AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930780 MtrunA17_Chr8g0391771 98.344 604 10 0 1 604 1 604 0.0 1200
Msa0930780 MtrunA17_Chr1g0161371 83.113 604 97 2 1 604 1 599 0.0 965
Msa0930780 MtrunA17_Chr8g0344311 83.388 608 91 5 1 604 1 602 0.0 948
Msa0930780 MtrunA17_Chr4g0076251 49.540 543 233 12 56 573 25 551 3.71e-147 438
Msa0930780 MtrunA17_Chr2g0290411 47.993 548 253 9 57 587 13 545 1.40e-144 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930780 AT1G24764.1 74.519 624 136 8 1 604 1 621 0.0 890
Msa0930780 AT1G24764.3 74.519 624 136 8 1 604 60 680 0.0 887
Msa0930780 AT1G68060.1 75.980 612 125 10 1 597 1 605 0.0 886
Msa0930780 AT1G14840.1 74.497 596 129 10 20 605 11 593 0.0 840
Msa0930780 AT2G01750.1 75.648 579 129 6 30 604 47 617 0.0 821
Msa0930780 AT2G01750.2 75.606 578 129 6 30 603 47 616 0.0 820
Msa0930780 AT1G14840.2 72.148 596 128 11 20 605 11 578 0.0 798
Msa0930780 AT1G24764.2 78.556 471 95 4 137 604 1 468 0.0 731
Msa0930780 AT4G17220.1 46.692 529 234 7 57 578 6 493 1.58e-134 404

Find 152 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGGTTTCCGGATCGTTTA+AGG 0.181490 6_2:-79873765 Msa0930780:CDS
CCGGTGCCGTTGACGGTTTC+CGG 0.215030 6_2:-79873776 Msa0930780:CDS
CCAGGAGGAAAACAAAATTT+TGG 0.247069 6_2:-79872110 Msa0930780:intron
CTTTCTCTGTCACACAGTTT+TGG 0.249206 6_2:-79874150 Msa0930780:five_prime_UTR
AGGAGTAAAATTCTTCTAAA+TGG 0.256803 6_2:-79871140 Msa0930780:CDS
TGTTTCATACTACTAGTTAA+TGG 0.264351 6_2:+79873963 None:intergenic
ACAAAGAGGAAAACAATAAT+TGG 0.267719 6_2:-79871070 Msa0930780:CDS
CAATAATTGGAAAGGAAGTT+TGG 0.278285 6_2:-79871057 Msa0930780:CDS
CCTCTAGTTCCCTGACAGTT+TGG 0.279717 6_2:+79872044 None:intergenic
CTCTAGTTCCCTGACAGTTT+GGG 0.283034 6_2:+79872045 None:intergenic
CTAGAGGAGGCTGTCCTTGC+AGG 0.298621 6_2:-79872028 Msa0930780:CDS
TACTCTGTTTGCTGTTACCT+TGG 0.304652 6_2:+79871805 None:intergenic
CTTTGTGTATTCGTAGCATT+TGG 0.305525 6_2:-79873891 Msa0930780:five_prime_UTR
GCTCAGCAACAGCTTGTTAC+TGG 0.317278 6_2:-79870620 Msa0930780:CDS
TGCCTCAACTTCCATAGCTT+TGG 0.325019 6_2:+79870760 None:intergenic
AGCCATTCTAGCTCCTTTAG+AGG 0.326419 6_2:-79872545 Msa0930780:CDS
GGACCGTCTTACGAAATCTA+AGG 0.330608 6_2:-79872347 Msa0930780:CDS
CATGAACTTGCTTCATGGTT+CGG 0.340177 6_2:-79873678 Msa0930780:CDS
ATATCCAAACCCAACTCTAA+TGG 0.348727 6_2:-79871281 Msa0930780:CDS
TGTTGCTGAGCACTGTTCAT+AGG 0.349019 6_2:+79870632 None:intergenic
GCCTTCCCGACGACAATCCC+TGG 0.358957 6_2:-79871318 Msa0930780:CDS
GAACATCATCCTTTCAAATA+AGG 0.359369 6_2:-79871244 Msa0930780:CDS
ATCATCCACCATGGAGGCCT+TGG 0.362971 6_2:+79872279 None:intergenic
GATATAGAGGATAATGTTCC+AGG 0.366472 6_2:-79871005 Msa0930780:CDS
GCATTCGATGAGACCTAGTT+TGG 0.367879 6_2:-79873714 Msa0930780:CDS
TCTACTAATGGCAAGTCATT+TGG 0.371972 6_2:+79871026 None:intergenic
TGAAGAGCGACGATTCTTGC+AGG 0.372497 6_2:-79871717 Msa0930780:intron
TCGTCTGAGTGGTTTCGTTT+TGG 0.381626 6_2:-79873864 Msa0930780:five_prime_UTR
GGGAGAGATGCAGCAACTTC+GGG 0.383230 6_2:-79871578 Msa0930780:CDS
TGAAGCTGAAAGGACTGTTC+AGG 0.393847 6_2:-79872311 Msa0930780:CDS
AAACCCATTAGAGTTGGGTT+TGG 0.396024 6_2:+79871277 None:intergenic
GAGTTCATGAACTTGCTTCA+TGG 0.400786 6_2:-79873683 Msa0930780:CDS
GAAGAATTGTCGAAGGTAGA+TGG 0.401031 6_2:-79872819 Msa0930780:CDS
TTATCCTCTATATCTACTAA+TGG 0.416061 6_2:+79871014 None:intergenic
TGGTTCGGATCCAGTGAAAC+TGG 0.417554 6_2:-79873663 Msa0930780:CDS
TATCCAAACCCAACTCTAAT+GGG 0.418318 6_2:-79871280 Msa0930780:CDS
TGTTCAGGTTGCCTTGGCCA+AGG 0.418461 6_2:-79872296 Msa0930780:CDS
CGACTTGAGAATGATGTTAG+AGG 0.418672 6_2:-79873632 Msa0930780:intron
CTTTAGTTCTTTCAGAAGAC+TGG 0.425602 6_2:+79871093 None:intergenic
AAAAGCTCACCCAAACTGTC+AGG 0.427752 6_2:-79872054 Msa0930780:CDS
TCAAGATGATAACAGAGCTT+TGG 0.430655 6_2:-79872368 Msa0930780:CDS
GTCAGAAACCCATTAGAGTT+GGG 0.435909 6_2:+79871272 None:intergenic
GGTGACGCCGGTGCCGTTGA+CGG 0.437292 6_2:-79873783 Msa0930780:CDS
TGCCTTGGCCAAGGCCTCCA+TGG 0.440738 6_2:-79872287 Msa0930780:CDS
TGAGTTTGTGTATGAATGAA+TGG 0.447298 6_2:+79874107 None:intergenic
CTTCACATTGCTGAAACGCT+TGG 0.448038 6_2:+79870658 None:intergenic
AGGGAGAGATGCAGCAACTT+CGG 0.463109 6_2:-79871579 Msa0930780:CDS
TCTATATGTGTTTCTGTACA+AGG 0.465058 6_2:-79870449 Msa0930780:three_prime_UTR
CGATTAAGCTCCAGTTTCAC+TGG 0.465244 6_2:+79873653 None:intergenic
TTTCCCTTCCTTAAACGATC+CGG 0.468302 6_2:+79873757 None:intergenic
GGAGCTAGAATGGCTTCTAT+AGG 0.468769 6_2:+79872553 None:intergenic
CTTGCCATTAGTAGATATAG+AGG 0.469171 6_2:-79871018 Msa0930780:CDS
CGTCGGCGTAGGATAGCAAA+TGG 0.469860 6_2:+79874273 None:intergenic
AGCATTCTTCAAAATTGAGC+TGG 0.473860 6_2:+79871208 None:intergenic
GTTGCTGAGCACTGTTCATA+GGG 0.474288 6_2:+79870633 None:intergenic
CTGTAGTAGTGGCTAATGAA+TGG 0.479204 6_2:-79871781 Msa0930780:CDS
GTCGGCGTAGGATAGCAAAT+GGG 0.483006 6_2:+79874274 None:intergenic
GTATGATTTGCTGCAGAAAG+AGG 0.486051 6_2:-79870976 Msa0930780:CDS
AGGGAAAATGTGTTAGCAAT+GGG 0.489064 6_2:-79871340 Msa0930780:CDS
TGATGGTGGCTCTAGGTCAC+TGG 0.489643 6_2:-79871165 Msa0930780:CDS
AGTCAGAAACCCATTAGAGT+TGG 0.493992 6_2:+79871271 None:intergenic
CACCATGGAGGCCTTGGCCA+AGG 0.496680 6_2:+79872285 None:intergenic
GTCCTAGTGTTGAGGAAAGC+TGG 0.499161 6_2:-79870954 Msa0930780:CDS
AAGGACTGTTCAGGTTGCCT+TGG 0.499232 6_2:-79872302 Msa0930780:CDS
AGCCTCTAAAGGAGCTAGAA+TGG 0.499413 6_2:+79872543 None:intergenic
AACTCATCCGCATCCAAACT+AGG 0.505439 6_2:+79873701 None:intergenic
TGATAACGAGTTTGATAACA+TGG 0.509915 6_2:+79874200 None:intergenic
CTCAGCAACAGCTTGTTACT+GGG 0.513643 6_2:-79870619 Msa0930780:CDS
TTGAGGCAAAGAAGATGCGA+AGG 0.515230 6_2:-79870745 Msa0930780:CDS
CCGGAAACCGTCAACGGCAC+CGG 0.518335 6_2:+79873776 None:intergenic
TTCCACCCAGGGATTGTCGT+CGG 0.518701 6_2:+79871312 None:intergenic
AGGCTGAACTCAAGCTTGCT+CGG 0.519693 6_2:-79872525 Msa0930780:CDS
AGCTTGAGTTCAGCCTCTAA+AGG 0.520147 6_2:+79872532 None:intergenic
GGCATCAGTGAGATCGGCGA+TGG 0.521449 6_2:-79873843 Msa0930780:exon
TCCACCCAGGGATTGTCGTC+GGG 0.522810 6_2:+79871313 None:intergenic
AACTGCTGCAAACTAAATTC+AGG 0.526640 6_2:+79870407 None:intergenic
GACTGGTTAAACGACGAACT+TGG 0.527055 6_2:+79871110 None:intergenic
TATTAATCGCGGCACTTCAG+AGG 0.534381 6_2:-79871360 Msa0930780:CDS
GCATAGACTGAAGGTGGCAG+AGG 0.535525 6_2:-79872080 Msa0930780:CDS
GGATACATTGACCAAAGCTA+TGG 0.536322 6_2:-79870771 Msa0930780:CDS
AAGGGTCCATGCTGCTCAGA+AGG 0.536406 6_2:-79872590 Msa0930780:CDS
CCCAGGGATTGTCGTCGGGA+AGG 0.537826 6_2:+79871317 None:intergenic
GCGAAGGGAGGTAGCTGTCA+TGG 0.538751 6_2:-79870729 Msa0930780:CDS
CTTATAACACCTCTACAAGA+AGG 0.540610 6_2:-79874299 None:intergenic
CACAGAGGACCTTATTTGAA+AGG 0.541508 6_2:+79871235 None:intergenic
GAAACAGATTGAGATTTGCC+AGG 0.542161 6_2:-79872230 Msa0930780:intron
CAGCTGAAGCTACTCTTCGA+AGG 0.542966 6_2:-79872609 Msa0930780:CDS
CTACGCCGACGAACATTGCA+TGG 0.545731 6_2:-79874261 Msa0930780:five_prime_UTR
TAATTACTTGAAATAAACAT+TGG 0.546888 6_2:+79870473 None:intergenic
CGGTTCCATTCCCACGTCAC+CGG 0.547668 6_2:+79873811 None:intergenic
TTGCAGCAGCACCGCCTGCA+AGG 0.549043 6_2:+79872014 None:intergenic
CATGCAATGTTCGTCGGCGT+AGG 0.550422 6_2:+79874262 None:intergenic
ATTAATCGCGGCACTTCAGA+GGG 0.552798 6_2:-79871359 Msa0930780:CDS
TGAAAGAACTAAAGACAAAG+AGG 0.552858 6_2:-79871084 Msa0930780:CDS
CTTCCTTAGATTTCGTAAGA+CGG 0.553947 6_2:+79872344 None:intergenic
GAGGGAAAATGTGTTAGCAA+TGG 0.554350 6_2:-79871341 Msa0930780:CDS
CAGCACTTCTTGAAGCTGAA+AGG 0.556835 6_2:-79872321 Msa0930780:CDS
AGCAAATCATACAAAACTCC+TGG 0.558030 6_2:+79870987 None:intergenic
CCTTCCCGACGACAATCCCT+GGG 0.558801 6_2:-79871317 Msa0930780:CDS
TCGGGAGTTGGCTCGTGCCA+AGG 0.564508 6_2:-79871822 Msa0930780:CDS
CATTTGGATGTTCGTCTGAG+TGG 0.567631 6_2:-79873875 Msa0930780:five_prime_UTR
TATGCTATCTGTTCCACCCA+GGG 0.568259 6_2:+79871301 None:intergenic
AGATAAAGACGATGCCATTG+AGG 0.568782 6_2:-79870907 Msa0930780:intron
TTTCCGGATCGTTTAAGGAA+GGG 0.568827 6_2:-79873760 Msa0930780:CDS
AAACAGAGTAGCTGTAGTAG+TGG 0.569015 6_2:-79871792 Msa0930780:CDS
GGAACCGACGGTGGTGACGC+CGG 0.569709 6_2:-79873795 Msa0930780:CDS
GAGGAAAACAATAATTGGAA+AGG 0.570719 6_2:-79871065 Msa0930780:CDS
TGGTTAAACGACGAACTTGG+TGG 0.570824 6_2:+79871113 None:intergenic
GAGTGATTATGATTAAAGAA+AGG 0.572435 6_2:+79874060 None:intergenic
GTTTCCGGATCGTTTAAGGA+AGG 0.572546 6_2:-79873761 Msa0930780:CDS
GGAGGTAGCTGTCATGGAGA+AGG 0.573439 6_2:-79870723 Msa0930780:CDS
GACCAAAGCTATGGAAGTTG+AGG 0.577831 6_2:-79870762 Msa0930780:CDS
GGAGGTGGCTGCAATGCGCG+TGG 0.579154 6_2:-79870702 Msa0930780:CDS
AACGATCCGGAAACCGTCAA+CGG 0.580826 6_2:+79873770 None:intergenic
GATGAGACCTAGTTTGGATG+CGG 0.582124 6_2:-79873708 Msa0930780:CDS
AACTGTCAGGGAACTAGAGG+AGG 0.584056 6_2:-79872041 Msa0930780:CDS
AGCTGTCATGGAGAAGGAGG+TGG 0.586105 6_2:-79870717 Msa0930780:CDS
GCTAGAATGGCTTCTATAGG+AGG 0.588125 6_2:+79872556 None:intergenic
GAGGAGGCTGTCCTTGCAGG+CGG 0.590371 6_2:-79872025 Msa0930780:CDS
CGTCATCCTTCTGAGCAGCA+TGG 0.593027 6_2:+79872584 None:intergenic
ATTCTTCAAAATTGAGCTGG+AGG 0.593608 6_2:+79871211 None:intergenic
AAATGGGGCCCTTCTTGTAG+AGG 0.593712 6_2:+79874290 None:intergenic
GGTAGCTGTCATGGAGAAGG+AGG 0.598076 6_2:-79870720 Msa0930780:CDS
TGATGAAAAGAAAGCATCGA+TGG 0.599203 6_2:-79872644 Msa0930780:CDS
TTATAACACCTCTACAAGAA+GGG 0.607311 6_2:-79874298 None:intergenic
AGCTGAAGCTACTCTTCGAA+GGG 0.608327 6_2:-79872608 Msa0930780:CDS
GGACAGAATGCATAGACTGA+AGG 0.608459 6_2:-79872089 Msa0930780:CDS
CAGAATGCATAGACTGAAGG+TGG 0.610746 6_2:-79872086 Msa0930780:CDS
GCACTCCATGCAATGTTCGT+CGG 0.610987 6_2:+79874256 None:intergenic
GATAACGAGTTTGATAACAT+GGG 0.611587 6_2:+79874201 None:intergenic
ACTCAAGCTTGCTCGGCAAG+AGG 0.612136 6_2:-79872518 Msa0930780:intron
ATAACGAGTTTGATAACATG+GGG 0.617485 6_2:+79874202 None:intergenic
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 6_2:-79872284 Msa0930780:CDS
GGCACCGGCGTCACCACCGT+CGG 0.624819 6_2:+79873791 None:intergenic
GTGGCTCTAGGTCACTGGAA+AGG 0.628966 6_2:-79871160 Msa0930780:CDS
CCAAACTGTCAGGGAACTAG+AGG 0.629519 6_2:-79872044 Msa0930780:CDS
GACCAGCTTTCCTCAACACT+AGG 0.630129 6_2:+79870952 None:intergenic
GCTTACTGAAGAATTGTCGA+AGG 0.641029 6_2:-79872826 Msa0930780:CDS
ATATGCTATCTGTTCCACCC+AGG 0.641087 6_2:+79871300 None:intergenic
AAAGCTCACCCAAACTGTCA+GGG 0.642656 6_2:-79872053 Msa0930780:CDS
AGAAAGAGGTCCTAGTGTTG+AGG 0.642915 6_2:-79870962 Msa0930780:CDS
TCGGCGTAGGATAGCAAATG+GGG 0.649349 6_2:+79874275 None:intergenic
GGCAAAGAAGATGCGAAGGG+AGG 0.650499 6_2:-79870741 Msa0930780:CDS
TGAGGCAAAGAAGATGCGAA+GGG 0.652267 6_2:-79870744 Msa0930780:CDS
AAGTGATGCCTGTAAAACAA+TGG 0.658150 6_2:-79871742 Msa0930780:CDS
TGACGTGGGAATGGAACCGA+CGG 0.658829 6_2:-79873807 Msa0930780:CDS
AATTGAGCTGGAGGACACAG+AGG 0.682767 6_2:+79871220 None:intergenic
TTGGAGATCATCCACCATGG+AGG 0.693889 6_2:+79872273 None:intergenic
TCCCGACGACAATCCCTGGG+TGG 0.703158 6_2:-79871314 Msa0930780:CDS
AGCAACAGCTTGTTACTGGG+AGG 0.709426 6_2:-79870616 Msa0930780:CDS
ACTTCTAACAGTATTAATCG+CGG 0.716319 6_2:-79871371 Msa0930780:CDS
CGTGGGAATGGAACCGACGG+TGG 0.718391 6_2:-79873804 Msa0930780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTCTTACTAATTT+TGG - chr6_2:79871349-79871368 Msa0930780:CDS 10.0%
!! AAAAATCATTACAACAATTA+AGG + chr6_2:79871606-79871625 None:intergenic 15.0%
!! TGATTAATAAATTATGACAA+AGG + chr6_2:79871781-79871800 None:intergenic 15.0%
!! ATTCAAAATAGGAAAAAATA+AGG + chr6_2:79872220-79872239 None:intergenic 15.0%
!!! TTATTTTTTCCTATTTTGAA+TGG - chr6_2:79872219-79872238 Msa0930780:intron 15.0%
!! TAATTACTTGAAATAAACAT+TGG + chr6_2:79874233-79874252 None:intergenic 15.0%
!! AAATTAATATCACCAAACAA+TGG + chr6_2:79871461-79871480 None:intergenic 20.0%
!! TACAAAACCAACAAATAAAT+CGG + chr6_2:79871545-79871564 None:intergenic 20.0%
!!! ATTTTTTACCCAGTAATTAT+TGG - chr6_2:79871620-79871639 Msa0930780:intron 20.0%
!!! ATTTTCAAGCTAACAAATTA+AGG + chr6_2:79871828-79871847 None:intergenic 20.0%
!! ACAAAAAAGTTACATCATTA+TGG + chr6_2:79872550-79872569 None:intergenic 20.0%
!! TAAAATATGGAAACTGTTAA+AGG + chr6_2:79873087-79873106 None:intergenic 20.0%
!! GAATATGGTTCAATAAAATA+TGG + chr6_2:79873100-79873119 None:intergenic 20.0%
!!! TTTTTCCTGAAAATTGTAAA+AGG + chr6_2:79873270-79873289 None:intergenic 20.0%
!! TTCAGGAAAAATATCAATTA+CGG - chr6_2:79873279-79873298 Msa0930780:intron 20.0%
!! GGGTTTTTATCATTTAAACT+TGG + chr6_2:79870484-79870503 None:intergenic 25.0%
! GAGTGATTATGATTAAAGAA+AGG + chr6_2:79870646-79870665 None:intergenic 25.0%
!!! TTTTCGTTTTCGTTTGTTAA+CGG + chr6_2:79870674-79870693 None:intergenic 25.0%
! TGTTTCATACTACTAGTTAA+TGG + chr6_2:79870743-79870762 None:intergenic 25.0%
! TTTAATATCACATATGTACG+CGG - chr6_2:79871485-79871504 Msa0930780:intron 25.0%
!!! TAACCATCTGATCTTTTTTT+TGG + chr6_2:79871744-79871763 None:intergenic 25.0%
! TGATCTCCAAAATAAAAATC+AGG - chr6_2:79872443-79872462 Msa0930780:intron 25.0%
!!! TTAGCTCCTGATTTTTATTT+TGG + chr6_2:79872452-79872471 None:intergenic 25.0%
!!! TGATGTAACTTTTTTGTACT+TGG - chr6_2:79872553-79872572 Msa0930780:CDS 25.0%
! CAACAAAGGATTAAATACAA+AGG + chr6_2:79873035-79873054 None:intergenic 25.0%
! TTATTGAACCATATTCTTAC+AGG - chr6_2:79873104-79873123 Msa0930780:intron 25.0%
! TATTGAACCATATTCTTACA+GGG - chr6_2:79873105-79873124 Msa0930780:intron 25.0%
! CACAGTTAAAAGTAATAATC+TGG - chr6_2:79873187-79873206 Msa0930780:intron 25.0%
!! GTAAACCTTTTACAATTTTC+AGG - chr6_2:79873262-79873281 Msa0930780:intron 25.0%
!!! TCAATTTTGAAGAATGCTAA+AGG - chr6_2:79873500-79873519 Msa0930780:CDS 25.0%
! AGGAGTAAAATTCTTCTAAA+TGG - chr6_2:79873563-79873582 Msa0930780:intron 25.0%
! ACAAAGAGGAAAACAATAAT+TGG - chr6_2:79873633-79873652 Msa0930780:CDS 25.0%
! TTATCCTCTATATCTACTAA+TGG + chr6_2:79873692-79873711 None:intergenic 25.0%
! AAAAAGATTACTAACCTCAA+TGG + chr6_2:79873813-79873832 None:intergenic 25.0%
!! GTAATCTTTTTAAACCTGTT+TGG - chr6_2:79873822-79873841 Msa0930780:CDS 25.0%
! ACTAAGATTAAAATCCAAAC+AGG + chr6_2:79873839-79873858 None:intergenic 25.0%
! ACAATTAACTAAGATTGCAA+TGG + chr6_2:79873873-79873892 None:intergenic 25.0%
! ATCTTAGTTAATTGTTGCAA+TGG - chr6_2:79873878-79873897 Msa0930780:five_prime_UTR 25.0%
! ATAACGAGTTTGATAACATG+GGG + chr6_2:79870504-79870523 None:intergenic 30.0%
! GATAACGAGTTTGATAACAT+GGG + chr6_2:79870505-79870524 None:intergenic 30.0%
! TGATAACGAGTTTGATAACA+TGG + chr6_2:79870506-79870525 None:intergenic 30.0%
TGAGTTTGTGTATGAATGAA+TGG + chr6_2:79870599-79870618 None:intergenic 30.0%
!!! CTTTTTTACAAGCCATTGTT+TGG - chr6_2:79871446-79871465 Msa0930780:intron 30.0%
ATTAAGCGCCAATAATTACT+GGG + chr6_2:79871631-79871650 None:intergenic 30.0%
TGCATTGTTTATAGATCAGA+TGG - chr6_2:79871686-79871705 Msa0930780:intron 30.0%
TTTATAGATCAGATGGTTAC+TGG - chr6_2:79871693-79871712 Msa0930780:intron 30.0%
CAGAAACTACCATTCAAAAT+AGG + chr6_2:79872231-79872250 None:intergenic 30.0%
TAGTTTCTGTGTGAAAATAC+CGG - chr6_2:79872242-79872261 Msa0930780:CDS 30.0%
CATAAAAGATTGCAAATACC+TGG + chr6_2:79872494-79872513 None:intergenic 30.0%
!!! CAAAATTTTGTTTTCCTCCT+GGG + chr6_2:79872595-79872614 None:intergenic 30.0%
! TCTAGTTAAGAGTTTTTGCA+TGG - chr6_2:79872821-79872840 Msa0930780:CDS 30.0%
! CTAGTTAAGAGTTTTTGCAT+GGG - chr6_2:79872822-79872841 Msa0930780:CDS 30.0%
AAGAAAGAAAAACTCTCGAT+CGG - chr6_2:79872862-79872881 Msa0930780:intron 30.0%
ACTTAAAGACAAAGCAACAA+AGG + chr6_2:79873049-79873068 None:intergenic 30.0%
AAAAGGTTTACCTTGAGTAA+TGG + chr6_2:79873253-79873272 None:intergenic 30.0%
ACTTCTAACAGTATTAATCG+CGG - chr6_2:79873332-79873351 Msa0930780:intron 30.0%
GAACATCATCCTTTCAAATA+AGG - chr6_2:79873459-79873478 Msa0930780:intron 30.0%
TGAAAGAACTAAAGACAAAG+AGG - chr6_2:79873619-79873638 Msa0930780:intron 30.0%
GAGGAAAACAATAATTGGAA+AGG - chr6_2:79873638-79873657 Msa0930780:CDS 30.0%
CAATAATTGGAAAGGAAGTT+TGG - chr6_2:79873646-79873665 Msa0930780:CDS 30.0%
! GGTACTTCTTTTTCTCTTTT+TGG - chr6_2:79874108-79874127 Msa0930780:five_prime_UTR 30.0%
!!! CTTGCTTTTTTTCTGAAACT+AGG - chr6_2:79874169-79874188 Msa0930780:five_prime_UTR 30.0%
! TCTATATGTGTTTCTGTACA+AGG - chr6_2:79874254-79874273 Msa0930780:five_prime_UTR 30.0%
CTTTGTGTATTCGTAGCATT+TGG - chr6_2:79870812-79870831 Msa0930780:intron 35.0%
GTTCTATGTGTTTGCAGATA+AGG - chr6_2:79871162-79871181 Msa0930780:CDS 35.0%
TAGAGAAAAAGCTGTTGAAG+AGG - chr6_2:79871243-79871262 Msa0930780:CDS 35.0%
CCAAAATTATCATGCCGTTA+CGG - chr6_2:79871313-79871332 Msa0930780:CDS 35.0%
ATGTACGCGGTAATTATGTT+TGG - chr6_2:79871498-79871517 Msa0930780:intron 35.0%
TGTACGCGGTAATTATGTTT+GGG - chr6_2:79871499-79871518 Msa0930780:intron 35.0%
TTATGTTTGGGCTGAATTAC+AGG - chr6_2:79871511-79871530 Msa0930780:intron 35.0%
TATGTTTGGGCTGAATTACA+GGG - chr6_2:79871512-79871531 Msa0930780:intron 35.0%
GATTAAGCGCCAATAATTAC+TGG + chr6_2:79871632-79871651 None:intergenic 35.0%
!!! TCTGATCTTTTTTTTGGTGG+TGG + chr6_2:79871738-79871757 None:intergenic 35.0%
!!! CCATCTGATCTTTTTTTTGG+TGG + chr6_2:79871741-79871760 None:intergenic 35.0%
CCACCAAAAAAAAGATCAGA+TGG - chr6_2:79871738-79871757 Msa0930780:CDS 35.0%
! CTAGAAAGCAAAGTATTTCC+TGG - chr6_2:79871932-79871951 Msa0930780:intron 35.0%
ACATCTCTAACGTTTGATAG+AGG + chr6_2:79871960-79871979 None:intergenic 35.0%
GTAAACACATCACAACATGA+AGG + chr6_2:79871996-79872015 None:intergenic 35.0%
!! TGATGAAAAGAAAGCATCGA+TGG - chr6_2:79872059-79872078 Msa0930780:CDS 35.0%
! TGTGTGAAAATACCGGTTAA+AGG - chr6_2:79872249-79872268 Msa0930780:CDS 35.0%
! GTGTGAAAATACCGGTTAAA+GGG - chr6_2:79872250-79872269 Msa0930780:CDS 35.0%
TCAAGATGATAACAGAGCTT+TGG - chr6_2:79872335-79872354 Msa0930780:CDS 35.0%
CTTCCTTAGATTTCGTAAGA+CGG + chr6_2:79872362-79872381 None:intergenic 35.0%
!!! CCAAAATTTTGTTTTCCTCC+TGG + chr6_2:79872596-79872615 None:intergenic 35.0%
! CCAGGAGGAAAACAAAATTT+TGG - chr6_2:79872593-79872612 Msa0930780:CDS 35.0%
AAAATCAAGAGTGAAGCAAC+TGG + chr6_2:79872787-79872806 None:intergenic 35.0%
AGAAAGAAAAACTCTCGATC+GGG - chr6_2:79872863-79872882 Msa0930780:intron 35.0%
AAGTGATGCCTGTAAAACAA+TGG - chr6_2:79872961-79872980 Msa0930780:intron 35.0%
!! TCTTCAAGCCATTGTTTTAC+AGG + chr6_2:79872972-79872991 None:intergenic 35.0%
CAACCTGCATGTATTAACTT+AGG - chr6_2:79873215-79873234 Msa0930780:intron 35.0%
TCTCCTAAGTTAATACATGC+AGG + chr6_2:79873221-79873240 None:intergenic 35.0%
ATAAGTTCTGCCATTACTCA+AGG - chr6_2:79873240-79873259 Msa0930780:intron 35.0%
AGGGAAAATGTGTTAGCAAT+GGG - chr6_2:79873363-79873382 Msa0930780:intron 35.0%
ATATCCAAACCCAACTCTAA+TGG - chr6_2:79873422-79873441 Msa0930780:intron 35.0%
TATCCAAACCCAACTCTAAT+GGG - chr6_2:79873423-79873442 Msa0930780:intron 35.0%
ATTCTTCAAAATTGAGCTGG+AGG + chr6_2:79873495-79873514 None:intergenic 35.0%
AGCATTCTTCAAAATTGAGC+TGG + chr6_2:79873498-79873517 None:intergenic 35.0%
!! CTTTAGTTCTTTCAGAAGAC+TGG + chr6_2:79873613-79873632 None:intergenic 35.0%
TCTACTAATGGCAAGTCATT+TGG + chr6_2:79873680-79873699 None:intergenic 35.0%
CTTGCCATTAGTAGATATAG+AGG - chr6_2:79873685-79873704 Msa0930780:CDS 35.0%
GATATAGAGGATAATGTTCC+AGG - chr6_2:79873698-79873717 Msa0930780:CDS 35.0%
AGCAAATCATACAAAACTCC+TGG + chr6_2:79873719-79873738 None:intergenic 35.0%
! TGGCATCGTCTTTATCTTTT+AGG + chr6_2:79873793-79873812 None:intergenic 35.0%
! CTTTCTCTGTCACACAGTTT+TGG - chr6_2:79870553-79870572 Msa0930780:CDS 40.0%
TTTCCGGATCGTTTAAGGAA+GGG - chr6_2:79870943-79870962 Msa0930780:CDS 40.0%
TTTCCCTTCCTTAAACGATC+CGG + chr6_2:79870949-79870968 None:intergenic 40.0%
! GAGTTCATGAACTTGCTTCA+TGG - chr6_2:79871020-79871039 Msa0930780:CDS 40.0%
! CATGAACTTGCTTCATGGTT+CGG - chr6_2:79871025-79871044 Msa0930780:CDS 40.0%
CGACTTGAGAATGATGTTAG+AGG - chr6_2:79871071-79871090 Msa0930780:CDS 40.0%
! CCGTAACGGCATGATAATTT+TGG + chr6_2:79871316-79871335 None:intergenic 40.0%
ATTATCATGCCGTTACGGTT+AGG - chr6_2:79871318-79871337 Msa0930780:CDS 40.0%
TCGCAAAATCCTAACCGTAA+CGG + chr6_2:79871330-79871349 None:intergenic 40.0%
!!! ATCTTTTTTTTGGTGGTGGC+CGG + chr6_2:79871734-79871753 None:intergenic 40.0%
GCTTACTGAAGAATTGTCGA+AGG - chr6_2:79871877-79871896 Msa0930780:intron 40.0%
GAAGAATTGTCGAAGGTAGA+TGG - chr6_2:79871884-79871903 Msa0930780:intron 40.0%
GCAATCTGCAAGAAACAAGT+CGG + chr6_2:79872309-79872328 None:intergenic 40.0%
!! ATTTTGGAGATCATCCACCA+TGG + chr6_2:79872436-79872455 None:intergenic 40.0%
GAAACAGATTGAGATTTGCC+AGG - chr6_2:79872473-79872492 Msa0930780:intron 40.0%
!! CATGGGCTGTTTGACATTTT+AGG - chr6_2:79872839-79872858 Msa0930780:intron 40.0%
!! TACTCTGTTTGCTGTTACCT+TGG + chr6_2:79872901-79872920 None:intergenic 40.0%
AAACAGAGTAGCTGTAGTAG+TGG - chr6_2:79872911-79872930 Msa0930780:intron 40.0%
CTGTAGTAGTGGCTAATGAA+TGG - chr6_2:79872922-79872941 Msa0930780:intron 40.0%
CATCTCTCCCTGTAAGAATA+TGG + chr6_2:79873115-79873134 None:intergenic 40.0%
GAGGGAAAATGTGTTAGCAA+TGG - chr6_2:79873362-79873381 Msa0930780:intron 40.0%
AAACCCATTAGAGTTGGGTT+TGG + chr6_2:79873429-79873448 None:intergenic 40.0%
GTCAGAAACCCATTAGAGTT+GGG + chr6_2:79873434-79873453 None:intergenic 40.0%
AGTCAGAAACCCATTAGAGT+TGG + chr6_2:79873435-79873454 None:intergenic 40.0%
! CACAGAGGACCTTATTTGAA+AGG + chr6_2:79873471-79873490 None:intergenic 40.0%
! GCATCTAAGTCTTTTGATGG+TGG - chr6_2:79873524-79873543 Msa0930780:CDS 40.0%
!! GTATGATTTGCTGCAGAAAG+AGG - chr6_2:79873727-79873746 Msa0930780:CDS 40.0%
AGATAAAGACGATGCCATTG+AGG - chr6_2:79873796-79873815 Msa0930780:CDS 40.0%
!!! CCACTTTTTTTGCTAGCATC+TGG + chr6_2:79873914-79873933 None:intergenic 40.0%
CCAGATGCTAGCAAAAAAAG+TGG - chr6_2:79873911-79873930 Msa0930780:five_prime_UTR 40.0%
GGATACATTGACCAAAGCTA+TGG - chr6_2:79873932-79873951 Msa0930780:five_prime_UTR 40.0%
CATTTGGATGTTCGTCTGAG+TGG - chr6_2:79870828-79870847 Msa0930780:intron 45.0%
! TCGTCTGAGTGGTTTCGTTT+TGG - chr6_2:79870839-79870858 Msa0930780:intron 45.0%
!! CGTTTTGGCATCAGTGAGAT+CGG - chr6_2:79870854-79870873 Msa0930780:intron 45.0%
GTTTCCGGATCGTTTAAGGA+AGG - chr6_2:79870942-79870961 Msa0930780:CDS 45.0%
GCATTCGATGAGACCTAGTT+TGG - chr6_2:79870989-79871008 Msa0930780:CDS 45.0%
GATGAGACCTAGTTTGGATG+CGG - chr6_2:79870995-79871014 Msa0930780:CDS 45.0%
AACTCATCCGCATCCAAACT+AGG + chr6_2:79871005-79871024 None:intergenic 45.0%
CGATTAAGCTCCAGTTTCAC+TGG + chr6_2:79871053-79871072 None:intergenic 45.0%
! CCAACAAATAAATCGGCTCC+CGG + chr6_2:79871538-79871557 None:intergenic 45.0%
AGATCAGATGGTTACTGGTC+CGG - chr6_2:79871698-79871717 Msa0930780:intron 45.0%
!!! TCTTTTTTTTGGTGGTGGCC+GGG + chr6_2:79871733-79871752 None:intergenic 45.0%
TAACGTTTGATAGAGGCTCC+AGG + chr6_2:79871953-79871972 None:intergenic 45.0%
AGCTGAAGCTACTCTTCGAA+GGG - chr6_2:79872095-79872114 Msa0930780:CDS 45.0%
GCTAGAATGGCTTCTATAGG+AGG + chr6_2:79872150-79872169 None:intergenic 45.0%
GGAGCTAGAATGGCTTCTAT+AGG + chr6_2:79872153-79872172 None:intergenic 45.0%
!! AGCCATTCTAGCTCCTTTAG+AGG - chr6_2:79872158-79872177 Msa0930780:intron 45.0%
! AGCCTCTAAAGGAGCTAGAA+TGG + chr6_2:79872163-79872182 None:intergenic 45.0%
AGCTTGAGTTCAGCCTCTAA+AGG + chr6_2:79872174-79872193 None:intergenic 45.0%
GGACCGTCTTACGAAATCTA+AGG - chr6_2:79872356-79872375 Msa0930780:CDS 45.0%
CAGCACTTCTTGAAGCTGAA+AGG - chr6_2:79872382-79872401 Msa0930780:CDS 45.0%
TGAAGCTGAAAGGACTGTTC+AGG - chr6_2:79872392-79872411 Msa0930780:intron 45.0%
!!! TTTTGTTTTCCTCCTGGGAG+AGG + chr6_2:79872590-79872609 None:intergenic 45.0%
GGACAGAATGCATAGACTGA+AGG - chr6_2:79872614-79872633 Msa0930780:CDS 45.0%
CAGAATGCATAGACTGAAGG+TGG - chr6_2:79872617-79872636 Msa0930780:CDS 45.0%
AAAAGCTCACCCAAACTGTC+AGG - chr6_2:79872649-79872668 Msa0930780:CDS 45.0%
AAAGCTCACCCAAACTGTCA+GGG - chr6_2:79872650-79872669 Msa0930780:CDS 45.0%
! CTCTAGTTCCCTGACAGTTT+GGG + chr6_2:79872661-79872680 None:intergenic 45.0%
CAAGAGTGAAGCAACTGGAA+AGG + chr6_2:79872782-79872801 None:intergenic 45.0%
AAAAACTCTCGATCGGGAGT+TGG - chr6_2:79872869-79872888 Msa0930780:intron 45.0%
TATTAATCGCGGCACTTCAG+AGG - chr6_2:79873343-79873362 Msa0930780:intron 45.0%
ATTAATCGCGGCACTTCAGA+GGG - chr6_2:79873344-79873363 Msa0930780:intron 45.0%
TATGCTATCTGTTCCACCCA+GGG + chr6_2:79873405-79873424 None:intergenic 45.0%
ATATGCTATCTGTTCCACCC+AGG + chr6_2:79873406-79873425 None:intergenic 45.0%
! GGCGCATCTAAGTCTTTTGA+TGG - chr6_2:79873521-79873540 Msa0930780:CDS 45.0%
!!! AGTCTTTTGATGGTGGCTCT+AGG - chr6_2:79873531-79873550 Msa0930780:intron 45.0%
TGGTTAAACGACGAACTTGG+TGG + chr6_2:79873593-79873612 None:intergenic 45.0%
! GACTGGTTAAACGACGAACT+TGG + chr6_2:79873596-79873615 None:intergenic 45.0%
AGAAAGAGGTCCTAGTGTTG+AGG - chr6_2:79873741-79873760 Msa0930780:CDS 45.0%
GACCAAAGCTATGGAAGTTG+AGG - chr6_2:79873941-79873960 Msa0930780:five_prime_UTR 45.0%
TGCCTCAACTTCCATAGCTT+TGG + chr6_2:79873946-79873965 None:intergenic 45.0%
TTGAGGCAAAGAAGATGCGA+AGG - chr6_2:79873958-79873977 Msa0930780:five_prime_UTR 45.0%
TGAGGCAAAGAAGATGCGAA+GGG - chr6_2:79873959-79873978 Msa0930780:five_prime_UTR 45.0%
CTTCACATTGCTGAAACGCT+TGG + chr6_2:79874048-79874067 None:intergenic 45.0%
! GTTGCTGAGCACTGTTCATA+GGG + chr6_2:79874073-79874092 None:intergenic 45.0%
! TGTTGCTGAGCACTGTTCAT+AGG + chr6_2:79874074-79874093 None:intergenic 45.0%
!! CTCAGCAACAGCTTGTTACT+GGG - chr6_2:79874084-79874103 Msa0930780:five_prime_UTR 45.0%
!! AGAAAATAAATAAAAAATTA+AGG + chr6_2:79871575-79871594 None:intergenic 5.0%
AAATGGGGCCCTTCTTGTAG+AGG + chr6_2:79870416-79870435 None:intergenic 50.0%
TCGGCGTAGGATAGCAAATG+GGG + chr6_2:79870431-79870450 None:intergenic 50.0%
GTCGGCGTAGGATAGCAAAT+GGG + chr6_2:79870432-79870451 None:intergenic 50.0%
GCACTCCATGCAATGTTCGT+CGG + chr6_2:79870450-79870469 None:intergenic 50.0%
! TCGGCGATGGCTGAATTTTC+CGG - chr6_2:79870873-79870892 Msa0930780:intron 50.0%
! GCTGAATTTTCCGGTGACGT+GGG - chr6_2:79870882-79870901 Msa0930780:intron 50.0%
! ATTTTCCGGTGACGTGGGAA+TGG - chr6_2:79870887-79870906 Msa0930780:intron 50.0%
AACGATCCGGAAACCGTCAA+CGG + chr6_2:79870936-79870955 None:intergenic 50.0%
GACGGTTTCCGGATCGTTTA+AGG - chr6_2:79870938-79870957 Msa0930780:CDS 50.0%
! TGGTTCGGATCCAGTGAAAC+TGG - chr6_2:79871040-79871059 Msa0930780:CDS 50.0%
TTTGGGCTGAATTACAGGGC+CGG - chr6_2:79871516-79871535 Msa0930780:intron 50.0%
! CCGGGAGCCGATTTATTTGT+TGG - chr6_2:79871535-79871554 Msa0930780:CDS 50.0%
GATCAGATGGTTACTGGTCC+GGG - chr6_2:79871699-79871718 Msa0930780:intron 50.0%
CAGCTGAAGCTACTCTTCGA+AGG - chr6_2:79872094-79872113 Msa0930780:CDS 50.0%
! AGGCTGAACTCAAGCTTGCT+CGG - chr6_2:79872178-79872197 Msa0930780:intron 50.0%
!! ATACCGGTTAAAGGGCACTG+AGG - chr6_2:79872258-79872277 Msa0930780:CDS 50.0%
!! AAGGACTGTTCAGGTTGCCT+TGG - chr6_2:79872401-79872420 Msa0930780:intron 50.0%
TTGGAGATCATCCACCATGG+AGG + chr6_2:79872433-79872452 None:intergenic 50.0%
! CCTCTAGTTCCCTGACAGTT+TGG + chr6_2:79872662-79872681 None:intergenic 50.0%
CCAAACTGTCAGGGAACTAG+AGG - chr6_2:79872659-79872678 Msa0930780:CDS 50.0%
AACTGTCAGGGAACTAGAGG+AGG - chr6_2:79872662-79872681 Msa0930780:CDS 50.0%
TGAAGAGCGACGATTCTTGC+AGG - chr6_2:79872986-79873005 Msa0930780:intron 50.0%
AGGGAGAGATGCAGCAACTT+CGG - chr6_2:79873124-79873143 Msa0930780:intron 50.0%
AATTGAGCTGGAGGACACAG+AGG + chr6_2:79873486-79873505 None:intergenic 50.0%
! GTCCTAGTGTTGAGGAAAGC+TGG - chr6_2:79873749-79873768 Msa0930780:CDS 50.0%
GACCAGCTTTCCTCAACACT+AGG + chr6_2:79873754-79873773 None:intergenic 50.0%
!! GCTCAGCAACAGCTTGTTAC+TGG - chr6_2:79874083-79874102 Msa0930780:five_prime_UTR 50.0%
!! AGCAACAGCTTGTTACTGGG+AGG - chr6_2:79874087-79874106 Msa0930780:five_prime_UTR 50.0%
CGTCGGCGTAGGATAGCAAA+TGG + chr6_2:79870433-79870452 None:intergenic 55.0%
CATGCAATGTTCGTCGGCGT+AGG + chr6_2:79870444-79870463 None:intergenic 55.0%
CTACGCCGACGAACATTGCA+TGG - chr6_2:79870442-79870461 Msa0930780:three_prime_UTR 55.0%
! GGCTGAATTTTCCGGTGACG+TGG - chr6_2:79870881-79870900 Msa0930780:intron 55.0%
TGACGTGGGAATGGAACCGA+CGG - chr6_2:79870896-79870915 Msa0930780:intron 55.0%
TTGGGCTGAATTACAGGGCC+GGG - chr6_2:79871517-79871536 Msa0930780:intron 55.0%
CTGGTCCGGGATTCAAATCC+CGG - chr6_2:79871712-79871731 Msa0930780:intron 55.0%
AAGGGTCCATGCTGCTCAGA+AGG - chr6_2:79872113-79872132 Msa0930780:intron 55.0%
CGTCATCCTTCTGAGCAGCA+TGG + chr6_2:79872122-79872141 None:intergenic 55.0%
! ACTCAAGCTTGCTCGGCAAG+AGG - chr6_2:79872185-79872204 Msa0930780:intron 55.0%
CAGCCTCAGTGCCCTTTAAC+CGG + chr6_2:79872264-79872283 None:intergenic 55.0%
!! TGTTCAGGTTGCCTTGGCCA+AGG - chr6_2:79872407-79872426 Msa0930780:intron 55.0%
ATCATCCACCATGGAGGCCT+TGG + chr6_2:79872427-79872446 None:intergenic 55.0%
GTATCACCATCACCTCTCCC+AGG - chr6_2:79872575-79872594 Msa0930780:CDS 55.0%
TTTCCTCCTGGGAGAGGTGA+TGG + chr6_2:79872584-79872603 None:intergenic 55.0%
GCATAGACTGAAGGTGGCAG+AGG - chr6_2:79872623-79872642 Msa0930780:CDS 55.0%
AGAGCGACGATTCTTGCAGG+TGG - chr6_2:79872989-79873008 Msa0930780:intron 55.0%
GGGAGAGATGCAGCAACTTC+GGG - chr6_2:79873125-79873144 Msa0930780:intron 55.0%
TTCCACCCAGGGATTGTCGT+CGG + chr6_2:79873394-79873413 None:intergenic 55.0%
!! TGATGGTGGCTCTAGGTCAC+TGG - chr6_2:79873538-79873557 Msa0930780:intron 55.0%
!! GTGGCTCTAGGTCACTGGAA+AGG - chr6_2:79873543-79873562 Msa0930780:intron 55.0%
GGCAAAGAAGATGCGAAGGG+AGG - chr6_2:79873962-79873981 Msa0930780:five_prime_UTR 55.0%
GGAGGTAGCTGTCATGGAGA+AGG - chr6_2:79873980-79873999 Msa0930780:five_prime_UTR 55.0%
GGTAGCTGTCATGGAGAAGG+AGG - chr6_2:79873983-79874002 Msa0930780:five_prime_UTR 55.0%
AGCTGTCATGGAGAAGGAGG+TGG - chr6_2:79873986-79874005 Msa0930780:five_prime_UTR 55.0%
GGCATCAGTGAGATCGGCGA+TGG - chr6_2:79870860-79870879 Msa0930780:intron 60.0%
CGGTTCCATTCCCACGTCAC+CGG + chr6_2:79870895-79870914 None:intergenic 60.0%
GGTGGCCGGGATTTGAATCC+CGG + chr6_2:79871720-79871739 None:intergenic 60.0%
!! CGGTTAAAGGGCACTGAGGC+TGG - chr6_2:79872262-79872281 Msa0930780:CDS 60.0%
TCACCATCACCTCTCCCAGG+AGG - chr6_2:79872578-79872597 Msa0930780:CDS 60.0%
CTAGAGGAGGCTGTCCTTGC+AGG - chr6_2:79872675-79872694 Msa0930780:intron 60.0%
CCTTCCCGACGACAATCCCT+GGG - chr6_2:79873386-79873405 Msa0930780:intron 60.0%
TCCACCCAGGGATTGTCGTC+GGG + chr6_2:79873393-79873412 None:intergenic 60.0%
GCGAAGGGAGGTAGCTGTCA+TGG - chr6_2:79873974-79873993 Msa0930780:five_prime_UTR 60.0%
CGTGGGAATGGAACCGACGG+TGG - chr6_2:79870899-79870918 Msa0930780:intron 65.0%
CCGGAAACCGTCAACGGCAC+CGG + chr6_2:79870930-79870949 None:intergenic 65.0%
!! CCGGTGCCGTTGACGGTTTC+CGG - chr6_2:79870927-79870946 Msa0930780:CDS 65.0%
TGCCTTGGCCAAGGCCTCCA+TGG - chr6_2:79872416-79872435 Msa0930780:intron 65.0%
CACCATGGAGGCCTTGGCCA+AGG + chr6_2:79872421-79872440 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG - chr6_2:79872419-79872438 Msa0930780:intron 65.0%
GAGGAGGCTGTCCTTGCAGG+CGG - chr6_2:79872678-79872697 Msa0930780:intron 65.0%
TTGCAGCAGCACCGCCTGCA+AGG + chr6_2:79872692-79872711 None:intergenic 65.0%
!! TCGGGAGTTGGCTCGTGCCA+AGG - chr6_2:79872881-79872900 Msa0930780:intron 65.0%
GCCTTCCCGACGACAATCCC+TGG - chr6_2:79873385-79873404 Msa0930780:intron 65.0%
CCCAGGGATTGTCGTCGGGA+AGG + chr6_2:79873389-79873408 None:intergenic 65.0%
TCCCGACGACAATCCCTGGG+TGG - chr6_2:79873389-79873408 Msa0930780:intron 65.0%
! GGAACCGACGGTGGTGACGC+CGG - chr6_2:79870908-79870927 Msa0930780:CDS 70.0%
!! GGTGACGCCGGTGCCGTTGA+CGG - chr6_2:79870920-79870939 Msa0930780:CDS 70.0%
GGAGGTGGCTGCAATGCGCG+TGG - chr6_2:79874001-79874020 Msa0930780:five_prime_UTR 70.0%
!! GGCACCGGCGTCACCACCGT+CGG + chr6_2:79870915-79870934 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79870412 79874313 79870412 ID=Msa0930780;Name=Msa0930780
chr6_2 mRNA 79870412 79874313 79870412 ID=Msa0930780-mRNA-1;Parent=Msa0930780;Name=Msa0930780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=467|1|1|1|1|1|10|129|628
chr6_2 exon 79870412 79870810 79870412 ID=Msa0930780-mRNA-1:exon:13892;Parent=Msa0930780-mRNA-1
chr6_2 exon 79870908 79871441 79870908 ID=Msa0930780-mRNA-1:exon:13891;Parent=Msa0930780-mRNA-1
chr6_2 exon 79871528 79871599 79871528 ID=Msa0930780-mRNA-1:exon:13890;Parent=Msa0930780-mRNA-1
chr6_2 exon 79871718 79871864 79871718 ID=Msa0930780-mRNA-1:exon:13889;Parent=Msa0930780-mRNA-1
chr6_2 exon 79871973 79872128 79871973 ID=Msa0930780-mRNA-1:exon:13888;Parent=Msa0930780-mRNA-1
chr6_2 exon 79872231 79872401 79872231 ID=Msa0930780-mRNA-1:exon:13887;Parent=Msa0930780-mRNA-1
chr6_2 exon 79872519 79872689 79872519 ID=Msa0930780-mRNA-1:exon:13886;Parent=Msa0930780-mRNA-1
chr6_2 exon 79872782 79872847 79872782 ID=Msa0930780-mRNA-1:exon:13885;Parent=Msa0930780-mRNA-1
chr6_2 exon 79873461 79873546 79873461 ID=Msa0930780-mRNA-1:exon:13884;Parent=Msa0930780-mRNA-1
chr6_2 exon 79873633 79874313 79873633 ID=Msa0930780-mRNA-1:exon:13883;Parent=Msa0930780-mRNA-1
chr6_2 five_prime_UTR 79873847 79874313 79873847 ID=Msa0930780-mRNA-1:five_prime_utr;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79873633 79873846 79873633 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79873461 79873546 79873461 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79872782 79872847 79872782 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79872519 79872689 79872519 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79872231 79872401 79872231 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79871973 79872128 79871973 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79871718 79871864 79871718 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79871528 79871599 79871528 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79870908 79871441 79870908 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 CDS 79870541 79870810 79870541 ID=Msa0930780-mRNA-1:cds;Parent=Msa0930780-mRNA-1
chr6_2 three_prime_UTR 79870412 79870540 79870412 ID=Msa0930780-mRNA-1:three_prime_utr;Parent=Msa0930780-mRNA-1
Gene Sequence

>Msa0930780

ATGGCTGAATTTTCCGGTGACGTGGGAATGGAACCGACGGTGGTGACGCCGGTGCCGTTGACGGTTTCCGGATCGTTTAAGGAAGGGAAAAACTCATCACGAAGACGTACGCATTCGATGAGACCTAGTTTGGATGCGGATGAGTTCATGAACTTGCTTCATGGTTCGGATCCAGTGAAACTGGAGCTTAATCGACTTGAGAATGATGTTAGAGATAAGGATAGAGAATTATCAGAAGCACAAGCAGAGATCAAAGCGTTGAAACACTCTGAAAGACTTAGAGAAAAAGCTGTTGAAGAGCTTACTGAAGAATTGTCGAAGGTAGATGGAAAGCTGAAGTTTACAGAAAATCTTCTAGAAAGCAAAAATCTCGAAATAAAGAAAATCAATGATGAAAAGAAAGCATCGATGGCAGCTCAGTTTGCAGCTGAAGCTACTCTTCGAAGGGTCCATGCTGCTCAGAAGGATGACGACATGCCTCCTATAGAAGCCATTCTAGCTCCTTTAGAGGCTGAACTCAAGCTTGCTCGGCAAGAGATTGCTAAACTTCAAGATGATAACAGAGCTTTGGACCGTCTTACGAAATCTAAGGAAGCAGCACTTCTTGAAGCTGAAAGGACTGTTCAGGTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAGGAGCTAATGAAACAGATTGAGATTTGCCAGGAGGAAAACAAAATTTTGGACAGAATGCATAGACTGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTCAGGGAACTAGAGGAGGCTGTCCTTGCAGGCGGTGCTGCTGCAAATGCTGTGAGAGATTATCAGCGAAAATTTCAAGAAATGAATGAAGAAAGAAAAACTCTCGATCGGGAGTTGGCTCGTGCCAAGGTAACAGCAAACAGAGTAGCTGTAGTAGTGGCTAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTAAAACAATGGCTTGAAGAGCGACGATTCTTGCAGGGAGAGATGCAGCAACTTCGGGATAAGCTTGCTATATCTGATCGCACTGCAAAGTATGAAGCACAGTTAAAAGAAAAATATCAATTACGGCTTAAAGTGCTACAAGAGAGTTTGAGAGAAACTTCTAACAGTATTAATCGCGGCACTTCAGAGGGAAAATGTGTTAGCAATGGGCCTTCCCGACGACAATCCCTGGGTGGAACAGATAGCATATCCAAACCCAACTCTAATGGGTTTCTGACTAAGAGAACATCATCCTTTCAAATAAGGTCCTCTGTGTCCTCCAGCTCAATTTTGAAGAATGCTAAAGGCGCATCTAAGTCTTTTGATGGTGGCTCTAGGTCACTGGAAAGGAGTAAAATTCTTCTAAATGGAAAGCCACCAAGTTCGTCGTTTAACCAGTCTTCTGAAAGAACTAAAGACAAAGAGGAAAACAATAATTGGAAAGGAAGTTTGGATGATAAGCCAAATGACTTGCCATTAGTAGATATAGAGGATAATGTTCCAGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCCTAGTGTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGACGATGCCATTGAGATGCTAGCAAAAAAAGTGGATACATTGACCAAAGCTATGGAAGTTGAGGCAAAGAAGATGCGAAGGGAGGTAGCTGTCATGGAGAAGGAGGTGGCTGCAATGCGCGTGGACAAAGAACAAGAGACAAAAGCCAAGCGTTTCAGCAATGTGAAGAGCCCTATGAACAGTGCTCAGCAACAGCTTGTTACTGGGAGGTACTTCTTTTTCTCTTTTTGGTCACATTGCTGTGCTTTTTATTCAATGAAGTACTATAGCTTGCTTTTTTTCTGA

Protein sequence

>Msa0930780

MAEFSGDVGMEPTVVTPVPLTVSGSFKEGKNSSRRRTHSMRPSLDADEFMNLLHGSDPVKLELNRLENDVRDKDRELSEAQAEIKALKHSERLREKAVEELTEELSKVDGKLKFTENLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISDRTAKYEAQLKEKYQLRLKVLQESLRETSNSINRGTSEGKCVSNGPSRRQSLGGTDSISKPNSNGFLTKRTSSFQIRSSVSSSSILKNAKGASKSFDGGSRSLERSKILLNGKPPSSSFNQSSERTKDKEENNNWKGSLDDKPNDLPLVDIEDNVPGVLYDLLQKEVLVLRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAVMEKEVAAMRVDKEQETKAKRFSNVKSPMNSAQQQLVTGRYFFFSFWSHCCAFYSMKYYSLLFF*