Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526690 | XP_013468988.1 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.49e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526690 | sp|Q9SQZ9|PITH1_ARATH | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.70e-103 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526690 | I3SPG3 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 7.10e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267780 | Msa0526690 | 0.869742 | 2.465073e-66 | -8.615850e-47 |
| Msa0526690 | Msa1390300 | 0.988776 | 2.308457e-175 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526690 | MtrunA17_Chr1g0190801 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.37e-130 | 363 |
| Msa0526690 | MtrunA17_Chr2g0285181 | 32.500 | 160 | 94 | 8 | 17 | 169 | 20 | 172 | 8.90e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526690 | AT3G04780.1 | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.86e-104 | 295 |
| Msa0526690 | AT2G25950.1 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.45e-11 | 60.8 |
| Msa0526690 | AT2G25950.2 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.98e-11 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTTTGTGCGATATA+TGG | 0.220675 | 3_4:-80707724 | None:intergenic |
| GAAAAGAGCTTCACTGTCTT+GGG | 0.289539 | 3_4:-80709539 | None:intergenic |
| ATATTCAGCTTCATGAATAA+TGG | 0.295236 | 3_4:+80711824 | Msa0526690:three_prime_UTR |
| CCACCAAATTGTGGCGTGTA+TGG | 0.316923 | 3_4:+80712155 | Msa0526690:three_prime_UTR |
| AACCCATACACGCCACAATT+TGG | 0.328476 | 3_4:-80712158 | None:intergenic |
| ATAGTATTACCTTCATCTTC+AGG | 0.337204 | 3_4:-80708204 | None:intergenic |
| TCAAAATTTCCAAGGGTAGA+TGG | 0.343531 | 3_4:-80711790 | None:intergenic |
| ACAAGGAACACATGGGATTC+AGG | 0.346409 | 3_4:+80709564 | Msa0526690:CDS |
| TATCTTGAATGACTTAAGAT+TGG | 0.366253 | 3_4:+80712014 | Msa0526690:three_prime_UTR |
| GGAAAAGAGCTTCACTGTCT+TGG | 0.377000 | 3_4:-80709540 | None:intergenic |
| ATAGTAACCCTATTCTATTT+CGG | 0.379348 | 3_4:-80712119 | None:intergenic |
| CGAACCTGTTTAATAGCGTT+GGG | 0.387848 | 3_4:-80707975 | None:intergenic |
| GTTCAGAAGATTATGCTGAT+TGG | 0.398671 | 3_4:+80710064 | Msa0526690:CDS |
| ATCTCTTAGACTTCATAGAT+TGG | 0.400371 | 3_4:+80707910 | Msa0526690:CDS |
| GAATCCCATGTGTTCCTTGT+TGG | 0.401137 | 3_4:-80709561 | None:intergenic |
| TCGAGCGAGCGAGCAATGTC+TGG | 0.415846 | 3_4:+80707752 | Msa0526690:exon |
| ATATGCATCCGAAATAGAAT+AGG | 0.420531 | 3_4:+80712111 | Msa0526690:three_prime_UTR |
| CAGCTTGACAATATTTATTG+AGG | 0.448896 | 3_4:+80710012 | Msa0526690:intron |
| TCTCCCCAACGCTATTAAAC+AGG | 0.449659 | 3_4:+80707971 | Msa0526690:CDS |
| TATTCTCTTATAGGGAAAAC+CGG | 0.450332 | 3_4:+80709852 | Msa0526690:intron |
| CCGAACCTGTTTAATAGCGT+TGG | 0.450637 | 3_4:-80707976 | None:intergenic |
| TTGACATACTTTAAAAGTAC+CGG | 0.471646 | 3_4:-80709871 | None:intergenic |
| TATGCATCCGAAATAGAATA+GGG | 0.472594 | 3_4:+80712112 | Msa0526690:three_prime_UTR |
| AATTGTGGCGTGTATGGGTT+CGG | 0.473971 | 3_4:+80712161 | Msa0526690:three_prime_UTR |
| ATGTCAAATTTCAAAATGTC+CGG | 0.480329 | 3_4:+80709887 | Msa0526690:CDS |
| CACCAAATTGTGGCGTGTAT+GGG | 0.483217 | 3_4:+80712156 | Msa0526690:three_prime_UTR |
| ACCCTTGTGAACAGCGGTGG+TGG | 0.483236 | 3_4:-80707783 | None:intergenic |
| CTTTATTCAGTTGCTTTCAA+AGG | 0.501742 | 3_4:+80708180 | Msa0526690:CDS |
| GGTGTGACAATTTATGTGAT+AGG | 0.502172 | 3_4:+80711913 | Msa0526690:three_prime_UTR |
| ATTTCCAATCAAAATTTCCA+AGG | 0.510535 | 3_4:-80711798 | None:intergenic |
| TCTGCACATCCATCTACCCT+TGG | 0.510956 | 3_4:+80711781 | Msa0526690:three_prime_UTR |
| AGTTTAATAACTTGAGTGAA+AGG | 0.521408 | 3_4:-80708159 | None:intergenic |
| GAAGGGTTTGAAGAAGATTG+AGG | 0.521516 | 3_4:+80711723 | Msa0526690:CDS |
| CCATACACGCCACAATTTGG+TGG | 0.524359 | 3_4:-80712155 | None:intergenic |
| TTAGACTTCATAGATTGGAC+TGG | 0.525278 | 3_4:+80707915 | Msa0526690:CDS |
| TAGGGTTATAGAGAAGATGA+TGG | 0.528724 | 3_4:+80708090 | Msa0526690:intron |
| TGTTAAACAGTATATCTGCT+TGG | 0.533996 | 3_4:+80711891 | Msa0526690:three_prime_UTR |
| AGCCACCACCGCTGTTCACA+AGG | 0.536518 | 3_4:+80707781 | Msa0526690:CDS |
| AGTTGAAACAACGGACATGA+AGG | 0.536929 | 3_4:+80711705 | Msa0526690:CDS |
| GTTAAACAGTATATCTGCTT+GGG | 0.538527 | 3_4:+80711892 | Msa0526690:three_prime_UTR |
| AAAATTAATGTATCACTTGG+TGG | 0.546577 | 3_4:-80709703 | None:intergenic |
| GACAAAATTAATGTATCACT+TGG | 0.564267 | 3_4:-80709706 | None:intergenic |
| TTGGAGCTAGACTACATTGA+CGG | 0.576277 | 3_4:+80712033 | Msa0526690:three_prime_UTR |
| TTCAAAGGTCCTGAAGATGA+AGG | 0.580336 | 3_4:+80708195 | Msa0526690:CDS |
| TATGGAAAGAGAGAGAAGAG+AGG | 0.580454 | 3_4:-80707706 | None:intergenic |
| TTTGTCTCCTGAAAACCTCA+AGG | 0.583750 | 3_4:+80709723 | Msa0526690:CDS |
| TTTCCAATCAAAATTTCCAA+GGG | 0.596549 | 3_4:-80711797 | None:intergenic |
| AAAAGAGCTTCACTGTCTTG+GGG | 0.597831 | 3_4:-80709538 | None:intergenic |
| GTTGAAACAACGGACATGAA+GGG | 0.604552 | 3_4:+80711706 | Msa0526690:CDS |
| TACTTGACCCTTGTGAACAG+CGG | 0.613002 | 3_4:-80707789 | None:intergenic |
| TCAAATTTCAAAATGTCCGG+AGG | 0.653931 | 3_4:+80709890 | Msa0526690:CDS |
| TTGACCCTTGTGAACAGCGG+TGG | 0.656088 | 3_4:-80707786 | None:intergenic |
| GATGTAATGTTCAAGCTGCA+TGG | 0.657411 | 3_4:+80711935 | Msa0526690:three_prime_UTR |
| GAACCTGTTTAATAGCGTTG+GGG | 0.669005 | 3_4:-80707974 | None:intergenic |
| GCCACCACCGCTGTTCACAA+GGG | 0.677895 | 3_4:+80707782 | Msa0526690:CDS |
| TTGATGCAGAGTTGAAACAA+CGG | 0.696444 | 3_4:+80711696 | Msa0526690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTATTAATTTAATC+AGG | + | chr3_4:80707884-80707903 | Msa0526690:intron | 10.0% |
| !!! | TTTTTTTACTAATGAAAATT+AGG | + | chr3_4:80708071-80708090 | Msa0526690:intron | 10.0% |
| !!! | TTTTTTACTAATGAAAATTA+GGG | + | chr3_4:80708072-80708091 | Msa0526690:intron | 10.0% |
| !!! | ATTTTTATTTTTTGAAAACT+CGG | + | chr3_4:80708553-80708572 | Msa0526690:intron | 10.0% |
| !! | AAAATTAATAAATAATGTCT+TGG | - | chr3_4:80709071-80709090 | None:intergenic | 10.0% |
| !! | TAGAAAATTTAAATAAATTG+AGG | - | chr3_4:80709210-80709229 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTCTATCATATT+TGG | + | chr3_4:80709802-80709821 | Msa0526690:intron | 10.0% |
| !!! | TATTTAATTTATTCTCTTAT+AGG | + | chr3_4:80709843-80709862 | Msa0526690:intron | 10.0% |
| !!! | ATTTAATTTATTCTCTTATA+GGG | + | chr3_4:80709844-80709863 | Msa0526690:intron | 10.0% |
| !! | AGTAACACAATAAAAAAAAA+GGG | - | chr3_4:80708022-80708041 | None:intergenic | 15.0% |
| !! | AAGTAACACAATAAAAAAAA+AGG | - | chr3_4:80708023-80708042 | None:intergenic | 15.0% |
| !! | TTATATGATATGAATGAATA+AGG | - | chr3_4:80708235-80708254 | None:intergenic | 15.0% |
| !! | AAAACCATTAAAATAAATTG+AGG | - | chr3_4:80709103-80709122 | None:intergenic | 15.0% |
| !!! | AAGTCAAATATTGTTTTATT+TGG | - | chr3_4:80710274-80710293 | None:intergenic | 15.0% |
| !! | TAACAATAATGTTATACATT+TGG | + | chr3_4:80710298-80710317 | Msa0526690:intron | 15.0% |
| !! | AACAATAATGTTATACATTT+GGG | + | chr3_4:80710299-80710318 | Msa0526690:intron | 15.0% |
| !!! | AAATTTATGAATGAATGTTT+TGG | + | chr3_4:80710345-80710364 | Msa0526690:intron | 15.0% |
| !!! | TATTTTCTTTTTCAAATGTT+TGG | + | chr3_4:80711963-80711982 | Msa0526690:three_prime_UTR | 15.0% |
| !!! | ATTTTCTTTTTCAAATGTTT+GGG | + | chr3_4:80711964-80711983 | Msa0526690:three_prime_UTR | 15.0% |
| !!! | CTTTAAAAGAAAAACTAATA+TGG | - | chr3_4:80712061-80712080 | None:intergenic | 15.0% |
| !!! | GATTATGATGATGAATAATA+GGG | - | chr3_4:80707824-80707843 | None:intergenic | 20.0% |
| !! | AAAGAAAAAGATTAGTAACT+AGG | - | chr3_4:80707871-80707890 | None:intergenic | 20.0% |
| !!! | CAATAAAAAAAAAGGGTTTT+TGG | - | chr3_4:80708015-80708034 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCAAACATTAG+CGG | + | chr3_4:80708446-80708465 | Msa0526690:intron | 20.0% |
| !!! | ATCGACTATTTATATTTTCA+TGG | + | chr3_4:80708955-80708974 | Msa0526690:intron | 20.0% |
| !!! | GATACCTCAATTTATTTTAA+TGG | + | chr3_4:80709096-80709115 | Msa0526690:intron | 20.0% |
| !!! | TTTAAGACTATATACCATTA+TGG | - | chr3_4:80709303-80709322 | None:intergenic | 20.0% |
| !! | GCTATTAAAACAAACAAATT+TGG | - | chr3_4:80709606-80709625 | None:intergenic | 20.0% |
| !! | CTTTATAAAAGTAGGAAATA+AGG | - | chr3_4:80709927-80709946 | None:intergenic | 20.0% |
| !! | ACAATAATGTTATACATTTG+GGG | + | chr3_4:80710300-80710319 | Msa0526690:intron | 20.0% |
| !! | GAGGAATAAATCATATAAAA+TGG | + | chr3_4:80710836-80710855 | Msa0526690:intron | 20.0% |
| !! | AACCTAATTTGATTGATATA+AGG | - | chr3_4:80711446-80711465 | None:intergenic | 20.0% |
| !! | TTGGGTAATATGTAAAAAAT+TGG | + | chr3_4:80711982-80712001 | Msa0526690:three_prime_UTR | 20.0% |
| !! | TGGGTAATATGTAAAAAATT+GGG | + | chr3_4:80711983-80712002 | Msa0526690:three_prime_UTR | 20.0% |
| !!! | ATTTTTTAGAAAAGCAAAGT+AGG | - | chr3_4:80712093-80712112 | None:intergenic | 20.0% |
| !! | CGATTATGATGATGAATAAT+AGG | - | chr3_4:80707825-80707844 | None:intergenic | 25.0% |
| ! | AGTTTAATAACTTGAGTGAA+AGG | - | chr3_4:80708162-80708181 | None:intergenic | 25.0% |
| ! | TTACATGTACAATCATATTG+GGG | - | chr3_4:80708311-80708330 | None:intergenic | 25.0% |
| ! | CTTACATGTACAATCATATT+GGG | - | chr3_4:80708312-80708331 | None:intergenic | 25.0% |
| ! | TCTTACATGTACAATCATAT+TGG | - | chr3_4:80708313-80708332 | None:intergenic | 25.0% |
| ! | TATTGAATGTAATCACATGT+TGG | - | chr3_4:80708418-80708437 | None:intergenic | 25.0% |
| ! | ACATGTATAGATACCAAAAT+GGG | - | chr3_4:80708523-80708542 | None:intergenic | 25.0% |
| ! | TACATGTATAGATACCAAAA+TGG | - | chr3_4:80708524-80708543 | None:intergenic | 25.0% |
| !! | TAGCTAATCATTTTCTTAAG+TGG | + | chr3_4:80709349-80709368 | Msa0526690:intron | 25.0% |
| ! | CTCATTATAAAATTCTTCCA+AGG | - | chr3_4:80709384-80709403 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTATAATGAGA+TGG | + | chr3_4:80709385-80709404 | Msa0526690:intron | 25.0% |
| !! | AGAATTTTATAATGAGATGG+AGG | + | chr3_4:80709388-80709407 | Msa0526690:intron | 25.0% |
| ! | TTTGTTGACATGATTGTAAT+CGG | + | chr3_4:80709495-80709514 | Msa0526690:intron | 25.0% |
| ! | AAAATTAATGTATCACTTGG+TGG | - | chr3_4:80709706-80709725 | None:intergenic | 25.0% |
| ! | GACAAAATTAATGTATCACT+TGG | - | chr3_4:80709709-80709728 | None:intergenic | 25.0% |
| !! | TTGACATACTTTAAAAGTAC+CGG | - | chr3_4:80709874-80709893 | None:intergenic | 25.0% |
| ! | ATGTCAAATTTCAAAATGTC+CGG | + | chr3_4:80709887-80709906 | Msa0526690:CDS | 25.0% |
| ! | AAATAATACCCCAAATAAAG+GGG | - | chr3_4:80710233-80710252 | None:intergenic | 25.0% |
| ! | CAAATAATACCCCAAATAAA+GGG | - | chr3_4:80710234-80710253 | None:intergenic | 25.0% |
| ! | ACAAATAATACCCCAAATAA+AGG | - | chr3_4:80710235-80710254 | None:intergenic | 25.0% |
| ! | AGAAGAATAGATCATACAAA+TGG | + | chr3_4:80710472-80710491 | Msa0526690:intron | 25.0% |
| ! | AATGTATTGGAGAGAAAATA+TGG | + | chr3_4:80710728-80710747 | Msa0526690:intron | 25.0% |
| ! | ATGTATTGGAGAGAAAATAT+GGG | + | chr3_4:80710729-80710748 | Msa0526690:intron | 25.0% |
| ! | TTATGATGTCAACTAATTTG+TGG | + | chr3_4:80710964-80710983 | Msa0526690:intron | 25.0% |
| ! | TGCAAAACAAAAAGATTATG+TGG | - | chr3_4:80711087-80711106 | None:intergenic | 25.0% |
| ! | ATTAAGTACCAATTCCAATA+TGG | - | chr3_4:80711140-80711159 | None:intergenic | 25.0% |
| !!! | GGTCAGACATTTTAAAATTT+CGG | - | chr3_4:80711291-80711310 | None:intergenic | 25.0% |
| !!! | ATTTTAAAATGTCTGACCAA+TGG | + | chr3_4:80711293-80711312 | Msa0526690:intron | 25.0% |
| ! | TGCCTTATATCAATCAAATT+AGG | + | chr3_4:80711441-80711460 | Msa0526690:intron | 25.0% |
| !!! | TCGAACATTTTGAAAATTGT+AGG | + | chr3_4:80711608-80711627 | Msa0526690:intron | 25.0% |
| ! | TTTCCAATCAAAATTTCCAA+GGG | - | chr3_4:80711800-80711819 | None:intergenic | 25.0% |
| ! | ATTTCCAATCAAAATTTCCA+AGG | - | chr3_4:80711801-80711820 | None:intergenic | 25.0% |
| ! | ATATTCAGCTTCATGAATAA+TGG | + | chr3_4:80711824-80711843 | Msa0526690:three_prime_UTR | 25.0% |
| ! | GGGTAATATGTAAAAAATTG+GGG | + | chr3_4:80711984-80712003 | Msa0526690:three_prime_UTR | 25.0% |
| ! | TATCTTGAATGACTTAAGAT+TGG | + | chr3_4:80712014-80712033 | Msa0526690:three_prime_UTR | 25.0% |
| ! | ATAGTAACCCTATTCTATTT+CGG | - | chr3_4:80712122-80712141 | None:intergenic | 25.0% |
| ATCTCTTAGACTTCATAGAT+TGG | + | chr3_4:80707910-80707929 | Msa0526690:CDS | 30.0% | |
| ! | CTTTATTCAGTTGCTTTCAA+AGG | + | chr3_4:80708180-80708199 | Msa0526690:CDS | 30.0% |
| ATAGTATTACCTTCATCTTC+AGG | - | chr3_4:80708207-80708226 | None:intergenic | 30.0% | |
| TACATGTACAATCATATTGG+GGG | - | chr3_4:80708310-80708329 | None:intergenic | 30.0% | |
| ATGTATAGATACCAAAATGG+GGG | - | chr3_4:80708521-80708540 | None:intergenic | 30.0% | |
| CATGTATAGATACCAAAATG+GGG | - | chr3_4:80708522-80708541 | None:intergenic | 30.0% | |
| TCTTAAGACTGACTAATTCA+AGG | + | chr3_4:80708583-80708602 | Msa0526690:intron | 30.0% | |
| CTTAAGACTGACTAATTCAA+GGG | + | chr3_4:80708584-80708603 | Msa0526690:intron | 30.0% | |
| TTAAGACTGACTAATTCAAG+GGG | + | chr3_4:80708585-80708604 | Msa0526690:intron | 30.0% | |
| TGCTAACAAGATGTAAAGTT+TGG | - | chr3_4:80708796-80708815 | None:intergenic | 30.0% | |
| AGTTAGTTCCTGTATTTGTT+AGG | + | chr3_4:80708890-80708909 | Msa0526690:intron | 30.0% | |
| GAGTTTAACCTAACAAATAC+AGG | - | chr3_4:80708901-80708920 | None:intergenic | 30.0% | |
| TATAGTAACATGTTACGCTT+TGG | - | chr3_4:80708932-80708951 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr3_4:80709116-80709135 | Msa0526690:intron | 30.0% |
| AACATCGCATTAATTTAGAG+TGG | - | chr3_4:80709272-80709291 | None:intergenic | 30.0% | |
| GATGTTCTATTCTTCCATAA+TGG | + | chr3_4:80709286-80709305 | Msa0526690:intron | 30.0% | |
| TGGTGAAGATTGTATTTGTA+GGG | - | chr3_4:80709443-80709462 | None:intergenic | 30.0% | |
| TTGGTGAAGATTGTATTTGT+AGG | - | chr3_4:80709444-80709463 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAGTAGCAAAT+TGG | - | chr3_4:80709463-80709482 | None:intergenic | 30.0% |
| !! | TTGAGCATATTAATGGACTT+GGG | - | chr3_4:80709770-80709789 | None:intergenic | 30.0% |
| !! | ATTGAGCATATTAATGGACT+TGG | - | chr3_4:80709771-80709790 | None:intergenic | 30.0% |
| TATTCTCTTATAGGGAAAAC+CGG | + | chr3_4:80709852-80709871 | Msa0526690:intron | 30.0% | |
| TAAGGAAAATAACATACCTC+CGG | - | chr3_4:80709909-80709928 | None:intergenic | 30.0% | |
| AATTGGATGAGAAAAATGGA+AGG | - | chr3_4:80709952-80709971 | None:intergenic | 30.0% | |
| !! | TTCCATTTTTCTCATCCAAT+TGG | + | chr3_4:80709951-80709970 | Msa0526690:intron | 30.0% |
| CTCAATAAATATTGTCAAGC+TGG | - | chr3_4:80710014-80710033 | None:intergenic | 30.0% | |
| CAGCTTGACAATATTTATTG+AGG | + | chr3_4:80710012-80710031 | Msa0526690:intron | 30.0% | |
| ATAATGTTATACATTTGGGG+TGG | + | chr3_4:80710303-80710322 | Msa0526690:intron | 30.0% | |
| !!! | AATGTTTTGGAGAGAAAGTA+GGG | + | chr3_4:80710358-80710377 | Msa0526690:intron | 30.0% |
| TGCTAAAATTCCATCATATG+TGG | + | chr3_4:80710403-80710422 | Msa0526690:intron | 30.0% | |
| AAATTCCATCATATGTGGTT+TGG | + | chr3_4:80710408-80710427 | Msa0526690:intron | 30.0% | |
| AATTCCATCATATGTGGTTT+GGG | + | chr3_4:80710409-80710428 | Msa0526690:intron | 30.0% | |
| GCCTAATACTTAAAGGTAAA+AGG | + | chr3_4:80710506-80710525 | Msa0526690:intron | 30.0% | |
| ! | GCCTTTTACCTTTAAGTATT+AGG | - | chr3_4:80710510-80710529 | None:intergenic | 30.0% |
| CAAATCTAAACCCTTTCTAA+TGG | - | chr3_4:80710557-80710576 | None:intergenic | 30.0% | |
| AGAAAGGGTTTAGATTTGAA+TGG | + | chr3_4:80710559-80710578 | Msa0526690:intron | 30.0% | |
| AGGTTTGTGAATGAATGTAT+TGG | + | chr3_4:80710715-80710734 | Msa0526690:intron | 30.0% | |
| TGCTAAAATTTCAACTTGTG+TGG | + | chr3_4:80710773-80710792 | Msa0526690:intron | 30.0% | |
| AAATTTCAACTTGTGTGGTT+TGG | + | chr3_4:80710778-80710797 | Msa0526690:intron | 30.0% | |
| AATTTCAACTTGTGTGGTTT+GGG | + | chr3_4:80710779-80710798 | Msa0526690:intron | 30.0% | |
| ! | CCTTTTACCTTTTACGTATT+AGG | - | chr3_4:80710865-80710884 | None:intergenic | 30.0% |
| CCTAATACGTAAAAGGTAAA+AGG | + | chr3_4:80710862-80710881 | Msa0526690:intron | 30.0% | |
| TATAAGTCAGACCATTAAGA+AGG | + | chr3_4:80710899-80710918 | Msa0526690:intron | 30.0% | |
| ATAAGTCAGACCATTAAGAA+GGG | + | chr3_4:80710900-80710919 | Msa0526690:intron | 30.0% | |
| CAAATCTAAACCCTTCTTAA+TGG | - | chr3_4:80710913-80710932 | None:intergenic | 30.0% | |
| TTGCAATGTGATCTACAAAT+TGG | + | chr3_4:80711102-80711121 | Msa0526690:intron | 30.0% | |
| TACTTAATTGTCTTGCTTGT+GGG | + | chr3_4:80711152-80711171 | Msa0526690:intron | 30.0% | |
| TAATTCAAAGAACGAAAGTG+TGG | - | chr3_4:80711178-80711197 | None:intergenic | 30.0% | |
| TCATCAACATTCAATCTCAA+AGG | - | chr3_4:80711336-80711355 | None:intergenic | 30.0% | |
| !!! | CAACACATATTTTGATGACA+TGG | + | chr3_4:80711483-80711502 | Msa0526690:intron | 30.0% |
| !!! | TTGACTCATACTTTTTTACG+AGG | - | chr3_4:80711757-80711776 | None:intergenic | 30.0% |
| TGTTAAACAGTATATCTGCT+TGG | + | chr3_4:80711891-80711910 | Msa0526690:three_prime_UTR | 30.0% | |
| GTTAAACAGTATATCTGCTT+GGG | + | chr3_4:80711892-80711911 | Msa0526690:three_prime_UTR | 30.0% | |
| ATATGCATCCGAAATAGAAT+AGG | + | chr3_4:80712111-80712130 | Msa0526690:three_prime_UTR | 30.0% | |
| TATGCATCCGAAATAGAATA+GGG | + | chr3_4:80712112-80712131 | Msa0526690:three_prime_UTR | 30.0% | |
| ! | CGATTTGTTTGTGCGATATA+TGG | - | chr3_4:80707727-80707746 | None:intergenic | 35.0% |
| TTAGACTTCATAGATTGGAC+TGG | + | chr3_4:80707915-80707934 | Msa0526690:CDS | 35.0% | |
| TAGGGTTATAGAGAAGATGA+TGG | + | chr3_4:80708090-80708109 | Msa0526690:intron | 35.0% | |
| TGTGGGAATCAGGAAAAAAT+AGG | - | chr3_4:80708283-80708302 | None:intergenic | 35.0% | |
| ACATGTACAATCATATTGGG+GGG | - | chr3_4:80708309-80708328 | None:intergenic | 35.0% | |
| TGTATAGATACCAAAATGGG+GGG | - | chr3_4:80708520-80708539 | None:intergenic | 35.0% | |
| ! | TAAGCCTTATCCAACTAAGT+GGG | - | chr3_4:80709166-80709185 | None:intergenic | 35.0% |
| ! | TTTTCCAACAAGGAACACAT+GGG | + | chr3_4:80709557-80709576 | Msa0526690:CDS | 35.0% |
| AGCGACATTGAGCATATTAA+TGG | - | chr3_4:80709777-80709796 | None:intergenic | 35.0% | |
| TCAAATTTCAAAATGTCCGG+AGG | + | chr3_4:80709890-80709909 | Msa0526690:CDS | 35.0% | |
| !! | GGAAGGCACTTTATAAAAGT+AGG | - | chr3_4:80709935-80709954 | None:intergenic | 35.0% |
| CACCAATTGGATGAGAAAAA+TGG | - | chr3_4:80709956-80709975 | None:intergenic | 35.0% | |
| ! | CATTTTTCTCATCCAATTGG+TGG | + | chr3_4:80709954-80709973 | Msa0526690:intron | 35.0% |
| GTTCAGAAGATTATGCTGAT+TGG | + | chr3_4:80710064-80710083 | Msa0526690:CDS | 35.0% | |
| TAGGTATTTCTTCACACCAA+AGG | - | chr3_4:80710158-80710177 | None:intergenic | 35.0% | |
| CAAGTGTCAAATGGTTCAAT+AGG | - | chr3_4:80710177-80710196 | None:intergenic | 35.0% | |
| GGTAAAATGCAAGTGTCAAA+TGG | - | chr3_4:80710186-80710205 | None:intergenic | 35.0% | |
| !!! | GAATGTTTTGGAGAGAAAGT+AGG | + | chr3_4:80710357-80710376 | Msa0526690:intron | 35.0% |
| !!! | ATGTTTTGGAGAGAAAGTAG+GGG | + | chr3_4:80710359-80710378 | Msa0526690:intron | 35.0% |
| CTTTAAGTATTAGGCAACCT+AGG | - | chr3_4:80710501-80710520 | None:intergenic | 35.0% | |
| CTAGGTTGCCTAATACTTAA+AGG | + | chr3_4:80710499-80710518 | Msa0526690:intron | 35.0% | |
| TACAAGTCAGACCATTAGAA+AGG | + | chr3_4:80710543-80710562 | Msa0526690:intron | 35.0% | |
| ACAAGTCAGACCATTAGAAA+GGG | + | chr3_4:80710544-80710563 | Msa0526690:intron | 35.0% | |
| GTGGTAAACAACAACAATGA+AGG | - | chr3_4:80710660-80710679 | None:intergenic | 35.0% | |
| AGAGGAAACTGACAATTAAG+TGG | - | chr3_4:80710679-80710698 | None:intergenic | 35.0% | |
| ! | CTTATTGTTTCTTCTGCTAG+AGG | - | chr3_4:80710697-80710716 | None:intergenic | 35.0% |
| CTCTAGCAGAAGAAACAATA+AGG | + | chr3_4:80710695-80710714 | Msa0526690:intron | 35.0% | |
| ATGGTAGCCTAATACGTAAA+AGG | + | chr3_4:80710855-80710874 | Msa0526690:intron | 35.0% | |
| AAGAAGGGTTTAGATTTGAG+TGG | + | chr3_4:80710915-80710934 | Msa0526690:intron | 35.0% | |
| ! | TGATGTCAACTAATTTGTGG+AGG | + | chr3_4:80710967-80710986 | Msa0526690:intron | 35.0% |
| ! | GAATAAAGGTTTTCCCTACT+AGG | - | chr3_4:80711001-80711020 | None:intergenic | 35.0% |
| GTGGTAAGCAACAAGAATAA+AGG | - | chr3_4:80711015-80711034 | None:intergenic | 35.0% | |
| TAGCAGAAGAAACGATAAGA+CGG | + | chr3_4:80711053-80711072 | Msa0526690:intron | 35.0% | |
| TCGTATTGCCATATTGGAAT+TGG | + | chr3_4:80711129-80711148 | Msa0526690:intron | 35.0% | |
| GTACTTAATTGTCTTGCTTG+TGG | + | chr3_4:80711151-80711170 | Msa0526690:intron | 35.0% | |
| GAGACCAAATCTGTGAATAT+GGG | - | chr3_4:80711269-80711288 | None:intergenic | 35.0% | |
| !! | AAAAGCATTTCCAAATGCAC+AGG | + | chr3_4:80711573-80711592 | Msa0526690:intron | 35.0% |
| TTGATGCAGAGTTGAAACAA+CGG | + | chr3_4:80711696-80711715 | Msa0526690:intron | 35.0% | |
| TCAAAATTTCCAAGGGTAGA+TGG | - | chr3_4:80711793-80711812 | None:intergenic | 35.0% | |
| !! | CTACCCTTGGAAATTTTGAT+TGG | + | chr3_4:80711794-80711813 | Msa0526690:three_prime_UTR | 35.0% |
| GGTGTGACAATTTATGTGAT+AGG | + | chr3_4:80711913-80711932 | Msa0526690:three_prime_UTR | 35.0% | |
| ! | GATTTTCTTCCACCAAATTG+TGG | + | chr3_4:80712146-80712165 | Msa0526690:three_prime_UTR | 35.0% |
| TATGGAAAGAGAGAGAAGAG+AGG | - | chr3_4:80707709-80707728 | None:intergenic | 40.0% | |
| GAACCTGTTTAATAGCGTTG+GGG | - | chr3_4:80707977-80707996 | None:intergenic | 40.0% | |
| CGAACCTGTTTAATAGCGTT+GGG | - | chr3_4:80707978-80707997 | None:intergenic | 40.0% | |
| CCAACGCTATTAAACAGGTT+CGG | + | chr3_4:80707976-80707995 | Msa0526690:intron | 40.0% | |
| TTCAAAGGTCCTGAAGATGA+AGG | + | chr3_4:80708195-80708214 | Msa0526690:CDS | 40.0% | |
| ACTCCGACACATTTGATTGA+AGG | + | chr3_4:80708351-80708370 | Msa0526690:intron | 40.0% | |
| ACGCCTTCAATCAAATGTGT+CGG | - | chr3_4:80708357-80708376 | None:intergenic | 40.0% | |
| ATGTAATCACATGTTGGTGC+TGG | - | chr3_4:80708412-80708431 | None:intergenic | 40.0% | |
| !! | TGCTTTGCTCTGGCTTTAAA+CGG | - | chr3_4:80708639-80708658 | None:intergenic | 40.0% |
| ! | AAGCCTTATCCAACTAAGTG+GGG | - | chr3_4:80709165-80709184 | None:intergenic | 40.0% |
| ! | CTAAGCCTTATCCAACTAAG+TGG | - | chr3_4:80709167-80709186 | None:intergenic | 40.0% |
| GTAGGTGTAGTGAAGTAGTT+AGG | - | chr3_4:80709237-80709256 | None:intergenic | 40.0% | |
| GAGTGGTTAAAAGTAGCAGT+AGG | - | chr3_4:80709255-80709274 | None:intergenic | 40.0% | |
| TTAAGTGGTGTTCATCACCT+TGG | + | chr3_4:80709364-80709383 | Msa0526690:intron | 40.0% | |
| !! | TGTATTTGTAGGGTGCTGTA+AGG | - | chr3_4:80709433-80709452 | None:intergenic | 40.0% |
| !!! | CGGAGTCAATGTTGTTTTCT+AGG | + | chr3_4:80709515-80709534 | Msa0526690:intron | 40.0% |
| AAAAGAGCTTCACTGTCTTG+GGG | - | chr3_4:80709541-80709560 | None:intergenic | 40.0% | |
| GAAAAGAGCTTCACTGTCTT+GGG | - | chr3_4:80709542-80709561 | None:intergenic | 40.0% | |
| ! | AGTGAAGCTCTTTTCCAACA+AGG | + | chr3_4:80709547-80709566 | Msa0526690:CDS | 40.0% |
| ! | CTTTTCCAACAAGGAACACA+TGG | + | chr3_4:80709556-80709575 | Msa0526690:CDS | 40.0% |
| GATTCAGGTATAGCTTGGTT+TGG | + | chr3_4:80709579-80709598 | Msa0526690:intron | 40.0% | |
| CTTGTGCCCTGTGATTAAAT+CGG | + | chr3_4:80709627-80709646 | Msa0526690:intron | 40.0% | |
| ! | CAGCAACCGATTTAATCACA+GGG | - | chr3_4:80709636-80709655 | None:intergenic | 40.0% |
| ! | TCAGCAACCGATTTAATCAC+AGG | - | chr3_4:80709637-80709656 | None:intergenic | 40.0% |
| TTTGTCTCCTGAAAACCTCA+AGG | + | chr3_4:80709723-80709742 | Msa0526690:CDS | 40.0% | |
| TGGACTTGGGAGAAAAGTTA+TGG | - | chr3_4:80709757-80709776 | None:intergenic | 40.0% | |
| ! | TTTTCTCATCCAATTGGTGG+TGG | + | chr3_4:80709957-80709976 | Msa0526690:intron | 40.0% |
| ! | TTTCTCATCCAATTGGTGGT+GGG | + | chr3_4:80709958-80709977 | Msa0526690:intron | 40.0% |
| ! | CTACAGCTTTGTGTTTCCTT+TGG | + | chr3_4:80710139-80710158 | Msa0526690:intron | 40.0% |
| AAGTCCCAAACCACATATGA+TGG | - | chr3_4:80710416-80710435 | None:intergenic | 40.0% | |
| ! | TCATATGTGGTTTGGGACTT+TGG | + | chr3_4:80710416-80710435 | Msa0526690:intron | 40.0% |
| ! | GTTTGGGACTTTGGTATATG+TGG | + | chr3_4:80710425-80710444 | Msa0526690:intron | 40.0% |
| TTCTTACCGAGACTTGTCTA+TGG | - | chr3_4:80710456-80710475 | None:intergenic | 40.0% | |
| GATCATACAAATGGTAGCCT+AGG | + | chr3_4:80710481-80710500 | Msa0526690:intron | 40.0% | |
| TTATGATGTCGAGTAAGCTG+TGG | + | chr3_4:80710609-80710628 | Msa0526690:intron | 40.0% | |
| ! | AAGGTTTTCCCTACTAGGTA+AGG | - | chr3_4:80710641-80710660 | None:intergenic | 40.0% |
| ! | CAATGAAGGTTTTCCCTACT+AGG | - | chr3_4:80710646-80710665 | None:intergenic | 40.0% |
| AGAGGAAACTAACAACTACG+TGG | - | chr3_4:80711034-80711053 | None:intergenic | 40.0% | |
| CTTATCGTTTCTTCTGCTAG+AGG | - | chr3_4:80711052-80711071 | None:intergenic | 40.0% | |
| GTCTCCCATATTCACAGATT+TGG | + | chr3_4:80711262-80711281 | Msa0526690:intron | 40.0% | |
| GGAGACCAAATCTGTGAATA+TGG | - | chr3_4:80711270-80711289 | None:intergenic | 40.0% | |
| ! | TTCAATCTCAAAGGCGTAAG+TGG | - | chr3_4:80711327-80711346 | None:intergenic | 40.0% |
| AGCATCTCACATTCTCACTT+GGG | - | chr3_4:80711363-80711382 | None:intergenic | 40.0% | |
| AGTTGAAACAACGGACATGA+AGG | + | chr3_4:80711705-80711724 | Msa0526690:CDS | 40.0% | |
| GTTGAAACAACGGACATGAA+GGG | + | chr3_4:80711706-80711725 | Msa0526690:CDS | 40.0% | |
| GAAGGGTTTGAAGAAGATTG+AGG | + | chr3_4:80711723-80711742 | Msa0526690:CDS | 40.0% | |
| GATGTAATGTTCAAGCTGCA+TGG | + | chr3_4:80711935-80711954 | Msa0526690:three_prime_UTR | 40.0% | |
| TTGGAGCTAGACTACATTGA+CGG | + | chr3_4:80712033-80712052 | Msa0526690:three_prime_UTR | 40.0% | |
| TACTTGACCCTTGTGAACAG+CGG | - | chr3_4:80707792-80707811 | None:intergenic | 45.0% | |
| TCTCCCCAACGCTATTAAAC+AGG | + | chr3_4:80707971-80707990 | Msa0526690:CDS | 45.0% | |
| CCGAACCTGTTTAATAGCGT+TGG | - | chr3_4:80707979-80707998 | None:intergenic | 45.0% | |
| ATCATATTGGGGGGAGTTGT+GGG | - | chr3_4:80708300-80708319 | None:intergenic | 45.0% | |
| AATCATATTGGGGGGAGTTG+TGG | - | chr3_4:80708301-80708320 | None:intergenic | 45.0% | |
| ! | CGGAGTGTTAAGTGTACATG+TGG | - | chr3_4:80708337-80708356 | None:intergenic | 45.0% |
| CATGTGTCAAACACCTGAAC+TGG | - | chr3_4:80708382-80708401 | None:intergenic | 45.0% | |
| !! | GCTTTGCTCTGGCTTTAAAC+GGG | - | chr3_4:80708638-80708657 | None:intergenic | 45.0% |
| !! | AGCCAGAGCAAAGCATTGTA+TGG | + | chr3_4:80708644-80708663 | Msa0526690:intron | 45.0% |
| GTCCATACAATGCTTTGCTC+TGG | - | chr3_4:80708649-80708668 | None:intergenic | 45.0% | |
| TTATCCCCGGTTGCCAATTT+CGG | - | chr3_4:80708679-80708698 | None:intergenic | 45.0% | |
| GTCTCGTCTTTGATTATCCC+CGG | - | chr3_4:80708692-80708711 | None:intergenic | 45.0% | |
| ATCAAAGACGAGACCTTGAG+AGG | + | chr3_4:80708698-80708717 | Msa0526690:intron | 45.0% | |
| GATTTCAATGACTACCCTCC+AGG | - | chr3_4:80708761-80708780 | None:intergenic | 45.0% | |
| CTTATCCAACTAAGTGGGGT+TGG | - | chr3_4:80709161-80709180 | None:intergenic | 45.0% | |
| CAACCCCACTTAGTTGGATA+AGG | + | chr3_4:80709159-80709178 | Msa0526690:intron | 45.0% | |
| GGAAAAGAGCTTCACTGTCT+TGG | - | chr3_4:80709543-80709562 | None:intergenic | 45.0% | |
| GAATCCCATGTGTTCCTTGT+TGG | - | chr3_4:80709564-80709583 | None:intergenic | 45.0% | |
| ACAAGGAACACATGGGATTC+AGG | + | chr3_4:80709564-80709583 | Msa0526690:CDS | 45.0% | |
| CATGGGATTCAGGTATAGCT+TGG | + | chr3_4:80709574-80709593 | Msa0526690:intron | 45.0% | |
| ! | GCAACTACCTTGAGGTTTTC+AGG | - | chr3_4:80709733-80709752 | None:intergenic | 45.0% |
| GTTATGGAGCAACTACCTTG+AGG | - | chr3_4:80709741-80709760 | None:intergenic | 45.0% | |
| GTCACAGCAGAACTGATAGA+TGG | - | chr3_4:80710108-80710127 | None:intergenic | 45.0% | |
| ATACCCCAAATAAAGGGGTG+AGG | - | chr3_4:80710228-80710247 | None:intergenic | 45.0% | |
| ! | TATACATTTGGGGTGGTCGA+TGG | + | chr3_4:80710310-80710329 | Msa0526690:intron | 45.0% |
| ! | ATACATTTGGGGTGGTCGAT+GGG | + | chr3_4:80710311-80710330 | Msa0526690:intron | 45.0% |
| GAGAAGCCATAGACAAGTCT+CGG | + | chr3_4:80710447-80710466 | Msa0526690:intron | 45.0% | |
| CTCTTACTGAGACTTGCCTA+TGG | - | chr3_4:80710819-80710838 | None:intergenic | 45.0% | |
| CATAGGCAAGTCTCAGTAAG+AGG | + | chr3_4:80710817-80710836 | Msa0526690:intron | 45.0% | |
| TGGAGGTGACTTTACCTAGT+AGG | + | chr3_4:80710984-80711003 | Msa0526690:intron | 45.0% | |
| GGAGGTGACTTTACCTAGTA+GGG | + | chr3_4:80710985-80711004 | Msa0526690:intron | 45.0% | |
| GGTGTGTCGTATTGCCATAT+TGG | + | chr3_4:80711123-80711142 | Msa0526690:intron | 45.0% | |
| GTAAGTGGAGAAATGGCCAT+TGG | - | chr3_4:80711312-80711331 | None:intergenic | 45.0% | |
| ! | CAAAGGCGTAAGTGGAGAAA+TGG | - | chr3_4:80711319-80711338 | None:intergenic | 45.0% |
| CAGCATCTCACATTCTCACT+TGG | - | chr3_4:80711364-80711383 | None:intergenic | 45.0% | |
| GAGAATGTGAGATGCTGATG+TGG | + | chr3_4:80711367-80711386 | Msa0526690:intron | 45.0% | |
| AGCATTTCCAAATGCACAGG+TGG | + | chr3_4:80711576-80711595 | Msa0526690:intron | 45.0% | |
| GCATTTCCAAATGCACAGGT+GGG | + | chr3_4:80711577-80711596 | Msa0526690:intron | 45.0% | |
| CATTTCCAAATGCACAGGTG+GGG | + | chr3_4:80711578-80711597 | Msa0526690:intron | 45.0% | |
| CACCAAATTGTGGCGTGTAT+GGG | + | chr3_4:80712156-80712175 | Msa0526690:three_prime_UTR | 45.0% | |
| AACCCATACACGCCACAATT+TGG | - | chr3_4:80712161-80712180 | None:intergenic | 45.0% | |
| AATTGTGGCGTGTATGGGTT+CGG | + | chr3_4:80712161-80712180 | Msa0526690:three_prime_UTR | 45.0% | |
| ! | ATTGAAGGCGTGTCCAGTTC+AGG | + | chr3_4:80708366-80708385 | Msa0526690:intron | 50.0% |
| ! | GAATGCGAATCCCCCCATTT+TGG | + | chr3_4:80708507-80708526 | Msa0526690:intron | 50.0% |
| !! | ATGGACTAGCCCACCGAAAT+TGG | + | chr3_4:80708663-80708682 | Msa0526690:intron | 50.0% |
| !! | GAACCCATTTGGGTTGGCTT+GGG | - | chr3_4:80708739-80708758 | None:intergenic | 50.0% |
| ! | AACCCAAATGGGTTCCTGGA+GGG | + | chr3_4:80708744-80708763 | Msa0526690:intron | 50.0% |
| TACCCTCCAGGAACCCATTT+GGG | - | chr3_4:80708749-80708768 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTAGT+TGG | + | chr3_4:80709153-80709172 | Msa0526690:intron | 50.0% | |
| AAGTTGCTCCCACCACCAAT+TGG | - | chr3_4:80709969-80709988 | None:intergenic | 50.0% | |
| TGATGTCGAGTAAGCTGTGG+AGG | + | chr3_4:80710612-80710631 | Msa0526690:intron | 50.0% | |
| TGGAGGTGACCTTACCTAGT+AGG | + | chr3_4:80710629-80710648 | Msa0526690:intron | 50.0% | |
| GGAGGTGACCTTACCTAGTA+GGG | + | chr3_4:80710630-80710649 | Msa0526690:intron | 50.0% | |
| GGTGTATGTGCAGAAGCCAT+AGG | + | chr3_4:80710800-80710819 | Msa0526690:intron | 50.0% | |
| ! | TTTTGCCCCACCTGTGCATT+TGG | - | chr3_4:80711586-80711605 | None:intergenic | 50.0% |
| TCTGCACATCCATCTACCCT+TGG | + | chr3_4:80711781-80711800 | Msa0526690:three_prime_UTR | 50.0% | |
| CCATACACGCCACAATTTGG+TGG | - | chr3_4:80712158-80712177 | None:intergenic | 50.0% | |
| CCACCAAATTGTGGCGTGTA+TGG | + | chr3_4:80712155-80712174 | Msa0526690:three_prime_UTR | 50.0% | |
| TTGACCCTTGTGAACAGCGG+TGG | - | chr3_4:80707789-80707808 | None:intergenic | 55.0% | |
| CCAATCCCACCATCCACTTG+CGG | + | chr3_4:80708609-80708628 | Msa0526690:intron | 55.0% | |
| CAATCCCACCATCCACTTGC+GGG | + | chr3_4:80708610-80708629 | Msa0526690:intron | 55.0% | |
| AATCCCACCATCCACTTGCG+GGG | + | chr3_4:80708611-80708630 | Msa0526690:intron | 55.0% | |
| AGCCCACCGAAATTGGCAAC+CGG | + | chr3_4:80708670-80708689 | Msa0526690:intron | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr3_4:80708714-80708733 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr3_4:80708712-80708731 | Msa0526690:intron | 55.0% |
| !! | TTTGGGTTGGCTTGGGACCT+TGG | - | chr3_4:80708732-80708751 | None:intergenic | 55.0% |
| AGGTCCCAAGCCAACCCAAA+TGG | + | chr3_4:80708732-80708751 | Msa0526690:intron | 55.0% | |
| GGTCCCAAGCCAACCCAAAT+GGG | + | chr3_4:80708733-80708752 | Msa0526690:intron | 55.0% | |
| !! | GGAACCCATTTGGGTTGGCT+TGG | - | chr3_4:80708740-80708759 | None:intergenic | 55.0% |
| ! | AGCCAACCCAAATGGGTTCC+TGG | + | chr3_4:80708740-80708759 | Msa0526690:intron | 55.0% |
| CTCCAGGAACCCATTTGGGT+TGG | - | chr3_4:80708745-80708764 | None:intergenic | 55.0% | |
| ! | CAACCCAAATGGGTTCCTGG+AGG | + | chr3_4:80708743-80708762 | Msa0526690:intron | 55.0% |
| CTACCCTCCAGGAACCCATT+TGG | - | chr3_4:80708750-80708769 | None:intergenic | 55.0% | |
| ATAAAGGGGTGAGGCGGGAA+GGG | - | chr3_4:80710219-80710238 | None:intergenic | 55.0% | |
| AATAAAGGGGTGAGGCGGGA+AGG | - | chr3_4:80710220-80710239 | None:intergenic | 55.0% | |
| TCCCGCCTCACCCCTTTATT+TGG | + | chr3_4:80710220-80710239 | Msa0526690:intron | 55.0% | |
| CCCAAATAAAGGGGTGAGGC+GGG | - | chr3_4:80710224-80710243 | None:intergenic | 55.0% | |
| ! | CCCGCCTCACCCCTTTATTT+GGG | + | chr3_4:80710221-80710240 | Msa0526690:intron | 55.0% |
| CCCCAAATAAAGGGGTGAGG+CGG | - | chr3_4:80710225-80710244 | None:intergenic | 55.0% | |
| ! | CCGCCTCACCCCTTTATTTG+GGG | + | chr3_4:80710222-80710241 | Msa0526690:intron | 55.0% |
| TCGAGCGAGCGAGCAATGTC+TGG | + | chr3_4:80707752-80707771 | Msa0526690:exon | 60.0% | |
| AGCCACCACCGCTGTTCACA+AGG | + | chr3_4:80707781-80707800 | Msa0526690:CDS | 60.0% | |
| GCCACCACCGCTGTTCACAA+GGG | + | chr3_4:80707782-80707801 | Msa0526690:CDS | 60.0% | |
| ACCCTTGTGAACAGCGGTGG+TGG | - | chr3_4:80707786-80707805 | None:intergenic | 60.0% | |
| TGGGGGGAGTTGTGGGAATC+AGG | - | chr3_4:80708293-80708312 | None:intergenic | 60.0% | |
| !! | CCGCAAGTGGATGGTGGGAT+TGG | - | chr3_4:80708612-80708631 | None:intergenic | 60.0% |
| ATCCCACCATCCACTTGCGG+GGG | + | chr3_4:80708612-80708631 | Msa0526690:intron | 60.0% | |
| TTTAAACGGGCCCCCGCAAG+TGG | - | chr3_4:80708625-80708644 | None:intergenic | 60.0% | |
| GCCCACCGAAATTGGCAACC+GGG | + | chr3_4:80708671-80708690 | Msa0526690:intron | 60.0% | |
| CCCCGGTTGCCAATTTCGGT+GGG | - | chr3_4:80708675-80708694 | None:intergenic | 60.0% | |
| CCCACCGAAATTGGCAACCG+GGG | + | chr3_4:80708672-80708691 | Msa0526690:intron | 60.0% | |
| TCCCCGGTTGCCAATTTCGG+TGG | - | chr3_4:80708676-80708695 | None:intergenic | 60.0% | |
| GGCGGGAAGGGAGGGGAAAA+CGG | - | chr3_4:80710207-80710226 | None:intergenic | 65.0% | |
| GGCCCCCGCAAGTGGATGGT+GGG | - | chr3_4:80708617-80708636 | None:intergenic | 70.0% | |
| AACGGGCCCCCGCAAGTGGA+TGG | - | chr3_4:80708621-80708640 | None:intergenic | 70.0% | |
| AGGGGTGAGGCGGGAAGGGA+GGG | - | chr3_4:80710215-80710234 | None:intergenic | 70.0% | |
| AAGGGGTGAGGCGGGAAGGG+AGG | - | chr3_4:80710216-80710235 | None:intergenic | 70.0% | |
| GGGCCCCCGCAAGTGGATGG+TGG | - | chr3_4:80708618-80708637 | None:intergenic | 75.0% | |
| GGGGTGAGGCGGGAAGGGAG+GGG | - | chr3_4:80710214-80710233 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 80707677 | 80712208 | 80707677 | ID=Msa0526690;Name=Msa0526690 |
| chr3_4 | mRNA | 80707677 | 80712208 | 80707677 | ID=Msa0526690-mRNA-1;Parent=Msa0526690;Name=Msa0526690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=90|1|1|1|1|1|8|455|177 |
| chr3_4 | exon | 80707677 | 80707808 | 80707677 | ID=Msa0526690-mRNA-1:exon:24266;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80707906 | 80707992 | 80707906 | ID=Msa0526690-mRNA-1:exon:24267;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80708093 | 80708216 | 80708093 | ID=Msa0526690-mRNA-1:exon:24268;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80709537 | 80709585 | 80709537 | ID=Msa0526690-mRNA-1:exon:24269;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80709687 | 80709744 | 80709687 | ID=Msa0526690-mRNA-1:exon:24270;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80709865 | 80709911 | 80709865 | ID=Msa0526690-mRNA-1:exon:24271;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80710015 | 80710092 | 80710015 | ID=Msa0526690-mRNA-1:exon:24272;Parent=Msa0526690-mRNA-1 |
| chr3_4 | exon | 80711705 | 80712208 | 80711705 | ID=Msa0526690-mRNA-1:exon:24273;Parent=Msa0526690-mRNA-1 |
| chr3_4 | five_prime_UTR | 80707677 | 80707766 | 80707677 | ID=Msa0526690-mRNA-1:five_prime_utr;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80707767 | 80707808 | 80707767 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80707906 | 80707992 | 80707906 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80708093 | 80708216 | 80708093 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80709537 | 80709585 | 80709537 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80709687 | 80709744 | 80709687 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80709865 | 80709911 | 80709865 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80710015 | 80710092 | 80710015 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | CDS | 80711705 | 80711753 | 80711705 | ID=Msa0526690-mRNA-1:cds;Parent=Msa0526690-mRNA-1 |
| chr3_4 | three_prime_UTR | 80711754 | 80712208 | 80711754 | ID=Msa0526690-mRNA-1:three_prime_utr;Parent=Msa0526690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
