr4_2:74475296-74475315 Msa0622100:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG - chr4_2:74475381-74475400 Msa0622100:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG - chr4_2:74475382-74475401 Msa0622100:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG - chr4_2:74475473-74475492 Msa0622100:intron 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG - chr4_2:74475556-74475575 Msa0622100:CDS 30.0%
! AACAACGAACCAATTTTACT+TGG - chr4_2:74475591-74475610 Msa0622100:intron 30.0%
! ACAACGAACCAATTTTACTT+GGG - chr4_2:74475592-74475611 Msa0622100:intron 30.0%
TCAAGCAATCTACAATTTAG+AGG - chr4_2:74475642-74475661 Msa0622100:intron 30.0%
CAAGCAATCTACAATTTAGA+GGG - chr4_2:74475643-74475662 Msa0622100:intron 30.0%
AAGCAATCTACAATTTAGAG+GGG - chr4_2:74475644-74475663 Msa0622100:intron 30.0%
ATGTTGAACAAACTTGATTG+CGG + chr4_2:74475705-74475724 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG + chr4_2:74475751-74475770 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG + chr4_2:74476124-74476143 None:intergenic 30.0%
AGTGAGATTTGGATTTCTTT+CGG + chr4_2:74474177-74474196 None:intergenic 30.0%
AGAAGAATAAGAATCGGAAT+CGG + chr4_2:74474239-74474258 None:intergenic 30.0%
TTAGAATTGGTATTGTGGAA+TGG - chr4_2:74474414-74474433 Msa0622100:three_prime_UTR 30.0%
! TTATGACGATGACTTTTACT+TGG + chr4_2:74474695-74474714 None:intergenic 30.0%
GTAAAAGTCATCGTCATAAA+CGG - chr4_2:74474696-74474715 Msa0622100:three_prime_UTR 30.0%
TTTAAACAAGCCAATATGGT+AGG + chr4_2:74474769-74474788 None:intergenic 30.0%
! ATAGAGGTGTATCATAACAA+GGG + chr4_2:74474841-74474860 None:intergenic 30.0%
! TATAGAGGTGTATCATAACA+AGG + chr4_2:74474842-74474861 None:intergenic 30.0%
!! ACAAGTTTTAGTACGAGAAA+AGG + chr4_2:74474911-74474930 None:intergenic 30.0%
ACAGTAACATACATGAAGTT+GGG + chr4_2:74474982-74475001 None:intergenic 30.0%
TTCATGTATGTTACTGTGTT+TGG - chr4_2:74474985-74475004 Msa0622100:intron 30.0%
TATATAAAACTCCCATTTCC+AGG + chr4_2:74475149-74475168 None:intergenic 30.0%
!! AGTTTTATATAGAAGCCGAA+TGG - chr4_2:74475158-74475177 Msa0622100:intron 30.0%
! TTTGTGCTTGATCAGTTTTT+AGG - chr4_2:74475295-74475314 Msa0622100:intron 30.0%
! TTGTGCTTGATCAGTTTTTA+GGG - chr4_2:74475296-74475315 Msa0622100:intron 30.0%
! TTTGACAGTTATCTGTTTCT+TGG - chr4_2:74475381-74475400 Msa0622100:intron 30.0%
! TTGACAGTTATCTGTTTCTT+GGG - chr4_2:74475382-74475401 Msa0622100:intron 30.0%
TAAAACAAAGGAAGATAAGG+AGG - chr4_2:74475473-74475492 Msa0622100:intron 30.0%
!! AAGGTATGGATTTGTTAAGA+GGG - chr4_2:74475556-74475575 Msa0622100:CDS 30.0%
! AACAACGAACCAATTTTACT+TGG - chr4_2:74475591-74475610 Msa0622100:intron 30.0%
! ACAACGAACCAATTTTACTT+GGG - chr4_2:74475592-74475611 Msa0622100:intron 30.0%
TCAAGCAATCTACAATTTAG+AGG - chr4_2:74475642-74475661 Msa0622100:intron 30.0%
CAAGCAATCTACAATTTAGA+GGG - chr4_2:74475643-74475662 Msa0622100:intron 30.0%
AAGCAATCTACAATTTAGAG+GGG - chr4_2:74475644-74475663 Msa0622100:intron 30.0%
ATGTTGAACAAACTTGATTG+CGG + chr4_2:74475705-74475724 None:intergenic 30.0%
CATAACAAAATCCACAATAG+AGG + chr4_2:74475751-74475770 None:intergenic 30.0%
!! AGGTTGTTAAAAGTGTCTTT+AGG + chr4_2:74476124-74476143 None:intergenic 30.0%
GGATTTCTTTCGGATCTTAA+GGG + chr4_2:74474167-74474186 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG + chr4_2:74474168-74474187 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG + chr4_2:74474188-74474207 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG + chr4_2:74474245-74474264 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG + chr4_2:74474281-74474300 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG - chr4_2:74474577-74474596 Msa0622100:three_prime_UTR 35.0%
TTCCTTTCCTTGCTAGAATA+AGG - chr4_2:74474661-74474680 Msa0622100:three_prime_UTR 35.0%
TTCCTTATTCTAGCAAGGAA+AGG + chr4_2:74474666-74474685 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG - chr4_2:74474667-74474686 Msa0622100:three_prime_UTR 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG + chr4_2:74474671-74474690 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG + chr4_2:74474840-74474859 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG + chr4_2:74474980-74474999 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG + chr4_2:74474981-74475000 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG + chr4_2:74474983-74475002 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG + chr4_2:74475017-74475036 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG - chr4_2:74475055-74475074 Msa0622100:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG - chr4_2:74475537-74475556 Msa0622100:CDS 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG - chr4_2:74475555-74475574 Msa0622100:CDS 35.0%
ATTACGCACCCAAGTAAAAT+TGG + chr4_2:74475603-74475622 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG - chr4_2:74475648-74475667 Msa0622100:intron 35.0%
! TCAAGTTTGTTCAACATGTG+TGG - chr4_2:74475708-74475727 Msa0622100:CDS 35.0%
! TTTCCCCTCTATTGTTATTC+TGG - chr4_2:74475858-74475877 Msa0622100:intron 35.0%
! TTCCCCTCTATTGTTATTCT+GGG - chr4_2:74475859-74475878 Msa0622100:intron 35.0%
AGGATCCTTGTTGAAACATA+TGG - chr4_2:74476001-74476020 Msa0622100:CDS 35.0%
GCATACCATATGTTTCAACA+AGG + chr4_2:74476009-74476028 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG + chr4_2:74476037-74476056 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG - chr4_2:74476036-74476055 Msa0622100:CDS 35.0%
! AGCATTGAATGCATAAGCTA+AGG + chr4_2:74476144-74476163 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG - chr4_2:74476144-74476163 Msa0622100:CDS 35.0%
GGATTTCTTTCGGATCTTAA+GGG + chr4_2:74474167-74474186 None:intergenic 35.0%
TGGATTTCTTTCGGATCTTA+AGG + chr4_2:74474168-74474187 None:intergenic 35.0%
! TTTTGTGTGAGAGTGAGATT+TGG + chr4_2:74474188-74474207 None:intergenic 35.0%
GGAGGAAGAAGAATAAGAAT+CGG + chr4_2:74474245-74474264 None:intergenic 35.0%
AAATTGAAATGGAACCTACC+TGG + chr4_2:74474281-74474300 None:intergenic 35.0%
AAAGAGCGATAAACCAAAGA+AGG - chr4_2:74474577-74474596 Msa0622100:three_prime_UTR 35.0%
TTCCTTTCCTTGCTAGAATA+AGG - chr4_2:74474661-74474680 Msa0622100:three_prime_UTR 35.0%
TTCCTTATTCTAGCAAGGAA+AGG + chr4_2:74474666-74474685 None:intergenic 35.0%
TCCTTGCTAGAATAAGGAAA+AGG - chr4_2:74474667-74474686 Msa0622100:three_prime_UTR 35.0%
! TCCTTTTCCTTATTCTAGCA+AGG + chr4_2:74474671-74474690 None:intergenic 35.0%
! TAGAGGTGTATCATAACAAG+GGG + chr4_2:74474840-74474859 None:intergenic 35.0%
AGTAACATACATGAAGTTGG+GGG + chr4_2:74474980-74474999 None:intergenic 35.0%
CAGTAACATACATGAAGTTG+GGG + chr4_2:74474981-74475000 None:intergenic 35.0%
CACAGTAACATACATGAAGT+TGG + chr4_2:74474983-74475002 None:intergenic 35.0%
! GTATCATAAGCATCTAAGAC+TGG + chr4_2:74475017-74475036 None:intergenic 35.0%
!! ATGTCTTGGCTCTTTGAAAT+TGG - chr4_2:74475055-74475074 Msa0622100:CDS 35.0%
!!! AGTTTTGATTAGCACTGAGA+AGG - chr4_2:74475537-74475556 Msa0622100:CDS 35.0%
!! GAAGGTATGGATTTGTTAAG+AGG - chr4_2:74475555-74475574 Msa0622100:CDS 35.0%
ATTACGCACCCAAGTAAAAT+TGG + chr4_2:74475603-74475622 None:intergenic 35.0%
AATCTACAATTTAGAGGGGT+GGG - chr4_2:74475648-74475667 Msa0622100:intron 35.0%
! TCAAGTTTGTTCAACATGTG+TGG - chr4_2:74475708-74475727 Msa0622100:CDS 35.0%
! TTTCCCCTCTATTGTTATTC+TGG - chr4_2:74475858-74475877 Msa0622100:intron 35.0%
! TTCCCCTCTATTGTTATTCT+GGG - chr4_2:74475859-74475878 Msa0622100:intron 35.0%
AGGATCCTTGTTGAAACATA+TGG - chr4_2:74476001-74476020 Msa0622100:CDS 35.0%
GCATACCATATGTTTCAACA+AGG + chr4_2:74476009-74476028 None:intergenic 35.0%
ATTCCAAGGTCAAGTTTACA+AGG + chr4_2:74476037-74476056 None:intergenic 35.0%
TTGTAAACTTGACCTTGGAA+TGG - chr4_2:74476036-74476055 Msa0622100:CDS 35.0%
! AGCATTGAATGCATAAGCTA+AGG + chr4_2:74476144-74476163 None:intergenic 35.0%
TAGCTTATGCATTCAATGCT+TGG - chr4_2:74476144-74476163 Msa0622100:CDS 35.0%
! AGAAGAAGATATTGGTGGGT+AGG - chr4_2:74474000-74474019 Msa0622100:three_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG - chr4_2:74474001-74474020 Msa0622100:three_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG - chr4_2:74474002-74474021 Msa0622100:three_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG + chr4_2:74474031-74474050 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG + chr4_2:74474039-74474058 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG + chr4_2:74474040-74474059 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG + chr4_2:74474063-74474082 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG + chr4_2:74474236-74474255 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG - chr4_2:74474417-74474436 Msa0622100:three_prime_UTR 40.0%
! AACCAAAGAAGGTGATTTGC+TGG - chr4_2:74474588-74474607 Msa0622100:three_prime_UTR 40.0%
TACCAGCAAATCACCTTCTT+TGG + chr4_2:74474593-74474612 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG + chr4_2:74474759-74474778 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG + chr4_2:74474979-74474998 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG - chr4_2:74475113-74475132 Msa0622100:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG - chr4_2:74475117-74475136 Msa0622100:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG - chr4_2:74475118-74475137 Msa0622100:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG - chr4_2:74475165-74475184 Msa0622100:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG + chr4_2:74475353-74475372 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG + chr4_2:74475499-74475518 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG - chr4_2:74475542-74475561 Msa0622100:CDS 40.0%
CAATCTACAATTTAGAGGGG+TGG - chr4_2:74475647-74475666 Msa0622100:intron 40.0%
ATCTACAATTTAGAGGGGTG+GGG - chr4_2:74475649-74475668 Msa0622100:intron 40.0%
CATGTGTGGTTTACAGTCAA+TGG - chr4_2:74475722-74475741 Msa0622100:CDS 40.0%
GTCAATGGTTTCCTCTATTG+TGG - chr4_2:74475737-74475756 Msa0622100:intron 40.0%
TAAACTCAATGAATCCGGCA+AGG + chr4_2:74475801-74475820 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG + chr4_2:74475806-74475825 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG - chr4_2:74475803-74475822 Msa0622100:intron 40.0%
AGCCCAGAATAACAATAGAG+GGG + chr4_2:74475864-74475883 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG + chr4_2:74475865-74475884 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG + chr4_2:74475866-74475885 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG + chr4_2:74475996-74476015 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG + chr4_2:74476031-74476050 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG - chr4_2:74476031-74476050 Msa0622100:CDS 40.0%
TAAGCAGACATATAGAGGAG+AGG + chr4_2:74476067-74476086 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG - chr4_2:74476081-74476100 Msa0622100:CDS 40.0%
! GCTTACGTCGAAACGTTTTT+GGG - chr4_2:74476082-74476101 Msa0622100:CDS 40.0%
! AGAAGAAGATATTGGTGGGT+AGG - chr4_2:74474000-74474019 Msa0622100:three_prime_UTR 40.0%
! GAAGAAGATATTGGTGGGTA+GGG - chr4_2:74474001-74474020 Msa0622100:three_prime_UTR 40.0%
! AAGAAGATATTGGTGGGTAG+GGG - chr4_2:74474002-74474021 Msa0622100:three_prime_UTR 40.0%
TTGTCTTCGATTGGGGAAAT+CGG + chr4_2:74474031-74474050 None:intergenic 40.0%
ACAAGGGTTTGTCTTCGATT+GGG + chr4_2:74474039-74474058 None:intergenic 40.0%
AACAAGGGTTTGTCTTCGAT+TGG + chr4_2:74474040-74474059 None:intergenic 40.0%
CCATATGAGAGAAGCGATTT+GGG + chr4_2:74474063-74474082 None:intergenic 40.0%
AGAATAAGAATCGGAATCGG+AGG + chr4_2:74474236-74474255 None:intergenic 40.0%
GAATTGGTATTGTGGAATGG+AGG - chr4_2:74474417-74474436 Msa0622100:three_prime_UTR 40.0%
! AACCAAAGAAGGTGATTTGC+TGG - chr4_2:74474588-74474607 Msa0622100:three_prime_UTR 40.0%
TACCAGCAAATCACCTTCTT+TGG + chr4_2:74474593-74474612 None:intergenic 40.0%
CCAATATGGTAGGCAATGTA+CGG + chr4_2:74474759-74474778 None:intergenic 40.0%
GTAACATACATGAAGTTGGG+GGG + chr4_2:74474979-74474998 None:intergenic 40.0%
!! CTTGCTTGGATGTTGTTTCT+TGG - chr4_2:74475113-74475132 Msa0622100:intron 40.0%
!! CTTGGATGTTGTTTCTTGGT+CGG - chr4_2:74475117-74475136 Msa0622100:intron 40.0%
!! TTGGATGTTGTTTCTTGGTC+GGG - chr4_2:74475118-74475137 Msa0622100:intron 40.0%
TATAGAAGCCGAATGGTGAA+AGG - chr4_2:74475165-74475184 Msa0622100:intron 40.0%
TAATACCTTCTTGCCCGATA+CGG + chr4_2:74475353-74475372 None:intergenic 40.0%
CAGTTCATTTCTCTTGCTCT+CGG + chr4_2:74475499-74475518 None:intergenic 40.0%
! TGATTAGCACTGAGAAGGTA+TGG - chr4_2:74475542-74475561 Msa0622100:CDS 40.0%
CAATCTACAATTTAGAGGGG+TGG - chr4_2:74475647-74475666 Msa0622100:intron 40.0%
ATCTACAATTTAGAGGGGTG+GGG - chr4_2:74475649-74475668 Msa0622100:intron 40.0%
CATGTGTGGTTTACAGTCAA+TGG - chr4_2:74475722-74475741 Msa0622100:CDS 40.0%
GTCAATGGTTTCCTCTATTG+TGG - chr4_2:74475737-74475756 Msa0622100:intron 40.0%
TAAACTCAATGAATCCGGCA+AGG + chr4_2:74475801-74475820 None:intergenic 40.0%
CCGACTAAACTCAATGAATC+CGG + chr4_2:74475806-74475825 None:intergenic 40.0%
CCGGATTCATTGAGTTTAGT+CGG - chr4_2:74475803-74475822 Msa0622100:intron 40.0%
AGCCCAGAATAACAATAGAG+GGG + chr4_2:74475864-74475883 None:intergenic 40.0%
GAGCCCAGAATAACAATAGA+GGG + chr4_2:74475865-74475884 None:intergenic 40.0%
TGAGCCCAGAATAACAATAG+AGG + chr4_2:74475866-74475885 None:intergenic 40.0%
TTCAACAAGGATCCTAGAGT+CGG + chr4_2:74475996-74476015 None:intergenic 40.0%
AGGTCAAGTTTACAAGGCAT+AGG + chr4_2:74476031-74476050 None:intergenic 40.0%
ATGCCTTGTAAACTTGACCT+TGG - chr4_2:74476031-74476050 Msa0622100:CDS 40.0%
TAAGCAGACATATAGAGGAG+AGG + chr4_2:74476067-74476086 None:intergenic 40.0%
! TGCTTACGTCGAAACGTTTT+TGG - chr4_2:74476081-74476100 Msa0622100:CDS 40.0%
! GCTTACGTCGAAACGTTTTT+GGG - chr4_2:74476082-74476101 Msa0622100:CDS 40.0%
CAAGGGTTTGTCTTCGATTG+GGG + chr4_2:74474038-74474057 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG + chr4_2:74474055-74474074 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG + chr4_2:74474056-74474075 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG - chr4_2:74474060-74474079 Msa0622100:three_prime_UTR 45.0%
GCCATATGAGAGAAGCGATT+TGG + chr4_2:74474064-74474083 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG + chr4_2:74474089-74474108 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG + chr4_2:74474266-74474285 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG - chr4_2:74474718-74474737 Msa0622100:exon 45.0%
AAGCACAGCGTAAAAGAGGT+AGG - chr4_2:74474722-74474741 Msa0622100:CDS 45.0%
CCGTACATTGCCTACCATAT+TGG - chr4_2:74474756-74474775 Msa0622100:CDS 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG - chr4_2:74475061-74475080 Msa0622100:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG - chr4_2:74475069-74475088 Msa0622100:CDS 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG - chr4_2:74475128-74475147 Msa0622100:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG - chr4_2:74475135-74475154 Msa0622100:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG + chr4_2:74475199-74475218 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG + chr4_2:74475200-74475219 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG - chr4_2:74475313-74475332 Msa0622100:intron 45.0%
ATGAATCCGGCAAGGTCAAA+AGG + chr4_2:74475793-74475812 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG + chr4_2:74476072-74476091 None:intergenic 45.0%
CAAGGGTTTGTCTTCGATTG+GGG + chr4_2:74474038-74474057 None:intergenic 45.0%
! GAGAAGCGATTTGGGAACAA+GGG + chr4_2:74474055-74474074 None:intergenic 45.0%
! AGAGAAGCGATTTGGGAACA+AGG + chr4_2:74474056-74474075 None:intergenic 45.0%
CCCAAATCGCTTCTCTCATA+TGG - chr4_2:74474060-74474079 Msa0622100:three_prime_UTR 45.0%
GCCATATGAGAGAAGCGATT+TGG + chr4_2:74474064-74474083 None:intergenic 45.0%
GGAAGAATCAGAAGAGAGAG+AGG + chr4_2:74474089-74474108 None:intergenic 45.0%
CTACCTGGATGAATCAGAGA+GGG + chr4_2:74474266-74474285 None:intergenic 45.0%
GCATAAGCACAGCGTAAAAG+AGG - chr4_2:74474718-74474737 Msa0622100:exon 45.0%
AAGCACAGCGTAAAAGAGGT+AGG - chr4_2:74474722-74474741 Msa0622100:CDS 45.0%
CCGTACATTGCCTACCATAT+TGG - chr4_2:74474756-74474775 Msa0622100:CDS 45.0%
!! TGGCTCTTTGAAATTGGAGC+TGG - chr4_2:74475061-74475080 Msa0622100:CDS 45.0%
!! TGAAATTGGAGCTGGTTCTG+TGG - chr4_2:74475069-74475088 Msa0622100:CDS 45.0%
! TTTCTTGGTCGGGTTTTTCC+TGG - chr4_2:74475128-74475147 Msa0622100:intron 45.0%
! GTCGGGTTTTTCCTGGAAAT+GGG - chr4_2:74475135-74475154 Msa0622100:intron 45.0%
TAACCTTGGAAAGCTGCACA+GGG + chr4_2:74475199-74475218 None:intergenic 45.0%
ATAACCTTGGAAAGCTGCAC+AGG + chr4_2:74475200-74475219 None:intergenic 45.0%
TTAGGGCGCAACAAAGATGA+TGG - chr4_2:74475313-74475332 Msa0622100:intron 45.0%
ATGAATCCGGCAAGGTCAAA+AGG + chr4_2:74475793-74475812 None:intergenic 45.0%
CGACGTAAGCAGACATATAG+AGG + chr4_2:74476072-74476091 None:intergenic 45.0%
! TAAGGGAGTCCTTGTTGTCG+CGG + chr4_2:74474150-74474169 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG + chr4_2:74474228-74474247 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG + chr4_2:74474267-74474286 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG - chr4_2:74474264-74474283 Msa0622100:three_prime_UTR 50.0%
CATACATGAAGTTGGGGGGA+GGG + chr4_2:74474975-74474994 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG + chr4_2:74474976-74474995 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG - chr4_2:74475099-74475118 Msa0622100:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG - chr4_2:74475134-74475153 Msa0622100:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG + chr4_2:74475176-74475195 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG - chr4_2:74475784-74475803 Msa0622100:intron 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG - chr4_2:74475981-74476000 Msa0622100:intron 50.0%
AGGATCCTAGAGTCGGTACT+TGG + chr4_2:74475989-74476008 None:intergenic 50.0%
! TAAGGGAGTCCTTGTTGTCG+CGG + chr4_2:74474150-74474169 None:intergenic 50.0%
AATCGGAATCGGAGGAGTAG+CGG + chr4_2:74474228-74474247 None:intergenic 50.0%
CCTACCTGGATGAATCAGAG+AGG + chr4_2:74474267-74474286 None:intergenic 50.0%
CCTCTCTGATTCATCCAGGT+AGG - chr4_2:74474264-74474283 Msa0622100:three_prime_UTR 50.0%
CATACATGAAGTTGGGGGGA+GGG + chr4_2:74474975-74474994 None:intergenic 50.0%
ACATACATGAAGTTGGGGGG+AGG + chr4_2:74474976-74474995 None:intergenic 50.0%
!! TGGCGCTTGATTGACTTGCT+TGG - chr4_2:74475099-74475118 Msa0622100:intron 50.0%
! GGTCGGGTTTTTCCTGGAAA+TGG - chr4_2:74475134-74475153 Msa0622100:intron 50.0%
CTGCTGCTCCTTTCACCATT+CGG + chr4_2:74475176-74475195 None:intergenic 50.0%
! TGACGACCTTTTGACCTTGC+CGG - chr4_2:74475784-74475803 Msa0622100:intron 50.0%
!! TTGTGCCAAGTACCGACTCT+AGG - chr4_2:74475981-74476000 Msa0622100:intron 50.0%
AGGATCCTAGAGTCGGTACT+TGG + chr4_2:74475989-74476008 None:intergenic 50.0%
! AGTCCTTGTTGTCGCGGTCT+CGG + chr4_2:74474144-74474163 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG + chr4_2:74474263-74474282 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG - chr4_2:74474260-74474279 Msa0622100:three_prime_UTR 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG - chr4_2:74475079-74475098 Msa0622100:CDS 55.0%
CAATTTAGAGGGGTGGGGTG+CGG - chr4_2:74475654-74475673 Msa0622100:intron 55.0%
GGAGAGGTTGCTCCATTCCA+AGG + chr4_2:74476051-74476070 None:intergenic 55.0%
! AGTCCTTGTTGTCGCGGTCT+CGG + chr4_2:74474144-74474163 None:intergenic 55.0%
CCTGGATGAATCAGAGAGGG+AGG + chr4_2:74474263-74474282 None:intergenic 55.0%
CCTCCCTCTCTGATTCATCC+AGG - chr4_2:74474260-74474279 Msa0622100:three_prime_UTR 55.0%
!! GCTGGTTCTGTGGCATGTCT+TGG - chr4_2:74475079-74475098 Msa0622100:CDS 55.0%
CAATTTAGAGGGGTGGGGTG+CGG - chr4_2:74475654-74475673 Msa0622100:intron 55.0%
GGAGAGGTTGCTCCATTCCA+AGG + chr4_2:74476051-74476070 None:intergenic 55.0%
CAGCCCTGTGCAGCTTTCCA+AGG - chr4_2:74475193-74475212 Msa0622100:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG - chr4_2:74475336-74475355 Msa0622100:intron 60.0%
CAGTGCCGTATCGGGCAAGA+AGG - chr4_2:74475345-74475364 Msa0622100:intron 60.0%
CAGCCCTGTGCAGCTTTCCA+AGG - chr4_2:74475193-74475212 Msa0622100:CDS 60.0%
TGTCCGTCGCAGTGCCGTAT+CGG - chr4_2:74475336-74475355 Msa0622100:intron 60.0%
CAGTGCCGTATCGGGCAAGA+AGG - chr4_2:74475345-74475364 Msa0622100:intron 60.0%
GTGACGCTTGCGACGGTGAG+AGG + chr4_2:74474110-74474129 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG + chr4_2:74474117-74474136 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG + chr4_2:74474141-74474160 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG - chr4_2:74475337-74475356 Msa0622100:intron 65.0%
TGCCCGATACGGCACTGCGA+CGG + chr4_2:74475342-74475361 None:intergenic 65.0%
GTGACGCTTGCGACGGTGAG+AGG + chr4_2:74474110-74474129 None:intergenic 65.0%
! TGCGGTGGTGACGCTTGCGA+CGG + chr4_2:74474117-74474136 None:intergenic 65.0%
! CCTTGTTGTCGCGGTCTCGG+CGG + chr4_2:74474141-74474160 None:intergenic 65.0%
GTCCGTCGCAGTGCCGTATC+GGG - chr4_2:74475337-74475356 Msa0622100:intron 65.0%
TGCCCGATACGGCACTGCGA+CGG + chr4_2:74475342-74475361 None:intergenic 65.0%
CCGCCGAGACCGCGACAACA+AGG - chr4_2:74474138-74474157 Msa0622100:three_prime_UTR 70.0%
CCGCCGAGACCGCGACAACA+AGG - chr4_2:74474138-74474157 Msa0622100:three_prime_UTR 70.0%
TGTCGCGGTCTCGGCGGCTG+CGG + chr4_2:74474135-74474154 None:intergenic 75.0%
TGTCGCGGTCTCGGCGGCTG+CGG + chr4_2:74474135-74474154 None:intergenic 75.0%
! CGCGGTCTCGGCGGCTGCGG+TGG + chr4_2:74474132-74474151 None:intergenic 85.0%
! CGCGGTCTCGGCGGCTGCGG+TGG + chr4_2:74474132-74474151 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74473981 74476287 74473981 ID=Msa0622100;Name=Msa0622100
chr4_2 mRNA 74473981 74476287 74473981 ID=Msa0622100-mRNA-1;Parent=Msa0622100;Name=Msa0622100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=98|0.66|0.85|1|1|1|7|739|203
chr4_2 exon 74473981 74474812 74473981 ID=Msa0622100-mRNA-1:exon:22418;Parent=Msa0622100-mRNA-1
chr4_2 exon 74474902 74474958 74474902 ID=Msa0622100-mRNA-1:exon:22417;Parent=Msa0622100-mRNA-1
chr4_2 exon 74475054 74475098 74475054 ID=Msa0622100-mRNA-1:exon:22416;Parent=Msa0622100-mRNA-1
chr4_2 exon 74475186 74475257 74475186 ID=Msa0622100-mRNA-1:exon:22415;Parent=Msa0622100-mRNA-1
chr4_2 exon 74475529 74475591 74475529 ID=Msa0622100-mRNA-1:exon:22414;Parent=Msa0622100-mRNA-1
chr4_2 exon 74475670 74475748 74475670 ID=Msa0622100-mRNA-1:exon:22413;Parent=Msa0622100-mRNA-1
chr4_2 exon 74475987 74476287 74475987 ID=Msa0622100-mRNA-1:exon:22412;Parent=Msa0622100-mRNA-1
chr4_2 five_prime_UTR 74476190 74476287 74476190 ID=Msa0622100-mRNA-1:five_prime_utr;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74475987 74476189 74475987 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74475670 74475748 74475670 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74475529 74475591 74475529 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74475186 74475257 74475186 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74475054 74475098 74475054 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74474902 74474958 74474902 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 CDS 74474720 74474812 74474720 ID=Msa0622100-mRNA-1:cds;Parent=Msa0622100-mRNA-1
chr4_2 three_prime_UTR 74473981 74474719 74473981 ID=Msa0622100-mRNA-1:three_prime_utr;Parent=Msa0622100-mRNA-1
Gene Sequence

>Msa0622100

ATGGCGTCCTCTCTCTCTTCTGATTCTTCCTCTCACCGTCGCAAGCGTCACCACCGCAGCCGCCGAGACCGCGACAACAAGGACTCCCTTAAGATCCGAAAGAAATCCAAATCTCACTCTCACACAAAACGACGTCGCAAACATCACCGCTACTCCTCCGATTCCGATTCTTATTCTTCTTCCTCCCTCTCTGATTCATCCAGAAGTGAGAGTTCTTCTGATAGTGAGCATGAAACATCTCATCGTTCAAAGAAGCATAAAAAGAGCGATAAACCAAAGAAGAATAAGGAAAAGGAGCCAAGTAAAAGTCATCGTCATAAACGGCATAAGCACAGCGTAAAAGAGATTCCAGTCTTAGATGCTTATGATACTTCCTTCTTTATTTTATTATGTCTTGGCTCTTTGAAATTGGAGCTGAAGCCGAATGGTGAAAGGAGCAGCAGCCCTGTGCAGCTTTCCAAGTTTTTAGGGCGCAACAAAGATGATGGTGTCCGTCGCAGTGCCGTATCGGGCAAGAAGATTCTTCTCAAACTTGATAAAACAAAGGAAGATAAGGAGGCCGAGAGCAAGAGAAATGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAG
Protein sequence

>Msa0622100

MASSLSSDSSSHRRKRHHRSRRDRDNKDSLKIRKKSKSHSHTKRRRKHHRYSSDSDSYSSSSLSDSSRSESSSDSEHETSHRSKKHKKSDKPKKNKEKEPSKSHRHKRHKHSVKEIPVLDAYDTSFFILLCLGSLKLELKPNGERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNELLNFLNASFD*