Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390300 | XP_013468988.1 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.49e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390300 | sp|Q9SQZ9|PITH1_ARATH | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.70e-103 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390300 | I3SPG3 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 7.10e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267780 | Msa1390300 | 0.878222 | 3.344350e-69 | -8.615850e-47 |
| Msa0526690 | Msa1390300 | 0.988776 | 2.308457e-175 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390300 | MtrunA17_Chr1g0190801 | 99.435 | 177 | 1 | 0 | 1 | 177 | 1 | 177 | 1.37e-130 | 363 |
| Msa1390300 | MtrunA17_Chr2g0285181 | 32.500 | 160 | 94 | 8 | 17 | 169 | 20 | 172 | 8.90e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390300 | AT3G04780.1 | 80.791 | 177 | 33 | 1 | 1 | 177 | 1 | 176 | 9.86e-104 | 295 |
| Msa1390300 | AT2G25950.1 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.45e-11 | 60.8 |
| Msa1390300 | AT2G25950.2 | 32.298 | 161 | 93 | 8 | 17 | 169 | 20 | 172 | 1.98e-11 | 60.5 |
Find 56 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTTTGTGCGATATA+TGG | 0.220675 | tig0021333:-62660 | None:intergenic |
| GAAAAGAGCTTCACTGTCTT+GGG | 0.289539 | tig0021333:-64466 | None:intergenic |
| ATATTCAGCTTCATGAATAA+TGG | 0.295236 | tig0021333:+66752 | Msa1390300:three_prime_UTR |
| CCACCAAATTGTGGCGTGTA+TGG | 0.316923 | tig0021333:+67083 | Msa1390300:three_prime_UTR |
| AACCCATACACGCCACAATT+TGG | 0.328476 | tig0021333:-67086 | None:intergenic |
| ATAGTATTACCTTCATCTTC+AGG | 0.337204 | tig0021333:-63141 | None:intergenic |
| TCAAAATTTCCAAGGGTAGA+TGG | 0.343531 | tig0021333:-66718 | None:intergenic |
| ACAAGGAACACATGGGATTC+AGG | 0.346409 | tig0021333:+64491 | Msa1390300:CDS |
| TATCTTGAATGACTTAAGAT+TGG | 0.366253 | tig0021333:+66942 | Msa1390300:three_prime_UTR |
| GGAAAAGAGCTTCACTGTCT+TGG | 0.377000 | tig0021333:-64467 | None:intergenic |
| ATAGTAACCCTATTCTATTT+CGG | 0.379348 | tig0021333:-67047 | None:intergenic |
| CGAACCTGTTTAATAGCGTT+GGG | 0.387848 | tig0021333:-62911 | None:intergenic |
| GTTCAGAAGATTATGCTGAT+TGG | 0.398671 | tig0021333:+64992 | Msa1390300:CDS |
| ATCTCTTAGACTTCATAGAT+TGG | 0.400371 | tig0021333:+62846 | Msa1390300:CDS |
| GAATCCCATGTGTTCCTTGT+TGG | 0.401137 | tig0021333:-64488 | None:intergenic |
| TCGAGCGAGCGAGCAATGTC+TGG | 0.415846 | tig0021333:+62688 | Msa1390300:exon |
| ATATGCATCCGAAATAGAAT+AGG | 0.420531 | tig0021333:+67039 | Msa1390300:three_prime_UTR |
| CAGCTTGACAATATTTATTG+AGG | 0.448896 | tig0021333:+64940 | Msa1390300:intron |
| TCTCCCCAACGCTATTAAAC+AGG | 0.449659 | tig0021333:+62907 | Msa1390300:CDS |
| TATTCTCTTATAGGGAAAAC+CGG | 0.450332 | tig0021333:+64780 | Msa1390300:intron |
| CCGAACCTGTTTAATAGCGT+TGG | 0.450637 | tig0021333:-62912 | None:intergenic |
| TTGACATACTTTAAAAGTAC+CGG | 0.471646 | tig0021333:-64799 | None:intergenic |
| TATGCATCCGAAATAGAATA+GGG | 0.472594 | tig0021333:+67040 | Msa1390300:three_prime_UTR |
| AATTGTGGCGTGTATGGGTT+CGG | 0.473971 | tig0021333:+67089 | Msa1390300:three_prime_UTR |
| ATGTCAAATTTCAAAATGTC+CGG | 0.480329 | tig0021333:+64815 | Msa1390300:CDS |
| CACCAAATTGTGGCGTGTAT+GGG | 0.483217 | tig0021333:+67084 | Msa1390300:three_prime_UTR |
| ACCCTTGTGAACAGCGGTGG+TGG | 0.483236 | tig0021333:-62719 | None:intergenic |
| CTTTATTCAGTTGCTTTCAA+AGG | 0.501742 | tig0021333:+63117 | Msa1390300:CDS |
| GGTGTGACAATTTATGTGAT+AGG | 0.502172 | tig0021333:+66841 | Msa1390300:three_prime_UTR |
| ATTTCCAATCAAAATTTCCA+AGG | 0.510535 | tig0021333:-66726 | None:intergenic |
| TCTGCACATCCATCTACCCT+TGG | 0.510956 | tig0021333:+66709 | Msa1390300:three_prime_UTR |
| AGTTTAATAACTTGAGTGAA+AGG | 0.521408 | tig0021333:-63096 | None:intergenic |
| GAAGGGTTTGAAGAAGATTG+AGG | 0.521516 | tig0021333:+66651 | Msa1390300:CDS |
| CCATACACGCCACAATTTGG+TGG | 0.524359 | tig0021333:-67083 | None:intergenic |
| TTAGACTTCATAGATTGGAC+TGG | 0.525278 | tig0021333:+62851 | Msa1390300:CDS |
| TAGGGTTATAGAGAAGATGA+TGG | 0.528724 | tig0021333:+63027 | Msa1390300:intron |
| TGTTAAACAGTATATCTGCT+TGG | 0.533996 | tig0021333:+66819 | Msa1390300:three_prime_UTR |
| AGCCACCACCGCTGTTCACA+AGG | 0.536518 | tig0021333:+62717 | Msa1390300:CDS |
| AGTTGAAACAACGGACATGA+AGG | 0.536929 | tig0021333:+66633 | Msa1390300:CDS |
| GTTAAACAGTATATCTGCTT+GGG | 0.538527 | tig0021333:+66820 | Msa1390300:three_prime_UTR |
| AAAATTAATGTATCACTTGG+TGG | 0.546577 | tig0021333:-64630 | None:intergenic |
| GACAAAATTAATGTATCACT+TGG | 0.564267 | tig0021333:-64633 | None:intergenic |
| TTGGAGCTAGACTACATTGA+CGG | 0.576277 | tig0021333:+66961 | Msa1390300:three_prime_UTR |
| TTCAAAGGTCCTGAAGATGA+AGG | 0.580336 | tig0021333:+63132 | Msa1390300:CDS |
| TATGGAAAGAGAGAGAAGAG+AGG | 0.580454 | tig0021333:-62642 | None:intergenic |
| TTTGTCTCCTGAAAACCTCA+AGG | 0.583750 | tig0021333:+64650 | Msa1390300:CDS |
| TTTCCAATCAAAATTTCCAA+GGG | 0.596549 | tig0021333:-66725 | None:intergenic |
| AAAAGAGCTTCACTGTCTTG+GGG | 0.597831 | tig0021333:-64465 | None:intergenic |
| GTTGAAACAACGGACATGAA+GGG | 0.604552 | tig0021333:+66634 | Msa1390300:CDS |
| TACTTGACCCTTGTGAACAG+CGG | 0.613002 | tig0021333:-62725 | None:intergenic |
| TCAAATTTCAAAATGTCCGG+AGG | 0.653931 | tig0021333:+64818 | Msa1390300:CDS |
| TTGACCCTTGTGAACAGCGG+TGG | 0.656088 | tig0021333:-62722 | None:intergenic |
| GATGTAATGTTCAAGCTGCA+TGG | 0.657411 | tig0021333:+66863 | Msa1390300:three_prime_UTR |
| GAACCTGTTTAATAGCGTTG+GGG | 0.669005 | tig0021333:-62910 | None:intergenic |
| GCCACCACCGCTGTTCACAA+GGG | 0.677895 | tig0021333:+62718 | Msa1390300:CDS |
| TTGATGCAGAGTTGAAACAA+CGG | 0.696444 | tig0021333:+66624 | Msa1390300:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTATTAATTTAATC+AGG | + | tig0021333:62820-62839 | Msa1390300:intron | 10.0% |
| !!! | TTTTTTTACTAATGAAAATT+AGG | + | tig0021333:63008-63027 | Msa1390300:intron | 10.0% |
| !!! | TTTTTTACTAATGAAAATTA+GGG | + | tig0021333:63009-63028 | Msa1390300:intron | 10.0% |
| !!! | ATTTTTATTTTTTGAAAACT+CGG | + | tig0021333:63483-63502 | Msa1390300:intron | 10.0% |
| !! | AAAATTAATAAATAATGTCT+TGG | - | tig0021333:64001-64020 | None:intergenic | 10.0% |
| !! | TAGAAAATTTAAATAAATTG+AGG | - | tig0021333:64139-64158 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTCTATCATATT+TGG | + | tig0021333:64730-64749 | Msa1390300:intron | 10.0% |
| !!! | TATTTAATTTATTCTCTTAT+AGG | + | tig0021333:64771-64790 | Msa1390300:intron | 10.0% |
| !!! | ATTTAATTTATTCTCTTATA+GGG | + | tig0021333:64772-64791 | Msa1390300:intron | 10.0% |
| !!! | AAGTCAAATATTATTTTATT+TGG | - | tig0021333:65202-65221 | None:intergenic | 10.0% |
| !!! | AATAAAAAAAAAAGGGTTTT+TGG | - | tig0021333:62951-62970 | None:intergenic | 15.0% |
| !! | GTAACACAATAAAAAAAAAA+GGG | - | tig0021333:62958-62977 | None:intergenic | 15.0% |
| !! | AGTAACACAATAAAAAAAAA+AGG | - | tig0021333:62959-62978 | None:intergenic | 15.0% |
| !! | TTATATGATATGAATGAATA+AGG | - | tig0021333:63172-63191 | None:intergenic | 15.0% |
| !! | AAAACCATTAAAATAAATTG+AGG | - | tig0021333:64033-64052 | None:intergenic | 15.0% |
| !! | TAACAATAATGTTATACATT+TGG | + | tig0021333:65226-65245 | Msa1390300:intron | 15.0% |
| !! | AACAATAATGTTATACATTT+GGG | + | tig0021333:65227-65246 | Msa1390300:intron | 15.0% |
| !!! | AAATTTATGAATGAATGTTT+TGG | + | tig0021333:65273-65292 | Msa1390300:intron | 15.0% |
| !!! | TATTTTCTTTTTCAAATGTT+TGG | + | tig0021333:66891-66910 | Msa1390300:three_prime_UTR | 15.0% |
| !!! | ATTTTCTTTTTCAAATGTTT+GGG | + | tig0021333:66892-66911 | Msa1390300:three_prime_UTR | 15.0% |
| !!! | CTTTAAAAGAAAAACTAATA+TGG | - | tig0021333:66989-67008 | None:intergenic | 15.0% |
| !!! | GATTATGATGATGAATAATA+GGG | - | tig0021333:62760-62779 | None:intergenic | 20.0% |
| !! | AAAGAAAAAGATTAGTAACT+AGG | - | tig0021333:62807-62826 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCAAACATTAG+CGG | + | tig0021333:63378-63397 | Msa1390300:intron | 20.0% |
| !!! | ATCGACTATTTATATTTTCA+TGG | + | tig0021333:63885-63904 | Msa1390300:intron | 20.0% |
| !!! | GATACCTCAATTTATTTTAA+TGG | + | tig0021333:64026-64045 | Msa1390300:intron | 20.0% |
| !!! | TTTAAGACTATATACCATTA+TGG | - | tig0021333:64232-64251 | None:intergenic | 20.0% |
| !!! | TTTTTTGACATGATTGTAAT+CGG | + | tig0021333:64422-64441 | Msa1390300:intron | 20.0% |
| !! | GCTATTAAAACAAACAAATT+TGG | - | tig0021333:64533-64552 | None:intergenic | 20.0% |
| !! | CTTTATAAAAGTAGGAAATA+AGG | - | tig0021333:64855-64874 | None:intergenic | 20.0% |
| !! | ACAATAATGTTATACATTTG+GGG | + | tig0021333:65228-65247 | Msa1390300:intron | 20.0% |
| !! | GAGGAATAAATCATATAAAA+TGG | + | tig0021333:65764-65783 | Msa1390300:intron | 20.0% |
| !! | AACCTAATTTGATTGATATA+AGG | - | tig0021333:66374-66393 | None:intergenic | 20.0% |
| !! | TTGGGTAATATGTAAAAAAT+TGG | + | tig0021333:66910-66929 | Msa1390300:three_prime_UTR | 20.0% |
| !! | TGGGTAATATGTAAAAAATT+GGG | + | tig0021333:66911-66930 | Msa1390300:three_prime_UTR | 20.0% |
| !!! | ATTTTTTAGAAAAGCAAAGT+AGG | - | tig0021333:67021-67040 | None:intergenic | 20.0% |
| !! | CGATTATGATGATGAATAAT+AGG | - | tig0021333:62761-62780 | None:intergenic | 25.0% |
| ! | AGTTTAATAACTTGAGTGAA+AGG | - | tig0021333:63099-63118 | None:intergenic | 25.0% |
| !!! | TGTACAATCATATTTGTTGT+GGG | - | tig0021333:63237-63256 | None:intergenic | 25.0% |
| !! | ATGTACAATCATATTTGTTG+TGG | - | tig0021333:63238-63257 | None:intergenic | 25.0% |
| ! | TATTGAATGTAATCACATGT+TGG | - | tig0021333:63349-63368 | None:intergenic | 25.0% |
| ! | ACATGTATAGATACCAAAAT+GGG | - | tig0021333:63453-63472 | None:intergenic | 25.0% |
| ! | TACATGTATAGATACCAAAA+TGG | - | tig0021333:63454-63473 | None:intergenic | 25.0% |
| !! | GATTCGAAGTATTCAAATAT+AGG | - | tig0021333:63766-63785 | None:intergenic | 25.0% |
| !! | TAGCTAATCATTTTCTTAAG+TGG | + | tig0021333:64278-64297 | Msa1390300:intron | 25.0% |
| ! | CTCATTATAAAATTCTTCCA+AGG | - | tig0021333:64313-64332 | None:intergenic | 25.0% |
| !! | GGAAGAATTTTATAATGAGA+TGG | + | tig0021333:64314-64333 | Msa1390300:intron | 25.0% |
| !! | AGAATTTTATAATGAGATGG+AGG | + | tig0021333:64317-64336 | Msa1390300:intron | 25.0% |
| ! | AAAATTAATGTATCACTTGG+TGG | - | tig0021333:64633-64652 | None:intergenic | 25.0% |
| ! | GACAAAATTAATGTATCACT+TGG | - | tig0021333:64636-64655 | None:intergenic | 25.0% |
| !! | TTGACATACTTTAAAAGTAC+CGG | - | tig0021333:64802-64821 | None:intergenic | 25.0% |
| ! | ATGTCAAATTTCAAAATGTC+CGG | + | tig0021333:64815-64834 | Msa1390300:CDS | 25.0% |
| ! | AAATAATACCCCAAATAAAG+GGG | - | tig0021333:65161-65180 | None:intergenic | 25.0% |
| ! | CAAATAATACCCCAAATAAA+GGG | - | tig0021333:65162-65181 | None:intergenic | 25.0% |
| ! | ACAAATAATACCCCAAATAA+AGG | - | tig0021333:65163-65182 | None:intergenic | 25.0% |
| ! | AGAAGAATAGATCATACAAA+TGG | + | tig0021333:65400-65419 | Msa1390300:intron | 25.0% |
| ! | AATGTATTGGAGAGAAAATA+TGG | + | tig0021333:65656-65675 | Msa1390300:intron | 25.0% |
| ! | ATGTATTGGAGAGAAAATAT+GGG | + | tig0021333:65657-65676 | Msa1390300:intron | 25.0% |
| ! | TTATGATGTCAACTAATTTG+TGG | + | tig0021333:65892-65911 | Msa1390300:intron | 25.0% |
| ! | TGCAAAACAAAAAGATTATG+TGG | - | tig0021333:66015-66034 | None:intergenic | 25.0% |
| ! | ATTAAGTACCAATTCCAATA+TGG | - | tig0021333:66068-66087 | None:intergenic | 25.0% |
| !!! | GGTCAGACATTTTAAAATTT+CGG | - | tig0021333:66219-66238 | None:intergenic | 25.0% |
| !!! | ATTTTAAAATGTCTGACCAA+TGG | + | tig0021333:66221-66240 | Msa1390300:intron | 25.0% |
| ! | TGCCTTATATCAATCAAATT+AGG | + | tig0021333:66369-66388 | Msa1390300:intron | 25.0% |
| !!! | TCGAACATTTTGAAAATTGT+AGG | + | tig0021333:66536-66555 | Msa1390300:intron | 25.0% |
| ! | TTTCCAATCAAAATTTCCAA+GGG | - | tig0021333:66728-66747 | None:intergenic | 25.0% |
| ! | ATTTCCAATCAAAATTTCCA+AGG | - | tig0021333:66729-66748 | None:intergenic | 25.0% |
| ! | ATATTCAGCTTCATGAATAA+TGG | + | tig0021333:66752-66771 | Msa1390300:three_prime_UTR | 25.0% |
| ! | GGGTAATATGTAAAAAATTG+GGG | + | tig0021333:66912-66931 | Msa1390300:three_prime_UTR | 25.0% |
| ! | TATCTTGAATGACTTAAGAT+TGG | + | tig0021333:66942-66961 | Msa1390300:three_prime_UTR | 25.0% |
| ! | ATAGTAACCCTATTCTATTT+CGG | - | tig0021333:67050-67069 | None:intergenic | 25.0% |
| ATCTCTTAGACTTCATAGAT+TGG | + | tig0021333:62846-62865 | Msa1390300:CDS | 30.0% | |
| ! | CTTTATTCAGTTGCTTTCAA+AGG | + | tig0021333:63117-63136 | Msa1390300:CDS | 30.0% |
| ATAGTATTACCTTCATCTTC+AGG | - | tig0021333:63144-63163 | None:intergenic | 30.0% | |
| ATGTATAGATACCAAAATGG+GGG | - | tig0021333:63451-63470 | None:intergenic | 30.0% | |
| CATGTATAGATACCAAAATG+GGG | - | tig0021333:63452-63471 | None:intergenic | 30.0% | |
| TGCTAACAAGATGTAAAGTT+TGG | - | tig0021333:63726-63745 | None:intergenic | 30.0% | |
| AGTTAGTTCCTGTATTTGTT+AGG | + | tig0021333:63820-63839 | Msa1390300:intron | 30.0% | |
| GAGTTTAACCTAACAAATAC+AGG | - | tig0021333:63831-63850 | None:intergenic | 30.0% | |
| TATAGTAACATGTTACGCTT+TGG | - | tig0021333:63862-63881 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | tig0021333:64046-64065 | Msa1390300:intron | 30.0% |
| AACATCGCATTAATTTAGAG+TGG | - | tig0021333:64201-64220 | None:intergenic | 30.0% | |
| TTGGTGAAGATGTATTTGTA+GGG | - | tig0021333:64372-64391 | None:intergenic | 30.0% | |
| ATTGGTGAAGATGTATTTGT+AGG | - | tig0021333:64373-64392 | None:intergenic | 30.0% | |
| ! | AAAAAAGTGCAGTAGCAAAT+TGG | - | tig0021333:64391-64410 | None:intergenic | 30.0% |
| TATTCTCTTATAGGGAAAAC+CGG | + | tig0021333:64780-64799 | Msa1390300:intron | 30.0% | |
| TAAGGAAAATAACATACCTC+CGG | - | tig0021333:64837-64856 | None:intergenic | 30.0% | |
| AATTGGATGAGAAAAATGGA+AGG | - | tig0021333:64880-64899 | None:intergenic | 30.0% | |
| !! | TTCCATTTTTCTCATCCAAT+TGG | + | tig0021333:64879-64898 | Msa1390300:intron | 30.0% |
| CTCAATAAATATTGTCAAGC+TGG | - | tig0021333:64942-64961 | None:intergenic | 30.0% | |
| CAGCTTGACAATATTTATTG+AGG | + | tig0021333:64940-64959 | Msa1390300:intron | 30.0% | |
| ATAATGTTATACATTTGGGG+TGG | + | tig0021333:65231-65250 | Msa1390300:intron | 30.0% | |
| !!! | AATGTTTTGGAGAGAAAGTA+GGG | + | tig0021333:65286-65305 | Msa1390300:intron | 30.0% |
| TGCTAAAATTCCATCATATG+TGG | + | tig0021333:65331-65350 | Msa1390300:intron | 30.0% | |
| AAATTCCATCATATGTGGTT+TGG | + | tig0021333:65336-65355 | Msa1390300:intron | 30.0% | |
| AATTCCATCATATGTGGTTT+GGG | + | tig0021333:65337-65356 | Msa1390300:intron | 30.0% | |
| GCCTAATACTTAAAGGTAAA+AGG | + | tig0021333:65434-65453 | Msa1390300:intron | 30.0% | |
| ! | GCCTTTTACCTTTAAGTATT+AGG | - | tig0021333:65438-65457 | None:intergenic | 30.0% |
| CAAATCTAAACCCTTTCTAA+TGG | - | tig0021333:65485-65504 | None:intergenic | 30.0% | |
| AGAAAGGGTTTAGATTTGAA+TGG | + | tig0021333:65487-65506 | Msa1390300:intron | 30.0% | |
| AGGTTTGTGAATGAATGTAT+TGG | + | tig0021333:65643-65662 | Msa1390300:intron | 30.0% | |
| TGCTAAAATTTCAACTTGTG+TGG | + | tig0021333:65701-65720 | Msa1390300:intron | 30.0% | |
| AAATTTCAACTTGTGTGGTT+TGG | + | tig0021333:65706-65725 | Msa1390300:intron | 30.0% | |
| AATTTCAACTTGTGTGGTTT+GGG | + | tig0021333:65707-65726 | Msa1390300:intron | 30.0% | |
| ! | CCTTTTACCTTTTACGTATT+AGG | - | tig0021333:65793-65812 | None:intergenic | 30.0% |
| CCTAATACGTAAAAGGTAAA+AGG | + | tig0021333:65790-65809 | Msa1390300:intron | 30.0% | |
| TATAAGTCAGACCATTAAGA+AGG | + | tig0021333:65827-65846 | Msa1390300:intron | 30.0% | |
| ATAAGTCAGACCATTAAGAA+GGG | + | tig0021333:65828-65847 | Msa1390300:intron | 30.0% | |
| CAAATCTAAACCCTTCTTAA+TGG | - | tig0021333:65841-65860 | None:intergenic | 30.0% | |
| TTGCAATGTGATCTACAAAT+TGG | + | tig0021333:66030-66049 | Msa1390300:intron | 30.0% | |
| TACTTAATTGTCTTGCTTGT+GGG | + | tig0021333:66080-66099 | Msa1390300:intron | 30.0% | |
| TAATTCAAAGAACGAAAGTG+TGG | - | tig0021333:66106-66125 | None:intergenic | 30.0% | |
| TCATCAACATTCAATCTCAA+AGG | - | tig0021333:66264-66283 | None:intergenic | 30.0% | |
| !!! | CAACACATATTTTGATGACA+TGG | + | tig0021333:66411-66430 | Msa1390300:intron | 30.0% |
| !!! | TTGACTCATACTTTTTTACG+AGG | - | tig0021333:66685-66704 | None:intergenic | 30.0% |
| TGTTAAACAGTATATCTGCT+TGG | + | tig0021333:66819-66838 | Msa1390300:three_prime_UTR | 30.0% | |
| GTTAAACAGTATATCTGCTT+GGG | + | tig0021333:66820-66839 | Msa1390300:three_prime_UTR | 30.0% | |
| ATATGCATCCGAAATAGAAT+AGG | + | tig0021333:67039-67058 | Msa1390300:three_prime_UTR | 30.0% | |
| TATGCATCCGAAATAGAATA+GGG | + | tig0021333:67040-67059 | Msa1390300:three_prime_UTR | 30.0% | |
| ! | CGATTTGTTTGTGCGATATA+TGG | - | tig0021333:62663-62682 | None:intergenic | 35.0% |
| TTAGACTTCATAGATTGGAC+TGG | + | tig0021333:62851-62870 | Msa1390300:CDS | 35.0% | |
| TAGGGTTATAGAGAAGATGA+TGG | + | tig0021333:63027-63046 | Msa1390300:intron | 35.0% | |
| TGTGGGAATCAGGAAAAAAT+AGG | - | tig0021333:63220-63239 | None:intergenic | 35.0% | |
| !! | TCATATTTGTTGTGGGAATC+AGG | - | tig0021333:63230-63249 | None:intergenic | 35.0% |
| ACTCTGACACATTTGATTGA+AGG | + | tig0021333:63282-63301 | Msa1390300:intron | 35.0% | |
| TGTATAGATACCAAAATGGG+GGG | - | tig0021333:63450-63469 | None:intergenic | 35.0% | |
| TGGTATCTATACATGTACAG+TGG | + | tig0021333:63457-63476 | Msa1390300:intron | 35.0% | |
| TCTTAAGACTGACTAATTCG+AGG | + | tig0021333:63513-63532 | Msa1390300:intron | 35.0% | |
| CTTAAGACTGACTAATTCGA+GGG | + | tig0021333:63514-63533 | Msa1390300:intron | 35.0% | |
| TTAAGACTGACTAATTCGAG+GGG | + | tig0021333:63515-63534 | Msa1390300:intron | 35.0% | |
| ! | TAAGCCTTATCCAACTAAGT+GGG | - | tig0021333:64095-64114 | None:intergenic | 35.0% |
| GATGTTCTACTCTTCCATAA+TGG | + | tig0021333:64215-64234 | Msa1390300:intron | 35.0% | |
| ! | TTTTCCAACAAGGAACACAT+GGG | + | tig0021333:64484-64503 | Msa1390300:CDS | 35.0% |
| !! | TGAGCATAGTTAATGGACTT+GGG | - | tig0021333:64697-64716 | None:intergenic | 35.0% |
| !! | TTGAGCATAGTTAATGGACT+TGG | - | tig0021333:64698-64717 | None:intergenic | 35.0% |
| TCAAATTTCAAAATGTCCGG+AGG | + | tig0021333:64818-64837 | Msa1390300:CDS | 35.0% | |
| !! | GGAAGGCACTTTATAAAAGT+AGG | - | tig0021333:64863-64882 | None:intergenic | 35.0% |
| CACCAATTGGATGAGAAAAA+TGG | - | tig0021333:64884-64903 | None:intergenic | 35.0% | |
| ! | CATTTTTCTCATCCAATTGG+TGG | + | tig0021333:64882-64901 | Msa1390300:intron | 35.0% |
| GTTCAGAAGATTATGCTGAT+TGG | + | tig0021333:64992-65011 | Msa1390300:CDS | 35.0% | |
| TAGGTATTTCTTCACACCAA+AGG | - | tig0021333:65086-65105 | None:intergenic | 35.0% | |
| CAAGTGTCAAATGGTTCAAT+AGG | - | tig0021333:65105-65124 | None:intergenic | 35.0% | |
| GGTAAAATGCAAGTGTCAAA+TGG | - | tig0021333:65114-65133 | None:intergenic | 35.0% | |
| !!! | GAATGTTTTGGAGAGAAAGT+AGG | + | tig0021333:65285-65304 | Msa1390300:intron | 35.0% |
| !!! | ATGTTTTGGAGAGAAAGTAG+GGG | + | tig0021333:65287-65306 | Msa1390300:intron | 35.0% |
| CTTTAAGTATTAGGCAACCT+AGG | - | tig0021333:65429-65448 | None:intergenic | 35.0% | |
| CTAGGTTGCCTAATACTTAA+AGG | + | tig0021333:65427-65446 | Msa1390300:intron | 35.0% | |
| TACAAGTCAGACCATTAGAA+AGG | + | tig0021333:65471-65490 | Msa1390300:intron | 35.0% | |
| ACAAGTCAGACCATTAGAAA+GGG | + | tig0021333:65472-65491 | Msa1390300:intron | 35.0% | |
| GTGGTAAACAACAACAATGA+AGG | - | tig0021333:65588-65607 | None:intergenic | 35.0% | |
| AGAGGAAACTGACAATTAAG+TGG | - | tig0021333:65607-65626 | None:intergenic | 35.0% | |
| ! | CTTATTGTTTCTTCTGCTAG+AGG | - | tig0021333:65625-65644 | None:intergenic | 35.0% |
| CTCTAGCAGAAGAAACAATA+AGG | + | tig0021333:65623-65642 | Msa1390300:intron | 35.0% | |
| ATGGTAGCCTAATACGTAAA+AGG | + | tig0021333:65783-65802 | Msa1390300:intron | 35.0% | |
| AAGAAGGGTTTAGATTTGAG+TGG | + | tig0021333:65843-65862 | Msa1390300:intron | 35.0% | |
| ! | TGATGTCAACTAATTTGTGG+AGG | + | tig0021333:65895-65914 | Msa1390300:intron | 35.0% |
| ! | GAATAAAGGTTTTCCCTACT+AGG | - | tig0021333:65929-65948 | None:intergenic | 35.0% |
| GTGGTAAGCAACAAGAATAA+AGG | - | tig0021333:65943-65962 | None:intergenic | 35.0% | |
| TAGCAGAAGAAACGATAAGA+CGG | + | tig0021333:65981-66000 | Msa1390300:intron | 35.0% | |
| TCGTATTGCCATATTGGAAT+TGG | + | tig0021333:66057-66076 | Msa1390300:intron | 35.0% | |
| GTACTTAATTGTCTTGCTTG+TGG | + | tig0021333:66079-66098 | Msa1390300:intron | 35.0% | |
| GAGACCAAATCTGTGAATAT+GGG | - | tig0021333:66197-66216 | None:intergenic | 35.0% | |
| !! | AAAAGCATTTCCAAATGCAC+AGG | + | tig0021333:66501-66520 | Msa1390300:intron | 35.0% |
| TTGATGCAGAGTTGAAACAA+CGG | + | tig0021333:66624-66643 | Msa1390300:intron | 35.0% | |
| TCAAAATTTCCAAGGGTAGA+TGG | - | tig0021333:66721-66740 | None:intergenic | 35.0% | |
| !! | CTACCCTTGGAAATTTTGAT+TGG | + | tig0021333:66722-66741 | Msa1390300:three_prime_UTR | 35.0% |
| GGTGTGACAATTTATGTGAT+AGG | + | tig0021333:66841-66860 | Msa1390300:three_prime_UTR | 35.0% | |
| ! | GATTTTCTTCCACCAAATTG+TGG | + | tig0021333:67074-67093 | Msa1390300:three_prime_UTR | 35.0% |
| TATGGAAAGAGAGAGAAGAG+AGG | - | tig0021333:62645-62664 | None:intergenic | 40.0% | |
| GAACCTGTTTAATAGCGTTG+GGG | - | tig0021333:62913-62932 | None:intergenic | 40.0% | |
| CGAACCTGTTTAATAGCGTT+GGG | - | tig0021333:62914-62933 | None:intergenic | 40.0% | |
| CCAACGCTATTAAACAGGTT+CGG | + | tig0021333:62912-62931 | Msa1390300:intron | 40.0% | |
| TTCAAAGGTCCTGAAGATGA+AGG | + | tig0021333:63132-63151 | Msa1390300:CDS | 40.0% | |
| ! | CAGAGTGTTAAGTGTACATG+TGG | - | tig0021333:63268-63287 | None:intergenic | 40.0% |
| ATGTAATCACATGTTGGTGC+TGG | - | tig0021333:63343-63362 | None:intergenic | 40.0% | |
| !! | TGCTTTGCTCTGGCTTTAAA+CGG | - | tig0021333:63569-63588 | None:intergenic | 40.0% |
| GTCTCATCTTTGATTATCCC+CGG | - | tig0021333:63622-63641 | None:intergenic | 40.0% | |
| ATCAAAGATGAGACCTTGAG+AGG | + | tig0021333:63628-63647 | Msa1390300:intron | 40.0% | |
| ! | CTAAGCCTTATCCAACTAAG+TGG | - | tig0021333:64096-64115 | None:intergenic | 40.0% |
| GTAGGTGTAGTGAAGTAGTT+AGG | - | tig0021333:64166-64185 | None:intergenic | 40.0% | |
| GAGTGGTTAAAAGTAGCAGT+AGG | - | tig0021333:64184-64203 | None:intergenic | 40.0% | |
| TTAAGTGGTGTTCATCACCT+TGG | + | tig0021333:64293-64312 | Msa1390300:intron | 40.0% | |
| !! | TGTATTTGTAGGGTGCTGTA+AGG | - | tig0021333:64362-64381 | None:intergenic | 40.0% |
| !!! | CGGAGTCAATGTTGTTTTCT+AGG | + | tig0021333:64442-64461 | Msa1390300:intron | 40.0% |
| AAAAGAGCTTCACTGTCTTG+GGG | - | tig0021333:64468-64487 | None:intergenic | 40.0% | |
| GAAAAGAGCTTCACTGTCTT+GGG | - | tig0021333:64469-64488 | None:intergenic | 40.0% | |
| ! | AGTGAAGCTCTTTTCCAACA+AGG | + | tig0021333:64474-64493 | Msa1390300:CDS | 40.0% |
| ! | CTTTTCCAACAAGGAACACA+TGG | + | tig0021333:64483-64502 | Msa1390300:CDS | 40.0% |
| GATTCAGGTATAGCTTGGTT+TGG | + | tig0021333:64506-64525 | Msa1390300:intron | 40.0% | |
| CTTGTGCCCTGTGATTAAAT+CGG | + | tig0021333:64554-64573 | Msa1390300:intron | 40.0% | |
| ! | CAGCAACCGATTTAATCACA+GGG | - | tig0021333:64563-64582 | None:intergenic | 40.0% |
| ! | TCAGCAACCGATTTAATCAC+AGG | - | tig0021333:64564-64583 | None:intergenic | 40.0% |
| TTTGTCTCCTGAAAACCTCA+AGG | + | tig0021333:64650-64669 | Msa1390300:CDS | 40.0% | |
| TGGACTTGGGAGAAAAGTTA+TGG | - | tig0021333:64684-64703 | None:intergenic | 40.0% | |
| GCGACATTGAGCATAGTTAA+TGG | - | tig0021333:64704-64723 | None:intergenic | 40.0% | |
| ! | TTTTCTCATCCAATTGGTGG+TGG | + | tig0021333:64885-64904 | Msa1390300:intron | 40.0% |
| ! | TTTCTCATCCAATTGGTGGT+GGG | + | tig0021333:64886-64905 | Msa1390300:intron | 40.0% |
| ! | CTACAGCTTTGTGTTTCCTT+TGG | + | tig0021333:65067-65086 | Msa1390300:intron | 40.0% |
| AAGTCCCAAACCACATATGA+TGG | - | tig0021333:65344-65363 | None:intergenic | 40.0% | |
| ! | TCATATGTGGTTTGGGACTT+TGG | + | tig0021333:65344-65363 | Msa1390300:intron | 40.0% |
| ! | GTTTGGGACTTTGGTATATG+TGG | + | tig0021333:65353-65372 | Msa1390300:intron | 40.0% |
| TTCTTACCGAGACTTGTCTA+TGG | - | tig0021333:65384-65403 | None:intergenic | 40.0% | |
| GATCATACAAATGGTAGCCT+AGG | + | tig0021333:65409-65428 | Msa1390300:intron | 40.0% | |
| TTATGATGTCGAGTAAGCTG+TGG | + | tig0021333:65537-65556 | Msa1390300:intron | 40.0% | |
| ! | AAGGTTTTCCCTACTAGGTA+AGG | - | tig0021333:65569-65588 | None:intergenic | 40.0% |
| ! | CAATGAAGGTTTTCCCTACT+AGG | - | tig0021333:65574-65593 | None:intergenic | 40.0% |
| AGAGGAAACTAACAACTACG+TGG | - | tig0021333:65962-65981 | None:intergenic | 40.0% | |
| CTTATCGTTTCTTCTGCTAG+AGG | - | tig0021333:65980-65999 | None:intergenic | 40.0% | |
| GTCTCCCATATTCACAGATT+TGG | + | tig0021333:66190-66209 | Msa1390300:intron | 40.0% | |
| GGAGACCAAATCTGTGAATA+TGG | - | tig0021333:66198-66217 | None:intergenic | 40.0% | |
| ! | TTCAATCTCAAAGGCGTAAG+TGG | - | tig0021333:66255-66274 | None:intergenic | 40.0% |
| AGCATCTCACATTCTCACTT+GGG | - | tig0021333:66291-66310 | None:intergenic | 40.0% | |
| AGTTGAAACAACGGACATGA+AGG | + | tig0021333:66633-66652 | Msa1390300:CDS | 40.0% | |
| GTTGAAACAACGGACATGAA+GGG | + | tig0021333:66634-66653 | Msa1390300:CDS | 40.0% | |
| GAAGGGTTTGAAGAAGATTG+AGG | + | tig0021333:66651-66670 | Msa1390300:CDS | 40.0% | |
| GATGTAATGTTCAAGCTGCA+TGG | + | tig0021333:66863-66882 | Msa1390300:three_prime_UTR | 40.0% | |
| TTGGAGCTAGACTACATTGA+CGG | + | tig0021333:66961-66980 | Msa1390300:three_prime_UTR | 40.0% | |
| TACTTGACCCTTGTGAACAG+CGG | - | tig0021333:62728-62747 | None:intergenic | 45.0% | |
| TCTCCCCAACGCTATTAAAC+AGG | + | tig0021333:62907-62926 | Msa1390300:CDS | 45.0% | |
| CCGAACCTGTTTAATAGCGT+TGG | - | tig0021333:62915-62934 | None:intergenic | 45.0% | |
| CATGTGTCAAACACCTGAAC+TGG | - | tig0021333:63313-63332 | None:intergenic | 45.0% | |
| !! | GCTTTGCTCTGGCTTTAAAC+GGG | - | tig0021333:63568-63587 | None:intergenic | 45.0% |
| !! | AGCCAGAGCAAAGCATTGTA+TGG | + | tig0021333:63574-63593 | Msa1390300:intron | 45.0% |
| GTCCATACAATGCTTTGCTC+TGG | - | tig0021333:63579-63598 | None:intergenic | 45.0% | |
| !! | ATGGACTAGCCCACCAAAAT+TGG | + | tig0021333:63593-63612 | Msa1390300:intron | 45.0% |
| ! | TTATCCCCGGTTGCCAATTT+TGG | - | tig0021333:63609-63628 | None:intergenic | 45.0% |
| GATTTCAATGACTACCCTCC+AGG | - | tig0021333:63691-63710 | None:intergenic | 45.0% | |
| ATGTAGCCAACCCACTTAGT+TGG | + | tig0021333:64082-64101 | Msa1390300:intron | 45.0% | |
| CCTTATCCAACTAAGTGGGT+TGG | - | tig0021333:64091-64110 | None:intergenic | 45.0% | |
| CCAACCCACTTAGTTGGATA+AGG | + | tig0021333:64088-64107 | Msa1390300:intron | 45.0% | |
| GGAAAAGAGCTTCACTGTCT+TGG | - | tig0021333:64470-64489 | None:intergenic | 45.0% | |
| GAATCCCATGTGTTCCTTGT+TGG | - | tig0021333:64491-64510 | None:intergenic | 45.0% | |
| ACAAGGAACACATGGGATTC+AGG | + | tig0021333:64491-64510 | Msa1390300:CDS | 45.0% | |
| CATGGGATTCAGGTATAGCT+TGG | + | tig0021333:64501-64520 | Msa1390300:intron | 45.0% | |
| ! | GCAACTACCTTGAGGTTTTC+AGG | - | tig0021333:64660-64679 | None:intergenic | 45.0% |
| GTTATGGAGCAACTACCTTG+AGG | - | tig0021333:64668-64687 | None:intergenic | 45.0% | |
| GTCACAGCAGAACTGATAGA+TGG | - | tig0021333:65036-65055 | None:intergenic | 45.0% | |
| ATACCCCAAATAAAGGGGTG+AGG | - | tig0021333:65156-65175 | None:intergenic | 45.0% | |
| ! | TATACATTTGGGGTGGTCGA+TGG | + | tig0021333:65238-65257 | Msa1390300:intron | 45.0% |
| ! | ATACATTTGGGGTGGTCGAT+GGG | + | tig0021333:65239-65258 | Msa1390300:intron | 45.0% |
| GAGAAGCCATAGACAAGTCT+CGG | + | tig0021333:65375-65394 | Msa1390300:intron | 45.0% | |
| CTCTTACTGAGACTTGCCTA+TGG | - | tig0021333:65747-65766 | None:intergenic | 45.0% | |
| CATAGGCAAGTCTCAGTAAG+AGG | + | tig0021333:65745-65764 | Msa1390300:intron | 45.0% | |
| TGGAGGTGACTTTACCTAGT+AGG | + | tig0021333:65912-65931 | Msa1390300:intron | 45.0% | |
| GGAGGTGACTTTACCTAGTA+GGG | + | tig0021333:65913-65932 | Msa1390300:intron | 45.0% | |
| GGTGTGTCGTATTGCCATAT+TGG | + | tig0021333:66051-66070 | Msa1390300:intron | 45.0% | |
| GTAAGTGGAGAAATGGCCAT+TGG | - | tig0021333:66240-66259 | None:intergenic | 45.0% | |
| ! | CAAAGGCGTAAGTGGAGAAA+TGG | - | tig0021333:66247-66266 | None:intergenic | 45.0% |
| CAGCATCTCACATTCTCACT+TGG | - | tig0021333:66292-66311 | None:intergenic | 45.0% | |
| GAGAATGTGAGATGCTGATG+TGG | + | tig0021333:66295-66314 | Msa1390300:intron | 45.0% | |
| AGCATTTCCAAATGCACAGG+TGG | + | tig0021333:66504-66523 | Msa1390300:intron | 45.0% | |
| GCATTTCCAAATGCACAGGT+GGG | + | tig0021333:66505-66524 | Msa1390300:intron | 45.0% | |
| CATTTCCAAATGCACAGGTG+GGG | + | tig0021333:66506-66525 | Msa1390300:intron | 45.0% | |
| CACCAAATTGTGGCGTGTAT+GGG | + | tig0021333:67084-67103 | Msa1390300:three_prime_UTR | 45.0% | |
| AACCCATACACGCCACAATT+TGG | - | tig0021333:67089-67108 | None:intergenic | 45.0% | |
| AATTGTGGCGTGTATGGGTT+CGG | + | tig0021333:67089-67108 | Msa1390300:three_prime_UTR | 45.0% | |
| ! | ATTGAAGGCGTGTCCAGTTC+AGG | + | tig0021333:63297-63316 | Msa1390300:intron | 50.0% |
| ! | GAATGCGAATCCCCCCATTT+TGG | + | tig0021333:63437-63456 | Msa1390300:intron | 50.0% |
| AGCCCACCAAAATTGGCAAC+CGG | + | tig0021333:63600-63619 | Msa1390300:intron | 50.0% | |
| !! | GAACCCATTTGGGTTGGCTT+GGG | - | tig0021333:63669-63688 | None:intergenic | 50.0% |
| ! | AACCCAAATGGGTTCCTGGA+GGG | + | tig0021333:63674-63693 | Msa1390300:intron | 50.0% |
| TACCCTCCAGGAACCCATTT+GGG | - | tig0021333:63679-63698 | None:intergenic | 50.0% | |
| AAGTTGCTCCCACCACCAAT+TGG | - | tig0021333:64897-64916 | None:intergenic | 50.0% | |
| TGATGTCGAGTAAGCTGTGG+AGG | + | tig0021333:65540-65559 | Msa1390300:intron | 50.0% | |
| TGGAGGTGACCTTACCTAGT+AGG | + | tig0021333:65557-65576 | Msa1390300:intron | 50.0% | |
| GGAGGTGACCTTACCTAGTA+GGG | + | tig0021333:65558-65577 | Msa1390300:intron | 50.0% | |
| GGTGTATGTGCAGAAGCCAT+AGG | + | tig0021333:65728-65747 | Msa1390300:intron | 50.0% | |
| ! | TTTTGCCCCACCTGTGCATT+TGG | - | tig0021333:66514-66533 | None:intergenic | 50.0% |
| TCTGCACATCCATCTACCCT+TGG | + | tig0021333:66709-66728 | Msa1390300:three_prime_UTR | 50.0% | |
| CCATACACGCCACAATTTGG+TGG | - | tig0021333:67086-67105 | None:intergenic | 50.0% | |
| CCACCAAATTGTGGCGTGTA+TGG | + | tig0021333:67083-67102 | Msa1390300:three_prime_UTR | 50.0% | |
| TTGACCCTTGTGAACAGCGG+TGG | - | tig0021333:62725-62744 | None:intergenic | 55.0% | |
| CCAATCCCACCATCCACTTG+CGG | + | tig0021333:63539-63558 | Msa1390300:intron | 55.0% | |
| CAATCCCACCATCCACTTGC+GGG | + | tig0021333:63540-63559 | Msa1390300:intron | 55.0% | |
| AATCCCACCATCCACTTGCG+GGG | + | tig0021333:63541-63560 | Msa1390300:intron | 55.0% | |
| GCCCACCAAAATTGGCAACC+GGG | + | tig0021333:63601-63620 | Msa1390300:intron | 55.0% | |
| !! | CCCCGGTTGCCAATTTTGGT+GGG | - | tig0021333:63605-63624 | None:intergenic | 55.0% |
| CCCACCAAAATTGGCAACCG+GGG | + | tig0021333:63602-63621 | Msa1390300:intron | 55.0% | |
| ! | TCCCCGGTTGCCAATTTTGG+TGG | - | tig0021333:63606-63625 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | tig0021333:63644-63663 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | tig0021333:63642-63661 | Msa1390300:intron | 55.0% |
| !! | TTTGGGTTGGCTTGGGACCT+TGG | - | tig0021333:63662-63681 | None:intergenic | 55.0% |
| AGGTCCCAAGCCAACCCAAA+TGG | + | tig0021333:63662-63681 | Msa1390300:intron | 55.0% | |
| GGTCCCAAGCCAACCCAAAT+GGG | + | tig0021333:63663-63682 | Msa1390300:intron | 55.0% | |
| !! | GGAACCCATTTGGGTTGGCT+TGG | - | tig0021333:63670-63689 | None:intergenic | 55.0% |
| ! | AGCCAACCCAAATGGGTTCC+TGG | + | tig0021333:63670-63689 | Msa1390300:intron | 55.0% |
| CTCCAGGAACCCATTTGGGT+TGG | - | tig0021333:63675-63694 | None:intergenic | 55.0% | |
| ! | CAACCCAAATGGGTTCCTGG+AGG | + | tig0021333:63673-63692 | Msa1390300:intron | 55.0% |
| CTACCCTCCAGGAACCCATT+TGG | - | tig0021333:63680-63699 | None:intergenic | 55.0% | |
| AATAAAGGGGTGAGGCGGGA+GGG | - | tig0021333:65148-65167 | None:intergenic | 55.0% | |
| AAATAAAGGGGTGAGGCGGG+AGG | - | tig0021333:65149-65168 | None:intergenic | 55.0% | |
| TCCCGCCTCACCCCTTTATT+TGG | + | tig0021333:65148-65167 | Msa1390300:intron | 55.0% | |
| CCCAAATAAAGGGGTGAGGC+GGG | - | tig0021333:65152-65171 | None:intergenic | 55.0% | |
| ! | CCCGCCTCACCCCTTTATTT+GGG | + | tig0021333:65149-65168 | Msa1390300:intron | 55.0% |
| CCCCAAATAAAGGGGTGAGG+CGG | - | tig0021333:65153-65172 | None:intergenic | 55.0% | |
| ! | CCGCCTCACCCCTTTATTTG+GGG | + | tig0021333:65150-65169 | Msa1390300:intron | 55.0% |
| TCGAGCGAGCGAGCAATGTC+TGG | + | tig0021333:62688-62707 | Msa1390300:exon | 60.0% | |
| AGCCACCACCGCTGTTCACA+AGG | + | tig0021333:62717-62736 | Msa1390300:CDS | 60.0% | |
| GCCACCACCGCTGTTCACAA+GGG | + | tig0021333:62718-62737 | Msa1390300:CDS | 60.0% | |
| ACCCTTGTGAACAGCGGTGG+TGG | - | tig0021333:62722-62741 | None:intergenic | 60.0% | |
| !! | CCGCAAGTGGATGGTGGGAT+TGG | - | tig0021333:63542-63561 | None:intergenic | 60.0% |
| ATCCCACCATCCACTTGCGG+GGG | + | tig0021333:63542-63561 | Msa1390300:intron | 60.0% | |
| TTTAAACGGGCCCCCGCAAG+TGG | - | tig0021333:63555-63574 | None:intergenic | 60.0% | |
| ATAAAGGGGTGAGGCGGGAG+GGG | - | tig0021333:65147-65166 | None:intergenic | 60.0% | |
| GGCCCCCGCAAGTGGATGGT+GGG | - | tig0021333:63547-63566 | None:intergenic | 70.0% | |
| AACGGGCCCCCGCAAGTGGA+TGG | - | tig0021333:63551-63570 | None:intergenic | 70.0% | |
| GGCGGGAGGGGAGGGGAAAA+CGG | - | tig0021333:65135-65154 | None:intergenic | 70.0% | |
| GGGCCCCCGCAAGTGGATGG+TGG | - | tig0021333:63548-63567 | None:intergenic | 75.0% | |
| AGGGGTGAGGCGGGAGGGGA+GGG | - | tig0021333:65143-65162 | None:intergenic | 75.0% | |
| AAGGGGTGAGGCGGGAGGGG+AGG | - | tig0021333:65144-65163 | None:intergenic | 75.0% | |
| ! | GGGGTGAGGCGGGAGGGGAG+GGG | - | tig0021333:65142-65161 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021333 | gene | 62613 | 67136 | 62613 | ID=Msa1390300;Name=Msa1390300 |
| tig0021333 | mRNA | 62613 | 67136 | 62613 | ID=Msa1390300-mRNA-1;Parent=Msa1390300;Name=Msa1390300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=90|1|1|1|1|1|8|455|177 |
| tig0021333 | exon | 62613 | 62744 | 62613 | ID=Msa1390300-mRNA-1:exon:12091;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 62842 | 62928 | 62842 | ID=Msa1390300-mRNA-1:exon:12092;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 63030 | 63153 | 63030 | ID=Msa1390300-mRNA-1:exon:12093;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 64464 | 64512 | 64464 | ID=Msa1390300-mRNA-1:exon:12094;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 64614 | 64671 | 64614 | ID=Msa1390300-mRNA-1:exon:12095;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 64793 | 64839 | 64793 | ID=Msa1390300-mRNA-1:exon:12096;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 64943 | 65020 | 64943 | ID=Msa1390300-mRNA-1:exon:12097;Parent=Msa1390300-mRNA-1 |
| tig0021333 | exon | 66633 | 67136 | 66633 | ID=Msa1390300-mRNA-1:exon:12098;Parent=Msa1390300-mRNA-1 |
| tig0021333 | five_prime_UTR | 62613 | 62702 | 62613 | ID=Msa1390300-mRNA-1:five_prime_utr;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 62703 | 62744 | 62703 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 62842 | 62928 | 62842 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 63030 | 63153 | 63030 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 64464 | 64512 | 64464 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 64614 | 64671 | 64614 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 64793 | 64839 | 64793 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 64943 | 65020 | 64943 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | CDS | 66633 | 66681 | 66633 | ID=Msa1390300-mRNA-1:cds;Parent=Msa1390300-mRNA-1 |
| tig0021333 | three_prime_UTR | 66682 | 67136 | 66682 | ID=Msa1390300-mRNA-1:three_prime_utr;Parent=Msa1390300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
