AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526950 MtrunA17_Chr7g0270891 94.906 373 11 2 1 371 1 367 0.0 727
Msa0526950 MtrunA17_Chr1g0193801 63.265 392 91 17 1 362 1 369 5.96e-154 439
Msa0526950 MtrunA17_Chr1g0193371 50.282 354 147 7 1 345 1 334 1.19e-101 305
Msa0526950 MtrunA17_Chr4g0058631 78.146 151 32 1 1 151 1 150 2.57e-84 260
Msa0526950 MtrunA17_Chr7g0271241 77.707 157 33 1 1 157 1 155 1.35e-77 243
Msa0526950 MtrunA17_Chr1g0211161 56.481 216 84 1 3 218 4 209 7.15e-77 236
Msa0526950 MtrunA17_Chr3g0117091 76.056 142 33 1 1 141 1 142 1.45e-76 240
Msa0526950 MtrunA17_Chr2g0330041 71.429 133 38 0 1 133 1 133 5.21e-68 219
Msa0526950 MtrunA17_Chr8g0342521 75.610 123 30 0 1 123 1 123 3.66e-67 216
Msa0526950 MtrunA17_Chr8g0342541 74.797 123 31 0 1 123 1 123 1.85e-66 214
Msa0526950 MtrunA17_Chr2g0309911 70.769 130 37 1 1 130 1 129 1.16e-65 211
Msa0526950 MtrunA17_Chr4g0037141 51.934 181 80 1 1 181 1 174 4.67e-63 203
Msa0526950 MtrunA17_Chr3g0115821 65.909 132 45 0 1 132 1 132 1.56e-62 203
Msa0526950 MtrunA17_Chr4g0039971 50.505 198 89 2 1 194 2 194 1.81e-62 204
Msa0526950 MtrunA17_Chr8g0387421 72.034 118 33 0 1 118 1 118 5.97e-62 201
Msa0526950 MtrunA17_Chr8g0385321 66.667 132 44 0 1 132 1 132 6.35e-62 201
Msa0526950 MtrunA17_Chr8g0342481 75.214 117 28 1 1 116 1 117 1.39e-60 200
Msa0526950 MtrunA17_Chr3g0131121 64.885 131 46 0 1 131 1 131 1.67e-60 197
Msa0526950 MtrunA17_Chr5g0410961 41.034 290 128 9 1 282 1 255 1.77e-60 198
Msa0526950 MtrunA17_Chr6g0453471 67.188 128 42 0 1 128 1 128 3.17e-60 198
Msa0526950 MtrunA17_Chr7g0217741 65.909 132 45 0 1 132 1 132 4.57e-60 196
Msa0526950 MtrunA17_Chr4g0042671 67.188 128 42 0 1 128 1 128 8.76e-60 198
Msa0526950 MtrunA17_Chr5g0395281 70.833 120 35 0 12 131 12 131 1.11e-59 195
Msa0526950 MtrunA17_Chr5g0434571 60.690 145 57 0 1 145 37 181 4.54e-59 195
Msa0526950 MtrunA17_Chr5g0397231 73.636 110 29 0 1 110 1 110 9.41e-59 193
Msa0526950 MtrunA17_Chr7g0228891 45.833 216 114 2 1 213 1 216 1.05e-58 191
Msa0526950 MtrunA17_Chr3g0110351 66.923 130 43 0 1 130 1 130 1.47e-58 192
Msa0526950 MtrunA17_Chr2g0281071 65.891 129 43 1 1 128 1 129 2.46e-58 192
Msa0526950 MtrunA17_Chr3g0103281 59.091 154 60 1 1 154 1 151 2.55e-58 192
Msa0526950 MtrunA17_Chr2g0323411 67.188 128 42 0 1 128 1 128 6.22e-58 191
Msa0526950 MtrunA17_Chr1g0203411 54.598 174 71 2 1 168 1 172 9.96e-58 189
Msa0526950 MtrunA17_Chr4g0048511 65.116 129 44 1 1 128 1 129 1.09e-57 191
Msa0526950 MtrunA17_Chr5g0435101 63.200 125 46 0 3 127 2 126 1.17e-57 186
Msa0526950 MtrunA17_Chr6g0452271 62.121 132 50 0 1 132 1 132 1.20e-57 191
Msa0526950 MtrunA17_Chr8g0349261 66.667 132 42 2 1 130 1 132 2.53e-57 188
Msa0526950 MtrunA17_Chr4g0032401 74.107 112 29 0 11 122 16 127 2.72e-57 189
Msa0526950 MtrunA17_Chr4g0057031 63.359 131 48 0 1 131 1 131 3.68e-57 187
Msa0526950 MtrunA17_Chr2g0328771 76.415 106 25 0 12 117 20 125 5.92e-57 188
Msa0526950 MtrunA17_Chr3g0088461 76.147 109 26 0 9 117 19 127 2.33e-56 187
Msa0526950 MtrunA17_Chr7g0274581 56.000 150 55 1 1 150 1 139 1.15e-55 181
Msa0526950 MtrunA17_Chr7g0261281 66.949 118 39 0 1 118 1 118 2.55e-54 180
Msa0526950 MtrunA17_Chr4g0044421 62.698 126 47 0 1 126 1 126 2.81e-54 177
Msa0526950 MtrunA17_Chr1g0203441 69.748 119 35 1 9 127 10 127 2.43e-53 177
Msa0526950 MtrunA17_Chr1g0187761 67.797 118 38 0 1 118 1 118 3.51e-53 176
Msa0526950 MtrunA17_Chr6g0470971 70.339 118 34 1 9 125 11 128 1.69e-52 176
Msa0526950 MtrunA17_Chr3g0121241 62.903 124 46 0 6 129 36 159 5.36e-52 175
Msa0526950 MtrunA17_Chr1g0167661 65.517 116 40 0 1 116 1 116 1.95e-51 172
Msa0526950 MtrunA17_Chr1g0167691 64.655 116 41 0 1 116 1 116 9.24e-51 170
Msa0526950 MtrunA17_Chr5g0417821 63.025 119 44 0 12 130 7 125 2.44e-50 170
Msa0526950 MtrunA17_Chr2g0311221 66.055 109 37 0 2 110 4 112 1.35e-49 169
Msa0526950 MtrunA17_Chr2g0323351 63.793 116 42 0 1 116 1 116 1.54e-49 167
Msa0526950 MtrunA17_Chr4g0022931 54.074 135 62 0 5 139 6 140 2.54e-49 167
Msa0526950 MtrunA17_Chr4g0070611 61.538 117 45 0 1 117 1 117 3.87e-49 167
Msa0526950 MtrunA17_Chr8g0342511 80.460 87 17 0 1 87 1 87 4.64e-49 160
Msa0526950 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 9.31e-49 166
Msa0526950 MtrunA17_Chr4g0070641 61.538 117 45 0 1 117 1 117 9.91e-49 162
Msa0526950 MtrunA17_Chr8g0342531 77.528 89 20 0 1 89 1 89 2.00e-48 161
Msa0526950 MtrunA17_Chr1g0151941 54.412 136 58 3 1 135 1 133 2.86e-48 164
Msa0526950 MtrunA17_Chr4g0022901 63.964 111 40 0 5 115 6 116 7.70e-48 163
Msa0526950 MtrunA17_Chr7g0275911 61.538 117 45 0 1 117 1 117 8.78e-48 162
Msa0526950 MtrunA17_Chr4g0068061 62.931 116 43 0 1 116 1 116 8.86e-48 165
Msa0526950 MtrunA17_Chr1g0152011 47.727 176 79 2 1 175 1 164 1.22e-47 164
Msa0526950 MtrunA17_Chr1g0194951 62.931 116 43 0 1 116 1 116 5.94e-46 161
Msa0526950 MtrunA17_Chr4g0028311 57.812 128 53 1 1 127 1 128 6.50e-46 159
Msa0526950 MtrunA17_Chr4g0022911 58.621 116 47 1 1 115 1 116 8.71e-46 158
Msa0526950 MtrunA17_Chr5g0400821 40.826 218 106 3 1 217 1 196 1.14e-45 159
Msa0526950 MtrunA17_Chr3g0135311 59.167 120 48 1 1 119 1 120 3.04e-45 158
Msa0526950 MtrunA17_Chr7g0217221 57.627 118 50 0 1 118 1 118 3.20e-45 156
Msa0526950 MtrunA17_Chr8g0342461 75.556 90 21 1 1 89 1 90 8.66e-45 151
Msa0526950 MtrunA17_Chr4g0060721 45.833 168 88 2 1 165 2 169 2.14e-44 156
Msa0526950 MtrunA17_Chr8g0342471 74.444 90 22 1 1 89 1 90 2.80e-44 149
Msa0526950 MtrunA17_Chr2g0327351 62.162 111 41 1 1 110 1 111 9.44e-44 154
Msa0526950 MtrunA17_Chr4g0054391 61.818 110 41 1 1 109 1 110 2.42e-43 152
Msa0526950 MtrunA17_Chr4g0022881 55.556 135 50 2 9 136 9 140 2.73e-43 150
Msa0526950 MtrunA17_Chr7g0254411 55.200 125 54 1 1 123 1 125 3.97e-43 152
Msa0526950 MtrunA17_Chr7g0264641 57.265 117 49 1 1 116 1 117 7.87e-43 150
Msa0526950 MtrunA17_Chr3g0092401 56.780 118 51 0 1 118 2 119 9.08e-43 151
Msa0526950 MtrunA17_Chr7g0269831 56.835 139 59 1 1 138 1 139 2.20e-42 151
Msa0526950 MtrunA17_Chr7g0247131 68.539 89 28 0 44 132 10 98 4.02e-42 148
Msa0526950 MtrunA17_Chr7g0228231 55.833 120 51 1 1 118 1 120 6.61e-42 145
Msa0526950 MtrunA17_Chr4g0022891 53.030 132 58 1 9 136 9 140 7.02e-42 147
Msa0526950 MtrunA17_Chr3g0099131 59.813 107 43 0 12 118 41 147 9.33e-42 153
Msa0526950 MtrunA17_Chr6g0487491 56.452 124 45 2 1 115 1 124 2.39e-41 146
Msa0526950 MtrunA17_Chr1g0209661 52.033 123 59 0 11 133 26 148 2.51e-41 147
Msa0526950 MtrunA17_Chr6g0450101 58.333 108 45 0 11 118 13 120 2.75e-41 144
Msa0526950 MtrunA17_Chr1g0154031 62.264 106 40 0 12 117 76 181 3.32e-41 149
Msa0526950 MtrunA17_Chr8g0354661 61.321 106 41 0 12 117 37 142 3.62e-41 152
Msa0526950 MtrunA17_Chr4g0055981 61.682 107 41 0 9 115 52 158 4.07e-41 144
Msa0526950 MtrunA17_Chr6g0453211 57.273 110 47 0 1 110 1 110 4.45e-41 147
Msa0526950 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 7.46e-41 147
Msa0526950 MtrunA17_Chr1g0186061 57.658 111 47 0 5 115 13 123 3.56e-40 142
Msa0526950 MtrunA17_Chr8g0343831 57.273 110 47 0 10 119 6 115 5.45e-40 142
Msa0526950 MtrunA17_Chr3g0080861 57.547 106 45 0 12 117 37 142 6.80e-40 148
Msa0526950 MtrunA17_Chr1g0168661 55.263 114 51 0 4 117 13 126 8.84e-40 141
Msa0526950 MtrunA17_Chr1g0180391 54.400 125 50 2 12 135 19 137 3.03e-39 139
Msa0526950 MtrunA17_Chr1g0194301 54.955 111 50 0 12 122 33 143 1.17e-38 139
Msa0526950 MtrunA17_Chr5g0434831 59.048 105 43 0 12 116 7 111 1.40e-38 136
Msa0526950 MtrunA17_Chr1g0194291 53.719 121 55 1 12 132 21 140 4.31e-38 137
Msa0526950 MtrunA17_Chr5g0434931 53.636 110 51 0 12 121 35 144 7.92e-38 137
Msa0526950 MtrunA17_Chr5g0434911 54.545 110 50 0 7 116 16 125 8.98e-38 137
Msa0526950 MtrunA17_Chr7g0240821 60.000 100 40 0 17 116 6 105 1.30e-37 135
Msa0526950 MtrunA17_Chr4g0042611 62.500 88 33 0 1 88 1 88 1.77e-37 130
Msa0526950 MtrunA17_Chr2g0322521 59.434 106 43 0 12 117 29 134 1.54e-36 136
Msa0526950 MtrunA17_Chr2g0327821 52.252 111 53 0 9 119 3 113 4.00e-36 131
Msa0526950 MtrunA17_Chr7g0220341 54.545 110 48 1 12 119 25 134 5.43e-36 132
Msa0526950 MtrunA17_Chr5g0434841 56.190 105 46 0 12 116 20 124 5.52e-36 133
Msa0526950 MtrunA17_Chr8g0360111 57.426 101 43 0 12 112 25 125 1.02e-35 131
Msa0526950 MtrunA17_Chr7g0228991 54.206 107 49 0 10 116 27 133 1.94e-35 130
Msa0526950 MtrunA17_Chr1g0192411 43.333 180 94 5 11 186 11 186 2.57e-35 133
Msa0526950 MtrunA17_Chr5g0440781 44.595 148 71 4 13 159 13 150 4.66e-35 127
Msa0526950 MtrunA17_Chr8g0334881 54.545 110 49 1 9 117 7 116 5.72e-35 130
Msa0526950 MtrunA17_Chr4g0030881 52.632 114 47 1 13 119 8 121 1.31e-34 128
Msa0526950 MtrunA17_Chr5g0441141 44.595 148 71 4 13 159 13 150 1.79e-34 128
Msa0526950 MtrunA17_Chr5g0440761 44.595 148 71 4 13 159 13 150 1.94e-34 127
Msa0526950 MtrunA17_Chr2g0294811 60.227 88 35 0 1 88 1 88 1.98e-34 123
Msa0526950 MtrunA17_Chr2g0293911 55.856 111 49 0 12 122 24 134 6.21e-34 128
Msa0526950 MtrunA17_Chr4g0068921 54.955 111 50 0 12 122 24 134 1.43e-33 123
Msa0526950 MtrunA17_Chr4g0013361 55.140 107 47 1 12 117 10 116 3.93e-33 125
Msa0526950 MtrunA17_Chr5g0395221 67.500 80 26 0 9 88 9 88 4.87e-33 118
Msa0526950 MtrunA17_Chr2g0323321 60.465 86 34 0 7 92 6 91 5.93e-32 116
Msa0526950 MtrunA17_Chr5g0441131 49.558 113 55 2 13 124 10 121 1.61e-31 117
Msa0526950 MtrunA17_Chr3g0099141 56.627 83 36 0 12 94 40 122 9.48e-31 114
Msa0526950 MtrunA17_Chr3g0093811 58.427 89 37 0 44 132 14 102 1.87e-30 117
Msa0526950 MtrunA17_Chr4g0053431 53.922 102 46 1 14 115 5 105 1.40e-28 112
Msa0526950 MtrunA17_Chr7g0238631 39.791 191 103 5 11 196 110 293 2.38e-28 116
Msa0526950 MtrunA17_Chr4g0008551 48.673 113 53 2 14 126 38 145 3.11e-28 113
Msa0526950 MtrunA17_Chr5g0401731 49.138 116 58 1 14 129 15 129 2.18e-27 110
Msa0526950 MtrunA17_Chr5g0429661 44.231 104 57 1 12 115 120 222 6.22e-27 109
Msa0526950 MtrunA17_Chr6g0454921 39.053 169 102 1 14 182 15 182 1.52e-26 105
Msa0526950 MtrunA17_Chr3g0139671 48.113 106 54 1 11 116 82 186 9.86e-26 108
Msa0526950 MtrunA17_Chr7g0229101 60.000 70 28 0 44 113 4 73 7.79e-25 100
Msa0526950 MtrunA17_Chr6g0480581 43.396 106 59 1 14 119 4 108 8.08e-25 101
Msa0526950 MtrunA17_Chr6g0453751 53.763 93 34 2 12 95 20 112 1.42e-24 97.4
Msa0526950 MtrunA17_Chr5g0434901 60.294 68 27 0 46 113 7 74 2.47e-24 96.3
Msa0526950 MtrunA17_Chr1g0157731 47.170 106 55 1 11 116 88 192 2.72e-24 104
Msa0526950 MtrunA17_Chr7g0229131 56.164 73 32 0 44 116 4 76 3.57e-24 97.8
Msa0526950 MtrunA17_Chr4g0058991 41.964 112 62 2 9 119 204 313 5.64e-24 102
Msa0526950 MtrunA17_Chr3g0117511 42.593 108 60 2 14 120 183 289 7.06e-24 102
Msa0526950 MtrunA17_Chr4g0042501 42.453 106 60 1 14 119 105 209 8.46e-24 102
Msa0526950 MtrunA17_Chr5g0417621 41.284 109 63 1 11 119 131 238 9.84e-24 102
Msa0526950 MtrunA17_Chr3g0133601 48.039 102 52 1 14 115 37 137 1.16e-23 97.8
Msa0526950 MtrunA17_Chr6g0460661 41.509 106 59 2 14 118 16 119 5.41e-23 94.4
Msa0526950 MtrunA17_Chr7g0228401 30.435 184 116 4 25 200 290 469 1.21e-22 99.4
Msa0526950 MtrunA17_Chr5g0437321 48.485 99 50 1 14 112 19 116 1.44e-22 96.3
Msa0526950 MtrunA17_Chr3g0125801 44.860 107 56 2 14 119 16 120 1.52e-22 96.3
Msa0526950 MtrunA17_Chr7g0228531 42.991 107 56 3 14 120 220 321 3.75e-22 97.1
Msa0526950 MtrunA17_Chr1g0177901 32.065 184 106 5 33 208 13 185 4.00e-22 93.2
Msa0526950 MtrunA17_Chr5g0425591 48.810 84 42 1 13 95 10 93 4.17e-22 89.7
Msa0526950 MtrunA17_Chr6g0460671 41.905 105 60 1 14 118 99 202 4.82e-22 95.9
Msa0526950 MtrunA17_Chr5g0397841 45.918 98 52 1 12 109 108 204 1.76e-21 95.5
Msa0526950 MtrunA17_Chr7g0254261 34.437 151 97 2 8 158 83 231 1.33e-20 92.0
Msa0526950 MtrunA17_Chr7g0228481 39.091 110 62 3 14 120 220 327 3.50e-20 91.3
Msa0526950 MtrunA17_Chr7g0238651 37.069 116 65 2 17 124 10 125 2.08e-19 88.6
Msa0526950 MtrunA17_Chr7g0233061 39.623 106 60 4 14 119 180 281 1.56e-17 83.2
Msa0526950 MtrunA17_Chr5g0416341 35.238 105 67 1 17 121 29 132 6.71e-17 82.0
Msa0526950 MtrunA17_Chr5g0395231 44.118 102 52 2 78 179 5 101 3.72e-16 77.4
Msa0526950 MtrunA17_Chr1g0193901 50.562 89 42 2 10 96 9 97 8.41e-16 72.8
Msa0526950 MtrunA17_Chr1g0193891 50.562 89 42 2 10 96 9 97 8.41e-16 72.8
Msa0526950 MtrunA17_Chr1g0193871 50.562 89 42 2 10 96 9 97 8.41e-16 72.8
Msa0526950 MtrunA17_Chr1g0193881 50.562 89 42 2 10 96 9 97 8.41e-16 72.8
Msa0526950 MtrunA17_Chr8g0362231 34.211 114 73 2 17 130 25 136 1.88e-15 77.4
Msa0526950 MtrunA17_Chr4g0042621 69.565 46 13 1 84 128 9 54 1.20e-12 68.2
Msa0526950 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 2.08e-12 62.0
Msa0526950 MtrunA17_Chr3g0104491 37.931 87 47 3 53 132 1 87 3.02e-12 66.6
Msa0526950 MtrunA17_Chr3g0145551 65.000 40 14 0 92 131 2 41 7.29e-12 60.8
Msa0526950 MtrunA17_Chr7g0233151 27.673 159 92 6 65 207 1 152 6.59e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526950 AT4G01680.3 81.290 155 29 0 1 155 1 155 1.08e-91 275
Msa0526950 AT4G01680.1 81.290 155 29 0 1 155 1 155 5.09e-91 277
Msa0526950 AT4G01680.2 75.449 167 29 1 1 155 1 167 1.36e-87 268
Msa0526950 AT1G09540.1 44.504 373 126 11 1 341 1 324 3.35e-87 268
Msa0526950 AT1G57560.1 88.636 132 15 0 1 132 1 132 1.14e-86 265
Msa0526950 AT1G57560.2 87.970 133 16 0 1 133 1 133 6.69e-86 261
Msa0526950 AT5G26660.1 79.730 148 28 1 1 146 1 148 3.49e-85 262
Msa0526950 AT3G13890.2 80.172 116 23 0 1 116 1 116 2.39e-67 217
Msa0526950 AT3G12720.1 71.429 126 35 1 1 126 12 136 8.43e-66 211
Msa0526950 AT3G02940.2 67.407 135 44 0 1 135 1 135 3.49e-65 209
Msa0526950 AT3G02940.1 67.407 135 44 0 1 135 1 135 9.86e-65 209
Msa0526950 AT3G02940.3 67.407 135 44 0 1 135 1 135 9.86e-65 209
Msa0526950 AT3G13890.1 74.400 125 23 1 1 116 1 125 3.57e-64 209
Msa0526950 AT5G16770.4 66.667 135 45 0 1 135 1 135 4.23e-64 207
Msa0526950 AT5G16770.3 66.667 135 45 0 1 135 1 135 4.23e-64 207
Msa0526950 AT5G16770.1 66.667 135 45 0 1 135 1 135 1.15e-63 206
Msa0526950 AT5G16770.2 66.667 135 45 0 1 135 1 135 1.15e-63 206
Msa0526950 AT4G34990.1 58.278 151 63 0 1 151 1 151 1.23e-62 202
Msa0526950 AT1G63910.1 68.750 128 40 0 1 128 1 128 1.80e-62 204
Msa0526950 AT3G61250.1 68.217 129 41 0 1 129 1 129 1.97e-62 202
Msa0526950 AT1G66230.1 67.391 138 45 0 1 138 1 138 1.05e-61 200
Msa0526950 AT2G16720.1 56.410 156 68 0 1 156 1 156 2.88e-61 198
Msa0526950 AT4G21440.1 38.941 321 144 8 1 290 1 300 5.77e-61 200
Msa0526950 AT4G12350.1 52.632 171 81 0 1 171 1 171 2.92e-60 196
Msa0526950 AT5G15310.1 65.909 132 45 0 1 132 1 132 3.31e-60 197
Msa0526950 AT1G34670.1 65.152 132 46 0 1 132 1 132 3.84e-60 198
Msa0526950 AT5G15310.2 65.909 132 45 0 1 132 1 132 3.97e-60 197
Msa0526950 AT5G16600.1 63.194 144 53 0 1 144 1 144 4.26e-60 197
Msa0526950 AT4G38620.1 64.122 131 47 0 1 131 1 131 5.34e-60 195
Msa0526950 AT5G15310.4 65.909 132 45 0 1 132 1 132 6.06e-60 194
Msa0526950 AT4G05100.1 65.891 129 43 1 1 128 1 129 1.38e-59 196
Msa0526950 AT3G01140.2 65.909 132 45 0 1 132 1 132 1.90e-59 196
Msa0526950 AT5G10280.1 63.636 132 48 0 1 132 1 132 2.16e-59 195
Msa0526950 AT1G22640.1 63.359 131 48 0 1 131 1 131 4.52e-59 192
Msa0526950 AT5G56110.1 65.152 132 46 0 1 132 1 132 6.03e-59 194
Msa0526950 AT4G28110.1 64.844 128 45 0 1 128 1 128 6.22e-59 192
Msa0526950 AT4G09460.1 60.145 138 55 0 1 138 1 138 7.63e-59 191
Msa0526950 AT4G22680.1 63.504 137 49 1 1 136 1 137 8.06e-59 192
Msa0526950 AT5G65230.1 64.885 131 46 0 1 131 1 131 1.48e-58 192
Msa0526950 AT5G07690.1 60.000 140 56 0 1 140 1 140 3.56e-57 190
Msa0526950 AT5G60890.1 59.690 129 52 0 1 129 1 129 9.95e-57 187
Msa0526950 AT3G01140.1 66.142 127 43 0 6 132 49 175 1.27e-56 190
Msa0526950 AT5G61420.2 59.712 139 54 1 1 137 1 139 1.88e-56 189
Msa0526950 AT5G14340.1 51.412 177 79 3 1 176 13 183 9.36e-56 184
Msa0526950 AT4G17785.2 63.566 129 46 1 1 128 1 129 1.04e-55 186
Msa0526950 AT4G17785.1 63.566 129 46 1 1 128 1 129 1.06e-55 186
Msa0526950 AT1G35515.1 60.305 131 52 0 1 131 1 131 1.48e-55 181
Msa0526950 AT5G12870.1 73.394 109 29 0 10 118 16 124 1.61e-55 184
Msa0526950 AT2G31180.1 45.685 197 107 0 1 197 1 197 7.73e-55 181
Msa0526950 AT3G13540.1 57.746 142 59 1 6 147 17 157 1.21e-54 180
Msa0526950 AT1G74430.1 62.500 128 48 0 1 128 1 128 2.37e-54 180
Msa0526950 AT3G08500.1 70.085 117 32 1 4 117 19 135 2.45e-54 182
Msa0526950 AT1G18570.1 51.829 164 66 2 1 163 1 152 3.82e-54 182
Msa0526950 AT5G54230.1 63.281 128 47 0 1 128 1 128 8.10e-54 181
Msa0526950 AT3G23250.1 46.829 205 83 4 1 192 1 192 8.31e-54 179
Msa0526950 AT3G28470.1 62.879 132 49 0 1 132 1 132 1.32e-53 180
Msa0526950 AT1G74080.1 51.266 158 75 1 1 158 1 156 3.16e-53 179
Msa0526950 AT5G07700.1 59.231 130 53 0 1 130 1 130 3.41e-53 179
Msa0526950 AT5G07700.2 59.231 130 53 0 1 130 1 130 3.41e-53 179
Msa0526950 AT1G79180.1 67.521 117 38 0 2 118 4 120 7.94e-53 177
Msa0526950 AT5G26660.2 73.394 109 27 1 40 146 9 117 4.62e-52 176
Msa0526950 AT5G62320.1 57.241 145 54 2 2 139 3 146 7.68e-52 173
Msa0526950 AT1G06180.1 65.254 118 41 0 1 118 1 118 1.49e-51 172
Msa0526950 AT3G48920.1 68.468 111 35 0 9 119 15 125 1.64e-51 172
Msa0526950 AT1G16490.1 66.087 115 39 0 2 116 4 118 1.20e-50 171
Msa0526950 AT1G18710.1 57.364 129 55 0 1 129 1 129 6.86e-50 169
Msa0526950 AT1G56160.1 65.217 115 40 0 2 116 4 118 9.32e-50 169
Msa0526950 AT4G25560.1 70.370 108 32 0 8 115 6 113 2.91e-48 165
Msa0526950 AT2G47460.1 59.091 132 54 0 1 132 1 132 7.17e-48 166
Msa0526950 AT5G23000.1 62.393 117 43 1 1 116 1 117 1.40e-47 164
Msa0526950 AT5G57620.1 60.800 125 46 2 1 122 1 125 4.03e-47 163
Msa0526950 AT5G49330.1 63.793 116 42 0 1 116 1 116 5.35e-47 163
Msa0526950 AT3G62610.1 62.931 116 43 0 1 116 1 116 5.43e-47 163
Msa0526950 AT5G52260.1 71.028 107 31 0 9 115 9 115 1.59e-46 160
Msa0526950 AT3G12820.1 61.538 117 45 0 3 119 5 121 2.71e-46 158
Msa0526950 AT3G49690.1 61.667 120 45 1 1 119 1 120 5.57e-46 160
Msa0526950 AT1G79180.2 52.667 150 38 1 2 118 4 153 6.61e-46 160
Msa0526950 AT5G65790.1 60.833 120 46 1 1 119 1 120 6.82e-46 161
Msa0526950 AT3G47600.1 57.627 118 50 0 1 118 1 118 8.99e-45 157
Msa0526950 AT1G74650.1 60.345 116 46 0 1 116 1 116 1.02e-44 157
Msa0526950 AT5G06100.1 46.951 164 84 2 10 173 30 190 2.95e-44 159
Msa0526950 AT5G62470.2 57.627 118 50 0 1 118 1 118 3.73e-44 156
Msa0526950 AT5G35550.1 40.083 242 126 7 9 241 11 242 5.67e-44 153
Msa0526950 AT2G36890.1 55.906 127 55 1 1 126 1 127 5.87e-44 154
Msa0526950 AT1G08810.1 45.349 172 77 1 1 172 1 155 6.67e-44 153
Msa0526950 AT2G36890.2 55.906 127 55 1 1 126 42 168 8.75e-44 155
Msa0526950 AT5G06100.5 46.951 164 84 2 10 173 30 190 1.13e-43 158
Msa0526950 AT5G06100.2 46.951 164 84 2 10 173 30 190 1.13e-43 158
Msa0526950 AT5G06100.3 46.951 164 84 2 10 173 30 190 1.13e-43 158
Msa0526950 AT5G06100.4 46.951 164 84 2 10 173 30 190 1.13e-43 158
Msa0526950 AT4G37780.1 58.333 120 49 1 1 119 1 120 2.81e-43 152
Msa0526950 AT5G14750.1 58.654 104 43 0 13 116 17 120 4.40e-43 149
Msa0526950 AT5G62470.1 57.627 118 49 1 1 118 1 117 2.35e-42 151
Msa0526950 AT3G01530.1 54.310 116 53 0 12 127 25 140 2.71e-42 147
Msa0526950 AT3G27810.1 55.856 111 49 0 11 121 19 129 3.44e-42 147
Msa0526950 AT5G40330.1 57.692 104 44 0 13 116 13 116 4.10e-42 147
Msa0526950 AT3G28910.1 56.897 116 50 0 1 116 1 116 1.01e-41 149
Msa0526950 AT3G27920.1 55.140 107 48 0 10 116 12 118 1.88e-41 145
Msa0526950 AT2G26960.1 42.775 173 85 3 9 168 17 188 2.75e-41 150
Msa0526950 AT4G26930.1 61.682 107 41 0 12 118 19 125 2.77e-41 149
Msa0526950 AT5G40350.1 56.364 110 48 0 11 120 16 125 5.59e-41 144
Msa0526950 AT5G52600.1 49.254 134 59 1 9 133 9 142 6.15e-41 143
Msa0526950 AT3G11440.2 51.880 133 61 2 12 144 41 170 7.65e-41 150
Msa0526950 AT5G55020.1 60.748 107 42 0 12 118 26 132 8.60e-41 150
Msa0526950 AT3G11440.3 50.735 136 64 2 9 144 38 170 2.12e-40 150
Msa0526950 AT3G11440.4 50.735 136 64 2 9 144 38 170 2.12e-40 150
Msa0526950 AT3G11440.1 50.735 136 64 2 9 144 38 170 2.12e-40 150
Msa0526950 AT1G25340.1 54.167 120 55 0 13 132 19 138 1.43e-39 142
Msa0526950 AT2G32460.1 49.618 131 65 1 10 140 16 145 1.65e-39 147
Msa0526950 AT2G32460.2 49.618 131 65 1 10 140 4 133 1.99e-39 146
Msa0526950 AT1G68320.1 52.381 126 60 0 10 135 17 142 3.69e-39 141
Msa0526950 AT3G30210.1 47.651 149 76 2 13 159 28 176 4.24e-39 140
Msa0526950 AT4G13480.1 60.952 105 41 0 13 117 7 111 5.34e-39 140
Msa0526950 AT3G24310.1 60.000 105 42 0 13 117 19 123 7.27e-39 140
Msa0526950 AT1G48000.1 57.692 104 44 0 11 114 31 134 5.04e-38 137
Msa0526950 AT1G66370.1 48.921 139 65 2 12 144 8 146 3.08e-37 135
Msa0526950 AT2G47190.1 51.351 111 54 0 12 122 20 130 1.08e-36 134
Msa0526950 AT5G59780.3 53.153 111 52 0 9 119 5 115 2.99e-36 132
Msa0526950 AT3G53200.1 56.075 107 47 0 9 115 6 112 9.92e-36 130
Msa0526950 AT3G60460.1 52.101 119 50 2 9 126 8 120 1.40e-35 132
Msa0526950 AT3G46130.1 54.206 107 49 0 13 119 10 116 1.48e-35 130
Msa0526950 AT2G26950.1 48.696 115 56 1 6 120 10 121 1.93e-35 134
Msa0526950 AT1G25340.2 51.667 120 53 1 13 132 19 133 9.20e-35 129
Msa0526950 AT3G06490.1 58.559 111 46 0 12 122 19 129 1.34e-34 130
Msa0526950 AT1G25340.3 51.667 120 53 1 13 132 19 133 2.25e-34 129
Msa0526950 AT1G66380.1 60.577 104 41 0 12 115 8 111 3.06e-34 124
Msa0526950 AT1G56650.1 52.000 125 52 1 12 128 8 132 3.47e-34 127
Msa0526950 AT5G49620.1 54.955 111 50 0 12 122 26 136 2.24e-32 124
Msa0526950 AT1G66390.1 58.491 106 44 0 10 115 6 111 2.30e-32 122
Msa0526950 AT5G35550.2 39.806 206 105 7 45 241 50 245 2.31e-31 120
Msa0526950 AT3G12820.2 69.444 72 22 0 48 119 2 73 9.43e-31 116
Msa0526950 AT3G27810.2 59.740 77 31 0 45 121 4 80 7.93e-30 113
Msa0526950 AT5G14750.3 63.636 77 25 1 40 116 13 86 8.19e-30 113
Msa0526950 AT5G49620.2 48.800 125 50 1 12 122 26 150 8.57e-29 114
Msa0526950 AT1G22640.3 64.865 74 26 0 58 131 1 74 1.00e-28 111
Msa0526950 AT5G40350.2 60.526 76 30 0 45 120 5 80 2.49e-28 109
Msa0526950 AT3G46130.3 61.842 76 29 0 44 119 9 84 3.88e-28 110
Msa0526950 AT3G47600.2 53.125 96 41 1 23 118 21 112 3.94e-28 112
Msa0526950 AT3G46130.4 61.039 77 30 0 43 119 18 94 7.26e-28 109
Msa0526950 AT5G59780.2 61.039 77 30 0 43 119 18 94 7.65e-28 109
Msa0526950 AT3G53200.2 63.158 76 28 0 40 115 4 79 7.92e-28 108
Msa0526950 AT1G18960.1 45.455 121 59 4 14 132 10 125 7.93e-28 111
Msa0526950 AT4G18770.1 45.946 111 59 1 9 119 212 321 1.77e-27 112
Msa0526950 AT3G27785.1 44.167 120 62 3 9 125 184 301 4.49e-26 108
Msa0526950 AT5G67300.1 50.980 102 49 1 14 115 6 106 7.14e-26 106
Msa0526950 AT5G02320.1 48.571 105 53 1 12 116 125 228 1.72e-25 108
Msa0526950 AT5G02320.2 48.571 105 53 1 12 116 125 228 1.72e-25 108
Msa0526950 AT4G37260.1 50.467 107 52 1 14 120 13 118 1.76e-25 105
Msa0526950 AT5G02320.3 48.571 105 53 1 12 116 65 168 1.77e-25 107
Msa0526950 AT1G71030.2 55.844 77 34 0 51 127 5 81 2.01e-25 101
Msa0526950 AT3G09370.1 50.000 104 51 1 12 115 128 230 2.01e-25 107
Msa0526950 AT3G09370.2 50.000 104 51 1 12 115 133 235 2.15e-25 107
Msa0526950 AT5G40360.1 42.453 106 60 1 9 114 153 257 2.45e-25 105
Msa0526950 AT1G71030.1 55.844 77 34 0 51 127 19 95 2.57e-25 102
Msa0526950 AT3G09370.3 50.000 104 51 1 12 115 141 243 3.32e-25 107
Msa0526950 AT3G50060.1 40.127 157 89 3 14 170 6 157 3.86e-25 103
Msa0526950 AT2G39880.1 53.398 103 45 2 14 115 50 150 5.00e-25 105
Msa0526950 AT3G55730.1 53.398 103 45 2 14 115 56 156 7.76e-25 104
Msa0526950 AT5G58850.1 38.760 129 73 2 10 138 101 223 7.87e-25 105
Msa0526950 AT1G17950.1 42.453 106 60 1 14 119 5 109 1.68e-24 101
Msa0526950 AT1G69560.1 41.964 112 62 2 9 119 102 211 1.83e-24 102
Msa0526950 AT3G09230.1 47.573 103 53 1 14 116 55 156 1.87e-24 103
Msa0526950 AT1G69560.2 41.964 112 62 2 9 119 118 227 2.32e-24 102
Msa0526950 AT5G11510.3 47.170 106 55 1 11 116 78 182 2.49e-24 105
Msa0526950 AT5G11510.1 47.170 106 55 1 11 116 78 182 2.49e-24 105
Msa0526950 AT5G11510.4 47.170 106 55 1 11 116 78 182 2.49e-24 105
Msa0526950 AT5G11050.1 42.157 102 58 1 14 115 105 205 2.60e-24 103
Msa0526950 AT2G23290.1 50.980 102 49 1 14 115 13 113 2.74e-24 102
Msa0526950 AT3G23250.2 41.892 148 60 4 58 192 1 135 2.93e-24 99.8
Msa0526950 AT5G11510.2 47.170 106 55 1 11 116 78 182 3.77e-24 104
Msa0526950 AT5G11510.5 47.170 106 55 1 11 116 78 182 3.99e-24 104
Msa0526950 AT4G32730.5 46.226 106 56 1 11 116 84 188 1.14e-23 103
Msa0526950 AT4G32730.4 46.226 106 56 1 11 116 84 188 1.14e-23 103
Msa0526950 AT4G32730.3 46.226 106 56 1 11 116 84 188 1.14e-23 103
Msa0526950 AT4G32730.2 46.226 106 56 1 11 116 84 188 1.14e-23 103
Msa0526950 AT4G32730.1 46.226 106 56 1 11 116 84 188 1.27e-23 103
Msa0526950 AT1G26780.1 43.519 108 58 2 12 118 96 201 1.72e-23 99.0
Msa0526950 AT1G26780.2 43.519 108 58 2 12 118 96 201 1.85e-23 100
Msa0526950 AT1G73410.1 46.226 106 54 2 14 118 6 109 1.94e-23 98.2
Msa0526950 AT1G73410.2 46.226 106 54 2 14 118 6 109 5.74e-23 95.9
Msa0526950 AT1G66380.3 63.380 71 26 0 45 115 8 78 1.39e-22 91.7
Msa0526950 AT2G25230.1 39.837 123 71 2 9 129 21 142 2.41e-22 94.7
Msa0526950 AT1G66380.2 55.422 83 37 0 10 92 6 88 6.95e-22 90.1
Msa0526950 AT4G33450.1 37.190 121 72 2 1 118 3 122 8.10e-22 93.6
Msa0526950 AT3G29020.2 39.623 106 63 1 14 119 67 171 1.58e-21 94.0
Msa0526950 AT3G29020.1 39.623 106 63 1 14 119 65 169 1.91e-21 92.4
Msa0526950 AT5G17800.1 39.048 105 63 1 14 118 93 196 2.17e-21 94.0
Msa0526950 AT5G14750.4 62.712 59 22 0 58 116 1 59 5.31e-21 88.6
Msa0526950 AT5G14750.2 62.712 59 22 0 58 116 1 59 5.31e-21 88.6
Msa0526950 AT2G02820.3 37.815 119 72 2 4 121 19 136 3.49e-19 87.8
Msa0526950 AT2G02820.1 37.815 119 72 2 4 121 19 136 3.60e-19 89.0
Msa0526950 AT2G02820.2 37.815 119 72 2 4 121 19 136 4.56e-19 89.0
Msa0526950 AT4G00540.2 41.818 110 60 2 12 118 101 209 1.19e-18 87.0
Msa0526950 AT5G40430.1 38.393 112 67 2 9 120 49 158 1.90e-18 84.3
Msa0526950 AT4G00540.1 41.818 110 60 2 12 118 99 207 2.19e-18 86.7
Msa0526950 AT1G14350.2 39.048 105 63 1 17 121 28 131 5.09e-18 85.5
Msa0526950 AT1G14350.1 39.048 105 63 1 17 121 28 131 5.09e-18 85.5
Msa0526950 AT5G61420.1 64.407 59 19 1 81 137 2 60 2.02e-17 82.0
Msa0526950 AT2G37630.1 36.522 115 66 2 17 124 7 121 3.02e-17 82.8
Msa0526950 AT5G39700.1 33.621 116 76 1 9 124 51 165 3.84e-16 76.6
Msa0526950 AT1G74430.2 59.615 52 21 0 77 128 8 59 3.87e-15 73.9
Msa0526950 AT4G28110.2 70.732 41 12 0 88 128 4 44 2.49e-14 71.6
Msa0526950 AT5G15310.3 68.889 45 14 0 88 132 9 53 1.10e-13 70.5
Msa0526950 AT5G59780.1 59.574 47 19 0 73 119 4 50 2.86e-13 67.8
Msa0526950 AT3G46130.2 59.574 47 19 0 73 119 4 50 3.63e-13 68.2
Msa0526950 AT4G25560.2 71.111 45 13 0 71 115 3 47 4.01e-13 68.6
Msa0526950 AT5G14340.2 39.535 86 45 3 88 172 10 89 7.69e-13 67.0
Msa0526950 AT1G14350.3 43.939 66 37 0 56 121 23 88 3.01e-12 67.8
Msa0526950 AT1G14350.4 43.939 66 37 0 56 121 23 88 3.01e-12 67.8
Msa0526950 AT1G22640.2 61.364 44 17 0 88 131 16 59 4.77e-12 64.7
Msa0526950 AT3G18100.1 36.458 96 60 1 13 108 545 639 1.83e-11 66.2
Msa0526950 AT3G18100.4 36.458 96 60 1 13 108 384 478 2.12e-11 65.9
Msa0526950 AT3G18100.2 36.458 96 60 1 13 108 332 426 2.64e-11 65.5
Msa0526950 AT3G18100.3 36.458 96 60 1 13 108 497 591 2.66e-11 65.5

Find 105 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAGAGTTTGGATTATT+TGG 0.116986 3_4:+81104450 None:intergenic
GATTTAGGCCCTGATGGTTT+AGG 0.252849 3_4:-81104075 Msa0526950:CDS
TTTCCCTTTATTAATTTCTA+AGG 0.253974 3_4:-81103835 Msa0526950:three_prime_UTR
TTGAATCATATTACTAAATA+TGG 0.254773 3_4:-81105340 Msa0526950:CDS
TCTTATAATATAGCAGCTTT+TGG 0.280061 3_4:-81104012 Msa0526950:CDS
AACTACTAACAAACTACAAA+TGG 0.300202 3_4:-81105434 Msa0526950:exon
GATAAGATACTATTCTTCAT+AGG 0.304611 3_4:+81104249 None:intergenic
TTTGTAGTTTGTTAGTAGTT+TGG 0.311975 3_4:+81105437 None:intergenic
ATTTAGGCCCTGATGGTTTA+GGG 0.313997 3_4:-81104074 Msa0526950:CDS
AGAATAGTATCTTATCTTCT+TGG 0.317415 3_4:-81104242 Msa0526950:CDS
AGTGAAACTAGTTATGGATA+TGG 0.320341 3_4:+81103717 None:intergenic
ATAAAGCCTGCCACAGATTT+AGG 0.320366 3_4:-81104090 Msa0526950:CDS
ATAATGAAATAAAGAATCTT+TGG 0.322110 3_4:-81104794 Msa0526950:CDS
AAAGGTGTGGTAAGAGTTGC+AGG 0.322879 3_4:-81105155 Msa0526950:CDS
ATATACAGAAACAAAATATT+TGG 0.325432 3_4:+81103911 None:intergenic
GAATAGTATCTTATCTTCTT+GGG 0.325673 3_4:-81104241 Msa0526950:CDS
CAGAAAGATTGTTGGATTTG+TGG 0.335677 3_4:+81105506 None:intergenic
TGAAGATTGTTTAGGCTCAT+AGG 0.335997 3_4:+81104581 None:intergenic
CACACCTTAGAAATTAATAA+AGG 0.340536 3_4:+81103831 None:intergenic
GTGGGTAGAATTGCAAAATA+AGG 0.343670 3_4:-81103811 Msa0526950:three_prime_UTR
TTGAACCAATGAGAAGAGTT+TGG 0.356074 3_4:+81104441 None:intergenic
CTGATAAACAGAAAGATTGT+TGG 0.356491 3_4:+81105498 None:intergenic
ATAGGAAACAGCATCTGATT+TGG 0.364879 3_4:+81104599 None:intergenic
GGAAGAAATGAGGTATTAGT+TGG 0.366998 3_4:+81104345 None:intergenic
CAAAGGTTATTCAACTGAAA+TGG 0.369898 3_4:-81104550 Msa0526950:CDS
AGGACAATTGAAGATTGTTT+AGG 0.372326 3_4:+81104573 None:intergenic
ATATTTCTGCTGCTTTCTCT+TGG 0.373195 3_4:+81104664 None:intergenic
TTCTTGTTCCAACTATTTGA+TGG 0.388346 3_4:-81104517 Msa0526950:CDS
ATTGAACTTCATTCAGTACT+AGG 0.389828 3_4:-81105060 Msa0526950:CDS
TCTCATTGGTTCAACCAAAC+AGG 0.390750 3_4:-81104432 Msa0526950:CDS
GATGTGTAATTCATCTGAAT+AGG 0.392658 3_4:+81104486 None:intergenic
GAGATTAGTCATTGCGATAA+TGG 0.397964 3_4:+81103636 None:intergenic
ATAATCCAAACTCTTCTCAT+TGG 0.399767 3_4:-81104446 Msa0526950:CDS
GTAATTTCCCATCAAATAGT+TGG 0.401184 3_4:+81104509 None:intergenic
TTGAGAAGATTCTTGTTGCT+TGG 0.413002 3_4:+81104035 None:intergenic
AAGTACTTTCTGATCTCATA+AGG 0.429540 3_4:+81104622 None:intergenic
CAAATTGCTGCACAATTGCC+AGG 0.435074 3_4:-81104825 Msa0526950:CDS
AAAGAAGAAACTGAGACAAA+AGG 0.438499 3_4:-81104760 Msa0526950:CDS
AATTCAGAGTTCATGTCAAA+AGG 0.443007 3_4:+81104402 None:intergenic
ATTATGTCCCCTAAACCATC+AGG 0.449694 3_4:+81104066 None:intergenic
ACACCTTAGAAATTAATAAA+GGG 0.458066 3_4:+81103832 None:intergenic
TTCATTCAGTACTAGGGAAT+AGG 0.458093 3_4:-81105053 Msa0526950:intron
GAAGAAATGAGGTATTAGTT+GGG 0.458948 3_4:+81104346 None:intergenic
CTTTATTAATTTCTAAGGTG+TGG 0.460445 3_4:-81103830 Msa0526950:three_prime_UTR
CATTGTATTTGTAAGTTTGA+GGG 0.460795 3_4:-81105461 Msa0526950:five_prime_UTR
TTTCAGTTGAATAACCTTTG+AGG 0.461827 3_4:+81104553 None:intergenic
GAAAGTGGTTTATGAGTGAC+AGG 0.465506 3_4:+81104729 None:intergenic
GTGGTAAGAGTTGCAGGCTT+AGG 0.466298 3_4:-81105149 Msa0526950:CDS
TGTTTGATTCTCTTTAATAG+AGG 0.466549 3_4:+81104200 None:intergenic
TCATTGTATTTGTAAGTTTG+AGG 0.467013 3_4:-81105462 Msa0526950:five_prime_UTR
AAGAAGAAACTGAGACAAAA+GGG 0.474216 3_4:-81104759 Msa0526950:CDS
CTAAATATGGTCATGGATGT+TGG 0.475014 3_4:-81105327 Msa0526950:CDS
GTTGCTACAAGCAGAAGCTT+AGG 0.481348 3_4:-81105399 Msa0526950:CDS
TAATATATACCTGCTTGCTT+AGG 0.482505 3_4:+81105295 None:intergenic
GCCACAGATTTAGGCCCTGA+TGG 0.492844 3_4:-81104081 Msa0526950:CDS
ACTACTAACAAACTACAAAT+GGG 0.496487 3_4:-81105433 Msa0526950:exon
TTTGTTTCAGTGATGCACTT+AGG 0.501827 3_4:-81103760 Msa0526950:three_prime_UTR
TCTTGTTCCAACTATTTGAT+GGG 0.507060 3_4:-81104516 Msa0526950:CDS
ATAAGATACTATTCTTCATA+GGG 0.510246 3_4:+81104250 None:intergenic
CAATAAACAAAGAGTGTGAC+AGG 0.510885 3_4:+81105531 None:intergenic
ATGTGTAATTCATCTGAATA+GGG 0.511653 3_4:+81104487 None:intergenic
TTTATTAATTTCTAAGGTGT+GGG 0.516023 3_4:-81103829 Msa0526950:three_prime_UTR
GGTAGAAAATGTTGATGAAG+AGG 0.516385 3_4:-81104703 Msa0526950:CDS
AGAAGCTTAGGAAAGGTCTA+TGG 0.519654 3_4:-81105387 Msa0526950:CDS
AAGAGACTGACATAAATGTT+TGG 0.520011 3_4:+81103878 None:intergenic
GTAAGAGTTGCAGGCTTAGG+TGG 0.530842 3_4:-81105146 Msa0526950:CDS
ACACACAATCTGAAATCCCT+TGG 0.536806 3_4:+81103944 None:intergenic
AAAAGTATTGGGAAGAAATG+AGG 0.537696 3_4:+81104335 None:intergenic
CAATCTTCAATTGTCCTCAA+AGG 0.538889 3_4:-81104567 Msa0526950:CDS
TCGCAATGACTAATCTCTAC+CGG 0.543942 3_4:-81103630 Msa0526950:three_prime_UTR
ATTTCATTATCAGTCCTCCC+TGG 0.548205 3_4:+81104807 None:intergenic
CATATTACTAAATATGGTCA+TGG 0.549148 3_4:-81105334 Msa0526950:CDS
TTGAACTTCATTCAGTACTA+GGG 0.552884 3_4:-81105059 Msa0526950:CDS
AGGTCTATGGTCACCTGAGG+AGG 0.556622 3_4:-81105374 Msa0526950:CDS
TTAGGTGGATTAATTACTTG+AGG 0.558206 3_4:-81105131 Msa0526950:CDS
TTATTCAACTGAAATGGAAG+TGG 0.560042 3_4:-81104544 Msa0526950:CDS
AATAGTATCTTATCTTCTTG+GGG 0.560835 3_4:-81104240 Msa0526950:CDS
TTATTGGCACAGGTCTTCAA+AGG 0.561994 3_4:-81105173 Msa0526950:intron
ATATTATGAAGTGTGAAAGA+TGG 0.565420 3_4:+81105618 None:intergenic
TCAGGGCCTAAATCTGTGGC+AGG 0.565813 3_4:+81104084 None:intergenic
TCAACTGAAATGGAAGTGGA+AGG 0.579991 3_4:-81104540 Msa0526950:CDS
GTGAAGATACTCATTCCACT+TGG 0.581545 3_4:+81104164 None:intergenic
AGTTCAGTTCCTAAGCAAGC+AGG 0.581863 3_4:-81105304 Msa0526950:intron
TTTAGGCCCTGATGGTTTAG+GGG 0.584861 3_4:-81104073 Msa0526950:CDS
CACTCATAAACCACTTTCTG+AGG 0.586110 3_4:-81104724 Msa0526950:CDS
GACATAGAAACATCTTGTGA+AGG 0.586534 3_4:+81104285 None:intergenic
ATTATTTGGAATATTATCAG+TGG 0.586790 3_4:+81104464 None:intergenic
AAGAAATGAGGTATTAGTTG+GGG 0.597506 3_4:+81104347 None:intergenic
CAGAAGAAGAAGAAGCCAAG+TGG 0.603165 3_4:-81104179 Msa0526950:CDS
GAAGGAACATCAGCAAGTGA+TGG 0.610340 3_4:+81104303 None:intergenic
ACCATCAGGGCCTAAATCTG+TGG 0.616487 3_4:+81104080 None:intergenic
GGCACAGGTCTTCAAAGGTG+TGG 0.623503 3_4:-81105168 Msa0526950:intron
GTGAAAGATGGAAAATGAAG+TGG 0.633710 3_4:+81105630 None:intergenic
TCAGTCTCTTCATATTTGTG+AGG 0.638414 3_4:-81103865 Msa0526950:three_prime_UTR
GATTCTTGTTGCTTGGAATG+TGG 0.641176 3_4:+81104042 None:intergenic
AAATTGCTGCACAATTGCCA+GGG 0.642018 3_4:-81104824 Msa0526950:CDS
TTGCTGCACAATTGCCAGGG+AGG 0.646864 3_4:-81104821 Msa0526950:CDS
TACAAGCAGAAGCTTAGGAA+AGG 0.647918 3_4:-81105394 Msa0526950:CDS
GCAGCTGAGAAAATGAGTTG+AGG 0.656072 3_4:+81105652 None:intergenic
GAAAGGTCTATGGTCACCTG+AGG 0.676025 3_4:-81105377 Msa0526950:CDS
ATGCACTTAGGAAATTACAA+TGG 0.678705 3_4:-81103748 Msa0526950:three_prime_UTR
TTATGTCCCCTAAACCATCA+GGG 0.688532 3_4:+81104067 None:intergenic
AGAAATGAGGTATTAGTTGG+GGG 0.699843 3_4:+81104348 None:intergenic
GATACATAGAATATATGACA+TGG 0.715563 3_4:+81103662 None:intergenic
AAAGTGGTTTATGAGTGACA+GGG 0.778051 3_4:+81104730 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAATCATATTACTAAATA+TGG - chr3_4:81103936-81103955 Msa0526950:three_prime_UTR 15.0%
!! GAGATTGAATTATTAAAATT+TGG + chr3_4:81104015-81104034 None:intergenic 15.0%
!!! TATTTGTCAATGTATTTTAT+TGG - chr3_4:81104087-81104106 Msa0526950:CDS 15.0%
!! AAAACATTATCATAATAAGA+AGG + chr3_4:81104263-81104282 None:intergenic 15.0%
!!! TGTATTTTTTAATTGTTATG+TGG - chr3_4:81104358-81104377 Msa0526950:CDS 15.0%
!! ATAATGAAATAAAGAATCTT+TGG - chr3_4:81104482-81104501 Msa0526950:CDS 15.0%
!! ATATACAGAAACAAAATATT+TGG + chr3_4:81105368-81105387 None:intergenic 15.0%
!! TTGAATCATATTACTAAATA+TGG - chr3_4:81103936-81103955 Msa0526950:three_prime_UTR 15.0%
!! GAGATTGAATTATTAAAATT+TGG + chr3_4:81104015-81104034 None:intergenic 15.0%
!!! TATTTGTCAATGTATTTTAT+TGG - chr3_4:81104087-81104106 Msa0526950:CDS 15.0%
!! AAAACATTATCATAATAAGA+AGG + chr3_4:81104263-81104282 None:intergenic 15.0%
!!! TGTATTTTTTAATTGTTATG+TGG - chr3_4:81104358-81104377 Msa0526950:CDS 15.0%
!! ATAATGAAATAAAGAATCTT+TGG - chr3_4:81104482-81104501 Msa0526950:CDS 15.0%
!! ATATACAGAAACAAAATATT+TGG + chr3_4:81105368-81105387 None:intergenic 15.0%
!! ATTATCATAATAAGAAGGAT+TGG + chr3_4:81104258-81104277 None:intergenic 20.0%
!!! ATTATTTGGAATATTATCAG+TGG + chr3_4:81104815-81104834 None:intergenic 20.0%
!! ATAAGATACTATTCTTCATA+GGG + chr3_4:81105029-81105048 None:intergenic 20.0%
!!! TGACATAAAGAATGATTTTA+AGG - chr3_4:81105305-81105324 Msa0526950:CDS 20.0%
!!! GACATAAAGAATGATTTTAA+GGG - chr3_4:81105306-81105325 Msa0526950:CDS 20.0%
!!! ACATAAAGAATGATTTTAAG+GGG - chr3_4:81105307-81105326 Msa0526950:CDS 20.0%
!! TTTCCCTTTATTAATTTCTA+AGG - chr3_4:81105441-81105460 Msa0526950:five_prime_UTR 20.0%
!! ACACCTTAGAAATTAATAAA+GGG + chr3_4:81105447-81105466 None:intergenic 20.0%
!!! TTTATTAATTTCTAAGGTGT+GGG - chr3_4:81105447-81105466 Msa0526950:five_prime_UTR 20.0%
!! ATTATCATAATAAGAAGGAT+TGG + chr3_4:81104258-81104277 None:intergenic 20.0%
!!! ATTATTTGGAATATTATCAG+TGG + chr3_4:81104815-81104834 None:intergenic 20.0%
!! ATAAGATACTATTCTTCATA+GGG + chr3_4:81105029-81105048 None:intergenic 20.0%
!!! TGACATAAAGAATGATTTTA+AGG - chr3_4:81105305-81105324 Msa0526950:CDS 20.0%
!!! GACATAAAGAATGATTTTAA+GGG - chr3_4:81105306-81105325 Msa0526950:CDS 20.0%
!!! ACATAAAGAATGATTTTAAG+GGG - chr3_4:81105307-81105326 Msa0526950:CDS 20.0%
!! TTTCCCTTTATTAATTTCTA+AGG - chr3_4:81105441-81105460 Msa0526950:five_prime_UTR 20.0%
!! ACACCTTAGAAATTAATAAA+GGG + chr3_4:81105447-81105466 None:intergenic 20.0%
!!! TTTATTAATTTCTAAGGTGT+GGG - chr3_4:81105447-81105466 Msa0526950:five_prime_UTR 20.0%
! ATATTATGAAGTGTGAAAGA+TGG + chr3_4:81103661-81103680 None:intergenic 25.0%
! TCATTGTATTTGTAAGTTTG+AGG - chr3_4:81103814-81103833 Msa0526950:three_prime_UTR 25.0%
! CATTGTATTTGTAAGTTTGA+GGG - chr3_4:81103815-81103834 Msa0526950:three_prime_UTR 25.0%
!!! TTTGTAGTTTGTTAGTAGTT+TGG + chr3_4:81103842-81103861 None:intergenic 25.0%
! AACTACTAACAAACTACAAA+TGG - chr3_4:81103842-81103861 Msa0526950:three_prime_UTR 25.0%
! ACTACTAACAAACTACAAAT+GGG - chr3_4:81103843-81103862 Msa0526950:three_prime_UTR 25.0%
! CATATTACTAAATATGGTCA+TGG - chr3_4:81103942-81103961 Msa0526950:three_prime_UTR 25.0%
! TCTCTTGATTATATGCTAAA+AGG + chr3_4:81104037-81104056 None:intergenic 25.0%
!! AATGTACCTCTTTTTAAATC+AGG + chr3_4:81104171-81104190 None:intergenic 25.0%
! TTTAATTGTTATGTGGTTGT+TGG - chr3_4:81104365-81104384 Msa0526950:CDS 25.0%
!! ATATGATGTGTTTTCTTAGA+TGG - chr3_4:81104425-81104444 Msa0526950:CDS 25.0%
! ATGTGTAATTCATCTGAATA+GGG + chr3_4:81104792-81104811 None:intergenic 25.0%
! GATAAGATACTATTCTTCAT+AGG + chr3_4:81105030-81105049 None:intergenic 25.0%
! AGAATAGTATCTTATCTTCT+TGG - chr3_4:81105034-81105053 Msa0526950:intron 25.0%
! GAATAGTATCTTATCTTCTT+GGG - chr3_4:81105035-81105054 Msa0526950:intron 25.0%
! AATAGTATCTTATCTTCTTG+GGG - chr3_4:81105036-81105055 Msa0526950:intron 25.0%
! TGTTTGATTCTCTTTAATAG+AGG + chr3_4:81105079-81105098 None:intergenic 25.0%
!! TGATTTTGTAGCATTAACAT+TGG + chr3_4:81105141-81105160 None:intergenic 25.0%
!! TCTTATAATATAGCAGCTTT+TGG - chr3_4:81105264-81105283 Msa0526950:intron 25.0%
! CACACCTTAGAAATTAATAA+AGG + chr3_4:81105448-81105467 None:intergenic 25.0%
!!! CTTTATTAATTTCTAAGGTG+TGG - chr3_4:81105446-81105465 Msa0526950:five_prime_UTR 25.0%
! TGAAAAAGTGAAACTAGTTA+TGG + chr3_4:81105568-81105587 None:intergenic 25.0%
!!! ACTAGTTTCACTTTTTCAAT+TGG - chr3_4:81105570-81105589 Msa0526950:five_prime_UTR 25.0%
!!! CTAGTTTCACTTTTTCAATT+GGG - chr3_4:81105571-81105590 Msa0526950:five_prime_UTR 25.0%
! GATACATAGAATATATGACA+TGG + chr3_4:81105617-81105636 None:intergenic 25.0%
! ATATTATGAAGTGTGAAAGA+TGG + chr3_4:81103661-81103680 None:intergenic 25.0%
! TCATTGTATTTGTAAGTTTG+AGG - chr3_4:81103814-81103833 Msa0526950:three_prime_UTR 25.0%
! CATTGTATTTGTAAGTTTGA+GGG - chr3_4:81103815-81103834 Msa0526950:three_prime_UTR 25.0%
!!! TTTGTAGTTTGTTAGTAGTT+TGG + chr3_4:81103842-81103861 None:intergenic 25.0%
! AACTACTAACAAACTACAAA+TGG - chr3_4:81103842-81103861 Msa0526950:three_prime_UTR 25.0%
! ACTACTAACAAACTACAAAT+GGG - chr3_4:81103843-81103862 Msa0526950:three_prime_UTR 25.0%
! CATATTACTAAATATGGTCA+TGG - chr3_4:81103942-81103961 Msa0526950:three_prime_UTR 25.0%
! TCTCTTGATTATATGCTAAA+AGG + chr3_4:81104037-81104056 None:intergenic 25.0%
!! AATGTACCTCTTTTTAAATC+AGG + chr3_4:81104171-81104190 None:intergenic 25.0%
! TTTAATTGTTATGTGGTTGT+TGG - chr3_4:81104365-81104384 Msa0526950:CDS 25.0%
!! ATATGATGTGTTTTCTTAGA+TGG - chr3_4:81104425-81104444 Msa0526950:CDS 25.0%
! ATGTGTAATTCATCTGAATA+GGG + chr3_4:81104792-81104811 None:intergenic 25.0%
! GATAAGATACTATTCTTCAT+AGG + chr3_4:81105030-81105049 None:intergenic 25.0%
! AGAATAGTATCTTATCTTCT+TGG - chr3_4:81105034-81105053 Msa0526950:intron 25.0%
! GAATAGTATCTTATCTTCTT+GGG - chr3_4:81105035-81105054 Msa0526950:intron 25.0%
! AATAGTATCTTATCTTCTTG+GGG - chr3_4:81105036-81105055 Msa0526950:intron 25.0%
! TGTTTGATTCTCTTTAATAG+AGG + chr3_4:81105079-81105098 None:intergenic 25.0%
!! TGATTTTGTAGCATTAACAT+TGG + chr3_4:81105141-81105160 None:intergenic 25.0%
!! TCTTATAATATAGCAGCTTT+TGG - chr3_4:81105264-81105283 Msa0526950:intron 25.0%
! CACACCTTAGAAATTAATAA+AGG + chr3_4:81105448-81105467 None:intergenic 25.0%
!!! CTTTATTAATTTCTAAGGTG+TGG - chr3_4:81105446-81105465 Msa0526950:five_prime_UTR 25.0%
! TGAAAAAGTGAAACTAGTTA+TGG + chr3_4:81105568-81105587 None:intergenic 25.0%
!!! ACTAGTTTCACTTTTTCAAT+TGG - chr3_4:81105570-81105589 Msa0526950:five_prime_UTR 25.0%
!!! CTAGTTTCACTTTTTCAATT+GGG - chr3_4:81105571-81105590 Msa0526950:five_prime_UTR 25.0%
! GATACATAGAATATATGACA+TGG + chr3_4:81105617-81105636 None:intergenic 25.0%
CTGATAAACAGAAAGATTGT+TGG + chr3_4:81103781-81103800 None:intergenic 30.0%
TAATATATACCTGCTTGCTT+AGG + chr3_4:81103984-81104003 None:intergenic 30.0%
! TCAATGTATTTTATTGGCAC+AGG - chr3_4:81104093-81104112 Msa0526950:CDS 30.0%
!! TTAGGTGGATTAATTACTTG+AGG - chr3_4:81104145-81104164 Msa0526950:CDS 30.0%
ATTGAACTTCATTCAGTACT+AGG - chr3_4:81104216-81104235 Msa0526950:CDS 30.0%
TTGAACTTCATTCAGTACTA+GGG - chr3_4:81104217-81104236 Msa0526950:CDS 30.0%
AAAGAAGAAACTGAGACAAA+AGG - chr3_4:81104516-81104535 Msa0526950:CDS 30.0%
AAGAAGAAACTGAGACAAAA+GGG - chr3_4:81104517-81104536 Msa0526950:CDS 30.0%
AAGTACTTTCTGATCTCATA+AGG + chr3_4:81104657-81104676 None:intergenic 30.0%
AGGACAATTGAAGATTGTTT+AGG + chr3_4:81104706-81104725 None:intergenic 30.0%
TTTCAGTTGAATAACCTTTG+AGG + chr3_4:81104726-81104745 None:intergenic 30.0%
CAAAGGTTATTCAACTGAAA+TGG - chr3_4:81104726-81104745 Msa0526950:CDS 30.0%
TTATTCAACTGAAATGGAAG+TGG - chr3_4:81104732-81104751 Msa0526950:CDS 30.0%
TTCTTGTTCCAACTATTTGA+TGG - chr3_4:81104759-81104778 Msa0526950:CDS 30.0%
TCTTGTTCCAACTATTTGAT+GGG - chr3_4:81104760-81104779 Msa0526950:CDS 30.0%
GTAATTTCCCATCAAATAGT+TGG + chr3_4:81104770-81104789 None:intergenic 30.0%
GATGTGTAATTCATCTGAAT+AGG + chr3_4:81104793-81104812 None:intergenic 30.0%
TGAGAAGAGTTTGGATTATT+TGG + chr3_4:81104829-81104848 None:intergenic 30.0%
ATAATCCAAACTCTTCTCAT+TGG - chr3_4:81104830-81104849 Msa0526950:CDS 30.0%
!! CAAAAGGTTTTAATCCTGTT+TGG + chr3_4:81104861-81104880 None:intergenic 30.0%
AATTCAGAGTTCATGTCAAA+AGG + chr3_4:81104877-81104896 None:intergenic 30.0%
! AAGAAATGAGGTATTAGTTG+GGG + chr3_4:81104932-81104951 None:intergenic 30.0%
! GAAGAAATGAGGTATTAGTT+GGG + chr3_4:81104933-81104952 None:intergenic 30.0%
!! AAAAGTATTGGGAAGAAATG+AGG + chr3_4:81104944-81104963 None:intergenic 30.0%
!! GGTTTGTAGCAAAAAGTATT+GGG + chr3_4:81104955-81104974 None:intergenic 30.0%
! TGGTTTGTAGCAAAAAGTAT+TGG + chr3_4:81104956-81104975 None:intergenic 30.0%
AAGAGACTGACATAAATGTT+TGG + chr3_4:81105401-81105420 None:intergenic 30.0%
ATGCACTTAGGAAATTACAA+TGG - chr3_4:81105528-81105547 Msa0526950:five_prime_UTR 30.0%
AGTGAAACTAGTTATGGATA+TGG + chr3_4:81105562-81105581 None:intergenic 30.0%
CTGATAAACAGAAAGATTGT+TGG + chr3_4:81103781-81103800 None:intergenic 30.0%
TAATATATACCTGCTTGCTT+AGG + chr3_4:81103984-81104003 None:intergenic 30.0%
! TCAATGTATTTTATTGGCAC+AGG - chr3_4:81104093-81104112 Msa0526950:CDS 30.0%
!! TTAGGTGGATTAATTACTTG+AGG - chr3_4:81104145-81104164 Msa0526950:CDS 30.0%
ATTGAACTTCATTCAGTACT+AGG - chr3_4:81104216-81104235 Msa0526950:CDS 30.0%
TTGAACTTCATTCAGTACTA+GGG - chr3_4:81104217-81104236 Msa0526950:CDS 30.0%
AAAGAAGAAACTGAGACAAA+AGG - chr3_4:81104516-81104535 Msa0526950:CDS 30.0%
AAGAAGAAACTGAGACAAAA+GGG - chr3_4:81104517-81104536 Msa0526950:CDS 30.0%
AAGTACTTTCTGATCTCATA+AGG + chr3_4:81104657-81104676 None:intergenic 30.0%
AGGACAATTGAAGATTGTTT+AGG + chr3_4:81104706-81104725 None:intergenic 30.0%
TTTCAGTTGAATAACCTTTG+AGG + chr3_4:81104726-81104745 None:intergenic 30.0%
CAAAGGTTATTCAACTGAAA+TGG - chr3_4:81104726-81104745 Msa0526950:CDS 30.0%
TTATTCAACTGAAATGGAAG+TGG - chr3_4:81104732-81104751 Msa0526950:CDS 30.0%
TTCTTGTTCCAACTATTTGA+TGG - chr3_4:81104759-81104778 Msa0526950:CDS 30.0%
TCTTGTTCCAACTATTTGAT+GGG - chr3_4:81104760-81104779 Msa0526950:CDS 30.0%
GTAATTTCCCATCAAATAGT+TGG + chr3_4:81104770-81104789 None:intergenic 30.0%
GATGTGTAATTCATCTGAAT+AGG + chr3_4:81104793-81104812 None:intergenic 30.0%
TGAGAAGAGTTTGGATTATT+TGG + chr3_4:81104829-81104848 None:intergenic 30.0%
ATAATCCAAACTCTTCTCAT+TGG - chr3_4:81104830-81104849 Msa0526950:CDS 30.0%
!! CAAAAGGTTTTAATCCTGTT+TGG + chr3_4:81104861-81104880 None:intergenic 30.0%
AATTCAGAGTTCATGTCAAA+AGG + chr3_4:81104877-81104896 None:intergenic 30.0%
! AAGAAATGAGGTATTAGTTG+GGG + chr3_4:81104932-81104951 None:intergenic 30.0%
! GAAGAAATGAGGTATTAGTT+GGG + chr3_4:81104933-81104952 None:intergenic 30.0%
!! AAAAGTATTGGGAAGAAATG+AGG + chr3_4:81104944-81104963 None:intergenic 30.0%
!! GGTTTGTAGCAAAAAGTATT+GGG + chr3_4:81104955-81104974 None:intergenic 30.0%
! TGGTTTGTAGCAAAAAGTAT+TGG + chr3_4:81104956-81104975 None:intergenic 30.0%
AAGAGACTGACATAAATGTT+TGG + chr3_4:81105401-81105420 None:intergenic 30.0%
ATGCACTTAGGAAATTACAA+TGG - chr3_4:81105528-81105547 Msa0526950:five_prime_UTR 30.0%
AGTGAAACTAGTTATGGATA+TGG + chr3_4:81105562-81105581 None:intergenic 30.0%
GTGAAAGATGGAAAATGAAG+TGG + chr3_4:81103649-81103668 None:intergenic 35.0%
! CAATAAACAAAGAGTGTGAC+AGG + chr3_4:81103748-81103767 None:intergenic 35.0%
CAGAAAGATTGTTGGATTTG+TGG + chr3_4:81103773-81103792 None:intergenic 35.0%
! AAAAGTTTTTCATCCTCCTC+AGG + chr3_4:81103918-81103937 None:intergenic 35.0%
CTAAATATGGTCATGGATGT+TGG - chr3_4:81103949-81103968 Msa0526950:three_prime_UTR 35.0%
TTGAGGCCTGATTTAAAAAG+AGG - chr3_4:81104162-81104181 Msa0526950:CDS 35.0%
TTCATTCAGTACTAGGGAAT+AGG - chr3_4:81104223-81104242 Msa0526950:CDS 35.0%
ACATCATATGCATGTCAACA+AGG + chr3_4:81104414-81104433 None:intergenic 35.0%
AAAGTGGTTTATGAGTGACA+GGG + chr3_4:81104549-81104568 None:intergenic 35.0%
! ACATTTTCTACCTCAGAAAG+TGG + chr3_4:81104565-81104584 None:intergenic 35.0%
! GGTAGAAAATGTTGATGAAG+AGG - chr3_4:81104573-81104592 Msa0526950:CDS 35.0%
!! ATATTTCTGCTGCTTTCTCT+TGG + chr3_4:81104615-81104634 None:intergenic 35.0%
ATAGGAAACAGCATCTGATT+TGG + chr3_4:81104680-81104699 None:intergenic 35.0%
TGAAGATTGTTTAGGCTCAT+AGG + chr3_4:81104698-81104717 None:intergenic 35.0%
CAATCTTCAATTGTCCTCAA+AGG - chr3_4:81104709-81104728 Msa0526950:CDS 35.0%
TTGAACCAATGAGAAGAGTT+TGG + chr3_4:81104838-81104857 None:intergenic 35.0%
! AGAAATGAGGTATTAGTTGG+GGG + chr3_4:81104931-81104950 None:intergenic 35.0%
! GGAAGAAATGAGGTATTAGT+TGG + chr3_4:81104934-81104953 None:intergenic 35.0%
GACATAGAAACATCTTGTGA+AGG + chr3_4:81104994-81105013 None:intergenic 35.0%
TTGAGAAGATTCTTGTTGCT+TGG + chr3_4:81105244-81105263 None:intergenic 35.0%
TCAGTCTCTTCATATTTGTG+AGG - chr3_4:81105411-81105430 Msa0526950:CDS 35.0%
GTGGGTAGAATTGCAAAATA+AGG - chr3_4:81105465-81105484 Msa0526950:five_prime_UTR 35.0%
TTTGTTTCAGTGATGCACTT+AGG - chr3_4:81105516-81105535 Msa0526950:five_prime_UTR 35.0%
! GAGATTAGTCATTGCGATAA+TGG + chr3_4:81105643-81105662 None:intergenic 35.0%
GTGAAAGATGGAAAATGAAG+TGG + chr3_4:81103649-81103668 None:intergenic 35.0%
! CAATAAACAAAGAGTGTGAC+AGG + chr3_4:81103748-81103767 None:intergenic 35.0%
CAGAAAGATTGTTGGATTTG+TGG + chr3_4:81103773-81103792 None:intergenic 35.0%
! AAAAGTTTTTCATCCTCCTC+AGG + chr3_4:81103918-81103937 None:intergenic 35.0%
CTAAATATGGTCATGGATGT+TGG - chr3_4:81103949-81103968 Msa0526950:three_prime_UTR 35.0%
TTGAGGCCTGATTTAAAAAG+AGG - chr3_4:81104162-81104181 Msa0526950:CDS 35.0%
TTCATTCAGTACTAGGGAAT+AGG - chr3_4:81104223-81104242 Msa0526950:CDS 35.0%
ACATCATATGCATGTCAACA+AGG + chr3_4:81104414-81104433 None:intergenic 35.0%
AAAGTGGTTTATGAGTGACA+GGG + chr3_4:81104549-81104568 None:intergenic 35.0%
! ACATTTTCTACCTCAGAAAG+TGG + chr3_4:81104565-81104584 None:intergenic 35.0%
! GGTAGAAAATGTTGATGAAG+AGG - chr3_4:81104573-81104592 Msa0526950:CDS 35.0%
!! ATATTTCTGCTGCTTTCTCT+TGG + chr3_4:81104615-81104634 None:intergenic 35.0%
ATAGGAAACAGCATCTGATT+TGG + chr3_4:81104680-81104699 None:intergenic 35.0%
TGAAGATTGTTTAGGCTCAT+AGG + chr3_4:81104698-81104717 None:intergenic 35.0%
CAATCTTCAATTGTCCTCAA+AGG - chr3_4:81104709-81104728 Msa0526950:CDS 35.0%
TTGAACCAATGAGAAGAGTT+TGG + chr3_4:81104838-81104857 None:intergenic 35.0%
! AGAAATGAGGTATTAGTTGG+GGG + chr3_4:81104931-81104950 None:intergenic 35.0%
! GGAAGAAATGAGGTATTAGT+TGG + chr3_4:81104934-81104953 None:intergenic 35.0%
GACATAGAAACATCTTGTGA+AGG + chr3_4:81104994-81105013 None:intergenic 35.0%
TTGAGAAGATTCTTGTTGCT+TGG + chr3_4:81105244-81105263 None:intergenic 35.0%
TCAGTCTCTTCATATTTGTG+AGG - chr3_4:81105411-81105430 Msa0526950:CDS 35.0%
GTGGGTAGAATTGCAAAATA+AGG - chr3_4:81105465-81105484 Msa0526950:five_prime_UTR 35.0%
TTTGTTTCAGTGATGCACTT+AGG - chr3_4:81105516-81105535 Msa0526950:five_prime_UTR 35.0%
! GAGATTAGTCATTGCGATAA+TGG + chr3_4:81105643-81105662 None:intergenic 35.0%
TACAAGCAGAAGCTTAGGAA+AGG - chr3_4:81103882-81103901 Msa0526950:three_prime_UTR 40.0%
AGAAGCTTAGGAAAGGTCTA+TGG - chr3_4:81103889-81103908 Msa0526950:three_prime_UTR 40.0%
TTATTGGCACAGGTCTTCAA+AGG - chr3_4:81104103-81104122 Msa0526950:CDS 40.0%
! TGTGTGAGTGTTGTAAACTC+TGG + chr3_4:81104305-81104324 None:intergenic 40.0%
AAATTGCTGCACAATTGCCA+GGG - chr3_4:81104452-81104471 Msa0526950:CDS 40.0%
ATTTCATTATCAGTCCTCCC+TGG + chr3_4:81104472-81104491 None:intergenic 40.0%
GAAAGTGGTTTATGAGTGAC+AGG + chr3_4:81104550-81104569 None:intergenic 40.0%
CACTCATAAACCACTTTCTG+AGG - chr3_4:81104552-81104571 Msa0526950:CDS 40.0%
TCAACTGAAATGGAAGTGGA+AGG - chr3_4:81104736-81104755 Msa0526950:CDS 40.0%
!! TCTCATTGGTTCAACCAAAC+AGG - chr3_4:81104844-81104863 Msa0526950:intron 40.0%
GTGAAGATACTCATTCCACT+TGG + chr3_4:81105115-81105134 None:intergenic 40.0%
ATAAAGCCTGCCACAGATTT+AGG - chr3_4:81105186-81105205 Msa0526950:intron 40.0%
ATTTAGGCCCTGATGGTTTA+GGG - chr3_4:81105202-81105221 Msa0526950:intron 40.0%
TTATGTCCCCTAAACCATCA+GGG + chr3_4:81105212-81105231 None:intergenic 40.0%
ATTATGTCCCCTAAACCATC+AGG + chr3_4:81105213-81105232 None:intergenic 40.0%
! GATTCTTGTTGCTTGGAATG+TGG + chr3_4:81105237-81105256 None:intergenic 40.0%
!! AATGATTTTAAGGGGCTCCA+AGG - chr3_4:81105315-81105334 Msa0526950:CDS 40.0%
!! ATGATTTTAAGGGGCTCCAA+GGG - chr3_4:81105316-81105335 Msa0526950:CDS 40.0%
! ACACACAATCTGAAATCCCT+TGG + chr3_4:81105335-81105354 None:intergenic 40.0%
TCGCAATGACTAATCTCTAC+CGG - chr3_4:81105646-81105665 Msa0526950:five_prime_UTR 40.0%
TACAAGCAGAAGCTTAGGAA+AGG - chr3_4:81103882-81103901 Msa0526950:three_prime_UTR 40.0%
AGAAGCTTAGGAAAGGTCTA+TGG - chr3_4:81103889-81103908 Msa0526950:three_prime_UTR 40.0%
TTATTGGCACAGGTCTTCAA+AGG - chr3_4:81104103-81104122 Msa0526950:CDS 40.0%
! TGTGTGAGTGTTGTAAACTC+TGG + chr3_4:81104305-81104324 None:intergenic 40.0%
AAATTGCTGCACAATTGCCA+GGG - chr3_4:81104452-81104471 Msa0526950:CDS 40.0%
ATTTCATTATCAGTCCTCCC+TGG + chr3_4:81104472-81104491 None:intergenic 40.0%
GAAAGTGGTTTATGAGTGAC+AGG + chr3_4:81104550-81104569 None:intergenic 40.0%
CACTCATAAACCACTTTCTG+AGG - chr3_4:81104552-81104571 Msa0526950:CDS 40.0%
TCAACTGAAATGGAAGTGGA+AGG - chr3_4:81104736-81104755 Msa0526950:CDS 40.0%
!! TCTCATTGGTTCAACCAAAC+AGG - chr3_4:81104844-81104863 Msa0526950:intron 40.0%
GTGAAGATACTCATTCCACT+TGG + chr3_4:81105115-81105134 None:intergenic 40.0%
ATAAAGCCTGCCACAGATTT+AGG - chr3_4:81105186-81105205 Msa0526950:intron 40.0%
ATTTAGGCCCTGATGGTTTA+GGG - chr3_4:81105202-81105221 Msa0526950:intron 40.0%
TTATGTCCCCTAAACCATCA+GGG + chr3_4:81105212-81105231 None:intergenic 40.0%
ATTATGTCCCCTAAACCATC+AGG + chr3_4:81105213-81105232 None:intergenic 40.0%
! GATTCTTGTTGCTTGGAATG+TGG + chr3_4:81105237-81105256 None:intergenic 40.0%
!! AATGATTTTAAGGGGCTCCA+AGG - chr3_4:81105315-81105334 Msa0526950:CDS 40.0%
!! ATGATTTTAAGGGGCTCCAA+GGG - chr3_4:81105316-81105335 Msa0526950:CDS 40.0%
! ACACACAATCTGAAATCCCT+TGG + chr3_4:81105335-81105354 None:intergenic 40.0%
TCGCAATGACTAATCTCTAC+CGG - chr3_4:81105646-81105665 Msa0526950:five_prime_UTR 40.0%
GCAGCTGAGAAAATGAGTTG+AGG + chr3_4:81103627-81103646 None:intergenic 45.0%
GTTGCTACAAGCAGAAGCTT+AGG - chr3_4:81103877-81103896 Msa0526950:three_prime_UTR 45.0%
AGTTCAGTTCCTAAGCAAGC+AGG - chr3_4:81103972-81103991 Msa0526950:three_prime_UTR 45.0%
! AAAGGTGTGGTAAGAGTTGC+AGG - chr3_4:81104121-81104140 Msa0526950:CDS 45.0%
CAAATTGCTGCACAATTGCC+AGG - chr3_4:81104451-81104470 Msa0526950:CDS 45.0%
GAAGGAACATCAGCAAGTGA+TGG + chr3_4:81104976-81104995 None:intergenic 45.0%
CAGAAGAAGAAGAAGCCAAG+TGG - chr3_4:81105097-81105116 Msa0526950:CDS 45.0%
GATTTAGGCCCTGATGGTTT+AGG - chr3_4:81105201-81105220 Msa0526950:intron 45.0%
TTTAGGCCCTGATGGTTTAG+GGG - chr3_4:81105203-81105222 Msa0526950:intron 45.0%
! AGCTTTTGGACAAGTGTAGC+AGG - chr3_4:81105278-81105297 Msa0526950:intron 45.0%
GCAGCTGAGAAAATGAGTTG+AGG + chr3_4:81103627-81103646 None:intergenic 45.0%
GTTGCTACAAGCAGAAGCTT+AGG - chr3_4:81103877-81103896 Msa0526950:three_prime_UTR 45.0%
AGTTCAGTTCCTAAGCAAGC+AGG - chr3_4:81103972-81103991 Msa0526950:three_prime_UTR 45.0%
! AAAGGTGTGGTAAGAGTTGC+AGG - chr3_4:81104121-81104140 Msa0526950:CDS 45.0%
CAAATTGCTGCACAATTGCC+AGG - chr3_4:81104451-81104470 Msa0526950:CDS 45.0%
GAAGGAACATCAGCAAGTGA+TGG + chr3_4:81104976-81104995 None:intergenic 45.0%
CAGAAGAAGAAGAAGCCAAG+TGG - chr3_4:81105097-81105116 Msa0526950:CDS 45.0%
GATTTAGGCCCTGATGGTTT+AGG - chr3_4:81105201-81105220 Msa0526950:intron 45.0%
TTTAGGCCCTGATGGTTTAG+GGG - chr3_4:81105203-81105222 Msa0526950:intron 45.0%
! AGCTTTTGGACAAGTGTAGC+AGG - chr3_4:81105278-81105297 Msa0526950:intron 45.0%
GAAAGGTCTATGGTCACCTG+AGG - chr3_4:81103899-81103918 Msa0526950:three_prime_UTR 50.0%
GTGGTAAGAGTTGCAGGCTT+AGG - chr3_4:81104127-81104146 Msa0526950:CDS 50.0%
GTAAGAGTTGCAGGCTTAGG+TGG - chr3_4:81104130-81104149 Msa0526950:CDS 50.0%
CAGAGTCTAACGCAAGTGGT+TGG + chr3_4:81104337-81104356 None:intergenic 50.0%
CAACCACTTGCGTTAGACTC+TGG - chr3_4:81104335-81104354 Msa0526950:CDS 50.0%
ACACCAGAGTCTAACGCAAG+TGG + chr3_4:81104341-81104360 None:intergenic 50.0%
ACCATCAGGGCCTAAATCTG+TGG + chr3_4:81105199-81105218 None:intergenic 50.0%
GAAAGGTCTATGGTCACCTG+AGG - chr3_4:81103899-81103918 Msa0526950:three_prime_UTR 50.0%
GTGGTAAGAGTTGCAGGCTT+AGG - chr3_4:81104127-81104146 Msa0526950:CDS 50.0%
GTAAGAGTTGCAGGCTTAGG+TGG - chr3_4:81104130-81104149 Msa0526950:CDS 50.0%
CAGAGTCTAACGCAAGTGGT+TGG + chr3_4:81104337-81104356 None:intergenic 50.0%
CAACCACTTGCGTTAGACTC+TGG - chr3_4:81104335-81104354 Msa0526950:CDS 50.0%
ACACCAGAGTCTAACGCAAG+TGG + chr3_4:81104341-81104360 None:intergenic 50.0%
ACCATCAGGGCCTAAATCTG+TGG + chr3_4:81105199-81105218 None:intergenic 50.0%
AGGTCTATGGTCACCTGAGG+AGG - chr3_4:81103902-81103921 Msa0526950:three_prime_UTR 55.0%
GGCACAGGTCTTCAAAGGTG+TGG - chr3_4:81104108-81104127 Msa0526950:CDS 55.0%
TTGCTGCACAATTGCCAGGG+AGG - chr3_4:81104455-81104474 Msa0526950:CDS 55.0%
TCAGGGCCTAAATCTGTGGC+AGG + chr3_4:81105195-81105214 None:intergenic 55.0%
GCCACAGATTTAGGCCCTGA+TGG - chr3_4:81105195-81105214 Msa0526950:intron 55.0%
AGGTCTATGGTCACCTGAGG+AGG - chr3_4:81103902-81103921 Msa0526950:three_prime_UTR 55.0%
GGCACAGGTCTTCAAAGGTG+TGG - chr3_4:81104108-81104127 Msa0526950:CDS 55.0%
TTGCTGCACAATTGCCAGGG+AGG - chr3_4:81104455-81104474 Msa0526950:CDS 55.0%
TCAGGGCCTAAATCTGTGGC+AGG + chr3_4:81105195-81105214 None:intergenic 55.0%
GCCACAGATTTAGGCCCTGA+TGG - chr3_4:81105195-81105214 Msa0526950:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81103624 81105674 81103624 ID=Msa0526950;Name=Msa0526950
chr3_4 mRNA 81103624 81105674 81103624 ID=Msa0526950-mRNA-1;Parent=Msa0526950;Name=Msa0526950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=237|1|1|1|1|1|3|378|371
chr3_4 exon 81103624 81104854 81103624 ID=Msa0526950-mRNA-1:exon:24469;Parent=Msa0526950-mRNA-1
chr3_4 exon 81105054 81105183 81105054 ID=Msa0526950-mRNA-1:exon:24468;Parent=Msa0526950-mRNA-1
chr3_4 exon 81105305 81105674 81105305 ID=Msa0526950-mRNA-1:exon:24467;Parent=Msa0526950-mRNA-1
chr3_4 five_prime_UTR 81105438 81105674 81105438 ID=Msa0526950-mRNA-1:five_prime_utr;Parent=Msa0526950-mRNA-1
chr3_4 CDS 81105305 81105437 81105305 ID=Msa0526950-mRNA-1:cds;Parent=Msa0526950-mRNA-1
chr3_4 CDS 81105054 81105183 81105054 ID=Msa0526950-mRNA-1:cds;Parent=Msa0526950-mRNA-1
chr3_4 CDS 81104002 81104854 81104002 ID=Msa0526950-mRNA-1:cds;Parent=Msa0526950-mRNA-1
chr3_4 three_prime_UTR 81103624 81104001 81103624 ID=Msa0526950-mRNA-1:three_prime_utr;Parent=Msa0526950-mRNA-1
Gene Sequence

>Msa0526950

ATGGGAAGACACTCTTGTTGCTACAAGCAGAAGCTTAGGAAAGGTCTATGGTCACCTGAGGAGGATGAAAAACTTTTGAATCATATTACTAAATATGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTCTTCAAAGGTGTGGTAAGAGTTGCAGGCTTAGGTGGATTAATTACTTGAGGCCTGATTTAAAAAGAGGTACATTTTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATTCAGTACTAGGGAATAGATGGTCACAAATTGCTGCACAATTGCCAGGGAGGACTGATAATGAAATAAAGAATCTTTGGAATTCTTGCTTAAAGAAGAAACTGAGACAAAAGGGTATAGACCCTGTCACTCATAAACCACTTTCTGAGGTAGAAAATGTTGATGAAGAGGAAGAAAAAACAAGAAGCCAAGAGAAAGCAGCAGAAATATCAGAATCAGATGAATTGAACCTTATGAGATCAGAAAGTACTTCCAAATCAGATGCTGTTTCCTATGAGCCTAAACAATCTTCAATTGTCCTCAAAGGTTATTCAACTGAAATGGAAGTGGAAGGTTCTTGTTCCAACTATTTGATGGGAAATTACCCTATTCAGATGAATTACACATCCACTGATAATATTCCAAATAATCCAAACTCTTCTCATTGGTTCAACCAAACAGGATTAAAACCTTTTGACATGAACTCTGAATTTACTTCAACTTCTAACATCATGTCAATTCTTCCCCCAACTAATACCTCATTTCTTCCCAATACTTTTTGCTACAAACCATCACTTGCTGATGTTCCTTCACAAGATGTTTCTATGTCTTCATCTTCTTTCCCTATGAAGAATAGTATCTTATCTTCTTGGGGAATTACAGATTGTGACACCTCTATTAAAGAGAATCAAACAGAAGAAGAAGAAGCCAAGTGGAATGAGTATCTTCACAATCCAATGTTAATGCTACAAAATCAAGCATCTGAATCTTTATGCAATGAAATAAAGCCTGCCACAGATTTAGGCCCTGATGGTTTAGGGGACATAATGCCACATTCCAAGCAACAAGAATCTTCTCAATCTTATAATATAGCAGCTTTTGGACAAGTGTAG
Protein sequence

>Msa0526950

MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENVDEEEEKTRSQEKAAEISESDELNLMRSESTSKSDAVSYEPKQSSIVLKGYSTEMEVEGSCSNYLMGNYPIQMNYTSTDNIPNNPNSSHWFNQTGLKPFDMNSEFTSTSNIMSILPPTNTSFLPNTFCYKPSLADVPSQDVSMSSSSFPMKNSILSSWGITDCDTSIKENQTEEEEAKWNEYLHNPMLMLQNQASESLCNEIKPATDLGPDGLGDIMPHSKQQESSQSYNIAAFGQV*