AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526080 MtrunA17_Chr7g0272061 79.045 377 22 2 1 320 1 377 0.0 597
Msa0526080 MtrunA17_Chr1g0192421 68.079 354 61 3 1 305 1 351 9.74e-166 465
Msa0526080 MtrunA17_Chr4g0067711 54.520 354 111 2 1 305 1 353 4.66e-140 400
Msa0526080 MtrunA17_Chr2g0295401 54.930 355 109 3 1 305 1 354 7.90e-139 397
Msa0526080 MtrunA17_Chr7g0243571 40.491 326 129 4 52 314 53 376 4.44e-84 260
Msa0526080 MtrunA17_Chr4g0022171 40.432 324 129 4 52 313 58 379 2.34e-82 256
Msa0526080 MtrunA17_Chr2g0324061 40.752 319 126 4 55 312 55 371 5.75e-79 248
Msa0526080 MtrunA17_Chr4g0004971 40.594 303 126 3 56 305 43 344 1.26e-78 243
Msa0526080 MtrunA17_Chr7g0249421 58.659 179 73 1 126 304 207 384 5.68e-65 213
Msa0526080 MtrunA17_Chr7g0249421 59.155 71 29 0 52 122 57 127 2.19e-24 103
Msa0526080 MtrunA17_Chr7g0221691 57.222 180 75 2 126 305 232 409 4.29e-63 206
Msa0526080 MtrunA17_Chr7g0221691 45.977 87 47 0 50 136 88 174 1.38e-20 91.7
Msa0526080 MtrunA17_Chr8g0342431 59.412 170 66 3 136 305 207 373 3.90e-61 200
Msa0526080 MtrunA17_Chr8g0342431 52.632 76 36 0 50 125 45 120 4.45e-22 95.9
Msa0526080 MtrunA17_Chr1g0151781 37.627 295 132 4 60 305 38 329 1.26e-57 189
Msa0526080 MtrunA17_Chr6g0486661 30.508 295 150 8 62 305 90 380 5.33e-30 120
Msa0526080 MtrunA17_Chr4g0066371 27.636 275 150 7 73 302 68 338 6.83e-25 103
Msa0526080 MtrunA17_Chr2g0317021 35.366 246 105 11 87 304 113 332 6.53e-23 97.1
Msa0526080 MtrunA17_Chr2g0286951 28.289 304 161 10 57 307 45 344 1.24e-22 97.4
Msa0526080 MtrunA17_Chr8g0360351 33.074 257 116 12 79 305 52 282 3.67e-22 94.0
Msa0526080 MtrunA17_Chr3g0136711 31.336 217 102 7 93 281 67 264 9.72e-22 93.2
Msa0526080 MtrunA17_Chr2g0279151 39.881 168 77 7 135 302 135 278 1.35e-21 92.4
Msa0526080 MtrunA17_Chr1g0150451 30.876 217 103 6 93 281 110 307 2.25e-21 92.8
Msa0526080 MtrunA17_Chr1g0212961 28.309 272 145 10 39 281 71 321 1.94e-20 90.5
Msa0526080 MtrunA17_Chr6g0483411 35.165 182 87 5 136 304 155 318 3.30e-20 89.4
Msa0526080 MtrunA17_Chr5g0426141 39.286 168 78 7 135 302 136 279 6.09e-20 87.8
Msa0526080 MtrunA17_Chr3g0115851 40.120 167 76 7 136 302 137 279 8.37e-20 87.4
Msa0526080 MtrunA17_Chr4g0050381 37.952 166 79 7 137 302 133 274 3.79e-19 85.9
Msa0526080 MtrunA17_Chr5g0396731 42.308 130 58 4 137 266 188 300 6.08e-19 86.3
Msa0526080 MtrunA17_Chr4g0051661 29.918 244 118 12 88 304 180 397 4.80e-18 84.0
Msa0526080 MtrunA17_Chr3g0105371 31.655 278 135 12 62 308 89 342 4.90e-18 83.6
Msa0526080 MtrunA17_Chr3g0126511 28.090 267 136 10 65 302 99 338 5.43e-18 83.6
Msa0526080 MtrunA17_Chr3g0112291 28.339 307 157 10 3 264 33 321 2.42e-17 82.0
Msa0526080 MtrunA17_Chr5g0430481 28.623 276 154 11 54 304 117 374 6.96e-16 77.4
Msa0526080 MtrunA17_Chr5g0435721 39.844 128 60 4 137 264 309 419 8.35e-16 77.8
Msa0526080 MtrunA17_Chr3g0105351 30.657 274 135 12 62 304 65 314 1.22e-15 76.3
Msa0526080 MtrunA17_Chr4g0070871 32.075 212 86 8 91 263 253 445 1.44e-15 77.0
Msa0526080 MtrunA17_Chr1g0171571 31.461 178 99 7 136 312 497 652 5.38e-15 75.5
Msa0526080 MtrunA17_Chr8g0371321 29.665 209 95 10 136 304 157 353 8.54e-15 74.3
Msa0526080 MtrunA17_Chr1g0158781 40.164 122 56 4 143 264 226 330 1.08e-14 73.9
Msa0526080 MtrunA17_Chr3g0135961 29.200 250 105 10 59 263 262 484 1.61e-14 73.9
Msa0526080 MtrunA17_Chr1g0213351 27.645 293 129 13 91 310 80 362 4.08e-14 72.4
Msa0526080 MtrunA17_Chr1g0211251 32.727 165 77 7 138 278 161 315 1.69e-13 70.5
Msa0526080 MtrunA17_Chr5g0407161 29.808 208 89 7 91 264 124 308 3.97e-13 69.3
Msa0526080 MtrunA17_Chr3g0138281 26.923 260 117 12 91 307 121 350 4.86e-13 69.3
Msa0526080 MtrunA17_Chr3g0089711 28.044 271 123 12 88 299 65 322 6.56e-13 68.6
Msa0526080 MtrunA17_Chr3g0089721 28.044 271 123 12 88 299 65 322 8.57e-13 68.6
Msa0526080 MtrunA17_Chr7g0256751 27.668 253 114 12 88 282 66 307 9.16e-13 68.6
Msa0526080 MtrunA17_Chr4g0065141 25.391 256 140 10 85 307 118 355 1.09e-12 68.2
Msa0526080 MtrunA17_Chr1g0150781 37.600 125 61 4 139 263 381 488 2.93e-12 67.4
Msa0526080 MtrunA17_Chr3g0089691 31.720 186 93 8 137 299 62 236 4.08e-12 65.9
Msa0526080 MtrunA17_Chr4g0067301 32.051 156 73 4 135 266 286 432 5.65e-12 66.2
Msa0526080 MtrunA17_Chr8g0389921 29.327 208 93 6 91 263 198 386 1.00e-11 65.5
Msa0526080 MtrunA17_Chr3g0144111 27.273 231 125 8 91 306 27 229 1.12e-11 63.9
Msa0526080 MtrunA17_Chr1g0194191 32.090 134 67 5 136 264 198 312 3.91e-11 63.5
Msa0526080 MtrunA17_Chr1g0150071 30.597 134 66 4 139 264 173 287 6.92e-11 62.4
Msa0526080 MtrunA17_Chr1g0209451 28.638 213 117 11 111 307 107 300 8.81e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526080 AT3G05640.2 65.812 351 73 3 1 305 1 350 4.24e-166 466
Msa0526080 AT3G05640.1 65.812 351 73 3 1 305 1 350 4.24e-166 466
Msa0526080 AT3G05640.3 65.812 351 73 3 1 305 1 350 4.24e-166 466
Msa0526080 AT5G27930.1 62.712 354 80 4 1 303 1 353 8.27e-161 454
Msa0526080 AT5G27930.2 62.712 354 80 4 1 303 1 353 8.27e-161 454
Msa0526080 AT5G27930.3 62.252 302 62 4 1 251 1 301 1.56e-132 380
Msa0526080 AT3G16800.2 52.000 350 124 3 1 306 1 350 1.18e-123 358
Msa0526080 AT3G16800.1 52.000 350 124 3 1 306 1 350 1.18e-123 358
Msa0526080 AT3G16800.3 52.000 350 124 3 1 306 1 350 1.18e-123 358
Msa0526080 AT3G16800.4 54.118 255 75 2 94 306 1 255 5.47e-92 275
Msa0526080 AT3G16800.6 54.118 255 75 2 94 306 1 255 5.47e-92 275
Msa0526080 AT1G03590.1 40.968 310 121 4 55 304 55 362 1.60e-77 244
Msa0526080 AT5G01700.2 42.071 309 128 5 52 311 39 345 1.73e-75 236
Msa0526080 AT5G01700.1 43.051 295 117 5 66 311 4 296 7.29e-75 233
Msa0526080 AT4G32950.1 42.105 285 131 4 59 311 41 323 8.26e-71 223
Msa0526080 AT1G79630.6 56.425 179 77 1 127 305 113 290 8.68e-69 220
Msa0526080 AT1G79630.3 56.425 179 77 1 127 305 113 290 8.68e-69 220
Msa0526080 AT1G79630.4 56.425 179 77 1 127 305 113 290 8.68e-69 220
Msa0526080 AT1G79630.5 56.425 179 77 1 127 305 113 290 8.68e-69 220
Msa0526080 AT1G79630.2 56.111 180 78 1 126 305 152 330 6.23e-68 219
Msa0526080 AT1G79630.2 50.000 52 26 0 81 132 18 69 2.69e-11 64.7
Msa0526080 AT1G79630.7 56.111 180 78 1 126 305 152 330 6.23e-68 219
Msa0526080 AT1G79630.7 50.000 52 26 0 81 132 18 69 2.69e-11 64.7
Msa0526080 AT1G79630.8 56.111 180 78 1 126 305 218 396 1.89e-67 219
Msa0526080 AT1G79630.8 45.783 83 45 0 50 132 53 135 3.23e-20 91.3
Msa0526080 AT1G79630.1 56.111 180 78 1 126 305 222 400 2.23e-67 219
Msa0526080 AT1G79630.1 45.783 83 45 0 50 132 57 139 2.61e-20 91.7
Msa0526080 AT1G16220.1 55.000 180 80 1 126 305 199 377 2.97e-65 213
Msa0526080 AT1G16220.1 45.122 82 45 0 50 131 54 135 1.53e-19 89.4
Msa0526080 AT5G26010.1 41.781 292 129 5 58 310 41 330 2.98e-64 206
Msa0526080 AT3G02750.2 56.983 179 76 1 126 304 216 393 6.15e-63 207
Msa0526080 AT3G02750.2 39.450 109 63 1 14 122 21 126 3.81e-23 99.8
Msa0526080 AT3G02750.1 56.983 179 76 1 126 304 216 393 6.15e-63 207
Msa0526080 AT3G02750.1 39.450 109 63 1 14 122 21 126 3.81e-23 99.8
Msa0526080 AT5G36250.1 50.838 179 87 1 126 304 207 384 2.87e-60 199
Msa0526080 AT5G36250.1 44.444 108 51 2 50 148 57 164 5.86e-22 96.3
Msa0526080 AT4G03415.1 53.631 179 82 1 135 313 204 381 8.12e-60 199
Msa0526080 AT4G03415.1 47.826 69 35 1 63 131 70 137 2.58e-16 79.7
Msa0526080 AT4G03415.3 53.631 179 82 1 135 313 204 381 8.12e-60 199
Msa0526080 AT4G03415.3 47.826 69 35 1 63 131 70 137 2.58e-16 79.7
Msa0526080 AT4G03415.2 53.631 179 82 1 135 313 204 381 8.12e-60 199
Msa0526080 AT4G03415.2 47.826 69 35 1 63 131 70 137 2.58e-16 79.7
Msa0526080 AT5G36250.2 47.668 193 86 2 126 304 207 398 1.43e-56 190
Msa0526080 AT5G36250.2 44.444 108 51 2 50 148 57 164 8.70e-22 95.9
Msa0526080 AT3G16800.5 45.205 219 76 3 1 175 1 219 3.76e-56 182
Msa0526080 AT3G02750.3 47.664 214 76 2 126 304 216 428 8.65e-56 189
Msa0526080 AT3G02750.3 37.391 115 69 1 14 128 21 132 8.47e-23 99.0
Msa0526080 AT4G32950.2 43.111 225 94 4 59 251 41 263 2.78e-53 176
Msa0526080 AT5G36250.3 53.521 142 64 2 126 266 207 347 3.91e-45 157
Msa0526080 AT5G36250.3 44.037 109 52 2 50 149 57 165 4.41e-22 95.5
Msa0526080 AT2G20050.2 31.058 293 144 9 62 302 109 395 3.81e-30 121
Msa0526080 AT2G20050.1 31.058 293 144 9 62 302 109 395 4.52e-30 120
Msa0526080 AT2G20630.1 33.607 244 108 10 87 302 59 276 1.03e-24 101
Msa0526080 AT3G06270.1 29.304 273 137 8 50 269 40 309 3.15e-24 101
Msa0526080 AT2G20630.2 33.333 252 112 11 88 309 60 285 3.23e-24 100
Msa0526080 AT4G28400.3 33.198 247 111 12 87 305 41 261 4.55e-24 99.4
Msa0526080 AT4G28400.1 33.198 247 111 12 87 305 63 283 5.42e-24 99.4
Msa0526080 AT4G31750.2 31.111 225 105 8 91 287 64 266 2.26e-21 92.8
Msa0526080 AT4G31750.1 31.111 225 105 8 91 287 64 266 2.41e-21 92.8
Msa0526080 AT4G31750.3 31.111 225 105 8 91 287 64 266 2.41e-21 92.8
Msa0526080 AT5G24940.1 31.557 244 105 9 91 302 64 277 9.06e-21 92.8
Msa0526080 AT5G10740.1 31.557 244 105 9 91 302 64 277 1.28e-20 91.3
Msa0526080 AT5G10740.2 31.557 244 105 9 91 302 64 277 1.28e-20 91.3
Msa0526080 AT1G34750.2 32.547 212 105 9 107 304 94 281 7.78e-19 85.1
Msa0526080 AT1G34750.1 32.547 212 105 9 107 304 94 281 7.78e-19 85.1
Msa0526080 AT1G34750.3 32.547 212 105 9 107 304 94 281 7.78e-19 85.1
Msa0526080 AT5G59220.1 31.776 214 87 7 91 264 148 342 1.01e-18 86.7
Msa0526080 AT1G78200.5 31.746 252 118 12 80 302 9 235 1.78e-18 83.6
Msa0526080 AT1G78200.4 31.746 252 118 12 80 302 9 235 1.78e-18 83.6
Msa0526080 AT5G53140.1 27.907 301 168 10 9 281 52 331 1.88e-18 85.9
Msa0526080 AT5G53140.2 27.907 301 168 10 9 281 52 331 1.88e-18 85.9
Msa0526080 AT1G78200.1 31.746 252 118 12 80 302 54 280 2.51e-18 84.0
Msa0526080 AT1G78200.3 31.746 252 118 12 80 302 54 280 2.51e-18 84.0
Msa0526080 AT1G78200.2 31.746 252 118 12 80 302 54 280 2.51e-18 84.0
Msa0526080 AT3G15260.2 37.952 166 79 7 137 302 145 286 3.39e-18 83.6
Msa0526080 AT3G15260.1 37.952 166 79 7 137 302 145 286 3.39e-18 83.6
Msa0526080 AT1G07160.1 30.325 277 135 13 62 304 124 376 7.04e-18 84.0
Msa0526080 AT1G43900.1 29.508 244 122 9 65 279 128 350 1.25e-17 83.2
Msa0526080 AT1G07430.1 40.625 128 59 3 137 264 244 354 1.32e-17 83.6
Msa0526080 AT2G40180.1 29.371 286 139 13 58 305 126 386 1.35e-17 83.2
Msa0526080 AT2G25620.1 28.462 260 131 11 91 315 128 367 1.02e-16 80.5
Msa0526080 AT2G25620.2 28.462 260 131 11 91 315 128 367 1.02e-16 80.5
Msa0526080 AT2G34740.1 27.652 264 138 12 67 302 94 332 6.39e-16 77.8
Msa0526080 AT3G55050.1 31.250 208 89 10 139 305 165 359 7.27e-16 78.2
Msa0526080 AT3G55050.2 31.250 208 89 10 139 305 165 359 7.27e-16 78.2
Msa0526080 AT3G51370.2 29.952 207 97 9 136 304 72 268 1.04e-15 76.6
Msa0526080 AT3G11410.1 39.370 127 60 4 137 263 232 341 1.16e-15 77.4
Msa0526080 AT2G30020.1 28.623 276 140 12 62 304 141 392 1.19e-15 77.4
Msa0526080 AT3G51370.1 29.952 207 97 8 136 304 157 353 1.90e-15 76.6
Msa0526080 AT3G51370.3 29.952 207 97 8 136 304 157 353 1.90e-15 76.6
Msa0526080 AT4G26080.1 31.532 222 97 8 78 263 159 361 2.06e-15 77.0
Msa0526080 AT1G22280.1 33.929 168 87 7 135 302 135 278 3.96e-15 74.7
Msa0526080 AT1G22280.3 34.524 168 86 8 135 302 141 284 4.63e-15 74.7
Msa0526080 AT5G57050.2 31.754 211 87 8 91 263 120 311 2.75e-14 73.2
Msa0526080 AT5G57050.1 31.754 211 87 8 91 263 160 351 2.83e-14 73.6
Msa0526080 AT3G51470.2 26.115 314 153 13 50 315 12 294 3.63e-14 72.4
Msa0526080 AT1G67820.2 29.528 254 132 10 49 275 75 308 5.27e-14 72.8
Msa0526080 AT3G51470.1 26.115 314 153 13 50 315 56 338 5.56e-14 72.4
Msa0526080 AT1G67820.1 29.528 254 132 10 49 275 111 344 7.02e-14 72.4
Msa0526080 AT1G18030.1 30.387 181 95 7 137 304 186 348 1.89e-13 70.5
Msa0526080 AT1G47380.1 30.137 219 120 11 112 315 104 304 3.87e-13 70.1
Msa0526080 AT4G28400.2 31.746 189 82 10 94 254 70 239 4.75e-13 68.6
Msa0526080 AT5G66080.2 29.412 204 96 9 139 304 59 252 4.99e-13 68.6
Msa0526080 AT1G17550.1 37.903 124 60 3 139 262 339 445 5.22e-13 69.7
Msa0526080 AT1G17550.2 37.903 124 60 3 139 262 339 445 5.22e-13 69.7
Msa0526080 AT3G62260.3 30.319 188 103 8 119 300 90 255 5.75e-13 68.6
Msa0526080 AT5G51760.2 40.000 130 58 5 134 263 212 321 5.96e-13 69.3
Msa0526080 AT5G51760.1 40.000 130 58 5 134 263 242 351 6.62e-13 69.3
Msa0526080 AT5G66080.1 29.412 204 96 9 139 304 163 356 7.41e-13 68.9
Msa0526080 AT5G02760.1 31.646 158 71 6 139 271 153 298 7.44e-13 68.9
Msa0526080 AT3G62260.1 29.474 190 106 7 119 302 179 346 1.38e-12 68.2
Msa0526080 AT3G62260.2 29.474 190 106 7 119 302 180 347 1.47e-12 68.2
Msa0526080 AT3G12620.2 30.882 204 93 9 139 304 164 357 1.73e-12 67.8
Msa0526080 AT3G12620.1 30.882 204 93 9 139 304 164 357 1.73e-12 67.8
Msa0526080 AT2G33700.1 27.106 273 127 11 39 263 58 306 1.88e-12 67.8
Msa0526080 AT4G38520.2 31.250 176 85 8 139 289 162 326 2.13e-12 67.8
Msa0526080 AT4G38520.1 31.250 176 85 8 139 289 162 326 2.13e-12 67.8
Msa0526080 AT1G72770.4 39.850 133 47 6 139 263 339 446 2.44e-12 67.8
Msa0526080 AT1G72770.1 39.850 133 47 6 139 263 339 446 2.44e-12 67.8
Msa0526080 AT1G72770.3 39.850 133 47 6 139 263 339 446 2.44e-12 67.8
Msa0526080 AT3G17250.1 24.074 270 135 7 89 312 156 401 2.64e-12 67.4
Msa0526080 AT1G48040.1 31.522 184 97 7 136 312 197 358 3.13e-12 67.0
Msa0526080 AT2G34740.2 26.271 236 127 11 67 273 108 325 3.75e-12 66.6
Msa0526080 AT2G34740.3 26.271 236 127 11 67 273 90 307 4.74e-12 66.2
Msa0526080 AT1G18030.2 33.071 127 64 4 137 254 186 300 6.31e-12 65.9
Msa0526080 AT2G40860.4 30.286 175 99 7 139 312 406 558 8.52e-12 66.2
Msa0526080 AT2G40860.1 30.286 175 99 7 139 312 504 656 9.07e-12 66.2
Msa0526080 AT5G06750.3 25.758 264 139 10 90 300 81 340 1.43e-11 65.1
Msa0526080 AT5G06750.1 25.758 264 139 10 90 300 81 340 1.43e-11 65.1
Msa0526080 AT1G68410.4 28.767 219 123 10 112 315 113 313 2.38e-11 64.7
Msa0526080 AT1G68410.3 28.767 219 123 10 112 315 113 313 2.38e-11 64.7
Msa0526080 AT1G68410.1 28.767 219 123 10 112 315 113 313 2.38e-11 64.7
Msa0526080 AT1G68410.2 28.767 219 123 10 112 315 113 313 2.38e-11 64.7
Msa0526080 AT1G09160.2 29.268 205 94 10 93 260 70 260 3.30e-11 64.3
Msa0526080 AT1G09160.1 29.268 205 94 10 93 260 70 260 3.30e-11 64.3
Msa0526080 AT5G06750.2 28.729 181 109 6 138 300 80 258 4.45e-11 63.2
Msa0526080 AT1G34750.4 32.099 162 79 8 107 254 94 238 8.83e-11 61.6
Msa0526080 AT2G25070.1 30.597 134 66 4 139 264 173 287 9.89e-11 62.4
Msa0526080 AT2G25070.2 30.597 134 66 4 139 264 173 287 9.89e-11 62.4

Find 91 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATTAAATTATAGGAATT+TGG 0.150752 3_4:+79784754 Msa0526080:intron
GATTATTGTATTAAAGATTA+TGG 0.199525 3_4:+79785875 Msa0526080:CDS
GGTTCCTTTCTGACCTCTTT+TGG 0.202885 3_4:-79784406 None:intergenic
CTTGCCATGTCAAGGGCTTT+TGG 0.208056 3_4:+79785851 Msa0526080:CDS
CATTGACTCTCTTACTCTTT+TGG 0.217341 3_4:-79784842 None:intergenic
AAGTACTAACGAGGTAAATT+TGG 0.252923 3_4:-79785653 None:intergenic
ATCCTCTATGTTCAATGGTT+TGG 0.312680 3_4:+79784224 Msa0526080:CDS
CGAGAAAGAAAAGATGTAAA+AGG 0.318796 3_4:-79783070 None:intergenic
GTCTATTTAACAGTTTCAAT+TGG 0.327269 3_4:-79786654 None:intergenic
AATGTCTACTGCTTCTTGAT+TGG 0.329653 3_4:-79786478 None:intergenic
TCTGGCACTATTAATGTTGA+TGG 0.338334 3_4:+79784357 Msa0526080:CDS
GCTATCTTGCTCAGGGGAAA+TGG 0.343840 3_4:-79786631 None:intergenic
TCTCAGATTCACCTTCATTA+AGG 0.358244 3_4:+79783154 Msa0526080:five_prime_UTR
CATTTATCCTCTATGTTCAA+TGG 0.363846 3_4:+79784219 Msa0526080:CDS
ATATTCTGCGGTATATTTGA+TGG 0.364778 3_4:+79784793 Msa0526080:CDS
ATATTCCTCTGAGTTACTTC+AGG 0.378333 3_4:-79785911 None:intergenic
ATCAGACGATGATGGAAGTT+TGG 0.389577 3_4:+79785601 Msa0526080:CDS
TCACAAAATTGAGGATTTGA+TGG 0.399038 3_4:+79784194 Msa0526080:exon
CAAGGTCTTTGCTATGCAAT+TGG 0.407044 3_4:+79784866 Msa0526080:CDS
TTTGTTGTGCTTGCCACTGA+TGG 0.408199 3_4:+79785950 Msa0526080:CDS
TCCGTAGGCCATAAATAAAT+AGG 0.409749 3_4:+79782981 None:intergenic
CACCATGCAACAGTCTTGAT+TGG 0.411872 3_4:-79784427 None:intergenic
TCAATTGGGCTATCTTGCTC+AGG 0.413365 3_4:-79786639 None:intergenic
TATTTGATGGACACGGGCCA+TGG 0.420048 3_4:+79784806 Msa0526080:CDS
CTATCTTGCTCAGGGGAAAT+GGG 0.431506 3_4:-79786630 None:intergenic
ATATGACCTTTGGTCCAGTT+AGG 0.431557 3_4:+79786711 Msa0526080:three_prime_UTR
TGTTGGGTTCATATGACCTT+TGG 0.438991 3_4:+79786701 Msa0526080:three_prime_UTR
TCTATTTAACAGTTTCAATT+GGG 0.444557 3_4:-79786653 None:intergenic
GCCCTTGACATGGCAAGTCC+TGG 0.445151 3_4:-79785845 None:intergenic
AGCAAAATCAGCTAAACGTT+TGG 0.451570 3_4:+79786521 Msa0526080:CDS
TGGTGACTCTCGTGCAGTAC+TGG 0.463725 3_4:+79785571 Msa0526080:CDS
TGAACCCAACATCATGAAGT+TGG 0.468936 3_4:-79786689 None:intergenic
AAGCCCAACTTCATGATGTT+GGG 0.471507 3_4:+79786685 Msa0526080:three_prime_UTR
ATAAATAAATAGGATCAAAC+AGG 0.472624 3_4:+79782991 None:intergenic
TTGTTGTGCTTGCCACTGAT+GGG 0.475803 3_4:+79785951 Msa0526080:CDS
GTTGTGCTGAGTTGAGGAAC+AGG 0.476515 3_4:-79783123 None:intergenic
TATAACATAGACACATTAAG+AGG 0.479566 3_4:+79784163 Msa0526080:five_prime_UTR
CAGTGGCAAGCACAACAAAC+TGG 0.480296 3_4:-79785946 None:intergenic
TAAGCCCAACTTCATGATGT+TGG 0.481030 3_4:+79786684 Msa0526080:three_prime_UTR
AACCAGGAGTGCATAGGGTC+TGG 0.482895 3_4:+79785804 Msa0526080:CDS
CACAAAATTGAGGATTTGAT+GGG 0.483155 3_4:+79784195 Msa0526080:exon
AACCAGACCCTATGCACTCC+TGG 0.483257 3_4:-79785806 None:intergenic
CGCAGAATATCATGTCCTCT+TGG 0.484795 3_4:-79784780 None:intergenic
ATTTGATGGACACGGGCCAT+GGG 0.489246 3_4:+79784807 Msa0526080:CDS
AATAGCAGAAATATCATCAA+TGG 0.495485 3_4:-79786589 None:intergenic
TATGACCTTTGGTCCAGTTA+GGG 0.496034 3_4:+79786712 Msa0526080:three_prime_UTR
CTCCAGGACTTGCCATGTCA+AGG 0.496930 3_4:+79785843 Msa0526080:CDS
TTCTCCAAAAGAGGTCAGAA+AGG 0.500364 3_4:+79784402 Msa0526080:CDS
AGTCCTGGAGACTCTACATC+TGG 0.508363 3_4:-79785830 None:intergenic
TGATGAACCAGGAGTGCATA+GGG 0.509549 3_4:+79785799 Msa0526080:CDS
GAACCCAACATCATGAAGTT+GGG 0.509814 3_4:-79786688 None:intergenic
TTACCAGATGTAGAGTCTCC+AGG 0.526827 3_4:+79785827 Msa0526080:CDS
TGCATGGAAACGCAAGAGAA+GGG 0.527483 3_4:+79786560 Msa0526080:CDS
GAGAGAATAATTCAGTGTCA+AGG 0.530299 3_4:+79785758 Msa0526080:CDS
ATCAAGACTGTTGCATGGTG+TGG 0.533904 3_4:+79784430 Msa0526080:CDS
CAATTGGGCTATCTTGCTCA+GGG 0.538157 3_4:-79786638 None:intergenic
GAAAGTATATCACAAAATTG+AGG 0.554475 3_4:+79784185 Msa0526080:five_prime_UTR
GAGAGAAGCTGTTGAAGCAA+TGG 0.555010 3_4:+79784296 Msa0526080:CDS
TGCGGTATATTTGATGGACA+CGG 0.560385 3_4:+79784799 Msa0526080:CDS
TCCAGGACTTGCCATGTCAA+GGG 0.561968 3_4:+79785844 Msa0526080:CDS
GCTACAACATCAGACGATGA+TGG 0.562423 3_4:+79785593 Msa0526080:CDS
ATGCATGGAAACGCAAGAGA+AGG 0.563663 3_4:+79786559 Msa0526080:CDS
AAAATCAGCTAAACGTTTGG+TGG 0.569397 3_4:+79786524 Msa0526080:CDS
TGCCAAACCATTGAACATAG+AGG 0.573400 3_4:-79784226 None:intergenic
CAATTGCATAGCAAAGACCT+TGG 0.578108 3_4:-79784865 None:intergenic
GAAATTCTGTGAGATGTGAA+AGG 0.584077 3_4:+79784274 Msa0526080:CDS
GCGGTATATTTGATGGACAC+GGG 0.590895 3_4:+79784800 Msa0526080:CDS
CTTGCTCAGGGGAAATGGGA+GGG 0.592417 3_4:-79786626 None:intergenic
GTAACAGTTGTGCTGAGTTG+AGG 0.593859 3_4:-79783129 None:intergenic
CAATTAAGAGACCTTAATGA+AGG 0.594485 3_4:-79783165 None:intergenic
AGAGAATAATTCAGTGTCAA+GGG 0.594886 3_4:+79785759 Msa0526080:CDS
TCTTGCTCAGGGGAAATGGG+AGG 0.601493 3_4:-79786627 None:intergenic
TGTTGTGCTTGCCACTGATG+GGG 0.603053 3_4:+79785952 Msa0526080:CDS
TTCTACCCTAACTGGACCAA+AGG 0.605758 3_4:-79786717 None:intergenic
TTGGCTACAAAGTGACCCCA+TGG 0.606377 3_4:-79784823 None:intergenic
GAGTAAGAGAGTCAATGCCA+AGG 0.613440 3_4:+79784848 Msa0526080:CDS
ATGATGAACCAGGAGTGCAT+AGG 0.615902 3_4:+79785798 Msa0526080:CDS
ATCTCCAAAAGCCCTTGACA+TGG 0.615912 3_4:-79785855 None:intergenic
TCAAGACTGTTGCATGGTGT+GGG 0.621717 3_4:+79784431 Msa0526080:CDS
TGGAATGTGCAGTACATGCA+TGG 0.626814 3_4:+79786544 Msa0526080:CDS
AACCAATCAAGACTGTTGCA+TGG 0.651730 3_4:+79784425 Msa0526080:CDS
GCATGGAAACGCAAGAGAAG+GGG 0.652422 3_4:+79786561 Msa0526080:CDS
ACAAAATTGAGGATTTGATG+GGG 0.663664 3_4:+79784196 Msa0526080:exon
TTCTGTTTAAATGATGAACC+AGG 0.665974 3_4:+79785788 Msa0526080:CDS
CAAGATACTTACCCCATCAG+TGG 0.666268 3_4:-79785963 None:intergenic
CAAGAGGACATGATATTCTG+CGG 0.676913 3_4:+79784781 Msa0526080:CDS
ATAGGAATTTGGATGCCAAG+AGG 0.678718 3_4:+79784765 Msa0526080:intron
TTTGATGGACACGGGCCATG+GGG 0.686895 3_4:+79784808 Msa0526080:CDS
AGACTGTTGCATGGTGTGGG+AGG 0.695512 3_4:+79784434 Msa0526080:CDS
AATTGGGCTATCTTGCTCAG+GGG 0.712499 3_4:-79786637 None:intergenic
CAGTACCTGAAGTAACTCAG+AGG 0.714319 3_4:+79785906 Msa0526080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATACAAATATAACAAAA+TGG + chr3_4:79783217-79783236 Msa0526080:intron 10.0%
!! ACGAATAAAAATTATTAATA+TGG + chr3_4:79784037-79784056 Msa0526080:intron 10.0%
!! AAAAATAAAGTCTTCATAAA+TGG + chr3_4:79783036-79783055 Msa0526080:five_prime_UTR 15.0%
!! AAAAGAAGAAAAATAATGAA+TGG - chr3_4:79783196-79783215 None:intergenic 15.0%
!!! GTATTTTTCCTATTTTTATT+TGG + chr3_4:79783239-79783258 Msa0526080:intron 15.0%
!!! AAATATGTCACTTTTTTTTA+AGG + chr3_4:79783403-79783422 Msa0526080:intron 15.0%
!! CAAATTTATATAGAAGAAAA+AGG - chr3_4:79784101-79784120 None:intergenic 15.0%
!! ATATCAAAGACAAATAAAAT+GGG - chr3_4:79784682-79784701 None:intergenic 15.0%
!! TATATCAAAGACAAATAAAA+TGG - chr3_4:79784683-79784702 None:intergenic 15.0%
!! TTTGATATAAAATTCAATTC+TGG + chr3_4:79784694-79784713 Msa0526080:intron 15.0%
!! GATTATTGTATTAAAGATTA+TGG + chr3_4:79785875-79785894 Msa0526080:CDS 15.0%
!! AAAATTGAGATTAAATATGT+TGG + chr3_4:79786146-79786165 Msa0526080:intron 15.0%
!!! TTATCTATTTATTTGTTATC+TGG - chr3_4:79786246-79786265 None:intergenic 15.0%
!! ACAAATAAATAAATAATCAC+CGG + chr3_4:79786306-79786325 Msa0526080:intron 15.0%
!!! AGTTAATTATGTTTTTAGTT+TGG - chr3_4:79786380-79786399 None:intergenic 15.0%
!! TACAAACACCAAATAAAAAT+AGG - chr3_4:79783250-79783269 None:intergenic 20.0%
!!! ATATGATTTTTGATTTTCTC+AGG + chr3_4:79783462-79783481 Msa0526080:intron 20.0%
!! TATATATTAAGTTCCATAAG+AGG - chr3_4:79783636-79783655 None:intergenic 20.0%
!! TTGAATATACTATATGCAAA+TGG - chr3_4:79783819-79783838 None:intergenic 20.0%
!! TGCATATTGAAAATAGATTA+AGG - chr3_4:79784130-79784149 None:intergenic 20.0%
!!! TGGGTTGATTATAAATATAT+AGG - chr3_4:79784663-79784682 None:intergenic 20.0%
!! TAATTTAATCGTCAATAGAT+AGG - chr3_4:79784746-79784765 None:intergenic 20.0%
!! TCTATTGACGATTAAATTAT+AGG + chr3_4:79784747-79784766 Msa0526080:intron 20.0%
!! ACGATTAAATTATAGGAATT+TGG + chr3_4:79784754-79784773 Msa0526080:intron 20.0%
!! AACAACAAAGATTCAATATA+TGG + chr3_4:79784971-79784990 Msa0526080:intron 20.0%
!!! TTTATTTTATAATGGTTTGC+AGG + chr3_4:79785523-79785542 Msa0526080:intron 20.0%
!!! TTATTTTATAATGGTTTGCA+GGG + chr3_4:79785524-79785543 Msa0526080:intron 20.0%
!!! AATCATAGTAACTAGTTTAT+AGG - chr3_4:79785990-79786009 None:intergenic 20.0%
!! TTAAATTTATTGCTGAAATG+TGG + chr3_4:79786401-79786420 Msa0526080:intron 20.0%
!! TCTATTTAACAGTTTCAATT+GGG - chr3_4:79786656-79786675 None:intergenic 20.0%
!!! ATGAAGACTTTATTTTTGTC+TGG - chr3_4:79783033-79783052 None:intergenic 25.0%
! CTTACTTTGATGAATTTAAG+AGG + chr3_4:79783324-79783343 Msa0526080:intron 25.0%
!! TTTTCATGATACTGAATCAT+AGG + chr3_4:79783516-79783535 Msa0526080:intron 25.0%
! ATGGATAAAGAAATCAGAAA+AGG - chr3_4:79783784-79783803 None:intergenic 25.0%
! TATAACATAGACACATTAAG+AGG + chr3_4:79784163-79784182 Msa0526080:five_prime_UTR 25.0%
!! GAAAGTATATCACAAAATTG+AGG + chr3_4:79784185-79784204 Msa0526080:five_prime_UTR 25.0%
!! AGATCATTTTCACTAAAGAA+AGG + chr3_4:79784249-79784268 Msa0526080:CDS 25.0%
! GATATAAAATTCAATTCTGG+TGG + chr3_4:79784697-79784716 Msa0526080:intron 25.0%
!! TTTTAATGAATTTCTCCCTA+CGG - chr3_4:79785134-79785153 None:intergenic 25.0%
! TCTGCTAACTAGTATATATA+CGG - chr3_4:79785165-79785184 None:intergenic 25.0%
! ATTTGTTCATGTTACAAGTT+TGG - chr3_4:79785370-79785389 None:intergenic 25.0%
!!! TATTTTATAATGGTTTGCAG+GGG + chr3_4:79785525-79785544 Msa0526080:intron 25.0%
!!! AATAAATAGAAGTACTAACG+AGG - chr3_4:79785665-79785684 None:intergenic 25.0%
!! GAGTTTATTGTTGTCAATTT+TGG - chr3_4:79786110-79786129 None:intergenic 25.0%
! TGAGACATTTAGATTATGAT+TGG + chr3_4:79786204-79786223 Msa0526080:intron 25.0%
! AATAGCAGAAATATCATCAA+TGG - chr3_4:79786592-79786611 None:intergenic 25.0%
! GTCTATTTAACAGTTTCAAT+TGG - chr3_4:79786657-79786676 None:intergenic 25.0%
CGAGAAAGAAAAGATGTAAA+AGG - chr3_4:79783073-79783092 None:intergenic 30.0%
CAATTAAGAGACCTTAATGA+AGG - chr3_4:79783168-79783187 None:intergenic 30.0%
TTAACACAGTAGTTCAGTAA+TGG + chr3_4:79783725-79783744 Msa0526080:intron 30.0%
ATAAAGAAATCAGAAAAGGC+TGG - chr3_4:79783780-79783799 None:intergenic 30.0%
CAAATGGATCAAACTGAATA+TGG - chr3_4:79783803-79783822 None:intergenic 30.0%
ATTGTCTTCATGTTAAGTCA+CGG + chr3_4:79783968-79783987 Msa0526080:intron 30.0%
TTCTTCAATAGCACATAGAA+AGG - chr3_4:79784065-79784084 None:intergenic 30.0%
TATATAGAAGAAAAAGGAGC+AGG - chr3_4:79784095-79784114 None:intergenic 30.0%
TCACAAAATTGAGGATTTGA+TGG + chr3_4:79784194-79784213 Msa0526080:exon 30.0%
CACAAAATTGAGGATTTGAT+GGG + chr3_4:79784195-79784214 Msa0526080:exon 30.0%
ACAAAATTGAGGATTTGATG+GGG + chr3_4:79784196-79784215 Msa0526080:exon 30.0%
CATTTATCCTCTATGTTCAA+TGG + chr3_4:79784219-79784238 Msa0526080:CDS 30.0%
TTGAAGGTTAAACAAACTCA+CGG - chr3_4:79784559-79784578 None:intergenic 30.0%
TACATGTTTGTATACACGTT+GGG - chr3_4:79784623-79784642 None:intergenic 30.0%
! ACATGTACTCGTTACATTTT+TGG + chr3_4:79784636-79784655 Msa0526080:intron 30.0%
ATATTCTGCGGTATATTTGA+TGG + chr3_4:79784793-79784812 Msa0526080:CDS 30.0%
AACAATATAGTTGCGATGTT+AGG + chr3_4:79785194-79785213 Msa0526080:intron 30.0%
ACAATATAGTTGCGATGTTA+GGG + chr3_4:79785195-79785214 Msa0526080:intron 30.0%
!! TATGTCTTTGAAATAAGTGC+TGG + chr3_4:79785223-79785242 Msa0526080:intron 30.0%
!! ATGTCTTTGAAATAAGTGCT+GGG + chr3_4:79785224-79785243 Msa0526080:intron 30.0%
GTAATCCAATTCCATCAAAT+AGG - chr3_4:79785267-79785286 None:intergenic 30.0%
GTTACAAGTTTGGTAAATGT+AGG - chr3_4:79785360-79785379 None:intergenic 30.0%
! ACATGAACAAATTGATGACA+TGG + chr3_4:79785378-79785397 Msa0526080:intron 30.0%
AACTTCACTGATATATTGGT+TGG - chr3_4:79785476-79785495 None:intergenic 30.0%
CAAGAACTTCACTGATATAT+TGG - chr3_4:79785480-79785499 None:intergenic 30.0%
!! ATTTTATAATGGTTTGCAGG+GGG + chr3_4:79785526-79785545 Msa0526080:intron 30.0%
AAGTACTAACGAGGTAAATT+TGG - chr3_4:79785656-79785675 None:intergenic 30.0%
TAATTGCATAATTGCAGAAG+AGG + chr3_4:79785733-79785752 Msa0526080:intron 30.0%
AGAGAATAATTCAGTGTCAA+GGG + chr3_4:79785759-79785778 Msa0526080:CDS 30.0%
TTCTGTTTAAATGATGAACC+AGG + chr3_4:79785788-79785807 Msa0526080:CDS 30.0%
! TTTTATCATTCTACCCTAAC+TGG - chr3_4:79786728-79786747 None:intergenic 30.0%
TCTCAGATTCACCTTCATTA+AGG + chr3_4:79783154-79783173 Msa0526080:five_prime_UTR 35.0%
!! CGGTGTATTTGTTTCTGAAT+TGG - chr3_4:79783587-79783606 None:intergenic 35.0%
! ATACACCGTTTCATTTTGTG+TGG + chr3_4:79783599-79783618 Msa0526080:intron 35.0%
TTCCACCACACAAAATGAAA+CGG - chr3_4:79783607-79783626 None:intergenic 35.0%
!! TTTCATTTTGTGTGGTGGAA+TGG + chr3_4:79783607-79783626 Msa0526080:intron 35.0%
TGAAAACTGAGGAGAATTTC+AGG - chr3_4:79783873-79783892 None:intergenic 35.0%
CCACGAAAAATTGAAAACTG+AGG - chr3_4:79783884-79783903 None:intergenic 35.0%
! CCTCAGTTTTCAATTTTTCG+TGG + chr3_4:79783881-79783900 Msa0526080:intron 35.0%
ATCCTCTATGTTCAATGGTT+TGG + chr3_4:79784224-79784243 Msa0526080:CDS 35.0%
GAAATTCTGTGAGATGTGAA+AGG + chr3_4:79784274-79784293 Msa0526080:CDS 35.0%
TCTGGCACTATTAATGTTGA+TGG + chr3_4:79784357-79784376 Msa0526080:CDS 35.0%
! TAAGAGCTTGTTTCGAATTC+CGG + chr3_4:79784508-79784527 Msa0526080:intron 35.0%
TGACAAAAGCTACACTTTGA+AGG - chr3_4:79784575-79784594 None:intergenic 35.0%
GTACATGTTTGTATACACGT+TGG - chr3_4:79784624-79784643 None:intergenic 35.0%
GTTAATCATCTGCATCATTC+TGG + chr3_4:79784719-79784738 Msa0526080:intron 35.0%
!!! CATTGACTCTCTTACTCTTT+TGG - chr3_4:79784845-79784864 None:intergenic 35.0%
ATCACTTGACGATCATGTAA+AGG + chr3_4:79784915-79784934 Msa0526080:intron 35.0%
ATGCTCAAGTTCTTGATCAA+TGG - chr3_4:79785025-79785044 None:intergenic 35.0%
!! AAGTTTGACTCGTTTTACAG+TGG + chr3_4:79785051-79785070 Msa0526080:intron 35.0%
TACCTGTCTAACAATTGAGA+GGG - chr3_4:79785085-79785104 None:intergenic 35.0%
TTACCTGTCTAACAATTGAG+AGG - chr3_4:79785086-79785105 None:intergenic 35.0%
!! AATAAGTGCTGGGATAACAA+TGG + chr3_4:79785234-79785253 Msa0526080:intron 35.0%
TCTGTCCTATTTGATGGAAT+TGG + chr3_4:79785259-79785278 Msa0526080:intron 35.0%
ATCTTGATCAAATACCGATC+TGG - chr3_4:79785407-79785426 None:intergenic 35.0%
! ACGGTTTTCATAGCAAATGT+TGG + chr3_4:79785551-79785570 Msa0526080:CDS 35.0%
GAGAGAATAATTCAGTGTCA+AGG + chr3_4:79785758-79785777 Msa0526080:CDS 35.0%
ATATTCCTCTGAGTTACTTC+AGG - chr3_4:79785914-79785933 None:intergenic 35.0%
CTCTTGTAGAAATGAAACTC+TGG + chr3_4:79786080-79786099 Msa0526080:intron 35.0%
AACAATAAACTCTCACACAC+AGG + chr3_4:79786118-79786137 Msa0526080:intron 35.0%
TCACCGGTCATATTACAATT+TGG + chr3_4:79786322-79786341 Msa0526080:intron 35.0%
CTGCCAAATTGTAATATGAC+CGG - chr3_4:79786328-79786347 None:intergenic 35.0%
ATTACAATTTGGCAGTTGAC+TGG + chr3_4:79786333-79786352 Msa0526080:intron 35.0%
!! TTTAGTTTGGTTCAACCAGT+TGG - chr3_4:79786367-79786386 None:intergenic 35.0%
GGAGTTACATTAAGTACTTG+TGG + chr3_4:79786422-79786441 Msa0526080:intron 35.0%
!!! TTTGTTTTGTGATGCAGGTT+TGG + chr3_4:79786445-79786464 Msa0526080:intron 35.0%
!! TTGTTTTGTGATGCAGGTTT+GGG + chr3_4:79786446-79786465 Msa0526080:intron 35.0%
AATGTCTACTGCTTCTTGAT+TGG - chr3_4:79786481-79786500 None:intergenic 35.0%
!! TTAGCTGATTTTGCTTTGTC+TGG - chr3_4:79786516-79786535 None:intergenic 35.0%
AGCAAAATCAGCTAAACGTT+TGG + chr3_4:79786521-79786540 Msa0526080:CDS 35.0%
AAAATCAGCTAAACGTTTGG+TGG + chr3_4:79786524-79786543 Msa0526080:CDS 35.0%
TTCAGGAATTCACTGTGTAG+AGG - chr3_4:79783856-79783875 None:intergenic 40.0%
TGCCAAACCATTGAACATAG+AGG - chr3_4:79784229-79784248 None:intergenic 40.0%
! GACTTGATTTTGTGTAGCTC+TGG + chr3_4:79784339-79784358 Msa0526080:CDS 40.0%
!! ACCTCTTTTGGAGAAAACTG+AGG - chr3_4:79784397-79784416 None:intergenic 40.0%
TTCTCCAAAAGAGGTCAGAA+AGG + chr3_4:79784402-79784421 Msa0526080:CDS 40.0%
AACCAATCAAGACTGTTGCA+TGG + chr3_4:79784425-79784444 Msa0526080:CDS 40.0%
! AAGAGCTTGTTTCGAATTCC+GGG + chr3_4:79784509-79784528 Msa0526080:intron 40.0%
! CTTGATTTTGTCAAAACCCC+CGG - chr3_4:79784530-79784549 None:intergenic 40.0%
CGTTGGGTTTGACAAAATCA+CGG - chr3_4:79784607-79784626 None:intergenic 40.0%
ATAGGAATTTGGATGCCAAG+AGG + chr3_4:79784765-79784784 Msa0526080:intron 40.0%
CAAGAGGACATGATATTCTG+CGG + chr3_4:79784781-79784800 Msa0526080:CDS 40.0%
! TGCGGTATATTTGATGGACA+CGG + chr3_4:79784799-79784818 Msa0526080:CDS 40.0%
CAATTGCATAGCAAAGACCT+TGG - chr3_4:79784868-79784887 None:intergenic 40.0%
! CAAGGTCTTTGCTATGCAAT+TGG + chr3_4:79784866-79784885 Msa0526080:CDS 40.0%
AACAACTTTCGAGAATCCGT+AGG + chr3_4:79785115-79785134 Msa0526080:intron 40.0%
ACAACTTTCGAGAATCCGTA+GGG + chr3_4:79785116-79785135 Msa0526080:intron 40.0%
ATGGCATCTGTCCTATTTGA+TGG + chr3_4:79785253-79785272 Msa0526080:intron 40.0%
TGATGACATGGAATCCAGAT+CGG + chr3_4:79785390-79785409 Msa0526080:intron 40.0%
!! ATCAGACGATGATGGAAGTT+TGG + chr3_4:79785601-79785620 Msa0526080:CDS 40.0%
TTGGTTCAACCAGTTGGATT+AGG - chr3_4:79786361-79786380 None:intergenic 40.0%
!!! TGTGGTTTGTTTTGTGATGC+AGG + chr3_4:79786440-79786459 Msa0526080:intron 40.0%
TAAGCCCAACTTCATGATGT+TGG + chr3_4:79786684-79786703 Msa0526080:three_prime_UTR 40.0%
AAGCCCAACTTCATGATGTT+GGG + chr3_4:79786685-79786704 Msa0526080:three_prime_UTR 40.0%
GAACCCAACATCATGAAGTT+GGG - chr3_4:79786691-79786710 None:intergenic 40.0%
TGAACCCAACATCATGAAGT+TGG - chr3_4:79786692-79786711 None:intergenic 40.0%
TGTTGGGTTCATATGACCTT+TGG + chr3_4:79786701-79786720 Msa0526080:three_prime_UTR 40.0%
ATATGACCTTTGGTCCAGTT+AGG + chr3_4:79786711-79786730 Msa0526080:three_prime_UTR 40.0%
TATGACCTTTGGTCCAGTTA+GGG + chr3_4:79786712-79786731 Msa0526080:three_prime_UTR 40.0%
GTAACAGTTGTGCTGAGTTG+AGG - chr3_4:79783132-79783151 None:intergenic 45.0%
! CACCGTTTCATTTTGTGTGG+TGG + chr3_4:79783602-79783621 Msa0526080:intron 45.0%
GGTGGAATGGAATCCTCTTA+TGG + chr3_4:79783620-79783639 Msa0526080:intron 45.0%
AAACAGTAGCTAGCTAAGCG+TGG - chr3_4:79783751-79783770 None:intergenic 45.0%
GAGAGAAGCTGTTGAAGCAA+TGG + chr3_4:79784296-79784315 Msa0526080:CDS 45.0%
! GCCTCAGTTTTCTCCAAAAG+AGG + chr3_4:79784393-79784412 Msa0526080:CDS 45.0%
! GGTTCCTTTCTGACCTCTTT+TGG - chr3_4:79784409-79784428 None:intergenic 45.0%
CACCATGCAACAGTCTTGAT+TGG - chr3_4:79784430-79784449 None:intergenic 45.0%
ATCAAGACTGTTGCATGGTG+TGG + chr3_4:79784430-79784449 Msa0526080:CDS 45.0%
TCAAGACTGTTGCATGGTGT+GGG + chr3_4:79784431-79784450 Msa0526080:CDS 45.0%
! AGAGCTTGTTTCGAATTCCG+GGG + chr3_4:79784510-79784529 Msa0526080:intron 45.0%
!! CGGGGGTTTTGACAAAATCA+AGG + chr3_4:79784528-79784547 Msa0526080:intron 45.0%
CGCAGAATATCATGTCCTCT+TGG - chr3_4:79784783-79784802 None:intergenic 45.0%
! GCGGTATATTTGATGGACAC+GGG + chr3_4:79784800-79784819 Msa0526080:CDS 45.0%
GAGTAAGAGAGTCAATGCCA+AGG + chr3_4:79784848-79784867 Msa0526080:CDS 45.0%
TGCCCTCTCAATTGTTAGAC+AGG + chr3_4:79785080-79785099 Msa0526080:intron 45.0%
! TAATGGTTTGCAGGGGGAAA+CGG + chr3_4:79785532-79785551 Msa0526080:intron 45.0%
GCTACAACATCAGACGATGA+TGG + chr3_4:79785593-79785612 Msa0526080:CDS 45.0%
! ATGATGAACCAGGAGTGCAT+AGG + chr3_4:79785798-79785817 Msa0526080:CDS 45.0%
! TGATGAACCAGGAGTGCATA+GGG + chr3_4:79785799-79785818 Msa0526080:CDS 45.0%
TTACCAGATGTAGAGTCTCC+AGG + chr3_4:79785827-79785846 Msa0526080:CDS 45.0%
ATCTCCAAAAGCCCTTGACA+TGG - chr3_4:79785858-79785877 None:intergenic 45.0%
CAGTACCTGAAGTAACTCAG+AGG + chr3_4:79785906-79785925 Msa0526080:CDS 45.0%
! TTTGTTGTGCTTGCCACTGA+TGG + chr3_4:79785950-79785969 Msa0526080:CDS 45.0%
TTGTTGTGCTTGCCACTGAT+GGG + chr3_4:79785951-79785970 Msa0526080:CDS 45.0%
CAAGATACTTACCCCATCAG+TGG - chr3_4:79785966-79785985 None:intergenic 45.0%
! TGACTGGTTCCTAATCCAAC+TGG + chr3_4:79786349-79786368 Msa0526080:intron 45.0%
TGGAATGTGCAGTACATGCA+TGG + chr3_4:79786544-79786563 Msa0526080:CDS 45.0%
ATGCATGGAAACGCAAGAGA+AGG + chr3_4:79786559-79786578 Msa0526080:CDS 45.0%
TGCATGGAAACGCAAGAGAA+GGG + chr3_4:79786560-79786579 Msa0526080:CDS 45.0%
CTATCTTGCTCAGGGGAAAT+GGG - chr3_4:79786633-79786652 None:intergenic 45.0%
AATTGGGCTATCTTGCTCAG+GGG - chr3_4:79786640-79786659 None:intergenic 45.0%
CAATTGGGCTATCTTGCTCA+GGG - chr3_4:79786641-79786660 None:intergenic 45.0%
TCAATTGGGCTATCTTGCTC+AGG - chr3_4:79786642-79786661 None:intergenic 45.0%
TTCTACCCTAACTGGACCAA+AGG - chr3_4:79786720-79786739 None:intergenic 45.0%
!!! TTAGTTAATTTATTTTATAA+TGG + chr3_4:79785515-79785534 Msa0526080:intron 5.0%
!! TCATTTATAATTATATAAAT+TGG + chr3_4:79785695-79785714 Msa0526080:intron 5.0%
! GTTGTGCTGAGTTGAGGAAC+AGG - chr3_4:79783126-79783145 None:intergenic 50.0%
! GAGCTTGTTTCGAATTCCGG+GGG + chr3_4:79784511-79784530 Msa0526080:intron 50.0%
! TATTTGATGGACACGGGCCA+TGG + chr3_4:79784806-79784825 Msa0526080:CDS 50.0%
! ATTTGATGGACACGGGCCAT+GGG + chr3_4:79784807-79784826 Msa0526080:CDS 50.0%
TTGGCTACAAAGTGACCCCA+TGG - chr3_4:79784826-79784845 None:intergenic 50.0%
AGTCCTGGAGACTCTACATC+TGG - chr3_4:79785833-79785852 None:intergenic 50.0%
TCCAGGACTTGCCATGTCAA+GGG + chr3_4:79785844-79785863 Msa0526080:CDS 50.0%
! CTTGCCATGTCAAGGGCTTT+TGG + chr3_4:79785851-79785870 Msa0526080:CDS 50.0%
CAGTGGCAAGCACAACAAAC+TGG - chr3_4:79785949-79785968 None:intergenic 50.0%
TGTTGTGCTTGCCACTGATG+GGG + chr3_4:79785952-79785971 Msa0526080:CDS 50.0%
GCATGGAAACGCAAGAGAAG+GGG + chr3_4:79786561-79786580 Msa0526080:CDS 50.0%
GCTATCTTGCTCAGGGGAAA+TGG - chr3_4:79786634-79786653 None:intergenic 50.0%
AGACTGTTGCATGGTGTGGG+AGG + chr3_4:79784434-79784453 Msa0526080:CDS 55.0%
! TTTGATGGACACGGGCCATG+GGG + chr3_4:79784808-79784827 Msa0526080:CDS 55.0%
TGGTGACTCTCGTGCAGTAC+TGG + chr3_4:79785571-79785590 Msa0526080:CDS 55.0%
! AACCAGGAGTGCATAGGGTC+TGG + chr3_4:79785804-79785823 Msa0526080:CDS 55.0%
AACCAGACCCTATGCACTCC+TGG - chr3_4:79785809-79785828 None:intergenic 55.0%
CTCCAGGACTTGCCATGTCA+AGG + chr3_4:79785843-79785862 Msa0526080:CDS 55.0%
CTTGCTCAGGGGAAATGGGA+GGG - chr3_4:79786629-79786648 None:intergenic 55.0%
TCTTGCTCAGGGGAAATGGG+AGG - chr3_4:79786630-79786649 None:intergenic 55.0%
GCCCTTGACATGGCAAGTCC+TGG - chr3_4:79785848-79785867 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79782993 79786793 79782993 ID=Msa0526080;Name=Msa0526080
chr3_4 mRNA 79782993 79786793 79782993 ID=Msa0526080-mRNA-1;Parent=Msa0526080;Name=Msa0526080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=243|0.8|0.83|1|0.8|0.66|6|119|320
chr3_4 exon 79782993 79783175 79782993 ID=Msa0526080-mRNA-1:exon:23944;Parent=Msa0526080-mRNA-1
chr3_4 exon 79784153 79784455 79784153 ID=Msa0526080-mRNA-1:exon:23945;Parent=Msa0526080-mRNA-1
chr3_4 exon 79784769 79784930 79784769 ID=Msa0526080-mRNA-1:exon:23946;Parent=Msa0526080-mRNA-1
chr3_4 exon 79785545 79785665 79785545 ID=Msa0526080-mRNA-1:exon:23947;Parent=Msa0526080-mRNA-1
chr3_4 exon 79785750 79785973 79785750 ID=Msa0526080-mRNA-1:exon:23948;Parent=Msa0526080-mRNA-1
chr3_4 exon 79786462 79786793 79786462 ID=Msa0526080-mRNA-1:exon:23949;Parent=Msa0526080-mRNA-1
chr3_4 five_prime_UTR 79782993 79783175 79782993 ID=Msa0526080-mRNA-1:five_prime_utr;Parent=Msa0526080-mRNA-1
chr3_4 five_prime_UTR 79784153 79784212 79784153 ID=Msa0526080-mRNA-1:five_prime_utr;Parent=Msa0526080-mRNA-1
chr3_4 CDS 79784213 79784455 79784213 ID=Msa0526080-mRNA-1:cds;Parent=Msa0526080-mRNA-1
chr3_4 CDS 79784769 79784930 79784769 ID=Msa0526080-mRNA-1:cds;Parent=Msa0526080-mRNA-1
chr3_4 CDS 79785545 79785665 79785545 ID=Msa0526080-mRNA-1:cds;Parent=Msa0526080-mRNA-1
chr3_4 CDS 79785750 79785973 79785750 ID=Msa0526080-mRNA-1:cds;Parent=Msa0526080-mRNA-1
chr3_4 CDS 79786462 79786674 79786462 ID=Msa0526080-mRNA-1:cds;Parent=Msa0526080-mRNA-1
chr3_4 three_prime_UTR 79786675 79786793 79786675 ID=Msa0526080-mRNA-1:three_prime_utr;Parent=Msa0526080-mRNA-1
Gene Sequence

>Msa0526080

ATGGGGCATTTATCCTCTATGTTCAATGGTTTGGCAAGATCATTTTCACTAAAGAAAGGAAGAAATTCTGTGAGATGTGAAAGGAGAGAAGCTGTTGAAGCAATGGCAAAAGAAGCTAAGAAAAATGACTTGATTTTGTGTAGCTCTGGCACTATTAATGTTGATGGTTCAAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGTCAGAAAGGAACCAATCAAGACTGTTGCATGGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATATTCTGCGGTATATTTGATGGACACGGGCCATGGGGTCACTTTGTAGCCAAAAGAGTAAGAGAGTCAATGCCAAGGTCTTTGCTATGCAATTGGCAAGAGACACTTGCTACACAATCTTCATCACTTGACGATCATGGGGAAACGGTTTTCATAGCAAATGTTGGTGACTCTCGTGCAGTACTGGCTACAACATCAGACGATGATGGAAGTTTGGTAGCAGTACAACTAACAGTTGATTTCAAGCCAAATTTACCTCAAGAGGAAGAGAGAATAATTCAGTGTCAAGGGCGTGTGTTCTGTTTAAATGATGAACCAGGAGTGCATAGGGTCTGGTTACCAGATGTAGAGTCTCCAGGACTTGCCATGTCAAGGGCTTTTGGAGATTATTGTATTAAAGATTATGGTCTTATTTCAGTACCTGAAGTAACTCAGAGGAATATAAGTAGTAAAGACCAGTTTGTTGTGCTTGCCACTGATGGGGTTTGGGATGTGATCTCCAATCAAGAAGCAGTAGACATTGTATCTTCAACACCAGACAAAGCAAAATCAGCTAAACGTTTGGTGGAATGTGCAGTACATGCATGGAAACGCAAGAGAAGGGGTATTGCCATTGATGATATTTCTGCTATTTGTCTCATTTTGCACCCTCCCATTTCCCCTGAGCAAGATAGCCCAATTGAAACTGTTAAATAG
Protein sequence

>Msa0526080

MGHLSSMFNGLARSFSLKKGRNSVRCERREAVEAMAKEAKKNDLILCSSGTINVDGSNNFASVFSKRGQKGTNQDCCMVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPRSLLCNWQETLATQSSSLDDHGETVFIANVGDSRAVLATTSDDDGSLVAVQLTVDFKPNLPQEEERIIQCQGRVFCLNDEPGVHRVWLPDVESPGLAMSRAFGDYCIKDYGLISVPEVTQRNISSKDQFVVLATDGVWDVISNQEAVDIVSSTPDKAKSAKRLVECAVHAWKRKRRGIAIDDISAICLILHPPISPEQDSPIETVK*