AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363260 MtrunA17_Chr8g0387311 99.176 364 3 0 136 499 232 595 0.0 751
Msa1363260 MtrunA17_Chr8g0387311 97.037 135 1 2 1 135 1 132 6.74e-83 268
Msa1363260 MtrunA17_Chr4g0030381 49.730 370 168 8 136 492 130 494 2.09e-109 334
Msa1363260 MtrunA17_Chr8g0373811 46.110 347 165 4 146 476 179 519 1.85e-106 328
Msa1363260 MtrunA17_Chr3g0130121 35.920 348 203 4 146 478 185 527 6.66e-76 248
Msa1363260 MtrunA17_Chr4g0034941 26.000 350 212 11 154 475 142 472 1.80e-20 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363260 AT1G63850.1 75.414 362 87 1 140 499 187 548 0.0 573
Msa1363260 AT1G63850.1 60.870 69 19 3 75 138 1 66 1.53e-12 70.1
Msa1363260 AT5G60050.1 47.154 369 183 5 133 492 132 497 8.75e-117 353
Msa1363260 AT3G50780.1 47.619 336 165 4 146 476 169 498 3.05e-101 314
Msa1363260 AT3G50780.2 47.619 336 165 4 146 476 169 498 3.05e-101 314
Msa1363260 AT2G13690.1 35.965 342 203 4 146 476 198 534 2.36e-72 239
Msa1363260 AT3G05675.2 24.259 371 226 13 144 475 68 422 4.55e-11 65.5
Msa1363260 AT3G05675.1 24.259 371 226 13 144 475 68 422 4.55e-11 65.5
Msa1363260 AT3G05675.3 24.259 371 226 13 144 475 68 422 4.55e-11 65.5

Find 165 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACCCTCTTTGAATATT+AGG 0.090085 tig0018036:-71218 None:intergenic
TTTACACCCCTTGTCATATT+TGG 0.106495 tig0018036:+72299 Msa1363260:three_prime_UTR
TTACAGGCTAATTTGCTTTA+TGG 0.132692 tig0018036:+72692 Msa1363260:three_prime_UTR
CTGCTGAATTTATTAAAATT+TGG 0.164501 tig0018036:-72653 None:intergenic
TTTGGTGGAGAAGGGCTTTC+TGG 0.184742 tig0018036:+71243 Msa1363260:CDS
CCAACCAAAATCATCATAAA+AGG 0.206268 tig0018036:-71054 None:intergenic
AGAGGATGTTTCTAAAGTTT+TGG 0.218381 tig0018036:+69885 Msa1363260:CDS
AGATAATTTACATTGGATTT+TGG 0.235197 tig0018036:+70824 Msa1363260:CDS
CAAACCCTCTTTGAATATTA+GGG 0.238945 tig0018036:-71217 None:intergenic
GGTAATTGAGGTTCGGGTTC+GGG 0.240743 tig0018036:-69205 None:intergenic
GTTGCGGTCAAACTAATTTC+TGG 0.258376 tig0018036:+72432 Msa1363260:three_prime_UTR
TTCAAAGAGGGTTTGAAGTT+TGG 0.270988 tig0018036:+71225 Msa1363260:CDS
TGATGTATTGTAAGGATCTT+AGG 0.291770 tig0018036:+69848 Msa1363260:CDS
GGGTAATTGAGGTTCGGGTT+CGG 0.296748 tig0018036:-69206 None:intergenic
CTCTGTACAGGTCTCATTAC+AGG 0.318230 tig0018036:+72676 Msa1363260:three_prime_UTR
TTTGTCTTGTTTGGAGTACT+TGG 0.324655 tig0018036:+70425 Msa1363260:CDS
CGGACATTCCACTTCGGGTT+CGG 0.335543 tig0018036:+69321 Msa1363260:CDS
TTTAATCGCTTCTTGAATTC+CGG 0.339244 tig0018036:+71185 Msa1363260:CDS
TTACACCCCTTGTCATATTT+GGG 0.343583 tig0018036:+72300 Msa1363260:three_prime_UTR
GTGGAATGTCCGTTTGAAAT+TGG 0.344811 tig0018036:-69310 None:intergenic
ATTATCTGAAGCACATTCTA+AGG 0.352510 tig0018036:+70908 Msa1363260:CDS
TTGTCCGGCGGCGGCGACAT+TGG 0.355009 tig0018036:-69409 None:intergenic
GGACATTCCACTTCGGGTTC+GGG 0.355590 tig0018036:+69322 Msa1363260:CDS
TGTCCGGCGGCGGCGACATT+GGG 0.361539 tig0018036:-69408 None:intergenic
CTATTCAGCTTGTATTTGTC+AGG 0.365329 tig0018036:+72353 Msa1363260:three_prime_UTR
CTGCAATTGGATTTGATGCT+GGG 0.368070 tig0018036:+70400 Msa1363260:CDS
TCTTAGGTTTCGGCTGCAAT+TGG 0.368154 tig0018036:+70387 Msa1363260:intron
GAATCGGGTAATTGAGGTTC+GGG 0.373650 tig0018036:-69211 None:intergenic
TTGAGGTTTGAGGAGGGAAT+TGG 0.373910 tig0018036:-69098 None:intergenic
GGTGAGTGCAGAGTTGAATT+TGG 0.374911 tig0018036:-69371 None:intergenic
TCACGACACTTGCGTCGTTT+AGG 0.377773 tig0018036:-69154 None:intergenic
CTTATTCGTGTGGTTCTTGA+AGG 0.383037 tig0018036:+70609 Msa1363260:CDS
TCAAACGGACATTCCACTTC+GGG 0.383219 tig0018036:+69316 Msa1363260:CDS
ACTAGTTCATTAACATTAAA+CGG 0.390704 tig0018036:-72546 None:intergenic
TTTGAGGTTGATGTATTGTA+AGG 0.401471 tig0018036:+69840 Msa1363260:CDS
CTAATTGAATACTAGTTTGA+AGG 0.403499 tig0018036:+72592 Msa1363260:three_prime_UTR
TACAACTATAGCGTGGTATA+CGG 0.406813 tig0018036:-72252 None:intergenic
GCTAGGTTGTTTGTTGGGAT+TGG 0.410646 tig0018036:+70969 Msa1363260:CDS
TTCGGGTTGTGTTGCGGAAG+TGG 0.411944 tig0018036:-69188 None:intergenic
TTGAATTTGGTGAAGCTTGA+AGG 0.416618 tig0018036:-69358 None:intergenic
GCTGCAATTGGATTTGATGC+TGG 0.422016 tig0018036:+70399 Msa1363260:CDS
GGTTTGAAGTTTGGTGGAGA+AGG 0.426450 tig0018036:+71234 Msa1363260:CDS
AGGTTTATGTGGAGACTTTG+AGG 0.431350 tig0018036:+69824 Msa1363260:CDS
GATTGGAAAGGGACAGTTGT+TGG 0.434584 tig0018036:+70986 Msa1363260:CDS
CTGTGATGACTTCTATCTAC+AGG 0.435764 tig0018036:-72469 None:intergenic
CGAAGAGCGTTGGACTTGAT+CGG 0.439570 tig0018036:-69435 None:intergenic
AAAGAGGGTTTGAAGTTTGG+TGG 0.440178 tig0018036:+71228 Msa1363260:CDS
GCGTCGTTTAGGTTTGGTGA+TGG 0.445877 tig0018036:-69143 None:intergenic
GTGGAATATACTAATTTAGT+AGG 0.448228 tig0018036:-72377 None:intergenic
AATATTAGGGCAATCTTCAC+CGG 0.449000 tig0018036:-71204 None:intergenic
TTGTTTGTTGGGATTGGAAA+GGG 0.449026 tig0018036:+70975 Msa1363260:CDS
GAAGAGCGTTGGACTTGATC+GGG 0.449446 tig0018036:-69434 None:intergenic
TTACCGCTAGGTTGTTTGTT+GGG 0.451093 tig0018036:+70964 Msa1363260:CDS
GAGCATCCAAGGGCCTTGAT+AGG 0.451859 tig0018036:+71084 Msa1363260:CDS
GTTCATTAACATTAAACGGT+TGG 0.456408 tig0018036:-72542 None:intergenic
ACACTTGCGTCGTTTAGGTT+TGG 0.462451 tig0018036:-69149 None:intergenic
TGAATCGGGTAATTGAGGTT+CGG 0.466042 tig0018036:-69212 None:intergenic
CTTACCACTCTCCTGGCAAC+AGG 0.466584 tig0018036:+71145 Msa1363260:CDS
GACGCAGAGTCAACAGCGTT+CGG 0.469378 tig0018036:+69759 Msa1363260:intron
TCCAACGCTCTTCGAAATGA+TGG 0.471774 tig0018036:+69444 Msa1363260:CDS
TAACGAACGGTGTAAGTAGA+AGG 0.472517 tig0018036:-69235 None:intergenic
TGGTGAAGCTTGAAGGAAAA+GGG 0.473098 tig0018036:-69351 None:intergenic
ATTCTTCTCAGAATGATCTT+CGG 0.473417 tig0018036:+70691 Msa1363260:CDS
GTTACCGCTAGGTTGTTTGT+TGG 0.477193 tig0018036:+70963 Msa1363260:CDS
TCTTCTTCACCAATTTCAAA+CGG 0.478223 tig0018036:+69301 Msa1363260:CDS
AAGCAAAATTTCCTGTTGCC+AGG 0.480844 tig0018036:-71156 None:intergenic
GTTTGAAGTTTGGTGGAGAA+GGG 0.485596 tig0018036:+71235 Msa1363260:CDS
CGTCGTTTAGGTTTGGTGAT+GGG 0.487514 tig0018036:-69142 None:intergenic
ACAGTTGTTGGCTTCTAAAG+AGG 0.487790 tig0018036:+70998 Msa1363260:CDS
GGTGTAAGTAGAAGGTGAAT+CGG 0.487879 tig0018036:-69227 None:intergenic
CTAAGGTGCCTGCAGTTCAC+AGG 0.488194 tig0018036:+70925 Msa1363260:CDS
ACCTCAAACCTGTGAACTGC+AGG 0.488487 tig0018036:-70933 None:intergenic
TAAATTCAGCAGCTCTGTAC+AGG 0.489466 tig0018036:+72664 Msa1363260:three_prime_UTR
TAATTCGTAATTGTCTTGTC+CGG 0.492734 tig0018036:-71286 None:intergenic
ATTCCCCTCTTCATATCCAT+TGG 0.492767 tig0018036:-70562 None:intergenic
GAACTTCGTCTTGAATCTGT+TGG 0.492847 tig0018036:+70501 Msa1363260:CDS
CAACCCAATGTCGCCGCCGC+CGG 0.496960 tig0018036:+69405 Msa1363260:CDS
TGATGATGTTGAGGTTTATG+TGG 0.498709 tig0018036:+69813 Msa1363260:CDS
AGAGGAACGGAGAGCAAGAC+CGG 0.499813 tig0018036:+71267 Msa1363260:CDS
TTGGTGAAGCTTGAAGGAAA+AGG 0.499866 tig0018036:-69352 None:intergenic
TCTTCTTCATCCTCCGCCCA+CGG 0.501079 tig0018036:-70456 None:intergenic
CAATTTGACTTACATCCTGC+AGG 0.501110 tig0018036:-70791 None:intergenic
CAACCAAAATCATCATAAAA+GGG 0.501348 tig0018036:-71053 None:intergenic
TGAATCTGTTGGAGCTGTGG+AGG 0.503064 tig0018036:+70512 Msa1363260:CDS
GGAGAAGGGCTTTCTGGAAG+AGG 0.504200 tig0018036:+71249 Msa1363260:CDS
TCTTGAAGGTAAAGATGAAA+AGG 0.505170 tig0018036:+70623 Msa1363260:CDS
GGAAGCGGCACCGTGGGCGG+AGG 0.505445 tig0018036:+70446 Msa1363260:CDS
GGCTGCGGATTCAGACCTGC+AGG 0.512151 tig0018036:+70776 Msa1363260:CDS
CCTCAATTATATGCCTATCA+AGG 0.515740 tig0018036:-71097 None:intergenic
CCGAGGATTTCCTGAAAATG+TGG 0.519742 tig0018036:+70871 Msa1363260:CDS
CAACCCTTTCATCTCTCGCC+TGG 0.520699 tig0018036:-70646 None:intergenic
ACCATCATTTCGAAGAGCGT+TGG 0.521062 tig0018036:-69445 None:intergenic
TTGTTTGGAGTACTTGGAAG+CGG 0.521954 tig0018036:+70431 Msa1363260:CDS
TTCTCACCTTACCACTCTCC+TGG 0.528095 tig0018036:+71138 Msa1363260:CDS
TTCAACTCTGCACTCACCGC+CGG 0.531671 tig0018036:+69376 Msa1363260:CDS
GCCTGCAGTTCACAGGTTTG+AGG 0.532007 tig0018036:+70932 Msa1363260:CDS
TTCGGGTTCGGGTTGTGTTG+CGG 0.534075 tig0018036:-69194 None:intergenic
ATATCCATTGGCAACTTCAG+TGG 0.534213 tig0018036:-70550 None:intergenic
TATATGCCTATCAAGGCCCT+TGG 0.534380 tig0018036:-71090 None:intergenic
TCTTGAATCTGTTGGAGCTG+TGG 0.536388 tig0018036:+70509 Msa1363260:CDS
TGCGGATTGTGATGATGTTG+AGG 0.540270 tig0018036:+69804 Msa1363260:CDS
TCCGCAATTTCAACAAGATA+CGG 0.541856 tig0018036:-69787 None:intergenic
TTCTCAGAATGATCTTCGGA+AGG 0.542018 tig0018036:+70695 Msa1363260:CDS
TGTTGCGGAAGTGGATATTG+TGG 0.542327 tig0018036:-69179 None:intergenic
GAAGGTGAATCGGGTAATTG+AGG 0.543986 tig0018036:-69217 None:intergenic
CATTCTGAGAAGAATTCTCA+TGG 0.544991 tig0018036:-70683 None:intergenic
TTCAAACGGACATTCCACTT+CGG 0.546718 tig0018036:+69315 Msa1363260:CDS
TTGGATGAGGAGAGCATCCA+AGG 0.549081 tig0018036:+71073 Msa1363260:CDS
TAGGAAGAAGCTTATGAAAG+AGG 0.549581 tig0018036:+69867 Msa1363260:CDS
TTAGGGAATTCTAAAGTCGA+AGG 0.551923 tig0018036:-72624 None:intergenic
GACAAGCAGATAATTTACAT+TGG 0.554762 tig0018036:+70817 Msa1363260:CDS
GTTGTTTGTTGGGATTGGAA+AGG 0.555381 tig0018036:+70974 Msa1363260:CDS
CCAGGAAAATATCTTTGTTG+CGG 0.555704 tig0018036:+72416 Msa1363260:three_prime_UTR
CGACATTGGGTTGAGAAGAC+CGG 0.556837 tig0018036:-69395 None:intergenic
TGTTGGCTTCTAAAGAGGCT+AGG 0.556855 tig0018036:+71003 Msa1363260:CDS
GTGTAAGTAGAAGGTGAATC+GGG 0.559723 tig0018036:-69226 None:intergenic
CCTTGATAGGCATATAATTG+AGG 0.562443 tig0018036:+71097 Msa1363260:CDS
GTACTTGGAAGCGGCACCGT+GGG 0.570304 tig0018036:+70440 Msa1363260:CDS
ATTCAAGACGAAGTTCAGAC+AGG 0.573714 tig0018036:-70494 None:intergenic
GTTTCCACTGAAGTTGCCAA+TGG 0.576467 tig0018036:+70546 Msa1363260:CDS
GCCGTATCTTGTTGAAATTG+CGG 0.578453 tig0018036:+69786 Msa1363260:CDS
ATGATTGGTGAAAATCTACC+AGG 0.579478 tig0018036:-69262 None:intergenic
CTTACTTAAACTTATTCGTG+TGG 0.579768 tig0018036:+70599 Msa1363260:CDS
GATTGCCCTAATATTCAAAG+AGG 0.580781 tig0018036:+71212 Msa1363260:CDS
TATTCAGCTTGTATTTGTCA+GGG 0.581973 tig0018036:+72354 Msa1363260:three_prime_UTR
CTGTTGCCAGGAGAGTGGTA+AGG 0.583623 tig0018036:-71144 None:intergenic
AGGTTAGCAGAGTTACCGCT+AGG 0.584095 tig0018036:+70952 Msa1363260:CDS
CTTGGAAGCGGCACCGTGGG+CGG 0.586200 tig0018036:+70443 Msa1363260:CDS
CGAGGATTTCCTGAAAATGT+GGG 0.586794 tig0018036:+70872 Msa1363260:CDS
AAGGCCAGGCGAGAGATGAA+AGG 0.586887 tig0018036:+70642 Msa1363260:CDS
AAGGTAAAGATGAAAAGGCC+AGG 0.587709 tig0018036:+70628 Msa1363260:CDS
AGGCCAGGCGAGAGATGAAA+GGG 0.588190 tig0018036:+70643 Msa1363260:CDS
GTCATGACCCGAACCCGAAG+TGG 0.591055 tig0018036:-69329 None:intergenic
GTTGCCAATGGATATGAAGA+GGG 0.593301 tig0018036:+70558 Msa1363260:CDS
TACACCGTTCGTTACTCACC+TGG 0.594073 tig0018036:+69244 Msa1363260:CDS
GATAGGCATATAATTGAGGA+TGG 0.598325 tig0018036:+71101 Msa1363260:CDS
CAAAATCCCAAATATGACAA+GGG 0.598421 tig0018036:-72306 None:intergenic
ATTTCCTGTTGCCAGGAGAG+TGG 0.604791 tig0018036:-71149 None:intergenic
GAGTGTGTGAAATCCATGAT+TGG 0.608504 tig0018036:-69277 None:intergenic
ATTGCCCTAATATTCAAAGA+GGG 0.609062 tig0018036:+71213 Msa1363260:CDS
ACAAGGGGTGTAAATATCAG+TGG 0.622170 tig0018036:-72290 None:intergenic
AGGGCTTTCTGGAAGAGGAA+CGG 0.622207 tig0018036:+71254 Msa1363260:CDS
TGCAATTGGATTTGATGCTG+GGG 0.622313 tig0018036:+70401 Msa1363260:CDS
CTGTAGATAGAAGTCATCAC+AGG 0.622768 tig0018036:+72470 Msa1363260:three_prime_UTR
AAAATCCCAAATATGACAAG+GGG 0.629526 tig0018036:-72305 None:intergenic
CAGGCGAGAGATGAAAGGGT+TGG 0.630999 tig0018036:+70647 Msa1363260:CDS
AGTTGCCAATGGATATGAAG+AGG 0.632608 tig0018036:+70557 Msa1363260:CDS
TCGGAAGGAGTCGTTATACT+CGG 0.634936 tig0018036:+70710 Msa1363260:CDS
TGAAGAGGGGAATGATAACG+AGG 0.636725 tig0018036:+70572 Msa1363260:CDS
TGGAAGAAAACACACTGCAG+TGG 0.636790 tig0018036:-72396 None:intergenic
TCAAAATCCCAAATATGACA+AGG 0.640656 tig0018036:-72307 None:intergenic
TCAAGTGTGCTCAACTGATG+CGG 0.641927 tig0018036:-71312 None:intergenic
TGTGATGACTTCTATCTACA+GGG 0.653438 tig0018036:-72468 None:intergenic
GGTGTTTACTTCTCAAAACG+TGG 0.654701 tig0018036:+71024 Msa1363260:CDS
GAAACGGCAGACTATATACA+TGG 0.655112 tig0018036:+71359 Msa1363260:three_prime_UTR
TGGATGAGGAGAGCATCCAA+GGG 0.664506 tig0018036:+71074 Msa1363260:CDS
AGTACTTGGAAGCGGCACCG+TGG 0.664859 tig0018036:+70439 Msa1363260:CDS
TTGCCAATGGATATGAAGAG+GGG 0.674831 tig0018036:+70559 Msa1363260:CDS
GATTGATAGACAGATTGCCG+AGG 0.682553 tig0018036:+70854 Msa1363260:CDS
GGAGGATGAAGAAGACAAAG+TGG 0.683460 tig0018036:+70464 Msa1363260:CDS
TCTACCAGGTGAGTAACGAA+CGG 0.692816 tig0018036:-69248 None:intergenic
GTCTGCCGTTTCCTCCACCG+TGG 0.701509 tig0018036:-71348 None:intergenic
CATTGGGTTGAGAAGACCGG+CGG 0.715075 tig0018036:-69392 None:intergenic
CAACTCATACAACTATAGCG+TGG 0.730265 tig0018036:-72259 None:intergenic
AATCCCAACAAACAACCTAG+CGG 0.767443 tig0018036:-70967 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATTTATCAAATTACTA+CGG + tig0018036:70296-70315 Msa1363260:intron 15.0%
!!! TTGTTTTTTTTTTTGTGTTG+TGG + tig0018036:69937-69956 Msa1363260:intron 20.0%
!!! TGTTTTTTTTTTTGTGTTGT+GGG + tig0018036:69938-69957 Msa1363260:intron 20.0%
!!! GTTTGTTTAATTGTTGTTTA+TGG + tig0018036:69961-69980 Msa1363260:intron 20.0%
!! TTGTAGACAATTATAGTTAT+AGG + tig0018036:70140-70159 Msa1363260:intron 20.0%
!! TCTATTTATCAAATTACTAC+GGG + tig0018036:70297-70316 Msa1363260:intron 20.0%
!!! TCTGTTTTTTGTTTTATCTT+AGG + tig0018036:70371-70390 Msa1363260:intron 20.0%
!!! TTTTGTTTTATCTTAGGTTT+CGG + tig0018036:70377-70396 Msa1363260:intron 20.0%
!!! AGATAATTTACATTGGATTT+TGG + tig0018036:70824-70843 Msa1363260:CDS 20.0%
!! TTAAATACTGATAATCATAG+AGG - tig0018036:71427-71446 None:intergenic 20.0%
!!! TTTTTTTCTTTTCATCCTTT+TGG + tig0018036:72145-72164 Msa1363260:intron 20.0%
!! AAAACAAAAGAATAGTCAAT+GGG - tig0018036:72208-72227 None:intergenic 20.0%
!! AAAAACAAAAGAATAGTCAA+TGG - tig0018036:72209-72228 None:intergenic 20.0%
!! ACTAGTTCATTAACATTAAA+CGG - tig0018036:72549-72568 None:intergenic 20.0%
!!! TTAAAATTTGGCACATTTTA+GGG - tig0018036:72644-72663 None:intergenic 20.0%
!!! ATTAAAATTTGGCACATTTT+AGG - tig0018036:72645-72664 None:intergenic 20.0%
!! CTGCTGAATTTATTAAAATT+TGG - tig0018036:72656-72675 None:intergenic 20.0%
! ATTTGTACGTTGTTGAATAT+CGG - tig0018036:69479-69498 None:intergenic 25.0%
! AGAAATTCGATTCATCATTA+GGG - tig0018036:69575-69594 None:intergenic 25.0%
!!! TAAAGTTTTGGGTATTTTGA+AGG + tig0018036:69897-69916 Msa1363260:CDS 25.0%
!!! GTTTTTTTTTTTGTGTTGTG+GGG + tig0018036:69939-69958 Msa1363260:intron 25.0%
!!! TTTTGCTCTGTTTTATTAAC+TGG + tig0018036:70052-70071 Msa1363260:intron 25.0%
! TGGATTATAATGCAAATTGT+AGG + tig0018036:70072-70091 Msa1363260:intron 25.0%
! ATAATGCAAATTGTAGGATT+AGG + tig0018036:70078-70097 Msa1363260:intron 25.0%
! CAACCAAAATCATCATAAAA+GGG - tig0018036:71056-71075 None:intergenic 25.0%
!! TTGAAGATGATATTTTTCCA+CGG + tig0018036:71331-71350 Msa1363260:exon 25.0%
!!! CTTGTTATTTCCAACAAAAT+AGG - tig0018036:71567-71586 None:intergenic 25.0%
! TATAATTCTAGTATCTCTCT+GGG - tig0018036:71826-71845 None:intergenic 25.0%
! TTATAATTCTAGTATCTCTC+TGG - tig0018036:71827-71846 None:intergenic 25.0%
! GTGGAATATACTAATTTAGT+AGG - tig0018036:72380-72399 None:intergenic 25.0%
!! CTAATTGAATACTAGTTTGA+AGG + tig0018036:72592-72611 Msa1363260:three_prime_UTR 25.0%
TCTTCTTCACCAATTTCAAA+CGG + tig0018036:69301-69320 Msa1363260:CDS 30.0%
TTTGTACGTTGTTGAATATC+GGG - tig0018036:69478-69497 None:intergenic 30.0%
! AAGAAGTTGCATTGTTGATT+GGG - tig0018036:69513-69532 None:intergenic 30.0%
TCGATCTTGTGCAATAATTT+GGG - tig0018036:69548-69567 None:intergenic 30.0%
CAGAAATTCGATTCATCATT+AGG - tig0018036:69576-69595 None:intergenic 30.0%
GAATCATTGAAATGATTACC+AGG - tig0018036:69619-69638 None:intergenic 30.0%
!! TTTGAGGTTGATGTATTGTA+AGG + tig0018036:69840-69859 Msa1363260:CDS 30.0%
TGATGTATTGTAAGGATCTT+AGG + tig0018036:69848-69867 Msa1363260:CDS 30.0%
!!! AGAGGATGTTTCTAAAGTTT+TGG + tig0018036:69885-69904 Msa1363260:CDS 30.0%
!!! GAGGATGTTTCTAAAGTTTT+GGG + tig0018036:69886-69905 Msa1363260:CDS 30.0%
!! TTGATAATGTAGCATACTGT+AGG + tig0018036:70009-70028 Msa1363260:intron 30.0%
CTTACTTAAACTTATTCGTG+TGG + tig0018036:70599-70618 Msa1363260:CDS 30.0%
TCTTGAAGGTAAAGATGAAA+AGG + tig0018036:70623-70642 Msa1363260:CDS 30.0%
ATTCTTCTCAGAATGATCTT+CGG + tig0018036:70691-70710 Msa1363260:CDS 30.0%
GACAAGCAGATAATTTACAT+TGG + tig0018036:70817-70836 Msa1363260:CDS 30.0%
! ATTATCTGAAGCACATTCTA+AGG + tig0018036:70908-70927 Msa1363260:CDS 30.0%
! GTTCCCTTTTATGATGATTT+TGG + tig0018036:71050-71069 Msa1363260:CDS 30.0%
CCAACCAAAATCATCATAAA+AGG - tig0018036:71057-71076 None:intergenic 30.0%
!! CCTTTTATGATGATTTTGGT+TGG + tig0018036:71054-71073 Msa1363260:CDS 30.0%
TTTAATCGCTTCTTGAATTC+CGG + tig0018036:71185-71204 Msa1363260:CDS 30.0%
ATTGCCCTAATATTCAAAGA+GGG + tig0018036:71213-71232 Msa1363260:CDS 30.0%
CAAACCCTCTTTGAATATTA+GGG - tig0018036:71220-71239 None:intergenic 30.0%
TCAAACCCTCTTTGAATATT+AGG - tig0018036:71221-71240 None:intergenic 30.0%
TAATTCGTAATTGTCTTGTC+CGG - tig0018036:71289-71308 None:intergenic 30.0%
! CTAAAACTAGTTTCACACAA+AGG - tig0018036:71490-71509 None:intergenic 30.0%
! GTTATTTCCAACAAAATAGG+AGG - tig0018036:71564-71583 None:intergenic 30.0%
AATCACACAACAGATATGAA+GGG - tig0018036:71616-71635 None:intergenic 30.0%
AAATCACACAACAGATATGA+AGG - tig0018036:71617-71636 None:intergenic 30.0%
!!! GACAAGGGATTTATTTTGTT+GGG - tig0018036:71732-71751 None:intergenic 30.0%
!!! AGACAAGGGATTTATTTTGT+TGG - tig0018036:71733-71752 None:intergenic 30.0%
ACTTTCTTGTTACATTCTGT+TGG + tig0018036:71873-71892 Msa1363260:intron 30.0%
!!! AACCACCAATTATTTTTGCT+CGG + tig0018036:72054-72073 Msa1363260:intron 30.0%
AAAATCCCAAATATGACAAG+GGG - tig0018036:72308-72327 None:intergenic 30.0%
CAAAATCCCAAATATGACAA+GGG - tig0018036:72309-72328 None:intergenic 30.0%
TCAAAATCCCAAATATGACA+AGG - tig0018036:72310-72329 None:intergenic 30.0%
!! GTCATATTTGGGATTTTGAT+TGG + tig0018036:72311-72330 Msa1363260:three_prime_UTR 30.0%
TATTCAGCTTGTATTTGTCA+GGG + tig0018036:72354-72373 Msa1363260:three_prime_UTR 30.0%
GTTCATTAACATTAAACGGT+TGG - tig0018036:72545-72564 None:intergenic 30.0%
!! TTACAGGCTAATTTGCTTTA+TGG + tig0018036:72692-72711 Msa1363260:three_prime_UTR 30.0%
!!! TGTTGTTGTTGTTGGTTTTG+AGG - tig0018036:69118-69137 None:intergenic 35.0%
ATGATTGGTGAAAATCTACC+AGG - tig0018036:69265-69284 None:intergenic 35.0%
! TGGTAGATTTTCACCAATCA+TGG + tig0018036:69264-69283 Msa1363260:CDS 35.0%
! TTGAATTTGGTGAAGCTTGA+AGG - tig0018036:69361-69380 None:intergenic 35.0%
GAAGAAGTTGCATTGTTGAT+TGG - tig0018036:69514-69533 None:intergenic 35.0%
CGATCTTGTGCAATAATTTG+GGG - tig0018036:69547-69566 None:intergenic 35.0%
CTCGATCTTGTGCAATAATT+TGG - tig0018036:69549-69568 None:intergenic 35.0%
AAGCGTAAGCTTAATATCAC+TGG - tig0018036:69647-69666 None:intergenic 35.0%
!! AGCTTACGCTTAGTTCTAAA+TGG + tig0018036:69656-69675 Msa1363260:intron 35.0%
TCCGCAATTTCAACAAGATA+CGG - tig0018036:69790-69809 None:intergenic 35.0%
! TGATGATGTTGAGGTTTATG+TGG + tig0018036:69813-69832 Msa1363260:CDS 35.0%
TAGGAAGAAGCTTATGAAAG+AGG + tig0018036:69867-69886 Msa1363260:CDS 35.0%
! ACTCTTTTAATCCGAAGTGT+CGG - tig0018036:70235-70254 None:intergenic 35.0%
!! TTCGGATTAAAAGAGTGTCT+GGG + tig0018036:70239-70258 Msa1363260:intron 35.0%
ACAAATCCATGAATCAGACA+AGG - tig0018036:70352-70371 None:intergenic 35.0%
!! TTTGTCTTGTTTGGAGTACT+TGG + tig0018036:70425-70444 Msa1363260:CDS 35.0%
! CATTCTGAGAAGAATTCTCA+TGG - tig0018036:70686-70705 None:intergenic 35.0%
! TTGTTTGTTGGGATTGGAAA+GGG + tig0018036:70975-70994 Msa1363260:CDS 35.0%
!!! ATGATGATTTTGGTTGGATG+AGG + tig0018036:71060-71079 Msa1363260:CDS 35.0%
CCTCAATTATATGCCTATCA+AGG - tig0018036:71100-71119 None:intergenic 35.0%
CCTTGATAGGCATATAATTG+AGG + tig0018036:71097-71116 Msa1363260:CDS 35.0%
GATAGGCATATAATTGAGGA+TGG + tig0018036:71101-71120 Msa1363260:CDS 35.0%
! AACAGGAAATTTTGCTTGCT+TGG + tig0018036:71162-71181 Msa1363260:CDS 35.0%
AATATTAGGGCAATCTTCAC+CGG - tig0018036:71207-71226 None:intergenic 35.0%
GATTGCCCTAATATTCAAAG+AGG + tig0018036:71212-71231 Msa1363260:CDS 35.0%
! TTCAAAGAGGGTTTGAAGTT+TGG + tig0018036:71225-71244 Msa1363260:CDS 35.0%
! AAGATGATATTTTTCCACGG+TGG + tig0018036:71334-71353 Msa1363260:exon 35.0%
ACGATCATGAGAAGGTTAAA+AGG - tig0018036:71392-71411 None:intergenic 35.0%
ATATAGAGACGATCATGAGA+AGG - tig0018036:71400-71419 None:intergenic 35.0%
AAATAGTGTCATCTTCTTCC+AGG - tig0018036:71534-71553 None:intergenic 35.0%
! ATTGTCACCTCCTATTTTGT+TGG + tig0018036:71554-71573 Msa1363260:intron 35.0%
GGATTGTACTCTTGATAAGA+AGG + tig0018036:71681-71700 Msa1363260:intron 35.0%
GTACTCTTGATAAGAAGGAA+CGG + tig0018036:71686-71705 Msa1363260:intron 35.0%
TACTCTTGATAAGAAGGAAC+GGG + tig0018036:71687-71706 Msa1363260:intron 35.0%
ATAAGAAGGAACGGGTAAAA+GGG + tig0018036:71695-71714 Msa1363260:intron 35.0%
CAGTCTCATTGATAAGACAA+GGG - tig0018036:71747-71766 None:intergenic 35.0%
TATCTTGCTACAACATGCAT+GGG - tig0018036:71780-71799 None:intergenic 35.0%
TTATCTTGCTACAACATGCA+TGG - tig0018036:71781-71800 None:intergenic 35.0%
! TGTTACATTCTGTTGGTAAG+TGG + tig0018036:71880-71899 Msa1363260:intron 35.0%
TAAACATCCTGGCATACTAA+AGG - tig0018036:71924-71943 None:intergenic 35.0%
!!! ACCACCAATTATTTTTGCTC+GGG + tig0018036:72055-72074 Msa1363260:intron 35.0%
AATGGGATGACAATATTGGT+CGG - tig0018036:72191-72210 None:intergenic 35.0%
AGTCAATGGGATGACAATAT+TGG - tig0018036:72195-72214 None:intergenic 35.0%
! TTTTTGTCTCTCTCTTATGC+AGG + tig0018036:72225-72244 Msa1363260:intron 35.0%
TACAACTATAGCGTGGTATA+CGG - tig0018036:72255-72274 None:intergenic 35.0%
TTTACACCCCTTGTCATATT+TGG + tig0018036:72299-72318 Msa1363260:three_prime_UTR 35.0%
TTACACCCCTTGTCATATTT+GGG + tig0018036:72300-72319 Msa1363260:three_prime_UTR 35.0%
CTATTCAGCTTGTATTTGTC+AGG + tig0018036:72353-72372 Msa1363260:three_prime_UTR 35.0%
CCAGGAAAATATCTTTGTTG+CGG + tig0018036:72416-72435 Msa1363260:three_prime_UTR 35.0%
TGTGATGACTTCTATCTACA+GGG - tig0018036:72471-72490 None:intergenic 35.0%
!! TTAGGGAATTCTAAAGTCGA+AGG - tig0018036:72627-72646 None:intergenic 35.0%
!!! TTGGTTTTGAGGTTTGAGGA+GGG - tig0018036:69107-69126 None:intergenic 40.0%
!!! GTTGTTGGTTTTGAGGTTTG+AGG - tig0018036:69111-69130 None:intergenic 40.0%
! TGGGTTGTTGTTGTTGTTGT+TGG - tig0018036:69126-69145 None:intergenic 40.0%
TGAATCGGGTAATTGAGGTT+CGG - tig0018036:69215-69234 None:intergenic 40.0%
GTGTAAGTAGAAGGTGAATC+GGG - tig0018036:69229-69248 None:intergenic 40.0%
GGTGTAAGTAGAAGGTGAAT+CGG - tig0018036:69230-69249 None:intergenic 40.0%
TAACGAACGGTGTAAGTAGA+AGG - tig0018036:69238-69257 None:intergenic 40.0%
GAGTGTGTGAAATCCATGAT+TGG - tig0018036:69280-69299 None:intergenic 40.0%
! GTGGAATGTCCGTTTGAAAT+TGG - tig0018036:69313-69332 None:intergenic 40.0%
TTCAAACGGACATTCCACTT+CGG + tig0018036:69315-69334 Msa1363260:CDS 40.0%
TGGTGAAGCTTGAAGGAAAA+GGG - tig0018036:69354-69373 None:intergenic 40.0%
TTGGTGAAGCTTGAAGGAAA+AGG - tig0018036:69355-69374 None:intergenic 40.0%
CTATTATCTTCACGTAGTCC+TGG + tig0018036:69598-69617 Msa1363260:intron 40.0%
TTTCCGTGAAGCTTTCTGAT+CGG + tig0018036:69734-69753 Msa1363260:intron 40.0%
GCCGTATCTTGTTGAAATTG+CGG + tig0018036:69786-69805 Msa1363260:CDS 40.0%
AGGTTTATGTGGAGACTTTG+AGG + tig0018036:69824-69843 Msa1363260:CDS 40.0%
!! CTTCGGATTAAAAGAGTGTC+TGG + tig0018036:70238-70257 Msa1363260:intron 40.0%
CTGCAATTGGATTTGATGCT+GGG + tig0018036:70400-70419 Msa1363260:CDS 40.0%
TGCAATTGGATTTGATGCTG+GGG + tig0018036:70401-70420 Msa1363260:CDS 40.0%
! TTGTTTGGAGTACTTGGAAG+CGG + tig0018036:70431-70450 Msa1363260:CDS 40.0%
ATTCAAGACGAAGTTCAGAC+AGG - tig0018036:70497-70516 None:intergenic 40.0%
GAACTTCGTCTTGAATCTGT+TGG + tig0018036:70501-70520 Msa1363260:CDS 40.0%
ATATCCATTGGCAACTTCAG+TGG - tig0018036:70553-70572 None:intergenic 40.0%
AGTTGCCAATGGATATGAAG+AGG + tig0018036:70557-70576 Msa1363260:CDS 40.0%
GTTGCCAATGGATATGAAGA+GGG + tig0018036:70558-70577 Msa1363260:CDS 40.0%
TTGCCAATGGATATGAAGAG+GGG + tig0018036:70559-70578 Msa1363260:CDS 40.0%
ATTCCCCTCTTCATATCCAT+TGG - tig0018036:70565-70584 None:intergenic 40.0%
CTTATTCGTGTGGTTCTTGA+AGG + tig0018036:70609-70628 Msa1363260:CDS 40.0%
AAGGTAAAGATGAAAAGGCC+AGG + tig0018036:70628-70647 Msa1363260:CDS 40.0%
TTCTCAGAATGATCTTCGGA+AGG + tig0018036:70695-70714 Msa1363260:CDS 40.0%
!!! TACTTCGTCACCACTTTTTG+CGG + tig0018036:70754-70773 Msa1363260:CDS 40.0%
! CAATTTGACTTACATCCTGC+AGG - tig0018036:70794-70813 None:intergenic 40.0%
!! CCACATTTTCAGGAAATCCT+CGG - tig0018036:70874-70893 None:intergenic 40.0%
CGAGGATTTCCTGAAAATGT+GGG + tig0018036:70872-70891 Msa1363260:CDS 40.0%
! ATTCAGATGCCCACATTTTC+AGG - tig0018036:70884-70903 None:intergenic 40.0%
TTACCGCTAGGTTGTTTGTT+GGG + tig0018036:70964-70983 Msa1363260:CDS 40.0%
AATCCCAACAAACAACCTAG+CGG - tig0018036:70970-70989 None:intergenic 40.0%
! GTTGTTTGTTGGGATTGGAA+AGG + tig0018036:70974-70993 Msa1363260:CDS 40.0%
!! ACAGTTGTTGGCTTCTAAAG+AGG + tig0018036:70998-71017 Msa1363260:CDS 40.0%
GGTGTTTACTTCTCAAAACG+TGG + tig0018036:71024-71043 Msa1363260:CDS 40.0%
AAGCAAAATTTCCTGTTGCC+AGG - tig0018036:71159-71178 None:intergenic 40.0%
! AAAGAGGGTTTGAAGTTTGG+TGG + tig0018036:71228-71247 Msa1363260:CDS 40.0%
! GTTTGAAGTTTGGTGGAGAA+GGG + tig0018036:71235-71254 Msa1363260:CDS 40.0%
! ATGATATTTTTCCACGGTGG+AGG + tig0018036:71337-71356 Msa1363260:three_prime_UTR 40.0%
GAAACGGCAGACTATATACA+TGG + tig0018036:71359-71378 Msa1363260:three_prime_UTR 40.0%
TTAAGCCTTCTGTCAAACTC+TGG + tig0018036:71443-71462 Msa1363260:intron 40.0%
TTCTACCAGAGTTTGACAGA+AGG - tig0018036:71451-71470 None:intergenic 40.0%
CTGTTGTGTGATTTACACCT+AGG + tig0018036:71623-71642 Msa1363260:intron 40.0%
! ACCTAGGCTGATCATGATTT+TGG + tig0018036:71639-71658 Msa1363260:intron 40.0%
TCCAAAATCATGATCAGCCT+AGG - tig0018036:71643-71662 None:intergenic 40.0%
GATAAGAAGGAACGGGTAAA+AGG + tig0018036:71694-71713 Msa1363260:intron 40.0%
GCAGTCTCATTGATAAGACA+AGG - tig0018036:71748-71767 None:intergenic 40.0%
GTCTTATCAATGAGACTGCT+TGG + tig0018036:71749-71768 Msa1363260:intron 40.0%
ATCTTGCTACAACATGCATG+GGG - tig0018036:71779-71798 None:intergenic 40.0%
ACATCGTCAACTAAACATCC+TGG - tig0018036:71935-71954 None:intergenic 40.0%
! ACCACCAAAATTTTCGTGCT+CGG + tig0018036:71980-71999 Msa1363260:intron 40.0%
ACCCGAGCAAAAATAATTGG+TGG - tig0018036:72059-72078 None:intergenic 40.0%
CAGACCCGAGCAAAAATAAT+TGG - tig0018036:72062-72081 None:intergenic 40.0%
TCACAAACTTGCACTCCAAA+AGG - tig0018036:72163-72182 None:intergenic 40.0%
CAACTCATACAACTATAGCG+TGG - tig0018036:72262-72281 None:intergenic 40.0%
! ACAAGGGGTGTAAATATCAG+TGG - tig0018036:72293-72312 None:intergenic 40.0%
! CCGCAACAAAGATATTTTCC+TGG - tig0018036:72419-72438 None:intergenic 40.0%
GTTGCGGTCAAACTAATTTC+TGG + tig0018036:72432-72451 Msa1363260:three_prime_UTR 40.0%
CTGTGATGACTTCTATCTAC+AGG - tig0018036:72472-72491 None:intergenic 40.0%
CTGTAGATAGAAGTCATCAC+AGG + tig0018036:72470-72489 Msa1363260:three_prime_UTR 40.0%
TAAATTCAGCAGCTCTGTAC+AGG + tig0018036:72664-72683 Msa1363260:three_prime_UTR 40.0%
TTGAGGTTTGAGGAGGGAAT+TGG - tig0018036:69101-69120 None:intergenic 45.0%
!!! GTTGGTTTTGAGGTTTGAGG+AGG - tig0018036:69108-69127 None:intergenic 45.0%
!! CGTCGTTTAGGTTTGGTGAT+GGG - tig0018036:69145-69164 None:intergenic 45.0%
! ACACTTGCGTCGTTTAGGTT+TGG - tig0018036:69152-69171 None:intergenic 45.0%
TGTTGCGGAAGTGGATATTG+TGG - tig0018036:69182-69201 None:intergenic 45.0%
GAATCGGGTAATTGAGGTTC+GGG - tig0018036:69214-69233 None:intergenic 45.0%
GAAGGTGAATCGGGTAATTG+AGG - tig0018036:69220-69239 None:intergenic 45.0%
TCTACCAGGTGAGTAACGAA+CGG - tig0018036:69251-69270 None:intergenic 45.0%
TCAAACGGACATTCCACTTC+GGG + tig0018036:69316-69335 Msa1363260:CDS 45.0%
GGTGAGTGCAGAGTTGAATT+TGG - tig0018036:69374-69393 None:intergenic 45.0%
TCCAACGCTCTTCGAAATGA+TGG + tig0018036:69444-69463 Msa1363260:CDS 45.0%
! ACCATCATTTCGAAGAGCGT+TGG - tig0018036:69448-69467 None:intergenic 45.0%
! TGCGGATTGTGATGATGTTG+AGG + tig0018036:69804-69823 Msa1363260:CDS 45.0%
! CGGTGATACATAGGCTTTGA+CGG - tig0018036:70215-70234 None:intergenic 45.0%
CCTATGTATCACCGACACTT+CGG + tig0018036:70221-70240 Msa1363260:intron 45.0%
ACGTAACCAACCATACGTCT+CGG - tig0018036:70268-70287 None:intergenic 45.0%
! AAATTACTACGGGTGTTGCG+TGG + tig0018036:70307-70326 Msa1363260:intron 45.0%
TGGTGTCCTTGTCTGATTCA+TGG + tig0018036:70343-70362 Msa1363260:intron 45.0%
TCTTAGGTTTCGGCTGCAAT+TGG + tig0018036:70387-70406 Msa1363260:intron 45.0%
GCTGCAATTGGATTTGATGC+TGG + tig0018036:70399-70418 Msa1363260:CDS 45.0%
!! TGCTGGGGTTTTGTCTTGTT+TGG + tig0018036:70416-70435 Msa1363260:CDS 45.0%
GGAGGATGAAGAAGACAAAG+TGG + tig0018036:70464-70483 Msa1363260:CDS 45.0%
TCTTGAATCTGTTGGAGCTG+TGG + tig0018036:70509-70528 Msa1363260:CDS 45.0%
!!! AGCTGTGGAGGTTTTGAAGA+GGG + tig0018036:70524-70543 Msa1363260:CDS 45.0%
GTTTCCACTGAAGTTGCCAA+TGG + tig0018036:70546-70565 Msa1363260:CDS 45.0%
! TGAAGAGGGGAATGATAACG+AGG + tig0018036:70572-70591 Msa1363260:CDS 45.0%
TCGGAAGGAGTCGTTATACT+CGG + tig0018036:70710-70729 Msa1363260:CDS 45.0%
!!! ACTTCGTCACCACTTTTTGC+GGG + tig0018036:70755-70774 Msa1363260:CDS 45.0%
GATTGATAGACAGATTGCCG+AGG + tig0018036:70854-70873 Msa1363260:CDS 45.0%
CCGAGGATTTCCTGAAAATG+TGG + tig0018036:70871-70890 Msa1363260:CDS 45.0%
GTTACCGCTAGGTTGTTTGT+TGG + tig0018036:70963-70982 Msa1363260:CDS 45.0%
! GCTAGGTTGTTTGTTGGGAT+TGG + tig0018036:70969-70988 Msa1363260:CDS 45.0%
GATTGGAAAGGGACAGTTGT+TGG + tig0018036:70986-71005 Msa1363260:CDS 45.0%
!! TGTTGGCTTCTAAAGAGGCT+AGG + tig0018036:71003-71022 Msa1363260:CDS 45.0%
TATATGCCTATCAAGGCCCT+TGG - tig0018036:71093-71112 None:intergenic 45.0%
! GGTTTGAAGTTTGGTGGAGA+AGG + tig0018036:71234-71253 Msa1363260:CDS 45.0%
TCAAGTGTGCTCAACTGATG+CGG - tig0018036:71315-71334 None:intergenic 45.0%
! TTTTTCCACGGTGGAGGAAA+CGG + tig0018036:71343-71362 Msa1363260:three_prime_UTR 45.0%
CAATGTCTTCATGCTTTGCC+TGG + tig0018036:71513-71532 Msa1363260:intron 45.0%
GGACTCTCTTGTCAGTTGAA+TGG + tig0018036:71660-71679 Msa1363260:intron 45.0%
AGTCACACCTTTAGTATGCC+AGG + tig0018036:71914-71933 Msa1363260:intron 45.0%
! CCACCAAAATTTTCGTGCTC+GGG + tig0018036:71981-72000 Msa1363260:intron 45.0%
! AGACCCGAGCACGAAAATTT+TGG - tig0018036:71987-72006 None:intergenic 45.0%
TGGAAGAAAACACACTGCAG+TGG - tig0018036:72399-72418 None:intergenic 45.0%
! ACTGCAGTGTGTTTTCTTCC+AGG + tig0018036:72398-72417 Msa1363260:three_prime_UTR 45.0%
CTCTGTACAGGTCTCATTAC+AGG + tig0018036:72676-72695 Msa1363260:three_prime_UTR 45.0%
!! GCGTCGTTTAGGTTTGGTGA+TGG - tig0018036:69146-69165 None:intergenic 50.0%
TCACGACACTTGCGTCGTTT+AGG - tig0018036:69157-69176 None:intergenic 50.0%
! GGTAATTGAGGTTCGGGTTC+GGG - tig0018036:69208-69227 None:intergenic 50.0%
! GGGTAATTGAGGTTCGGGTT+CGG - tig0018036:69209-69228 None:intergenic 50.0%
TACACCGTTCGTTACTCACC+TGG + tig0018036:69244-69263 Msa1363260:CDS 50.0%
!! CGACATTGGGTTGAGAAGAC+CGG - tig0018036:69398-69417 None:intergenic 50.0%
!! GGACTTGATCGGGTTTTGTC+CGG - tig0018036:69427-69446 None:intergenic 50.0%
!! GAAGAGCGTTGGACTTGATC+GGG - tig0018036:69437-69456 None:intergenic 50.0%
!! CGAAGAGCGTTGGACTTGAT+CGG - tig0018036:69438-69457 None:intergenic 50.0%
CCACCGATCAGAAAGCTTCA+CGG - tig0018036:69740-69759 None:intergenic 50.0%
!! CCGAAGTGTCGGTGATACAT+AGG - tig0018036:70224-70243 None:intergenic 50.0%
TGAATCTGTTGGAGCTGTGG+AGG + tig0018036:70512-70531 Msa1363260:CDS 50.0%
!!! GAGCTGTGGAGGTTTTGAAG+AGG + tig0018036:70523-70542 Msa1363260:CDS 50.0%
ACCTCAAACCTGTGAACTGC+AGG - tig0018036:70936-70955 None:intergenic 50.0%
AGGTTAGCAGAGTTACCGCT+AGG + tig0018036:70952-70971 Msa1363260:CDS 50.0%
!! TTGGATGAGGAGAGCATCCA+AGG + tig0018036:71073-71092 Msa1363260:CDS 50.0%
!! TGGATGAGGAGAGCATCCAA+GGG + tig0018036:71074-71093 Msa1363260:CDS 50.0%
TTCTCACCTTACCACTCTCC+TGG + tig0018036:71138-71157 Msa1363260:CDS 50.0%
ATTTCCTGTTGCCAGGAGAG+TGG - tig0018036:71152-71171 None:intergenic 50.0%
TTTGGTGGAGAAGGGCTTTC+TGG + tig0018036:71243-71262 Msa1363260:CDS 50.0%
! AGGGCTTTCTGGAAGAGGAA+CGG + tig0018036:71254-71273 Msa1363260:CDS 50.0%
! CCCGAGCACGAAAATTTTGG+TGG - tig0018036:71984-72003 None:intergenic 50.0%
!! TTCGGGTTGTGTTGCGGAAG+TGG - tig0018036:69191-69210 None:intergenic 55.0%
!! TTCGGGTTCGGGTTGTGTTG+CGG - tig0018036:69197-69216 None:intergenic 55.0%
! CGGACATTCCACTTCGGGTT+CGG + tig0018036:69321-69340 Msa1363260:CDS 55.0%
! GGACATTCCACTTCGGGTTC+GGG + tig0018036:69322-69341 Msa1363260:CDS 55.0%
TTCAACTCTGCACTCACCGC+CGG + tig0018036:69376-69395 Msa1363260:CDS 55.0%
!! CATTGGGTTGAGAAGACCGG+CGG - tig0018036:69395-69414 None:intergenic 55.0%
!! CTTGATCGGGTTTTGTCCGG+CGG - tig0018036:69424-69443 None:intergenic 55.0%
CCGTGAAGCTTTCTGATCGG+TGG + tig0018036:69737-69756 Msa1363260:intron 55.0%
GACGCAGAGTCAACAGCGTT+CGG + tig0018036:69759-69778 Msa1363260:intron 55.0%
TGCGTGGCTGTGTTTGTGTC+TGG + tig0018036:70323-70342 Msa1363260:intron 55.0%
TCTTCTTCATCCTCCGCCCA+CGG - tig0018036:70459-70478 None:intergenic 55.0%
AAGGCCAGGCGAGAGATGAA+AGG + tig0018036:70642-70661 Msa1363260:CDS 55.0%
AGGCCAGGCGAGAGATGAAA+GGG + tig0018036:70643-70662 Msa1363260:CDS 55.0%
CAACCCTTTCATCTCTCGCC+TGG - tig0018036:70649-70668 None:intergenic 55.0%
CAGGCGAGAGATGAAAGGGT+TGG + tig0018036:70647-70666 Msa1363260:CDS 55.0%
!!! TCACCACTTTTTGCGGGCTG+CGG + tig0018036:70761-70780 Msa1363260:CDS 55.0%
AATCCGCAGCCCGCAAAAAG+TGG - tig0018036:70767-70786 None:intergenic 55.0%
! CTAAGGTGCCTGCAGTTCAC+AGG + tig0018036:70925-70944 Msa1363260:CDS 55.0%
GCCTGCAGTTCACAGGTTTG+AGG + tig0018036:70932-70951 Msa1363260:CDS 55.0%
GAGCATCCAAGGGCCTTGAT+AGG + tig0018036:71084-71103 Msa1363260:CDS 55.0%
CTGTTGCCAGGAGAGTGGTA+AGG - tig0018036:71147-71166 None:intergenic 55.0%
CTTACCACTCTCCTGGCAAC+AGG + tig0018036:71145-71164 Msa1363260:CDS 55.0%
! GGAGAAGGGCTTTCTGGAAG+AGG + tig0018036:71249-71268 Msa1363260:CDS 55.0%
AGAGGAACGGAGAGCAAGAC+CGG + tig0018036:71267-71286 Msa1363260:CDS 55.0%
GTCATGACCCGAACCCGAAG+TGG - tig0018036:69332-69351 None:intergenic 60.0%
! GTCTGGGACACCGAGACGTA+TGG + tig0018036:70255-70274 Msa1363260:intron 60.0%
GGGACACCGAGACGTATGGT+TGG + tig0018036:70259-70278 Msa1363260:intron 60.0%
AGTACTTGGAAGCGGCACCG+TGG + tig0018036:70439-70458 Msa1363260:CDS 60.0%
GTACTTGGAAGCGGCACCGT+GGG + tig0018036:70440-70459 Msa1363260:CDS 60.0%
!! GATCGGGTTTTGTCCGGCGG+CGG - tig0018036:69421-69440 None:intergenic 65.0%
GGCTGCGGATTCAGACCTGC+AGG + tig0018036:70776-70795 Msa1363260:CDS 65.0%
! GTCTGCCGTTTCCTCCACCG+TGG - tig0018036:71351-71370 None:intergenic 65.0%
CAACCCAATGTCGCCGCCGC+CGG + tig0018036:69405-69424 Msa1363260:CDS 70.0%
TGTCCGGCGGCGGCGACATT+GGG - tig0018036:69411-69430 None:intergenic 70.0%
TTGTCCGGCGGCGGCGACAT+TGG - tig0018036:69412-69431 None:intergenic 70.0%
CTTGGAAGCGGCACCGTGGG+CGG + tig0018036:70443-70462 Msa1363260:CDS 70.0%
! GGAAGCGGCACCGTGGGCGG+AGG + tig0018036:70446-70465 Msa1363260:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0018036 gene 69061 72741 69061 ID=Msa1363260;Name=Msa1363260
tig0018036 mRNA 69061 72741 69061 ID=Msa1363260-mRNA-1;Parent=Msa1363260;Name=Msa1363260-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.66|0.5|1|0.66|0.5|4|541|499
tig0018036 exon 69061 69465 69061 ID=Msa1363260-mRNA-1:exon:13454;Parent=Msa1363260-mRNA-1
tig0018036 exon 69766 69918 69766 ID=Msa1363260-mRNA-1:exon:13455;Parent=Msa1363260-mRNA-1
tig0018036 exon 70393 71380 70393 ID=Msa1363260-mRNA-1:exon:13456;Parent=Msa1363260-mRNA-1
tig0018036 exon 72247 72741 72247 ID=Msa1363260-mRNA-1:exon:13457;Parent=Msa1363260-mRNA-1
tig0018036 CDS 69061 69465 69061 ID=Msa1363260-mRNA-1:cds;Parent=Msa1363260-mRNA-1
tig0018036 CDS 69766 69918 69766 ID=Msa1363260-mRNA-1:cds;Parent=Msa1363260-mRNA-1
tig0018036 CDS 70393 71334 70393 ID=Msa1363260-mRNA-1:cds;Parent=Msa1363260-mRNA-1
tig0018036 three_prime_UTR 71335 71380 71335 ID=Msa1363260-mRNA-1:three_prime_utr;Parent=Msa1363260-mRNA-1
tig0018036 three_prime_UTR 72247 72741 72247 ID=Msa1363260-mRNA-1:three_prime_utr;Parent=Msa1363260-mRNA-1
Gene Sequence

>Msa1363260

ATGGCAACGACAACTACAACAACTAAAACAACAATAACCAATTCCCTCCTCAAACCTCAAAACCAACAACAACAACAACAACCCATCACCAAACCTAAACGACGCAAGTGTCGTGAAACCACAATATCCACTTCCGCAACACAACCCGAACCCGAACCTCAATTACCCGATTCACCTTCTACTTACACCGTTCGTTACTCACCTGGTAGATTTTCACCAATCATGGATTTCACACACTCTTCTTCTTCACCAATTTCAAACGGACATTCCACTTCGGGTTCGGGTCATGACCCTTTTCCTTCAAGCTTCACCAAATTCAACTCTGCACTCACCGCCGGTCTTCTCAACCCAATGTCGCCGCCGCCGGACAAAACCCGATCAAGTCCAACGCTCTTCGAAATGATGAGTCAACAGCGTTCGGCGTTGCCGTATCTTGTTGAAATTGCGGATTGTGATGATGTTGAGGTTTATGTGGAGACTTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTTATGAAAGAGGATGTTTCTAAAGTTTTGGGTATTTTGAAGGTTTCGGCTGCAATTGGATTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCACCGTGGGCGGAGGATGAAGAAGACAAAGTGGCGTCGCTCCTGTCTGAACTTCGTCTTGAATCTGTTGGAGCTGTGGAGGTTTTGAAGAGGGTTTCCACTGAAGTTGCCAATGGATATGAAGAGGGGAATGATAACGAGGAAGTCTTACTTAAACTTATTCGTGTGGTTCTTGAAGGTAAAGATGAAAAGGCCAGGCGAGAGATGAAAGGGTTGGTGTCGAAGATGCTCCATGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGTTATACTCGGCATGTGATGATTGTCTGCAATTACTTCGTCACCACTTTTTGCGGGCTGCGGATTCAGACCTGCAGGATGTAAGTCAAATTGCACGACAAGCAGATAATTTACATTGGATTTTGGATATTTTGATTGATAGACAGATTGCCGAGGATTTCCTGAAAATGTGGGCATCTGAATCAGAATTATCTGAAGCACATTCTAAGGTGCCTGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACCGCTAGGTTGTTTGTTGGGATTGGAAAGGGACAGTTGTTGGCTTCTAAAGAGGCTAGGTGTTTACTTCTCAAAACGTGGCTTGTTCCCTTTTATGATGATTTTGGTTGGATGAGGAGAGCATCCAAGGGCCTTGATAGGCATATAATTGAGGATGGTCTTAGTAACACAATTCTCACCTTACCACTCTCCTGGCAACAGGAAATTTTGCTTGCTTGGTTTAATCGCTTCTTGAATTCCGGTGAAGATTGCCCTAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAACGGAGAGCAAGACCGGACAAGACAATTACGAATTACATCCGCATCAGTTGAGCACACTTGA
Protein sequence

>Msa1363260

MATTTTTTKTTITNSLLKPQNQQQQQQPITKPKRRKCRETTISTSATQPEPEPQLPDSPSTYTVRYSPGRFSPIMDFTHSSSSPISNGHSTSGSGHDPFPSSFTKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMSQQRSALPYLVEIADCDDVEVYVETLRLMYCKDLRKKLMKEDVSKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEDKVASLLSELRLESVGAVEVLKRVSTEVANGYEEGNDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYSACDDCLQLLRHHFLRAADSDLQDVSQIARQADNLHWILDILIDRQIAEDFLKMWASESELSEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKEARCLLLKTWLVPFYDDFGWMRRASKGLDRHIIEDGLSNTILTLPLSWQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQDRTRQLRITSASVEHT*