AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459180 MtrunA17_Chr3g0123691 98.758 161 1 1 1 160 1 161 1.50e-113 324
Msa1459180 MtrunA17_Chr8g0381741 72.903 155 37 3 1 155 1 150 3.68e-72 219
Msa1459180 MtrunA17_Chr3g0119291 53.846 156 70 2 1 155 1 155 1.13e-47 155
Msa1459180 MtrunA17_Chr5g0415941 60.526 114 41 1 46 155 70 183 5.81e-40 137
Msa1459180 MtrunA17_Chr8g0362151 53.571 140 55 3 25 154 33 172 8.22e-40 135
Msa1459180 MtrunA17_Chr8g0362751 59.649 114 42 1 47 160 81 190 2.20e-39 134
Msa1459180 MtrunA17_Chr4g0060031 59.459 111 45 0 50 160 86 196 2.06e-38 133
Msa1459180 MtrunA17_Chr5g0416391 60.550 109 43 0 46 154 64 172 2.20e-38 132
Msa1459180 MtrunA17_Chr6g0450991 66.327 98 33 0 58 155 66 163 5.64e-38 130
Msa1459180 MtrunA17_Chr6g0453021 54.098 122 47 1 31 152 77 189 3.36e-36 126
Msa1459180 MtrunA17_Chr7g0217111 60.417 96 38 0 59 154 80 175 4.42e-31 112
Msa1459180 MtrunA17_Chr7g0265521 46.774 124 57 2 35 158 41 155 2.34e-29 107
Msa1459180 MtrunA17_Chr3g0127511 50.549 91 45 0 61 151 40 130 2.72e-26 99.8
Msa1459180 MtrunA17_Chr1g0179581 50.000 92 39 1 58 149 27 111 5.19e-26 95.5
Msa1459180 MtrunA17_Chr8g0346251 51.163 86 42 0 66 151 48 133 1.17e-25 98.2
Msa1459180 MtrunA17_Chr5g0403691 48.182 110 57 0 51 160 45 154 1.97e-24 94.4
Msa1459180 MtrunA17_Chr5g0403701 57.317 82 35 0 51 132 45 126 2.14e-24 94.0
Msa1459180 MtrunA17_Chr4g0055851 45.631 103 49 1 51 153 112 207 1.41e-18 80.1
Msa1459180 MtrunA17_Chr1g0151971 48.421 95 42 1 59 153 130 217 4.16e-18 79.0
Msa1459180 MtrunA17_Chr4g0054421 43.689 103 51 1 51 153 119 214 2.59e-17 76.6
Msa1459180 MtrunA17_Chr5g0400781 42.718 103 52 1 51 153 115 210 1.10e-16 74.7
Msa1459180 MtrunA17_Chr5g0399491 44.660 103 50 1 51 153 128 223 1.87e-16 74.3
Msa1459180 MtrunA17_Chr2g0308611 43.878 98 48 1 56 153 197 287 2.99e-16 74.3
Msa1459180 MtrunA17_Chr4g0044091 41.346 104 53 2 54 156 60 156 5.46e-16 71.6
Msa1459180 MtrunA17_Chr1g0175651 40.179 112 60 1 42 153 137 241 7.58e-16 72.8
Msa1459180 MtrunA17_Chr4g0071411 45.055 91 43 1 62 152 91 174 8.65e-16 71.6
Msa1459180 MtrunA17_Chr8g0335131 44.211 95 46 1 59 153 146 233 1.44e-15 72.0
Msa1459180 MtrunA17_Chr7g0258831 38.806 134 63 3 32 153 121 247 1.67e-15 72.0
Msa1459180 MtrunA17_Chr3g0135331 50.000 72 36 0 59 130 145 216 1.02e-13 67.0
Msa1459180 MtrunA17_Chr2g0299031 37.288 118 64 3 42 156 63 173 7.49e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459180 AT4G40060.1 60.843 166 51 5 1 159 1 159 6.56e-59 185
Msa1459180 AT2G22430.1 63.354 161 49 6 1 155 2 158 6.65e-54 172
Msa1459180 AT5G65310.1 57.310 171 60 5 1 158 1 171 2.29e-52 169
Msa1459180 AT5G65310.2 66.406 128 36 2 38 158 26 153 7.70e-51 164
Msa1459180 AT3G01470.1 65.049 103 35 1 58 159 67 169 3.42e-39 134
Msa1459180 AT1G69780.1 54.472 123 41 2 47 154 58 180 7.52e-37 128
Msa1459180 AT5G15150.1 57.895 114 45 1 42 152 95 208 8.89e-37 129
Msa1459180 AT3G01220.1 53.982 113 50 1 44 154 70 182 1.73e-33 119
Msa1459180 AT2G46680.1 48.544 103 53 0 50 152 23 125 2.46e-30 110
Msa1459180 AT1G26960.1 47.692 130 63 3 25 154 42 166 4.28e-30 110
Msa1459180 AT2G46680.2 47.748 111 57 1 50 159 23 133 1.79e-29 108
Msa1459180 AT1G27045.5 49.565 115 58 0 45 159 11 125 3.83e-27 100
Msa1459180 AT1G27045.3 49.565 115 58 0 45 159 11 125 3.83e-27 100
Msa1459180 AT1G27045.2 49.565 115 58 0 45 159 3 117 4.28e-27 100
Msa1459180 AT1G27045.1 49.565 115 58 0 45 159 54 168 5.93e-27 101
Msa1459180 AT3G61890.1 48.936 94 48 0 62 155 33 126 6.28e-27 101
Msa1459180 AT5G03790.1 49.485 97 42 1 59 155 77 166 1.00e-25 98.6
Msa1459180 AT1G27045.4 49.533 107 54 0 45 151 54 160 3.68e-25 97.4
Msa1459180 AT5G03790.2 49.462 93 40 1 59 151 77 162 8.44e-24 92.4
Msa1459180 AT4G36740.1 46.789 109 51 1 52 160 48 149 9.73e-23 90.1
Msa1459180 AT4G36740.2 46.789 109 51 1 52 160 49 150 9.93e-23 90.1
Msa1459180 AT2G18550.1 47.458 118 47 3 46 160 50 155 2.72e-22 89.0
Msa1459180 AT5G66700.1 60.811 74 29 0 59 132 71 144 5.70e-22 88.6
Msa1459180 AT2G36610.1 39.535 129 61 3 38 158 52 171 1.40e-21 86.3
Msa1459180 AT5G53980.1 53.521 71 33 0 59 129 11 81 3.14e-18 77.0
Msa1459180 AT4G37790.1 42.718 103 52 1 51 153 118 213 5.92e-17 75.9
Msa1459180 AT4G16780.1 42.718 103 52 1 51 153 121 216 1.59e-16 75.1
Msa1459180 AT2G22800.1 44.660 103 50 1 51 153 105 200 1.93e-16 74.7
Msa1459180 AT2G01430.1 40.517 116 61 3 42 156 122 230 5.16e-16 73.6
Msa1459180 AT5G06710.1 43.689 103 50 2 51 153 183 277 1.31e-15 72.8
Msa1459180 AT4G17460.1 43.000 100 50 1 54 153 130 222 5.14e-15 70.9
Msa1459180 AT5G47370.1 42.718 103 52 1 51 153 122 217 9.33e-15 70.1
Msa1459180 AT2G44910.1 43.158 95 47 1 59 153 163 250 2.91e-14 68.9
Msa1459180 AT3G60390.1 42.268 97 49 1 57 153 160 249 3.73e-13 65.9
Msa1459180 AT2G01430.2 45.714 70 38 0 42 111 122 191 3.10e-11 59.7
Msa1459180 AT1G70920.2 38.614 101 55 1 53 153 33 126 8.71e-11 57.8

Find 43 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGCTTCTCTTTCCTTTC+AGG 0.097054 tig0040092:-19243 Msa1459180:intergenic
CAGTAAAATTATTGTTATTA+TGG 0.162010 tig0040092:-18544 Msa1459180:intergenic
TCCATCTTGCTCTCCTGTTT+TGG 0.182991 tig0040092:-19308 Msa1459180:intergenic
ATTCACTAACGTTGTTAATA+AGG 0.215659 tig0040092:+18745 Msa1459180:five_prime_UTR
CCATACACATGTTTGTTCCT+TGG 0.325978 tig0040092:-19072 Msa1459180:intergenic
AAGCAGTTGGAAAGAGATTA+TGG 0.350992 tig0040092:+19336 Msa1459180:CDS
TATGTGTATGAATTGTTTGA+TGG 0.356725 tig0040092:+18677 Msa1459180:five_prime_UTR
TAGCTGTTTGGTTCCAAAAC+AGG 0.367018 tig0040092:+19295 Msa1459180:CDS
ATTAATGATTAACCTGTTGA+TGG 0.378350 tig0040092:-18895 Msa1459180:intergenic
GAAGGATGTGTTGAAGAAAC+TGG 0.381674 tig0040092:+19135 Msa1459180:CDS
GAGAAGCTTGCCATTGAACT+TGG 0.393138 tig0040092:+19255 Msa1459180:CDS
AGTGGATCAAGTTAAGGCTT+TGG 0.405768 tig0040092:+19188 Msa1459180:CDS
GTCTCTTCATGAGTGAAAAT+AGG 0.405791 tig0040092:-18828 Msa1459180:intergenic
AGCCTAGACAAGTAGCTGTT+TGG 0.421533 tig0040092:+19283 Msa1459180:CDS
ATCACAATCTCTCCATCAAC+AGG 0.446409 tig0040092:+18883 Msa1459180:CDS
AAGTTTATTAGTTTAATTGT+GGG 0.470049 tig0040092:+18646 Msa1459180:five_prime_UTR
ACTAAGAGTGGATCAAGTTA+AGG 0.482047 tig0040092:+19182 Msa1459180:CDS
TAAGTTTATTAGTTTAATTG+TGG 0.483088 tig0040092:+18645 Msa1459180:five_prime_UTR
ATTATAAGATTATGATATGA+TGG 0.488238 tig0040092:-18495 Msa1459180:intergenic
TGAAGAAGAATCTGAGGTGT+TGG 0.489416 tig0040092:-18851 Msa1459180:intergenic
TTGGATGGATTTGAAGAAGA+AGG 0.493565 tig0040092:+19117 Msa1459180:CDS
CCAAGGAACAAACATGTGTA+TGG 0.493903 tig0040092:+19072 Msa1459180:CDS
GAACAAACATGTGTATGGTA+TGG 0.501372 tig0040092:+19077 Msa1459180:CDS
AGGAGTTGAAGAAGAATCTG+AGG 0.515030 tig0040092:-18857 Msa1459180:intergenic
AGGGAGATTGATTAGAGCAA+AGG 0.520526 tig0040092:-18472 Msa1459180:intergenic
GAAGAAGAATCTGAGGTGTT+GGG 0.524763 tig0040092:-18850 Msa1459180:intergenic
TTTCAATCGATGATGTTGGA+TGG 0.527911 tig0040092:+19102 Msa1459180:CDS
AAGGAATTGAAATCAAAGCT+TGG 0.543819 tig0040092:+19979 Msa1459180:CDS
AGCAAAGGATGTGAACCAGC+GGG 0.545948 tig0040092:-18457 Msa1459180:intergenic
AGGCTGCAATCCAAGTTCAA+TGG 0.549394 tig0040092:-19265 Msa1459180:intergenic
GGAGTTTCAATCGATGATGT+TGG 0.555576 tig0040092:+19098 Msa1459180:CDS
ATAAGATTATGATATGATGG+AGG 0.555805 tig0040092:-18492 Msa1459180:intergenic
AAAACAAGCTTGAACCTGAA+AGG 0.570660 tig0040092:+19229 Msa1459180:CDS
TCCAAAACAGGAGAGCAAGA+TGG 0.577020 tig0040092:+19307 Msa1459180:CDS
TAAGATTATGATATGATGGA+GGG 0.581180 tig0040092:-18491 Msa1459180:intergenic
GAAGAAACGTAGACTAAGAG+TGG 0.584527 tig0040092:+19170 Msa1459180:CDS
AATTGTTTGATGGATGAAGT+AGG 0.588999 tig0040092:+18687 Msa1459180:five_prime_UTR
AACCAAACAGCTACTTGTCT+AGG 0.590010 tig0040092:-19285 Msa1459180:intergenic
AAGATGGAAGACTAAGCAGT+TGG 0.608505 tig0040092:+19323 Msa1459180:CDS
ATTTAGAGGAACATAGTCCA+AGG 0.623460 tig0040092:+19055 Msa1459180:intron
ATCAAACAATTCATACACAT+AGG 0.664098 tig0040092:-18675 Msa1459170:intergenic
GAGCAAAGGATGTGAACCAG+CGG 0.690367 tig0040092:-18458 Msa1459170:intergenic
GATGGAGAGATTGTGATGAG+AGG 0.700166 tig0040092:-18877 Msa1459170:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTCTTTCTATTTT+TGG + tig0040092:18947-18966 Msa1459180:intron 10.0%
!!! TTTTTTTTTCTTTCTATTTT+TGG + tig0040092:18947-18966 Msa1459180:intron 10.0%
!! ATTATAAGATTATGATATGA+TGG - tig0040092:18498-18517 Msa1033990:intergenic 15.0%
!!! CAGTAAAATTATTGTTATTA+TGG - tig0040092:18547-18566 Msa1033990:intergenic 15.0%
!!! TAAGTTTATTAGTTTAATTG+TGG + tig0040092:18645-18664 Msa1459180:five_prime_UTR 15.0%
!!! AAGTTTATTAGTTTAATTGT+GGG + tig0040092:18646-18665 Msa1459180:five_prime_UTR 15.0%
!! ATTATAAGATTATGATATGA+TGG - tig0040092:18498-18517 Msa1459180:intergenic 15.0%
!!! CAGTAAAATTATTGTTATTA+TGG - tig0040092:18547-18566 Msa1459180:intergenic 15.0%
!!! TAAGTTTATTAGTTTAATTG+TGG + tig0040092:18645-18664 Msa1459180:five_prime_UTR 15.0%
!!! AAGTTTATTAGTTTAATTGT+GGG + tig0040092:18646-18665 Msa1459180:five_prime_UTR 15.0%
!!! ATTTTACTGTGTTAAAAAGA+AGG + tig0040092:18558-18577 Msa1459180:five_prime_UTR 20.0%
!!! TTTTTTCTTTCTATTTTTGG+AGG + tig0040092:18950-18969 Msa1459180:intron 20.0%
!!! TTTTTCTTTCTATTTTTGGA+GGG + tig0040092:18951-18970 Msa1459180:intron 20.0%
!! ACGTAAAAGTAAAAAAAACA+TGG - tig0040092:18979-18998 Msa1459180:intergenic 20.0%
!!! TGTTTTTTTTACTTTTACGT+TGG + tig0040092:18979-18998 Msa1459180:intron 20.0%
!!! TTTTTTTTGCATTGATTTAG+AGG + tig0040092:19041-19060 Msa1459180:intron 20.0%
!!! TTTGTTGTATTTACAGATTA+AGG + tig0040092:19960-19979 Msa1459180:intron 20.0%
!!! ATTTTACTGTGTTAAAAAGA+AGG + tig0040092:18558-18577 Msa1459180:five_prime_UTR 20.0%
!!! TTTTTTCTTTCTATTTTTGG+AGG + tig0040092:18950-18969 Msa1459180:intron 20.0%
!!! TTTTTCTTTCTATTTTTGGA+GGG + tig0040092:18951-18970 Msa1459180:intron 20.0%
!! ACGTAAAAGTAAAAAAAACA+TGG - tig0040092:18979-18998 Msa1459180:intergenic 20.0%
!!! TGTTTTTTTTACTTTTACGT+TGG + tig0040092:18979-18998 Msa1459180:intron 20.0%
!!! TTTTTTTTGCATTGATTTAG+AGG + tig0040092:19041-19060 Msa1459180:intron 20.0%
!!! TTTGTTGTATTTACAGATTA+AGG + tig0040092:19960-19979 Msa1459180:intron 20.0%
!! TAAGATTATGATATGATGGA+GGG - tig0040092:18494-18513 Msa1033990:intergenic 25.0%
! ATAAGATTATGATATGATGG+AGG - tig0040092:18495-18514 Msa1033990:intergenic 25.0%
! ATCAAACAATTCATACACAT+AGG - tig0040092:18678-18697 Msa1459180:intergenic 25.0%
! TATGTGTATGAATTGTTTGA+TGG + tig0040092:18677-18696 Msa1459180:five_prime_UTR 25.0%
! ATTCACTAACGTTGTTAATA+AGG + tig0040092:18745-18764 Msa1459180:five_prime_UTR 25.0%
! ATTAATGATTAACCTGTTGA+TGG - tig0040092:18898-18917 Msa1459180:intergenic 25.0%
! TTATAGTTAAGTTACTACTG+TGG - tig0040092:19458-19477 Msa1459180:intergenic 25.0%
!!! TGTGTTATTTAGTGTATGTT+TGG + tig0040092:19744-19763 Msa1459180:intron 25.0%
! TATTTAGTGTATGTTTGGAT+TGG + tig0040092:19749-19768 Msa1459180:intron 25.0%
! TGAATTTAGCAAAATCACTT+TGG + tig0040092:19775-19794 Msa1459180:intron 25.0%
! GATCTTAGTTATGAAATTGT+AGG + tig0040092:19839-19858 Msa1459180:intron 25.0%
!! TAAGATTATGATATGATGGA+GGG - tig0040092:18494-18513 Msa1459180:intergenic 25.0%
! ATAAGATTATGATATGATGG+AGG - tig0040092:18495-18514 Msa1459180:intergenic 25.0%
! ATCAAACAATTCATACACAT+AGG - tig0040092:18678-18697 Msa1459180:intergenic 25.0%
! TATGTGTATGAATTGTTTGA+TGG + tig0040092:18677-18696 Msa1459180:five_prime_UTR 25.0%
! ATTCACTAACGTTGTTAATA+AGG + tig0040092:18745-18764 Msa1459180:five_prime_UTR 25.0%
! ATTAATGATTAACCTGTTGA+TGG - tig0040092:18898-18917 Msa1459180:intergenic 25.0%
! TTATAGTTAAGTTACTACTG+TGG - tig0040092:19458-19477 Msa1459180:intergenic 25.0%
!!! TGTGTTATTTAGTGTATGTT+TGG + tig0040092:19744-19763 Msa1459180:intron 25.0%
! TATTTAGTGTATGTTTGGAT+TGG + tig0040092:19749-19768 Msa1459180:intron 25.0%
! TGAATTTAGCAAAATCACTT+TGG + tig0040092:19775-19794 Msa1459180:intron 25.0%
! GATCTTAGTTATGAAATTGT+AGG + tig0040092:19839-19858 Msa1459180:intron 25.0%
! AATTGTTTGATGGATGAAGT+AGG + tig0040092:18687-18706 Msa1459180:five_prime_UTR 30.0%
!! GGCAAGTATTTAACTTTTCT+AGG + tig0040092:19860-19879 Msa1459180:intron 30.0%
AAGGAATTGAAATCAAAGCT+TGG + tig0040092:19979-19998 Msa1459180:CDS 30.0%
! AATTGTTTGATGGATGAAGT+AGG + tig0040092:18687-18706 Msa1459180:five_prime_UTR 30.0%
!! GGCAAGTATTTAACTTTTCT+AGG + tig0040092:19860-19879 Msa1459180:intron 30.0%
AAGGAATTGAAATCAAAGCT+TGG + tig0040092:19979-19998 Msa1459180:CDS 30.0%
GTCTCTTCATGAGTGAAAAT+AGG - tig0040092:18831-18850 Msa1459180:intergenic 35.0%
ATTTAGAGGAACATAGTCCA+AGG + tig0040092:19055-19074 Msa1459180:intron 35.0%
GAACAAACATGTGTATGGTA+TGG + tig0040092:19077-19096 Msa1459180:CDS 35.0%
TTTCAATCGATGATGTTGGA+TGG + tig0040092:19102-19121 Msa1459180:CDS 35.0%
! TTGGATGGATTTGAAGAAGA+AGG + tig0040092:19117-19136 Msa1459180:CDS 35.0%
ACTAAGAGTGGATCAAGTTA+AGG + tig0040092:19182-19201 Msa1459180:CDS 35.0%
AAAACAAGCTTGAACCTGAA+AGG + tig0040092:19229-19248 Msa1459180:CDS 35.0%
AAGCAGTTGGAAAGAGATTA+TGG + tig0040092:19336-19355 Msa1459180:CDS 35.0%
! AGACAACAAAGCTTTTCACA+AGG + tig0040092:19413-19432 Msa1459180:CDS 35.0%
AGATCAAGTACTTTCACAAG+AGG - tig0040092:19824-19843 Msa1459180:intergenic 35.0%
GTCTCTTCATGAGTGAAAAT+AGG - tig0040092:18831-18850 Msa1459180:intergenic 35.0%
ATTTAGAGGAACATAGTCCA+AGG + tig0040092:19055-19074 Msa1459180:intron 35.0%
GAACAAACATGTGTATGGTA+TGG + tig0040092:19077-19096 Msa1459180:CDS 35.0%
TTTCAATCGATGATGTTGGA+TGG + tig0040092:19102-19121 Msa1459180:CDS 35.0%
! TTGGATGGATTTGAAGAAGA+AGG + tig0040092:19117-19136 Msa1459180:CDS 35.0%
ACTAAGAGTGGATCAAGTTA+AGG + tig0040092:19182-19201 Msa1459180:CDS 35.0%
AAAACAAGCTTGAACCTGAA+AGG + tig0040092:19229-19248 Msa1459180:CDS 35.0%
AAGCAGTTGGAAAGAGATTA+TGG + tig0040092:19336-19355 Msa1459180:CDS 35.0%
! AGACAACAAAGCTTTTCACA+AGG + tig0040092:19413-19432 Msa1459180:CDS 35.0%
AGATCAAGTACTTTCACAAG+AGG - tig0040092:19824-19843 Msa1459180:intergenic 35.0%
AGGGAGATTGATTAGAGCAA+AGG - tig0040092:18475-18494 Msa1033990:intergenic 40.0%
! GAAGAAGAATCTGAGGTGTT+GGG - tig0040092:18853-18872 Msa1459180:intergenic 40.0%
! TGAAGAAGAATCTGAGGTGT+TGG - tig0040092:18854-18873 Msa1459180:intergenic 40.0%
AGGAGTTGAAGAAGAATCTG+AGG - tig0040092:18860-18879 Msa1459180:intergenic 40.0%
ATCACAATCTCTCCATCAAC+AGG + tig0040092:18883-18902 Msa1459180:CDS 40.0%
CCATACACATGTTTGTTCCT+TGG - tig0040092:19075-19094 Msa1459180:intergenic 40.0%
CCAAGGAACAAACATGTGTA+TGG + tig0040092:19072-19091 Msa1459180:CDS 40.0%
GGAGTTTCAATCGATGATGT+TGG + tig0040092:19098-19117 Msa1459180:CDS 40.0%
GAAGGATGTGTTGAAGAAAC+TGG + tig0040092:19135-19154 Msa1459180:CDS 40.0%
GAAGAAACGTAGACTAAGAG+TGG + tig0040092:19170-19189 Msa1459180:CDS 40.0%
AGTGGATCAAGTTAAGGCTT+TGG + tig0040092:19188-19207 Msa1459180:CDS 40.0%
!! GGCTTTGGAGAAAAACTTTG+AGG + tig0040092:19203-19222 Msa1459180:CDS 40.0%
AACCAAACAGCTACTTGTCT+AGG - tig0040092:19288-19307 Msa1459180:intergenic 40.0%
! TAGCTGTTTGGTTCCAAAAC+AGG + tig0040092:19295-19314 Msa1459180:CDS 40.0%
AAGATGGAAGACTAAGCAGT+TGG + tig0040092:19323-19342 Msa1459180:CDS 40.0%
! CAACAAAGCTTTTCACAAGG+AGG + tig0040092:19416-19435 Msa1459180:CDS 40.0%
AGGGAGATTGATTAGAGCAA+AGG - tig0040092:18475-18494 Msa1459180:intergenic 40.0%
! GAAGAAGAATCTGAGGTGTT+GGG - tig0040092:18853-18872 Msa1459180:intergenic 40.0%
! TGAAGAAGAATCTGAGGTGT+TGG - tig0040092:18854-18873 Msa1459180:intergenic 40.0%
AGGAGTTGAAGAAGAATCTG+AGG - tig0040092:18860-18879 Msa1459180:intergenic 40.0%
ATCACAATCTCTCCATCAAC+AGG + tig0040092:18883-18902 Msa1459180:CDS 40.0%
CCATACACATGTTTGTTCCT+TGG - tig0040092:19075-19094 Msa1459180:intergenic 40.0%
CCAAGGAACAAACATGTGTA+TGG + tig0040092:19072-19091 Msa1459180:CDS 40.0%
GGAGTTTCAATCGATGATGT+TGG + tig0040092:19098-19117 Msa1459180:CDS 40.0%
GAAGGATGTGTTGAAGAAAC+TGG + tig0040092:19135-19154 Msa1459180:CDS 40.0%
GAAGAAACGTAGACTAAGAG+TGG + tig0040092:19170-19189 Msa1459180:CDS 40.0%
AGTGGATCAAGTTAAGGCTT+TGG + tig0040092:19188-19207 Msa1459180:CDS 40.0%
!! GGCTTTGGAGAAAAACTTTG+AGG + tig0040092:19203-19222 Msa1459180:CDS 40.0%
AACCAAACAGCTACTTGTCT+AGG - tig0040092:19288-19307 Msa1459180:intergenic 40.0%
! TAGCTGTTTGGTTCCAAAAC+AGG + tig0040092:19295-19314 Msa1459180:CDS 40.0%
AAGATGGAAGACTAAGCAGT+TGG + tig0040092:19323-19342 Msa1459180:CDS 40.0%
! CAACAAAGCTTTTCACAAGG+AGG + tig0040092:19416-19435 Msa1459180:CDS 40.0%
GATGGAGAGATTGTGATGAG+AGG - tig0040092:18880-18899 Msa1459180:intergenic 45.0%
GCAAGCTTCTCTTTCCTTTC+AGG - tig0040092:19246-19265 Msa1459180:intergenic 45.0%
GAGAAGCTTGCCATTGAACT+TGG + tig0040092:19255-19274 Msa1459180:CDS 45.0%
AGGCTGCAATCCAAGTTCAA+TGG - tig0040092:19268-19287 Msa1459180:intergenic 45.0%
AGCCTAGACAAGTAGCTGTT+TGG + tig0040092:19283-19302 Msa1459180:CDS 45.0%
TCCAAAACAGGAGAGCAAGA+TGG + tig0040092:19307-19326 Msa1459180:CDS 45.0%
! TCCATCTTGCTCTCCTGTTT+TGG - tig0040092:19311-19330 Msa1459180:intergenic 45.0%
GATGGAGAGATTGTGATGAG+AGG - tig0040092:18880-18899 Msa1459180:intergenic 45.0%
GCAAGCTTCTCTTTCCTTTC+AGG - tig0040092:19246-19265 Msa1459180:intergenic 45.0%
GAGAAGCTTGCCATTGAACT+TGG + tig0040092:19255-19274 Msa1459180:CDS 45.0%
AGGCTGCAATCCAAGTTCAA+TGG - tig0040092:19268-19287 Msa1459180:intergenic 45.0%
AGCCTAGACAAGTAGCTGTT+TGG + tig0040092:19283-19302 Msa1459180:CDS 45.0%
TCCAAAACAGGAGAGCAAGA+TGG + tig0040092:19307-19326 Msa1459180:CDS 45.0%
! TCCATCTTGCTCTCCTGTTT+TGG - tig0040092:19311-19330 Msa1459180:intergenic 45.0%
Chromosome Type Strat End Strand Name
tig0040092 gene 18460 20014 18460 ID=Msa1459180;Name=Msa1459180
tig0040092 mRNA 18460 20014 18460 ID=Msa1459180-mRNA-1;Parent=Msa1459180;Name=Msa1459180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=381|1|0.66|1|0.5|0.66|3|0|160
tig0040092 exon 18460 18904 18460 ID=Msa1459180-mRNA-1:exon:22159;Parent=Msa1459180-mRNA-1
tig0040092 exon 19061 19437 19061 ID=Msa1459180-mRNA-1:exon:22160;Parent=Msa1459180-mRNA-1
tig0040092 exon 19976 20014 19976 ID=Msa1459180-mRNA-1:exon:22161;Parent=Msa1459180-mRNA-1
tig0040092 five_prime_UTR 18460 18840 18460 ID=Msa1459180-mRNA-1:five_prime_utr;Parent=Msa1459180-mRNA-1
tig0040092 CDS 18841 18904 18841 ID=Msa1459180-mRNA-1:cds;Parent=Msa1459180-mRNA-1
tig0040092 CDS 19061 19437 19061 ID=Msa1459180-mRNA-1:cds;Parent=Msa1459180-mRNA-1
tig0040092 CDS 19976 20014 19976 ID=Msa1459180-mRNA-1:cds;Parent=Msa1459180-mRNA-1
Gene Sequence

>Msa1459180

ATGAAGAGACCCAACACCTCAGATTCTTCTTCAACTCCTCTCATCACAATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCGATGATGTTGGATGGATTTGAAGAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGATTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACTAAGCAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGACAACAAAGCTTTTCACAAGGAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAA

Protein sequence

>Msa1459180

MKRPNTSDSSSTPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEGCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFHKEIKELKSKLGEEEK