AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527730 MtrunA17_Chr2g0321241 82.192 438 2 3 1 362 1 438 0.0 702
Msa0527730 MtrunA17_Chr4g0026631 74.658 438 30 4 1 362 1 433 0.0 620
Msa0527730 MtrunA17_Chr2g0297851 75.833 120 20 2 1 112 1 119 7.50e-54 178
Msa0527730 MtrunA17_Chr2g0297851 70.690 116 21 2 5 112 125 235 7.75e-42 147
Msa0527730 MtrunA17_Chr4g0052271 47.938 194 76 2 112 280 150 343 2.36e-53 181
Msa0527730 MtrunA17_Chr4g0004121 37.857 280 117 5 112 359 273 527 1.09e-51 179
Msa0527730 MtrunA17_Chr7g0246111 36.823 277 137 5 109 359 240 504 8.20e-48 169
Msa0527730 MtrunA17_Chr6g0459561 36.101 277 123 3 109 359 410 658 1.18e-45 165
Msa0527730 MtrunA17_Chr6g0459541 36.093 302 114 7 109 359 70 343 3.50e-45 158
Msa0527730 MtrunA17_Chr1g0195731 43.407 182 77 3 115 270 970 1151 6.06e-38 145
Msa0527730 MtrunA17_Chr6g0462581 42.132 197 88 4 109 280 529 724 7.13e-38 144
Msa0527730 MtrunA17_Chr4g0038101 41.667 192 85 5 115 280 757 947 8.44e-38 144
Msa0527730 MtrunA17_Chr1g0195741 42.857 182 78 4 115 270 974 1155 3.60e-37 142
Msa0527730 MtrunA17_Chr3g0116131 42.857 182 78 4 115 270 938 1119 3.96e-37 142
Msa0527730 MtrunA17_Chr5g0397121 39.691 194 92 3 112 280 545 738 5.20e-37 142
Msa0527730 MtrunA17_Chr8g0387641 38.660 194 94 2 112 280 553 746 3.08e-36 139
Msa0527730 MtrunA17_Chr6g0459551 36.042 283 138 8 109 358 130 402 4.50e-35 133
Msa0527730 MtrunA17_Chr1g0202381 36.979 192 97 3 112 279 501 692 3.13e-34 134
Msa0527730 MtrunA17_Chr1g0204031 37.705 183 89 3 112 269 590 772 1.26e-33 132
Msa0527730 MtrunA17_Chr3g0127401 37.173 191 94 4 116 281 118 307 5.21e-33 126
Msa0527730 MtrunA17_Chr3g0127431 35.751 193 98 3 116 283 121 312 5.43e-32 124
Msa0527730 MtrunA17_Chr1g0202371 35.751 193 99 3 112 280 430 621 1.83e-31 125
Msa0527730 MtrunA17_Chr7g0255721 36.548 197 95 4 116 284 721 915 3.64e-29 119
Msa0527730 MtrunA17_Chr7g0255721 34.158 202 96 5 118 284 422 621 5.73e-24 103
Msa0527730 MtrunA17_Chr4g0050561 50.400 125 58 2 118 239 194 317 1.94e-28 114
Msa0527730 MtrunA17_Chr7g0255641 37.056 197 94 5 116 284 694 888 3.80e-28 115
Msa0527730 MtrunA17_Chr7g0255641 35.260 173 81 5 121 266 434 602 8.42e-20 91.3
Msa0527730 MtrunA17_Chr2g0327121 36.066 183 87 5 116 269 516 697 3.02e-27 113
Msa0527730 MtrunA17_Chr2g0327121 31.795 195 103 5 118 285 245 436 2.03e-24 104
Msa0527730 MtrunA17_Chr1g0180791 36.066 183 87 5 116 269 514 695 7.48e-27 112
Msa0527730 MtrunA17_Chr1g0180791 32.828 198 103 5 115 285 240 434 2.50e-26 110
Msa0527730 MtrunA17_Chr7g0264521 36.066 183 87 5 116 269 515 696 7.69e-27 112
Msa0527730 MtrunA17_Chr7g0264521 32.323 198 104 5 115 285 241 435 7.23e-26 109
Msa0527730 MtrunA17_Chr3g0145011 36.598 194 84 9 109 269 169 356 1.02e-26 109
Msa0527730 MtrunA17_Chr3g0141901 37.113 194 83 9 109 269 166 353 1.90e-26 108
Msa0527730 MtrunA17_Chr2g0327231 42.520 127 70 2 116 240 382 507 5.18e-26 108
Msa0527730 MtrunA17_Chr7g0255901 40.909 132 77 1 109 239 667 798 4.68e-25 107
Msa0527730 MtrunA17_Chr8g0362771 33.493 209 105 6 102 283 260 461 1.51e-24 105
Msa0527730 MtrunA17_Chr6g0456351 46.610 118 61 2 118 235 354 469 2.08e-24 104
Msa0527730 MtrunA17_Chr7g0217421 37.079 178 83 5 118 267 76 252 3.36e-24 102
Msa0527730 MtrunA17_Chr1g0192151 33.871 186 93 5 115 271 202 386 3.66e-24 102
Msa0527730 MtrunA17_Chr4g0014731 33.871 186 93 5 115 271 203 387 3.77e-24 102
Msa0527730 MtrunA17_Chr8g0345461 39.535 172 85 8 116 276 201 364 4.53e-24 102
Msa0527730 MtrunA17_Chr6g0459531 29.242 277 115 8 109 359 95 316 5.29e-24 100
Msa0527730 MtrunA17_Chr4g0052411 35.294 238 120 7 111 320 260 491 5.76e-24 103
Msa0527730 MtrunA17_Chr1g0200081 39.535 172 85 8 116 276 211 374 6.79e-24 102
Msa0527730 MtrunA17_Chr2g0297281 39.674 184 81 6 112 267 318 499 8.77e-24 102
Msa0527730 MtrunA17_Chr3g0108321 43.902 123 64 3 116 235 195 315 1.22e-23 100
Msa0527730 MtrunA17_Chr3g0143721 37.931 174 79 4 121 266 289 461 2.39e-23 101
Msa0527730 MtrunA17_Chr7g0255651 34.197 193 98 4 116 280 318 509 2.50e-23 101
Msa0527730 MtrunA17_Chr7g0248361 40.331 181 75 6 121 269 232 411 2.84e-23 101
Msa0527730 MtrunA17_Chr7g0260601 38.122 181 79 5 121 269 280 459 1.13e-22 99.8
Msa0527730 MtrunA17_Chr6g0476861 38.122 181 79 5 121 269 237 416 2.10e-22 98.6
Msa0527730 MtrunA17_Chr3g0086411 43.089 123 62 3 120 239 255 372 2.30e-22 98.2
Msa0527730 MtrunA17_Chr4g0031821 38.122 181 79 5 121 269 360 539 5.38e-22 97.8
Msa0527730 MtrunA17_Chr2g0277831 42.975 121 65 3 120 239 573 690 1.02e-21 96.7
Msa0527730 MtrunA17_Chr2g0277831 41.935 124 68 2 115 235 277 399 1.09e-21 96.7
Msa0527730 MtrunA17_Chr3g0086401 29.123 285 149 10 115 358 128 400 1.19e-21 96.7
Msa0527730 MtrunA17_Chr3g0086401 41.667 120 68 2 120 239 425 542 3.49e-21 95.1
Msa0527730 MtrunA17_Chr5g0429571 35.323 201 94 6 115 282 347 544 1.53e-21 96.3
Msa0527730 MtrunA17_Chr3g0135781 39.259 135 78 4 102 236 78 208 1.78e-21 91.3
Msa0527730 MtrunA17_Chr7g0255691 35.323 201 101 4 116 288 322 521 2.23e-21 95.5
Msa0527730 MtrunA17_Chr7g0255691 29.231 195 97 6 118 279 55 241 6.51e-15 75.9
Msa0527730 MtrunA17_Chr7g0262801 41.406 128 70 3 115 239 222 347 4.65e-21 94.0
Msa0527730 MtrunA17_Chr3g0135761 40.157 127 73 3 110 236 252 375 6.35e-21 94.4
Msa0527730 MtrunA17_Chr1g0182711 40.625 128 71 3 115 239 223 348 1.15e-20 92.8
Msa0527730 MtrunA17_Chr2g0331161 34.973 183 82 5 120 270 454 631 2.12e-20 92.8
Msa0527730 MtrunA17_Chr3g0135721 39.370 127 74 3 110 236 254 377 2.80e-20 92.4
Msa0527730 MtrunA17_Chr3g0104211 34.158 202 101 6 115 285 338 538 4.42e-20 92.0
Msa0527730 MtrunA17_Chr5g0432631 37.681 138 82 3 102 239 252 385 7.09e-20 91.3
Msa0527730 MtrunA17_Chr3g0094871 37.222 180 81 5 121 269 51 229 1.02e-19 90.1
Msa0527730 MtrunA17_Chr1g0158881 33.158 190 91 6 110 270 359 541 1.63e-18 87.0
Msa0527730 MtrunA17_Chr4g0033451 40.800 125 67 3 116 235 416 538 2.97e-18 86.7
Msa0527730 MtrunA17_Chr3g0129971 41.600 125 70 1 118 239 333 457 3.55e-18 86.3
Msa0527730 MtrunA17_Chr4g0043381 31.250 192 104 5 120 285 877 1066 5.10e-18 85.9
Msa0527730 MtrunA17_Chr2g0289231 34.254 181 91 8 115 271 341 517 5.19e-17 82.4
Msa0527730 MtrunA17_Chr5g0432641 34.058 138 87 4 102 239 214 347 4.47e-16 79.7
Msa0527730 MtrunA17_Chr8g0388371 26.840 231 125 6 115 305 438 664 1.48e-14 75.1
Msa0527730 MtrunA17_Chr2g0316851 28.571 189 100 6 116 271 630 816 9.99e-14 72.8
Msa0527730 MtrunA17_Chr3g0116941 35.036 137 70 5 117 235 195 330 1.73e-13 71.2
Msa0527730 MtrunA17_Chr1g0190401 37.190 121 72 3 112 229 709 828 1.47e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527730 AT2G27600.1 74.201 438 34 4 1 362 1 435 0.0 617
Msa0527730 AT1G80350.1 38.351 279 117 5 112 359 267 521 4.58e-55 189
Msa0527730 AT2G34560.1 46.701 197 69 4 116 281 135 326 4.33e-50 172
Msa0527730 AT2G34560.2 46.701 197 69 4 116 281 144 335 5.74e-50 172
Msa0527730 AT2G45500.4 37.906 277 114 6 109 359 108 352 1.11e-49 170
Msa0527730 AT2G45500.3 37.906 277 114 6 109 359 108 352 1.11e-49 170
Msa0527730 AT2G45500.1 37.906 277 114 6 109 359 245 489 1.64e-48 171
Msa0527730 AT2G45500.2 37.906 277 114 6 109 359 241 485 2.13e-48 170
Msa0527730 AT2G45500.5 37.906 277 114 6 109 359 251 495 3.20e-48 170
Msa0527730 AT3G27120.1 34.672 274 125 3 112 359 431 676 2.05e-43 159
Msa0527730 AT1G50140.2 44.162 197 83 5 110 280 720 915 1.62e-39 149
Msa0527730 AT1G50140.5 44.162 197 83 5 110 280 720 915 1.62e-39 149
Msa0527730 AT1G50140.3 44.162 197 83 5 110 280 742 937 1.80e-39 149
Msa0527730 AT1G50140.1 44.162 197 83 5 110 280 742 937 1.80e-39 149
Msa0527730 AT1G50140.4 44.162 197 83 5 110 280 742 937 1.80e-39 149
Msa0527730 AT3G19740.1 43.367 196 86 4 110 280 732 927 1.96e-38 146
Msa0527730 AT4G02480.1 42.188 192 84 4 115 280 996 1186 3.56e-38 145
Msa0527730 AT1G02890.1 42.308 182 79 3 115 270 977 1158 2.51e-37 143
Msa0527730 AT4G24860.2 42.308 182 79 3 115 270 849 1030 7.08e-37 142
Msa0527730 AT4G24860.4 42.308 182 79 3 115 270 826 1007 7.73e-37 142
Msa0527730 AT4G24860.1 42.308 182 79 3 115 270 853 1034 7.87e-37 142
Msa0527730 AT4G24860.3 42.308 182 79 3 115 270 851 1032 8.01e-37 142
Msa0527730 AT4G28000.3 39.796 196 94 3 109 280 546 741 1.38e-36 141
Msa0527730 AT4G28000.1 39.796 196 94 3 109 280 544 739 1.39e-36 141
Msa0527730 AT4G28000.2 39.796 196 94 3 109 280 546 741 1.49e-36 140
Msa0527730 AT1G64110.2 40.722 194 90 3 112 280 550 743 3.72e-36 139
Msa0527730 AT1G64110.4 40.722 194 90 3 112 280 550 743 3.72e-36 139
Msa0527730 AT1G64110.5 40.722 194 90 3 112 280 548 741 3.89e-36 139
Msa0527730 AT1G64110.3 40.722 194 90 3 112 280 548 741 3.89e-36 139
Msa0527730 AT1G64110.1 40.722 194 90 3 112 280 545 738 4.19e-36 139
Msa0527730 AT5G52882.1 39.796 196 94 3 109 280 543 738 2.28e-35 137
Msa0527730 AT4G27680.1 33.730 252 111 6 116 342 118 338 1.71e-34 131
Msa0527730 AT5G53540.1 32.540 252 114 5 116 342 121 341 2.30e-34 131
Msa0527730 AT3G56690.1 35.874 223 107 6 84 272 719 939 1.28e-28 117
Msa0527730 AT3G56690.1 32.653 196 103 4 115 283 416 609 1.08e-25 109
Msa0527730 AT5G19990.2 50.400 125 58 2 118 239 138 261 1.83e-28 114
Msa0527730 AT5G19990.1 50.400 125 58 2 118 239 196 319 2.99e-28 114
Msa0527730 AT5G19990.3 50.400 125 58 2 118 239 196 319 2.99e-28 114
Msa0527730 AT5G43010.1 35.922 206 96 9 109 283 166 366 3.40e-28 114
Msa0527730 AT5G20000.1 50.400 125 58 2 118 239 196 319 3.58e-28 114
Msa0527730 AT3G02450.1 36.408 206 96 6 110 285 361 561 1.08e-27 114
Msa0527730 AT1G45000.1 36.058 208 93 10 109 283 166 366 2.86e-27 111
Msa0527730 AT5G03340.1 36.066 183 87 5 116 269 513 694 3.33e-27 113
Msa0527730 AT5G03340.1 32.323 198 104 5 115 285 239 433 1.09e-25 108
Msa0527730 AT3G53230.1 36.216 185 84 5 116 269 514 695 6.81e-27 112
Msa0527730 AT3G53230.1 32.323 198 104 5 115 285 240 434 1.15e-25 108
Msa0527730 AT3G09840.1 32.323 198 104 5 115 285 239 433 1.08e-25 108
Msa0527730 AT3G09840.1 35.326 184 88 5 116 269 513 695 2.10e-24 105
Msa0527730 AT3G05530.1 34.409 186 92 5 115 271 203 387 1.49e-24 104
Msa0527730 AT1G06430.1 37.438 203 97 6 111 285 248 448 2.35e-24 105
Msa0527730 AT1G06430.3 37.438 203 97 6 111 285 248 448 2.35e-24 105
Msa0527730 AT1G06430.2 37.438 203 97 6 111 285 248 448 2.35e-24 105
Msa0527730 AT1G03000.1 40.984 122 71 1 115 235 689 810 2.44e-24 105
Msa0527730 AT2G30950.1 38.547 179 79 4 118 267 261 437 4.55e-24 104
Msa0527730 AT2G30950.2 38.547 179 79 4 118 267 261 437 4.55e-24 104
Msa0527730 AT2G30950.3 38.547 179 79 4 118 267 261 437 4.55e-24 104
Msa0527730 AT2G30950.4 38.547 179 79 4 118 267 265 441 5.11e-24 103
Msa0527730 AT1G53750.1 39.535 172 85 8 116 276 201 364 6.49e-24 102
Msa0527730 AT5G42270.1 36.702 188 90 4 121 280 287 473 8.57e-24 103
Msa0527730 AT1G62130.2 34.615 182 81 5 115 270 779 948 8.94e-24 103
Msa0527730 AT1G62130.1 34.615 182 81 5 115 270 786 955 1.13e-23 103
Msa0527730 AT5G58290.1 43.902 123 64 3 116 235 188 308 1.98e-23 100
Msa0527730 AT3G01610.2 43.077 130 64 2 115 235 265 393 2.05e-23 102
Msa0527730 AT3G01610.2 35.829 187 88 7 120 278 565 747 1.72e-18 87.4
Msa0527730 AT3G01610.1 43.077 130 64 2 115 235 265 393 2.34e-23 102
Msa0527730 AT3G01610.1 35.829 187 88 7 120 278 565 747 1.87e-18 87.4
Msa0527730 AT2G03670.1 47.154 123 61 2 116 235 319 440 2.63e-23 101
Msa0527730 AT2G03670.1 38.889 126 68 4 117 235 55 178 4.08e-16 80.1
Msa0527730 AT1G09100.1 33.155 187 93 5 115 271 202 386 3.09e-23 100
Msa0527730 AT1G07510.1 40.331 181 75 6 121 269 364 543 3.51e-23 101
Msa0527730 AT1G50250.1 37.931 174 79 4 121 266 299 471 5.35e-23 100
Msa0527730 AT1G45000.2 45.370 108 56 3 109 214 166 272 8.22e-23 98.2
Msa0527730 AT1G08270.1 60.227 88 17 2 33 112 1 78 3.50e-22 91.3
Msa0527730 AT1G08270.2 60.227 88 17 2 33 112 1 78 4.37e-22 91.3
Msa0527730 AT1G53780.3 38.372 172 87 8 116 276 372 535 1.67e-21 96.3
Msa0527730 AT1G53780.1 38.372 172 87 8 116 276 373 536 1.72e-21 96.3
Msa0527730 AT1G53780.4 38.372 172 87 8 116 276 373 536 1.72e-21 96.3
Msa0527730 AT1G53780.2 38.372 172 87 8 116 276 394 557 1.91e-21 96.3
Msa0527730 AT2G20140.1 41.406 128 70 3 115 239 220 345 3.70e-21 94.7
Msa0527730 AT5G15250.1 33.503 197 100 6 118 285 258 452 3.76e-21 95.5
Msa0527730 AT2G29080.1 40.556 180 75 6 121 269 359 537 4.11e-21 95.5
Msa0527730 AT4G29040.1 41.406 128 70 3 115 239 220 345 5.66e-21 94.0
Msa0527730 AT1G02890.2 33.516 182 67 4 115 270 977 1130 1.04e-20 94.4
Msa0527730 AT3G47060.1 32.411 253 111 8 85 282 306 553 1.05e-20 94.4
Msa0527730 AT3G16290.1 35.912 181 85 4 120 271 446 624 2.30e-20 93.2
Msa0527730 AT5G15250.2 41.129 124 70 2 118 239 258 380 4.99e-20 91.7
Msa0527730 AT2G26140.1 39.370 127 74 3 110 236 254 377 5.54e-20 92.0
Msa0527730 AT5G58870.1 33.962 212 105 6 115 292 360 570 1.56e-19 90.9
Msa0527730 AT5G08470.3 33.708 178 90 5 121 272 873 1048 8.32e-19 88.6
Msa0527730 AT5G08470.1 33.708 178 90 5 121 272 882 1057 8.81e-19 88.6
Msa0527730 AT5G53170.1 41.406 128 67 4 110 235 389 510 3.46e-18 86.7
Msa0527730 AT1G05910.1 32.275 189 93 5 116 271 414 600 5.11e-18 86.3
Msa0527730 AT2G03670.2 45.631 103 53 1 116 215 319 421 1.61e-17 84.0
Msa0527730 AT2G03670.2 38.889 126 68 4 117 235 55 178 3.32e-16 80.1
Msa0527730 AT5G64580.1 39.200 125 73 1 118 239 350 474 3.34e-17 83.6
Msa0527730 AT4G04180.1 35.393 178 89 7 115 269 360 534 4.19e-17 83.2
Msa0527730 AT4G04180.2 35.393 178 89 7 115 269 355 529 4.69e-17 82.8
Msa0527730 AT5G08470.2 37.963 108 65 2 121 228 882 987 5.80e-15 77.0
Msa0527730 AT3G15120.2 27.979 193 104 5 116 275 762 952 1.43e-14 75.9
Msa0527730 AT3G15120.1 27.979 193 104 5 116 275 752 942 1.55e-14 75.9
Msa0527730 AT4G23940.1 27.751 209 112 6 115 286 461 667 5.06e-14 73.9
Msa0527730 AT3G04340.1 35.156 128 78 4 112 236 813 938 6.60e-12 67.8
Msa0527730 AT4G04910.1 27.586 232 111 9 93 271 216 443 6.79e-11 64.3

Find 109 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAAGAACAAGAACTTTC+TGG 0.202134 4_1:+347950 None:intergenic
GATTCAAATATACACAATTT+AGG 0.234814 4_1:+346841 None:intergenic
AAGGATGGTGGTGGGGAGGG+TGG 0.244754 4_1:-351453 Msa0527730:CDS
GGTGGGGAGGGTGGTGGAGG+TGG 0.245687 4_1:-351444 Msa0527730:CDS
GATGGTGGTGGGGAGGGTGG+TGG 0.246166 4_1:-351450 Msa0527730:CDS
GTGCTTGATGATGGTGGGCC+AGG 0.248818 4_1:-351528 Msa0527730:CDS
TCAAAATCTGTTCTTGTAAT+GGG 0.258427 4_1:+347135 None:intergenic
TCCCCGAAAATAACATAAAA+AGG 0.262830 4_1:+346925 None:intergenic
GGTGGTGGGGAGGGTGGTGG+AGG 0.266118 4_1:-351447 Msa0527730:CDS
TTTCTCGAGCCATTTGAAAA+AGG 0.305402 4_1:+349120 None:intergenic
TTCAAAATCTGTTCTTGTAA+TGG 0.305475 4_1:+347134 None:intergenic
GAGAGATTCACAAAGGAGTT+TGG 0.323238 4_1:-347057 Msa0527730:CDS
TCTAAAGCGTTCATGTATAA+AGG 0.341061 4_1:+351653 None:intergenic
GGGGAAGGATGGTGGTGGGG+AGG 0.359432 4_1:-351457 Msa0527730:CDS
AAAGAAGAACATAGCATCTT+GGG 0.376196 4_1:+347415 None:intergenic
AATTATAACACATCTAAAAC+TGG 0.382061 4_1:+346985 None:intergenic
TACGTCGTGCTGAGGAGATC+AGG 0.383073 4_1:-351554 Msa0527730:CDS
TAAAGAAGAACATAGCATCT+TGG 0.387294 4_1:+347414 None:intergenic
TAAGGGGAAGGATGGTGGTG+GGG 0.390562 4_1:-351460 Msa0527730:CDS
TCCTCATAATTTAACTGAAA+AGG 0.391490 4_1:-347617 Msa0527730:CDS
TAAATCAACCTCCGCACAAT+CGG 0.391564 4_1:+346892 None:intergenic
GGGAAGGATGGTGGTGGGGA+GGG 0.396231 4_1:-351456 Msa0527730:CDS
TTGTATGGACCTCCTGGAAC+TGG 0.396491 4_1:-349975 Msa0527730:CDS
CCCTGTTGCTTTGGTCCACA+TGG 0.396687 4_1:+347368 None:intergenic
CCCATGTGGACCAAAGCAAC+AGG 0.401299 4_1:-347369 Msa0527730:CDS
TGAATCTCTCATGAACTTCA+AGG 0.403290 4_1:+347070 None:intergenic
TGAACTGCGCCCTGTTGCTT+TGG 0.404749 4_1:+347359 None:intergenic
TCCGGCATTGTCTTCGTGTA+CGG 0.414643 4_1:+351694 None:intergenic
GAGGGTGGTGGAGGTGGTGA+AGG 0.417655 4_1:-351438 Msa0527730:CDS
CTTCTCCACGCTGGCCACAT+AGG 0.417992 4_1:+349060 None:intergenic
AGTAAGGGGAAGGATGGTGG+TGG 0.426631 4_1:-351462 Msa0527730:CDS
ACGAATCAAAACAGAACTTC+TGG 0.429142 4_1:-349015 Msa0527730:CDS
ACAAAGGAGTTTGGAGAAGA+AGG 0.429561 4_1:-347048 Msa0527730:CDS
AACGATGTATAGCAATTTCA+AGG 0.438031 4_1:-351744 None:intergenic
GGGCCAGGGCCAGCTTCTAA+TGG 0.441227 4_1:-351513 Msa0527730:CDS
TTCATCAACAAATATGATAG+AGG 0.451811 4_1:+349091 None:intergenic
GCTCTAAGCTTCGCCTGCTC+CGG 0.455785 4_1:+351408 None:intergenic
CCATCCTTCCCCTTACTCTT+CGG 0.459708 4_1:+351468 None:intergenic
TGCTACGAGGCCGAAGAGTA+AGG 0.461247 4_1:-351478 Msa0527730:CDS
TCGCCATTAGAAGCTGGCCC+TGG 0.467828 4_1:+351510 None:intergenic
TAAATTGAGCAGGTGCATCT+TGG 0.468085 4_1:-347646 Msa0527730:intron
AGATCTTGTTTCAAAGTGGA+TGG 0.468719 4_1:-349168 Msa0527730:CDS
TTAAGAGTCCTGAGGGTATG+TGG 0.469882 4_1:-347394 Msa0527730:CDS
CTTACCTGGTCTAAAGCATA+AGG 0.474963 4_1:+347916 None:intergenic
TGAAAAGGATTATGAATACT+TGG 0.477851 4_1:-347602 Msa0527730:CDS
GTAAGGGGAAGGATGGTGGT+GGG 0.478141 4_1:-351461 Msa0527730:CDS
GTCATGGTGGTTGCTTATGT+TGG 0.479616 4_1:-346793 Msa0527730:three_prime_UTR
ATTATGAATACTTGGCTAGC+AGG 0.480856 4_1:-347594 Msa0527730:CDS
TGCTTGATGATGGTGGGCCA+GGG 0.483435 4_1:-351527 Msa0527730:CDS
TTCTTCTTTAAGAGTCCTGA+GGG 0.484201 4_1:-347401 Msa0527730:CDS
AGAACTTCTGGTGCAGATGC+AGG 0.485421 4_1:-349003 Msa0527730:intron
ATGACGGATCTTGCTACAAA+AGG 0.487123 4_1:-347329 Msa0527730:CDS
TGGTGGAGGTGGTGAAGGAG+AGG 0.488082 4_1:-351433 Msa0527730:CDS
AGGTGGTGAAGGAGAGGATC+CGG 0.491616 4_1:-351427 Msa0527730:CDS
TTCTCCACGCTGGCCACATA+GGG 0.495975 4_1:+349061 None:intergenic
CATCAGATCTTGTTTCAAAG+TGG 0.499401 4_1:-349172 Msa0527730:CDS
CAAAATCTGTTCTTGTAATG+GGG 0.501472 4_1:+347136 None:intergenic
CTATGTGGCCAGCGTGGAGA+AGG 0.514378 4_1:-349059 Msa0527730:CDS
AAAAGGTTCTTGCTAGGCAA+AGG 0.518856 4_1:-347113 Msa0527730:CDS
TACAAAAGGACTTGCTTCAA+AGG 0.521759 4_1:-347315 Msa0527730:intron
AGGGCTGTGCTTGATGATGG+TGG 0.521999 4_1:-351534 Msa0527730:CDS
ATCAGGGCTGTGCTTGATGA+TGG 0.526796 4_1:-351537 Msa0527730:CDS
TCATCAACAAATATGATAGA+GGG 0.526931 4_1:+349092 None:intergenic
AAATCAACCTCCGCACAATC+GGG 0.529888 4_1:+346893 None:intergenic
GCGGCATCGCCATTAGAAGC+TGG 0.534830 4_1:+351504 None:intergenic
TGGAAAATCATATTTAGCTA+AGG 0.535949 4_1:-349955 Msa0527730:CDS
AAAATCTGTTCTTGTAATGG+GGG 0.541123 4_1:+347137 None:intergenic
TGAAGGAGAGGATCCGGAGC+AGG 0.541483 4_1:-351421 Msa0527730:CDS
AGCTTCTAATGGCGATGCCG+CGG 0.546566 4_1:-351502 Msa0527730:CDS
CCGAAGAGTAAGGGGAAGGA+TGG 0.547863 4_1:-351468 Msa0527730:CDS
GCTACGAGGCCGAAGAGTAA+GGG 0.547998 4_1:-351477 Msa0527730:CDS
CGGAGGTTGATTTATTACGA+TGG 0.548713 4_1:-346883 Msa0527730:three_prime_UTR
TACTTGGCTAGCAGGACAGA+GGG 0.548985 4_1:-347586 Msa0527730:CDS
CCTGTTGCTTTGGTCCACAT+GGG 0.563250 4_1:+347369 None:intergenic
GGGCTGTGCTTGATGATGGT+GGG 0.571206 4_1:-351533 Msa0527730:CDS
CGCAGTTCAAACTACAATGA+CGG 0.571283 4_1:-347345 Msa0527730:CDS
GTTCTTCTTTAAGAGTCCTG+AGG 0.572301 4_1:-347402 Msa0527730:CDS
AGCTAAGGCAGTTGCAACTG+AGG 0.574398 4_1:-349940 Msa0527730:CDS
GATCTTGTTTCAAAGTGGAT+GGG 0.577099 4_1:-349167 Msa0527730:CDS
CACACCTTATGCTTTAGACC+AGG 0.580873 4_1:-347920 Msa0527730:intron
GAGCAGGCGAAGCTTAGAGC+GGG 0.584883 4_1:-351405 Msa0527730:intron
ACGTCGTGCTGAGGAGATCA+GGG 0.588419 4_1:-351553 Msa0527730:CDS
CTCAGCACGACGTAAATACT+CGG 0.590884 4_1:+351563 None:intergenic
AAGAGTAAGGGGAAGGATGG+TGG 0.591605 4_1:-351465 Msa0527730:CDS
TCTCATTGCCTTCTCCACGC+TGG 0.597326 4_1:+349051 None:intergenic
GCCGTACACGAAGACAATGC+CGG 0.598847 4_1:-351695 Msa0527730:CDS
CGAGTATTTACGTCGTGCTG+AGG 0.603573 4_1:-351562 Msa0527730:CDS
CATGGGATCCACATACCCTC+AGG 0.604619 4_1:+347386 None:intergenic
CTACGAGGCCGAAGAGTAAG+GGG 0.613832 4_1:-351476 Msa0527730:CDS
ATGTGAAGTTCCCGATTGTG+CGG 0.613924 4_1:-346903 Msa0527730:three_prime_UTR
CCACTCATATTGTAGGGTGT+AGG 0.618221 4_1:-347982 Msa0527730:intron
GCGATGCCGCGGTTGCTACG+AGG 0.619805 4_1:-351491 Msa0527730:CDS
AAATCTGTTCTTGTAATGGG+GGG 0.629544 4_1:+347138 None:intergenic
TAGAAAACTAACTTGTGTCA+TGG 0.636740 4_1:-346809 Msa0527730:three_prime_UTR
CATCAACAAATATGATAGAG+GGG 0.637776 4_1:+349093 None:intergenic
TGAAGTTCCCGATTGTGCGG+AGG 0.638548 4_1:-346900 Msa0527730:three_prime_UTR
GATGAAATAGATTCCCTATG+TGG 0.643720 4_1:-349074 Msa0527730:CDS
GAGGCCGAAGAGTAAGGGGA+AGG 0.649712 4_1:-351472 Msa0527730:CDS
ATCAACAAATATGATAGAGG+GGG 0.666172 4_1:+349094 None:intergenic
GAGGGTATGTGGATCCCATG+TGG 0.666781 4_1:-347383 Msa0527730:CDS
GGAGCAGGCGAAGCTTAGAG+CGG 0.673581 4_1:-351406 Msa0527730:CDS
CCATGTGGACCAAAGCAACA+GGG 0.676849 4_1:-347368 Msa0527730:CDS
ATACTTGGCTAGCAGGACAG+AGG 0.680894 4_1:-347587 Msa0527730:CDS
GATTCCCTATGTGGCCAGCG+TGG 0.682011 4_1:-349065 Msa0527730:CDS
CTTCGGCCTCGTAGCAACCG+CGG 0.685179 4_1:+351485 None:intergenic
AGTTCATGAGAGATTCACAA+AGG 0.699715 4_1:-347064 Msa0527730:CDS
TTTCAGGTAAAAGACGACCA+TGG 0.700290 4_1:-350010 Msa0527730:intron
ACTTGGCTAGCAGGACAGAG+GGG 0.708147 4_1:-347585 Msa0527730:CDS
AAAACTAACTTGTGTCATGG+TGG 0.713532 4_1:-346806 Msa0527730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAACAATAAAATTC+AGG + chr4_1:350704-350723 None:intergenic 10.0%
!!! TCATTTTCTTAAATTATTAC+TGG + chr4_1:347530-347549 None:intergenic 15.0%
!! AATTTAAGAAAATGATTTAC+CGG - chr4_1:347535-347554 Msa0527730:intron 15.0%
!!! TTGTATTTTATTTAGGTTTT+TGG + chr4_1:348785-348804 None:intergenic 15.0%
!! AATAATATAGTAATTTCCAT+AGG + chr4_1:348824-348843 None:intergenic 15.0%
!! ATAGGTAAAAAAATGATATA+GGG + chr4_1:348886-348905 None:intergenic 15.0%
!! TATAGGTAAAAAAATGATAT+AGG + chr4_1:348887-348906 None:intergenic 15.0%
!! TCTTTATCTTATCAATATAT+AGG + chr4_1:348904-348923 None:intergenic 15.0%
!! TGGAAATATTCAATAAATAA+AGG + chr4_1:349551-349570 None:intergenic 15.0%
!!! TTTTTTTTACAGAAATGATT+TGG + chr4_1:349571-349590 None:intergenic 15.0%
!! AAATAAAGAGAAATACAAAA+AGG + chr4_1:350402-350421 None:intergenic 15.0%
!!! GTTGTTTTTATATGATATCA+TGG - chr4_1:347273-347292 Msa0527730:intron 20.0%
!! AATAAGCTGAAAACAATTTA+TGG - chr4_1:347328-347347 Msa0527730:CDS 20.0%
!! ATAAGCTGAAAACAATTTAT+GGG - chr4_1:347329-347348 Msa0527730:CDS 20.0%
!! TTATATCATAAAGAACTAGA+AGG - chr4_1:347891-347910 Msa0527730:intron 20.0%
!! ATACAAAATTGCAAATCTTA+AGG - chr4_1:348063-348082 Msa0527730:intron 20.0%
!! TACAAAATTGCAAATCTTAA+GGG - chr4_1:348064-348083 Msa0527730:intron 20.0%
!! AACTTTAATGATATATTGAC+AGG - chr4_1:348308-348327 Msa0527730:intron 20.0%
!! AAATTGTTCTATTGTTTACA+TGG - chr4_1:348521-348540 Msa0527730:intron 20.0%
!! GTTAAAGAAATTTCTACATT+AGG - chr4_1:348563-348582 Msa0527730:intron 20.0%
!! AATTCTACTTAAATACCAAA+TGG + chr4_1:348735-348754 None:intergenic 20.0%
!!! TAGGACTTTGTATTTTATTT+AGG + chr4_1:348792-348811 None:intergenic 20.0%
!! AAAAAAATGATATAGGGTAA+AGG + chr4_1:348880-348899 None:intergenic 20.0%
!! TGATAAGATAAAGATGAAAA+AGG - chr4_1:348910-348929 Msa0527730:intron 20.0%
!! TTTCTGTATTGTTATGAATT+AGG - chr4_1:349159-349178 Msa0527730:CDS 20.0%
!!! CAAAAGTTAAAAATGCTTTT+AGG + chr4_1:349203-349222 None:intergenic 20.0%
!!! TTTGTTTTTTTTGTGTGATT+TGG + chr4_1:349598-349617 None:intergenic 20.0%
!!! TTTTTAAATGTAGTTTTCCT+TGG - chr4_1:349687-349706 Msa0527730:intron 20.0%
!!! AATGCTTCAATTTTTTATGT+TGG - chr4_1:349799-349818 Msa0527730:intron 20.0%
!!! TTTTTGTAGGCATTTTTTTA+GGG + chr4_1:349991-350010 None:intergenic 20.0%
!!! AAAAATATCGTTTAAAACGA+AGG + chr4_1:350023-350042 None:intergenic 20.0%
!! TTGCTTCTTATTAGTATATT+GGG - chr4_1:350127-350146 Msa0527730:intron 20.0%
!! AGAACATAAACAAAAAATGT+TGG + chr4_1:350379-350398 None:intergenic 20.0%
!! TTATATATAAACCTAGCAAA+TGG - chr4_1:350715-350734 Msa0527730:intron 20.0%
!!! AACGTGTCATTTTATTTTTT+TGG - chr4_1:350742-350761 Msa0527730:intron 20.0%
!!! AAAAACTTTTTAATCTCTTC+AGG - chr4_1:350945-350964 Msa0527730:intron 20.0%
!!! AATTATAACACATCTAAAAC+TGG + chr4_1:351434-351453 None:intergenic 20.0%
!!! CATCCTTTTTATGTTATTTT+CGG - chr4_1:351488-351507 Msa0527730:CDS 20.0%
!!! ATCCTTTTTATGTTATTTTC+GGG - chr4_1:351489-351508 Msa0527730:CDS 20.0%
!! GATTCAAATATACACAATTT+AGG + chr4_1:351578-351597 None:intergenic 20.0%
!! TTTCATCTTGTAAAAAAAGA+TGG - chr4_1:351681-351700 Msa0527730:CDS 20.0%
!!! GGTTTTTTCGTACTTTAAAT+GGG + chr4_1:346800-346819 None:intergenic 25.0%
!! TAATTGCTTCTCTGATTTTA+GGG + chr4_1:346821-346840 None:intergenic 25.0%
!!! AAGTTTCCTCAATTTTTTAC+TGG - chr4_1:347139-347158 Msa0527730:CDS 25.0%
!! TTTGTTGTCTTCTCAATATT+AGG - chr4_1:347822-347841 Msa0527730:intron 25.0%
! AAATCAATATGATCAATCCT+TGG + chr4_1:347966-347985 None:intergenic 25.0%
!!! AGGATTGATCATATTGATTT+TGG - chr4_1:347966-347985 Msa0527730:CDS 25.0%
! TGGAAAATCATATTTAGCTA+AGG - chr4_1:348461-348480 Msa0527730:intron 25.0%
!! ACAATTTTACCTGAAAAATG+TGG + chr4_1:348508-348527 None:intergenic 25.0%
! AATGAAATCATATTCTCAAG+TGG - chr4_1:348616-348635 Msa0527730:intron 25.0%
!!! TTATTTAGGTTTTTGGCATT+TGG + chr4_1:348778-348797 None:intergenic 25.0%
! AAAATGAACATGATGTATCT+TGG - chr4_1:348935-348954 Msa0527730:intron 25.0%
!!! TTTTTTTGACGAATAAAGCA+TGG + chr4_1:349094-349113 None:intergenic 25.0%
! TCATCAACAAATATGATAGA+GGG + chr4_1:349327-349346 None:intergenic 25.0%
! TTCATCAACAAATATGATAG+AGG + chr4_1:349328-349347 None:intergenic 25.0%
! AACATTGTAATCAGTTTAGT+TGG - chr4_1:349466-349485 Msa0527730:intron 25.0%
! CAGTTATATAGTGTAATATG+TGG - chr4_1:349523-349542 Msa0527730:intron 25.0%
! AGCATTAATTACGAATTAAC+AGG + chr4_1:349785-349804 None:intergenic 25.0%
!!! GTTTTTGTAGGCATTTTTTT+AGG + chr4_1:349992-350011 None:intergenic 25.0%
! CAATATACTAATAAGAAGCA+AGG + chr4_1:350128-350147 None:intergenic 25.0%
! CTTGCTTCTTATTAGTATAT+TGG - chr4_1:350126-350145 Msa0527730:intron 25.0%
! AATGATGTAAATATTAGCGA+TGG + chr4_1:350267-350286 None:intergenic 25.0%
! ATCGCTAATATTTACATCAT+TGG - chr4_1:350266-350285 Msa0527730:intron 25.0%
!!! AGAATTATTTTTGTCTTACC+TGG + chr4_1:350517-350536 None:intergenic 25.0%
! TCTAATCAATTTGTATTTGC+AGG - chr4_1:350576-350595 Msa0527730:intron 25.0%
! TCCTCATAATTTAACTGAAA+AGG - chr4_1:350799-350818 Msa0527730:intron 25.0%
!! TCCTTTTCAGTTAAATTATG+AGG + chr4_1:350803-350822 None:intergenic 25.0%
! TGAAAAGGATTATGAATACT+TGG - chr4_1:350814-350833 Msa0527730:intron 25.0%
! AAGAAATTCATCCAAGTAAA+AGG + chr4_1:350923-350942 None:intergenic 25.0%
! ACATATCTTTAATTGACATG+AGG - chr4_1:351216-351235 Msa0527730:intron 25.0%
! TCAAAATCTGTTCTTGTAAT+GGG + chr4_1:351284-351303 None:intergenic 25.0%
! TTCAAAATCTGTTCTTGTAA+TGG + chr4_1:351285-351304 None:intergenic 25.0%
!!! TACAAGAACAGATTTTGAAA+AGG - chr4_1:351286-351305 Msa0527730:intron 25.0%
!!! TCCTTTTTATGTTATTTTCG+GGG - chr4_1:351490-351509 Msa0527730:CDS 25.0%
! AAACGCTTTTGAATAGTTTC+CGG + chr4_1:346743-346762 None:intergenic 30.0%
! TCTAAAGCGTTCATGTATAA+AGG + chr4_1:346766-346785 None:intergenic 30.0%
!!! GGGTTTTTTCGTACTTTAAA+TGG + chr4_1:346801-346820 None:intergenic 30.0%
! GTAATTGCTTCTCTGATTTT+AGG + chr4_1:346822-346841 None:intergenic 30.0%
GTTGAATTCTGCGATTATTA+GGG - chr4_1:347033-347052 Msa0527730:exon 30.0%
AAAAATTGAGGAAACTTGAC+AGG + chr4_1:347136-347155 None:intergenic 30.0%
!!! TTTCCTCAATTTTTTACTGG+TGG - chr4_1:347142-347161 Msa0527730:CDS 30.0%
!!! TTCCTCAATTTTTTACTGGT+GGG - chr4_1:347143-347162 Msa0527730:CDS 30.0%
ATTATTGTCTTTGTCGTGTT+TGG - chr4_1:347175-347194 Msa0527730:intron 30.0%
TAGTTCAATCCATATCGAAA+TGG - chr4_1:347698-347717 Msa0527730:intron 30.0%
TGTCTATATTGTGATTGTGT+TGG - chr4_1:347744-347763 Msa0527730:intron 30.0%
! CAATTAATTGAAGGTGTGTT+TGG + chr4_1:347781-347800 None:intergenic 30.0%
CTGACACTTCAATTAATTGA+AGG + chr4_1:347790-347809 None:intergenic 30.0%
!!! GATTGTGTTTGTGTCTTTTT+TGG - chr4_1:347913-347932 Msa0527730:intron 30.0%
AAGATTGGATATCAATACCA+AGG - chr4_1:347946-347965 Msa0527730:CDS 30.0%
!!! CATATTGATTTTGGTATGCA+AGG - chr4_1:347975-347994 Msa0527730:intron 30.0%
!! AGTTGGCAAGTTTGTTAATT+TGG - chr4_1:348018-348037 Msa0527730:intron 30.0%
! CATGTTTTCAATGTTTTGTG+CGG - chr4_1:348171-348190 Msa0527730:intron 30.0%
!! AAAACTTTGAAACCATGAAG+TGG - chr4_1:348214-348233 Msa0527730:intron 30.0%
AGCGAAAGCAAGATTATATT+GGG - chr4_1:348278-348297 Msa0527730:intron 30.0%
ATCGAATGTGTATAGTTATG+TGG - chr4_1:348346-348365 Msa0527730:intron 30.0%
! AAATATGATTTTCCAGTTCC+AGG + chr4_1:348456-348475 None:intergenic 30.0%
GAGAATATGATTTCATTCCA+AGG + chr4_1:348613-348632 None:intergenic 30.0%
TACTTAAATACCAAATGGCT+AGG + chr4_1:348730-348749 None:intergenic 30.0%
AATTATGATGTATGTTGCTC+TGG - chr4_1:348983-349002 Msa0527730:intron 30.0%
ATTATGATGTATGTTGCTCT+GGG - chr4_1:348984-349003 Msa0527730:intron 30.0%
GAATAAAGCATGGAAAATTG+AGG + chr4_1:349084-349103 None:intergenic 30.0%
TTATGAATTAGGCACATAAG+TGG - chr4_1:349170-349189 Msa0527730:CDS 30.0%
AAGATCTGATGAAGAAATAC+TGG + chr4_1:349235-349254 None:intergenic 30.0%
!!! GGTTTCAAACCTTTTTCAAA+TGG - chr4_1:349287-349306 Msa0527730:intron 30.0%
ATCAACAAATATGATAGAGG+GGG + chr4_1:349325-349344 None:intergenic 30.0%
CATCAACAAATATGATAGAG+GGG + chr4_1:349326-349345 None:intergenic 30.0%
!!! CAGGTAATAGCTTTATGTTT+TGG - chr4_1:349432-349451 Msa0527730:intron 30.0%
ATACAAGCATGCACTTAAAT+GGG + chr4_1:349649-349668 None:intergenic 30.0%
AATACAAGCATGCACTTAAA+TGG + chr4_1:349650-349669 None:intergenic 30.0%
AGACTGACAAATAAAAACCA+AGG + chr4_1:349707-349726 None:intergenic 30.0%
! GCTTTTCAATTTCAAGAACT+TGG - chr4_1:349736-349755 Msa0527730:intron 30.0%
TTTCAATTTCAAGAACTTGG+AGG - chr4_1:349739-349758 Msa0527730:intron 30.0%
TATGTTGGAGTAGAAAATGT+TGG - chr4_1:349814-349833 Msa0527730:intron 30.0%
ATGTTGGAGTAGAAAATGTT+GGG - chr4_1:349815-349834 Msa0527730:intron 30.0%
!!! AAGGCTTAGTTTGTTTTTGT+AGG + chr4_1:350004-350023 None:intergenic 30.0%
! TGAATTTTTCTTGTCTTAGC+AGG - chr4_1:350046-350065 Msa0527730:intron 30.0%
TTCCTTTGTTCAGCATATTA+TGG - chr4_1:350203-350222 Msa0527730:intron 30.0%
! TCCTCTCTTACAATGTATTT+TGG - chr4_1:350300-350319 Msa0527730:intron 30.0%
! CCTCTCTTACAATGTATTTT+GGG - chr4_1:350301-350320 Msa0527730:intron 30.0%
AGTTTATCCACTCATATTGT+AGG - chr4_1:350427-350446 Msa0527730:intron 30.0%
GTTTATCCACTCATATTGTA+GGG - chr4_1:350428-350447 Msa0527730:intron 30.0%
ATTTGTATTTGCAGGCAATA+AGG - chr4_1:350584-350603 Msa0527730:intron 30.0%
! TTTTTAATCTCTTCAGGTGA+AGG - chr4_1:350951-350970 Msa0527730:intron 30.0%
AAAGAAGAACATAGCATCTT+GGG + chr4_1:351004-351023 None:intergenic 30.0%
TAAAGAAGAACATAGCATCT+TGG + chr4_1:351005-351024 None:intergenic 30.0%
! CGAGATACTATAGATTTTGA+TGG - chr4_1:351128-351147 Msa0527730:intron 30.0%
!!! ATCTGCATAAGTTTTAAGGT+AGG + chr4_1:351251-351270 None:intergenic 30.0%
! AAGGATCTGCATAAGTTTTA+AGG + chr4_1:351255-351274 None:intergenic 30.0%
AAAATCTGTTCTTGTAATGG+GGG + chr4_1:351282-351301 None:intergenic 30.0%
CAAAATCTGTTCTTGTAATG+GGG + chr4_1:351283-351302 None:intergenic 30.0%
!! ATTTTGAAAAGGTTCTTGCT+AGG - chr4_1:351297-351316 Msa0527730:intron 30.0%
TCCCCGAAAATAACATAAAA+AGG + chr4_1:351494-351513 None:intergenic 30.0%
! TAGAAAACTAACTTGTGTCA+TGG - chr4_1:351607-351626 Msa0527730:intron 30.0%
GGTTGAATTCTGCGATTATT+AGG - chr4_1:347032-347051 Msa0527730:exon 35.0%
ACATCATTCCACTTCACATT+CGG + chr4_1:347064-347083 None:intergenic 35.0%
AACCCACCAGTAAAAAATTG+AGG + chr4_1:347148-347167 None:intergenic 35.0%
!!! TCAATTTTTTACTGGTGGGT+TGG - chr4_1:347147-347166 Msa0527730:CDS 35.0%
CTTTGTCGTGTTTGGATAAA+CGG - chr4_1:347183-347202 Msa0527730:intron 35.0%
TAAGCAGTTATCGTGCATAT+AGG + chr4_1:347221-347240 None:intergenic 35.0%
AGGTTCGTTATTCCTTAAGT+GGG + chr4_1:347602-347621 None:intergenic 35.0%
TAGGTTCGTTATTCCTTAAG+TGG + chr4_1:347603-347622 None:intergenic 35.0%
TGTGAGGGTTTATATAGGAT+TGG - chr4_1:347636-347655 Msa0527730:CDS 35.0%
GTGAGGGTTTATATAGGATT+GGG - chr4_1:347637-347656 Msa0527730:CDS 35.0%
!!! TGTGTTTGTGTCTTTTTTGG+AGG - chr4_1:347916-347935 Msa0527730:intron 35.0%
!!! TTTGTGTCTTTTTTGGAGGA+GGG - chr4_1:347920-347939 Msa0527730:intron 35.0%
! AGCTTTTCACAGTTGAAAGT+TGG - chr4_1:348001-348020 Msa0527730:intron 35.0%
GAGCGAAAGCAAGATTATAT+TGG - chr4_1:348277-348296 Msa0527730:intron 35.0%
AATGTTTACTATGCTTCCTG+CGG - chr4_1:348379-348398 Msa0527730:intron 35.0%
TACAACAAAAATGCTCTCCA+TGG + chr4_1:348426-348445 None:intergenic 35.0%
!!! TGGAGAGCATTTTTGTTGTA+TGG - chr4_1:348426-348445 Msa0527730:intron 35.0%
CAAGGATAATCCTTGTAATC+AGG + chr4_1:348595-348614 None:intergenic 35.0%
CTGATTACAAGGATTATCCT+TGG - chr4_1:348593-348612 Msa0527730:intron 35.0%
GGCATTAAAATTTGAACTGC+AGG - chr4_1:348682-348701 Msa0527730:intron 35.0%
AAGCATGGAAAATTGAGGTA+TGG + chr4_1:349079-349098 None:intergenic 35.0%
! CATCAGATCTTGTTTCAAAG+TGG - chr4_1:349244-349263 Msa0527730:intron 35.0%
! AGATCTTGTTTCAAAGTGGA+TGG - chr4_1:349248-349267 Msa0527730:intron 35.0%
! GATCTTGTTTCAAAGTGGAT+GGG - chr4_1:349249-349268 Msa0527730:intron 35.0%
TTTCTCGAGCCATTTGAAAA+AGG + chr4_1:349299-349318 None:intergenic 35.0%
GATGAAATAGATTCCCTATG+TGG - chr4_1:349342-349361 Msa0527730:intron 35.0%
ACGAATCAAAACAGAACTTC+TGG - chr4_1:349401-349420 Msa0527730:intron 35.0%
TAAGTGCATGCTTGTATTTG+TGG - chr4_1:349652-349671 Msa0527730:intron 35.0%
TTTGTTTCATATCTCGCACT+TGG + chr4_1:349844-349863 None:intergenic 35.0%
GAAACAAAGAAGTTCCACAT+CGG - chr4_1:349856-349875 Msa0527730:intron 35.0%
!! TAGTTTGTTATTAGCCGATG+TGG + chr4_1:349873-349892 None:intergenic 35.0%
TGAAGAATACACAATGCAAG+TGG - chr4_1:349895-349914 Msa0527730:intron 35.0%
CCTTAAGAAGTTGGGTTAAT+GGG + chr4_1:349931-349950 None:intergenic 35.0%
ACCTTAAGAAGTTGGGTTAA+TGG + chr4_1:349932-349951 None:intergenic 35.0%
! AACCCAACTTCTTAAGGTTT+TGG - chr4_1:349934-349953 Msa0527730:CDS 35.0%
! ACCCAACTTCTTAAGGTTTT+GGG - chr4_1:349935-349954 Msa0527730:CDS 35.0%
TCCCAAAACCTTAAGAAGTT+GGG + chr4_1:349939-349958 None:intergenic 35.0%
TTCCCAAAACCTTAAGAAGT+TGG + chr4_1:349940-349959 None:intergenic 35.0%
!!! TAAGGTTTTGGGAACAAATG+TGG - chr4_1:349946-349965 Msa0527730:CDS 35.0%
GACCATAATATGCTGAACAA+AGG + chr4_1:350208-350227 None:intergenic 35.0%
AGCATATTATGGTCTGTTGT+TGG - chr4_1:350214-350233 Msa0527730:intron 35.0%
CCCAAAATACATTGTAAGAG+AGG + chr4_1:350304-350323 None:intergenic 35.0%
TATTCCACTACCAGATTTGA+AGG - chr4_1:350630-350649 Msa0527730:intron 35.0%
ACACGTTAAAACCATTTGCT+AGG + chr4_1:350729-350748 None:intergenic 35.0%
!! TTTGGCTTGATAAATTGAGC+AGG - chr4_1:350760-350779 Msa0527730:intron 35.0%
ATTATGAATACTTGGCTAGC+AGG - chr4_1:350822-350841 Msa0527730:intron 35.0%
AAGTAAAAGGCGATTGAAAC+AGG + chr4_1:350910-350929 None:intergenic 35.0%
! TGTTTCAATCGCCTTTTACT+TGG - chr4_1:350909-350928 Msa0527730:intron 35.0%
! TTCTTCTTTAAGAGTCCTGA+GGG - chr4_1:351015-351034 Msa0527730:intron 35.0%
! TACAAAAGGACTTGCTTCAA+AGG - chr4_1:351101-351120 Msa0527730:intron 35.0%
!! CTATAGATTTTGATGGCTGT+TGG - chr4_1:351135-351154 Msa0527730:intron 35.0%
! AAATCTGTTCTTGTAATGGG+GGG + chr4_1:351281-351300 None:intergenic 35.0%
TGAATCTCTCATGAACTTCA+AGG + chr4_1:351349-351368 None:intergenic 35.0%
AGTTCATGAGAGATTCACAA+AGG - chr4_1:351352-351371 Msa0527730:intron 35.0%
! AAAACTAACTTGTGTCATGG+TGG - chr4_1:351610-351629 Msa0527730:intron 35.0%
TGAAGTGGAATGATGTTGCT+GGG - chr4_1:347068-347087 Msa0527730:CDS 40.0%
GCTCTTACAAATAGTCTCGT+AGG - chr4_1:347374-347393 Msa0527730:CDS 40.0%
CTATATCGACCCTTGTTCTA+TGG - chr4_1:347432-347451 Msa0527730:CDS 40.0%
GTTTGTGCTCCATAGAACAA+GGG + chr4_1:347444-347463 None:intergenic 40.0%
TGTTTGTGCTCCATAGAACA+AGG + chr4_1:347445-347464 None:intergenic 40.0%
! TTTACCGGTGTTAATGTGCA+AGG - chr4_1:347550-347569 Msa0527730:intron 40.0%
CTTAAGTGGGACTCTAAGTT+GGG + chr4_1:347589-347608 None:intergenic 40.0%
TAATCATGAACCTCGTGTGA+GGG - chr4_1:347621-347640 Msa0527730:CDS 40.0%
TCAAAAACCATGGCTGAAAG+GGG + chr4_1:347670-347689 None:intergenic 40.0%
CTCAAAAACCATGGCTGAAA+GGG + chr4_1:347671-347690 None:intergenic 40.0%
! CTTTCAGCCATGGTTTTTGA+GGG - chr4_1:347670-347689 Msa0527730:intron 40.0%
!! TTTCAGCCATGGTTTTTGAG+GGG - chr4_1:347671-347690 Msa0527730:intron 40.0%
CAGTCACTTCCATTTCGATA+TGG + chr4_1:347710-347729 None:intergenic 40.0%
!!! GTTTGTGTCTTTTTTGGAGG+AGG - chr4_1:347919-347938 Msa0527730:intron 40.0%
!!! TTGTGTCTTTTTTGGAGGAG+GGG - chr4_1:347921-347940 Msa0527730:CDS 40.0%
! TTTCAGGTAAAAGACGACCA+TGG - chr4_1:348406-348425 Msa0527730:intron 40.0%
!! TTTTTGTTGTATGGACCTCC+TGG - chr4_1:348435-348454 Msa0527730:intron 40.0%
! TATGATTTTCCAGTTCCAGG+AGG + chr4_1:348453-348472 None:intergenic 40.0%
!! AGGCTGATTCCACATTTTTC+AGG - chr4_1:348496-348515 Msa0527730:intron 40.0%
TAGGAACTTGCCTGATTACA+AGG - chr4_1:348582-348601 Msa0527730:intron 40.0%
TGCATTGCTTGCTCTCTTAA+AGG - chr4_1:348661-348680 Msa0527730:intron 40.0%
CTGCAGGTAAGCAATTTCTT+AGG - chr4_1:348698-348717 Msa0527730:intron 40.0%
!! TTTCCATAGGACTTGCTGTT+AGG + chr4_1:348811-348830 None:intergenic 40.0%
GATGGGTGAAAGTGAAAAAC+TGG - chr4_1:349266-349285 Msa0527730:intron 40.0%
! TTTCAAGAACTTGGAGGTGT+CGG - chr4_1:349745-349764 Msa0527730:intron 40.0%
AGAAGTTGGGTTAATGGGAT+GGG + chr4_1:349926-349945 None:intergenic 40.0%
AAGAAGTTGGGTTAATGGGA+TGG + chr4_1:349927-349946 None:intergenic 40.0%
CCCATTAACCCAACTTCTTA+AGG - chr4_1:349928-349947 Msa0527730:CDS 40.0%
! TTTTCTTGTCTTAGCAGGAG+AGG - chr4_1:350051-350070 Msa0527730:intron 40.0%
ATTGCCCAATTCCACTACTA+TGG + chr4_1:350082-350101 None:intergenic 40.0%
! AGGAAAGCATGGAACTATGA+TGG + chr4_1:350188-350207 None:intergenic 40.0%
ATGCTGAACAAAGGAAAGCA+TGG + chr4_1:350199-350218 None:intergenic 40.0%
AATATTAGCGATGGCGACTA+CGG + chr4_1:350258-350277 None:intergenic 40.0%
TTTGTTCCTAGCATTGCTGT+AGG - chr4_1:350351-350370 Msa0527730:intron 40.0%
CTGCAAGAACAAGAACTTTC+TGG + chr4_1:350469-350488 None:intergenic 40.0%
! CTTACCTGGTCTAAAGCATA+AGG + chr4_1:350503-350522 None:intergenic 40.0%
TTGCCTTAAACATGTGTTGG+CGG + chr4_1:350657-350676 None:intergenic 40.0%
! CCAACACATGTTTAAGGCAA+GGG - chr4_1:350657-350676 Msa0527730:intron 40.0%
TAAATTGAGCAGGTGCATCT+TGG - chr4_1:350770-350789 Msa0527730:intron 40.0%
! ACATAGCATCTTGGGTTTTG+CGG + chr4_1:350996-351015 None:intergenic 40.0%
! GTTCTTCTTTAAGAGTCCTG+AGG - chr4_1:351014-351033 Msa0527730:intron 40.0%
CGCAGTTCAAACTACAATGA+CGG - chr4_1:351071-351090 Msa0527730:intron 40.0%
!! ATGACGGATCTTGCTACAAA+AGG - chr4_1:351087-351106 Msa0527730:intron 40.0%
!! GGTTGTGATATTTTTCGACG+AGG - chr4_1:351186-351205 Msa0527730:intron 40.0%
AAAAGGTTCTTGCTAGGCAA+AGG - chr4_1:351303-351322 Msa0527730:intron 40.0%
!!! AGGTCACTTTTGCTTACTGT+AGG + chr4_1:351329-351348 None:intergenic 40.0%
GAGAGATTCACAAAGGAGTT+TGG - chr4_1:351359-351378 Msa0527730:intron 40.0%
ACAAAGGAGTTTGGAGAAGA+AGG - chr4_1:351368-351387 Msa0527730:intron 40.0%
TAAATCAACCTCCGCACAAT+CGG + chr4_1:351527-351546 None:intergenic 40.0%
! CGGAGGTTGATTTATTACGA+TGG - chr4_1:351533-351552 Msa0527730:CDS 40.0%
CTCAGCACGACGTAAATACT+CGG + chr4_1:346856-346875 None:intergenic 45.0%
GTGAAGTGGAATGATGTTGC+TGG - chr4_1:347067-347086 Msa0527730:CDS 45.0%
CCTTAAGTGGGACTCTAAGT+TGG + chr4_1:347590-347609 None:intergenic 45.0%
CCAACTTAGAGTCCCACTTA+AGG - chr4_1:347587-347606 Msa0527730:CDS 45.0%
CTCACACGAGGTTCATGATT+AGG + chr4_1:347622-347641 None:intergenic 45.0%
CTAATCATGAACCTCGTGTG+AGG - chr4_1:347620-347639 Msa0527730:CDS 45.0%
CCTATATAAACCCTCACACG+AGG + chr4_1:347634-347653 None:intergenic 45.0%
CCTCGTGTGAGGGTTTATAT+AGG - chr4_1:347631-347650 Msa0527730:CDS 45.0%
CCTCAAAAACCATGGCTGAA+AGG + chr4_1:347672-347691 None:intergenic 45.0%
! CCTTTCAGCCATGGTTTTTG+AGG - chr4_1:347669-347688 Msa0527730:intron 45.0%
!! TTCAGCCATGGTTTTTGAGG+GGG - chr4_1:347672-347691 Msa0527730:intron 45.0%
TAACTCCCCCTCAAAAACCA+TGG + chr4_1:347680-347699 None:intergenic 45.0%
TTTGGAGGAGGGGATAAGAT+TGG - chr4_1:347931-347950 Msa0527730:CDS 45.0%
TTTGTGCGGAGAACTCTACA+AGG - chr4_1:348185-348204 Msa0527730:intron 45.0%
! GGTCGTCTTTTACCTGAAAG+AGG + chr4_1:348405-348424 None:intergenic 45.0%
TAGGACTTTGCCTAGCCATT+TGG - chr4_1:348717-348736 Msa0527730:intron 45.0%
!! TTTGGCATTTGGTGCAGTTG+CGG + chr4_1:348767-348786 None:intergenic 45.0%
AGTCCTAACAGCAAGTCCTA+TGG - chr4_1:348805-348824 Msa0527730:intron 45.0%
! GAGATTGAGCTGTTTCATGC+TGG - chr4_1:350102-350121 Msa0527730:intron 45.0%
TTGGAACCTACAGCAATGCT+AGG + chr4_1:350360-350379 None:intergenic 45.0%
CCTACACCCTACAATATGAG+TGG + chr4_1:350437-350456 None:intergenic 45.0%
CCACTCATATTGTAGGGTGT+AGG - chr4_1:350434-350453 Msa0527730:intron 45.0%
! CACACCTTATGCTTTAGACC+AGG - chr4_1:350496-350515 Msa0527730:intron 45.0%
!! TAGCTTCCTGCTGACTCTAT+GGG + chr4_1:350551-350570 None:intergenic 45.0%
!! ATAGCTTCCTGCTGACTCTA+TGG + chr4_1:350552-350571 None:intergenic 45.0%
! TGCCTTAAACATGTGTTGGC+GGG + chr4_1:350656-350675 None:intergenic 45.0%
! GCCAACACATGTTTAAGGCA+AGG - chr4_1:350656-350675 Msa0527730:intron 45.0%
CCCTTGCCTTAAACATGTGT+TGG + chr4_1:350660-350679 None:intergenic 45.0%
! TTAAGAGTCCTGAGGGTATG+TGG - chr4_1:351022-351041 Msa0527730:intron 45.0%
ATGTGAAGTTCCCGATTGTG+CGG - chr4_1:351513-351532 Msa0527730:CDS 45.0%
AAATCAACCTCCGCACAATC+GGG + chr4_1:351526-351545 None:intergenic 45.0%
GTCATGGTGGTTGCTTATGT+TGG - chr4_1:351623-351642 Msa0527730:intron 45.0%
TCCGGCATTGTCTTCGTGTA+CGG + chr4_1:346725-346744 None:intergenic 50.0%
CGAGTATTTACGTCGTGCTG+AGG - chr4_1:346854-346873 Msa0527730:three_prime_UTR 50.0%
ATCAGGGCTGTGCTTGATGA+TGG - chr4_1:346879-346898 Msa0527730:three_prime_UTR 50.0%
CCATCCTTCCCCTTACTCTT+CGG + chr4_1:346951-346970 None:intergenic 50.0%
AAGAGTAAGGGGAAGGATGG+TGG - chr4_1:346951-346970 Msa0527730:three_prime_UTR 50.0%
GGGAAAAGCCGAATGTGAAG+TGG - chr4_1:347053-347072 Msa0527730:CDS 50.0%
GTGGAATGATGTTGCTGGGT+TGG - chr4_1:347072-347091 Msa0527730:CDS 50.0%
!! TGGGTTGGAGAGTGCTAAAC+AGG - chr4_1:347087-347106 Msa0527730:CDS 50.0%
GAGTGCTAAACAGGCTTTGC+AGG - chr4_1:347096-347115 Msa0527730:CDS 50.0%
! ACCGGTGTTAATGTGCAAGG+AGG - chr4_1:347553-347572 Msa0527730:intron 50.0%
CCCTCCTTGCACATTAACAC+CGG + chr4_1:347557-347576 None:intergenic 50.0%
! CCGGTGTTAATGTGCAAGGA+GGG - chr4_1:347554-347573 Msa0527730:intron 50.0%
AAAACCATGGCTGAAAGGGG+AGG + chr4_1:347667-347686 None:intergenic 50.0%
ACCATGAAGTGGCTGTTCTC+TGG - chr4_1:348225-348244 Msa0527730:intron 50.0%
TCCAGAGAACAGCCACTTCA+TGG + chr4_1:348229-348248 None:intergenic 50.0%
! TTTTACCTGAAAGAGGCCGC+AGG + chr4_1:348398-348417 None:intergenic 50.0%
TTGTATGGACCTCCTGGAAC+TGG - chr4_1:348441-348460 Msa0527730:intron 50.0%
AGCTAAGGCAGTTGCAACTG+AGG - chr4_1:348476-348495 Msa0527730:intron 50.0%
AGAACTTCTGGTGCAGATGC+AGG - chr4_1:349413-349432 Msa0527730:intron 50.0%
CCAATTCCACTACTATGGCC+CGG + chr4_1:350077-350096 None:intergenic 50.0%
! CGGGCCATAGTAGTGGAATT+GGG - chr4_1:350075-350094 Msa0527730:intron 50.0%
TATCACCCCATAGAGTCAGC+AGG - chr4_1:350542-350561 Msa0527730:intron 50.0%
!! AGCTTCCTGCTGACTCTATG+GGG + chr4_1:350550-350569 None:intergenic 50.0%
ATACTTGGCTAGCAGGACAG+AGG - chr4_1:350829-350848 Msa0527730:intron 50.0%
TACTTGGCTAGCAGGACAGA+GGG - chr4_1:350830-350849 Msa0527730:intron 50.0%
!! CCTGTTGCTTTGGTCCACAT+GGG + chr4_1:351050-351069 None:intergenic 50.0%
CCATGTGGACCAAAGCAACA+GGG - chr4_1:351048-351067 Msa0527730:intron 50.0%
! TTCTTGTAATGGGGGGTGGA+AGG + chr4_1:351274-351293 None:intergenic 50.0%
! TCTGTTCTTGTAATGGGGGG+TGG + chr4_1:351278-351297 None:intergenic 50.0%
GCCGTACACGAAGACAATGC+CGG - chr4_1:346721-346740 Msa0527730:three_prime_UTR 55.0%
TACGTCGTGCTGAGGAGATC+AGG - chr4_1:346862-346881 Msa0527730:three_prime_UTR 55.0%
ACGTCGTGCTGAGGAGATCA+GGG - chr4_1:346863-346882 Msa0527730:three_prime_UTR 55.0%
!! AGGGCTGTGCTTGATGATGG+TGG - chr4_1:346882-346901 Msa0527730:three_prime_UTR 55.0%
!! GGGCTGTGCTTGATGATGGT+GGG - chr4_1:346883-346902 Msa0527730:three_prime_UTR 55.0%
!! TGCTTGATGATGGTGGGCCA+GGG - chr4_1:346889-346908 Msa0527730:three_prime_UTR 55.0%
AGCTTCTAATGGCGATGCCG+CGG - chr4_1:346914-346933 Msa0527730:three_prime_UTR 55.0%
TGCTACGAGGCCGAAGAGTA+AGG - chr4_1:346938-346957 Msa0527730:three_prime_UTR 55.0%
GCTACGAGGCCGAAGAGTAA+GGG - chr4_1:346939-346958 Msa0527730:three_prime_UTR 55.0%
CTACGAGGCCGAAGAGTAAG+GGG - chr4_1:346940-346959 Msa0527730:three_prime_UTR 55.0%
CCGAAGAGTAAGGGGAAGGA+TGG - chr4_1:346948-346967 Msa0527730:three_prime_UTR 55.0%
! AGTAAGGGGAAGGATGGTGG+TGG - chr4_1:346954-346973 Msa0527730:three_prime_UTR 55.0%
! GTAAGGGGAAGGATGGTGGT+GGG - chr4_1:346955-346974 Msa0527730:three_prime_UTR 55.0%
! TAAGGGGAAGGATGGTGGTG+GGG - chr4_1:346956-346975 Msa0527730:three_prime_UTR 55.0%
AGGTGGTGAAGGAGAGGATC+CGG - chr4_1:346989-347008 Msa0527730:three_prime_UTR 55.0%
CAATCCTCCCCTTTCAGCCA+TGG - chr4_1:347660-347679 Msa0527730:intron 55.0%
TTCTCCACGCTGGCCACATA+GGG + chr4_1:349358-349377 None:intergenic 55.0%
TCTCATTGCCTTCTCCACGC+TGG + chr4_1:349368-349387 None:intergenic 55.0%
CTTGTCTTAGCAGGAGAGGC+CGG - chr4_1:350055-350074 Msa0527730:intron 55.0%
TTGTCTTAGCAGGAGAGGCC+GGG - chr4_1:350056-350075 Msa0527730:intron 55.0%
! CCGGGCCATAGTAGTGGAAT+TGG - chr4_1:350074-350093 Msa0527730:intron 55.0%
CGGGCCTTCAAATCTGGTAG+TGG + chr4_1:350637-350656 None:intergenic 55.0%
! TGTTGGCGGGCCTTCAAATC+TGG + chr4_1:350643-350662 None:intergenic 55.0%
GGCCCGCCAACACATGTTTA+AGG - chr4_1:350651-350670 Msa0527730:intron 55.0%
ACTTGGCTAGCAGGACAGAG+GGG - chr4_1:350831-350850 Msa0527730:intron 55.0%
! AGCAGGACAGAGGGGTTTTC+TGG - chr4_1:350839-350858 Msa0527730:intron 55.0%
! GCATCTTGGGTTTTGCGGAC+AGG + chr4_1:350991-351010 None:intergenic 55.0%
CATGGGATCCACATACCCTC+AGG + chr4_1:351033-351052 None:intergenic 55.0%
! GAGGGTATGTGGATCCCATG+TGG - chr4_1:351033-351052 Msa0527730:intron 55.0%
CCCATGTGGACCAAAGCAAC+AGG - chr4_1:351047-351066 Msa0527730:intron 55.0%
!! CCCTGTTGCTTTGGTCCACA+TGG + chr4_1:351051-351070 None:intergenic 55.0%
! TGAACTGCGCCCTGTTGCTT+TGG + chr4_1:351060-351079 None:intergenic 55.0%
TGAAGTTCCCGATTGTGCGG+AGG - chr4_1:351516-351535 Msa0527730:CDS 55.0%
!! GTGCTTGATGATGGTGGGCC+AGG - chr4_1:346888-346907 Msa0527730:three_prime_UTR 60.0%
TCGCCATTAGAAGCTGGCCC+TGG + chr4_1:346909-346928 None:intergenic 60.0%
GCGGCATCGCCATTAGAAGC+TGG + chr4_1:346915-346934 None:intergenic 60.0%
GAGGCCGAAGAGTAAGGGGA+AGG - chr4_1:346944-346963 Msa0527730:three_prime_UTR 60.0%
TGGTGGAGGTGGTGAAGGAG+AGG - chr4_1:346983-347002 Msa0527730:three_prime_UTR 60.0%
TGAAGGAGAGGATCCGGAGC+AGG - chr4_1:346995-347014 Msa0527730:three_prime_UTR 60.0%
! GCTCTAAGCTTCGCCTGCTC+CGG + chr4_1:347011-347030 None:intergenic 60.0%
GGAGCAGGCGAAGCTTAGAG+CGG - chr4_1:347010-347029 Msa0527730:three_prime_UTR 60.0%
GAGCAGGCGAAGCTTAGAGC+GGG - chr4_1:347011-347030 Msa0527730:three_prime_UTR 60.0%
TGCTTCCTGCGGCCTCTTTC+AGG - chr4_1:348390-348409 Msa0527730:intron 60.0%
GATTCCCTATGTGGCCAGCG+TGG - chr4_1:349351-349370 Msa0527730:intron 60.0%
CTTCTCCACGCTGGCCACAT+AGG + chr4_1:349359-349378 None:intergenic 60.0%
CTATGTGGCCAGCGTGGAGA+AGG - chr4_1:349357-349376 Msa0527730:intron 60.0%
GGGCCAGGGCCAGCTTCTAA+TGG - chr4_1:346903-346922 Msa0527730:three_prime_UTR 65.0%
CTTCGGCCTCGTAGCAACCG+CGG + chr4_1:346934-346953 None:intergenic 65.0%
!! GGGAAGGATGGTGGTGGGGA+GGG - chr4_1:346960-346979 Msa0527730:three_prime_UTR 65.0%
!! AAGGATGGTGGTGGGGAGGG+TGG - chr4_1:346963-346982 Msa0527730:three_prime_UTR 65.0%
!! GAGGGTGGTGGAGGTGGTGA+AGG - chr4_1:346978-346997 Msa0527730:three_prime_UTR 65.0%
GAGAGGCCGGGCCATAGTAG+TGG - chr4_1:350068-350087 Msa0527730:intron 65.0%
GCGATGCCGCGGTTGCTACG+AGG - chr4_1:346925-346944 Msa0527730:three_prime_UTR 70.0%
!! GGGGAAGGATGGTGGTGGGG+AGG - chr4_1:346959-346978 Msa0527730:three_prime_UTR 70.0%
!! GATGGTGGTGGGGAGGGTGG+TGG - chr4_1:346966-346985 Msa0527730:three_prime_UTR 70.0%
!! GGTGGTGGGGAGGGTGGTGG+AGG - chr4_1:346969-346988 Msa0527730:three_prime_UTR 75.0%
!! GGTGGGGAGGGTGGTGGAGG+TGG - chr4_1:346972-346991 Msa0527730:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 346676 351762 346676 ID=Msa0527730;Name=Msa0527730
chr4_1 mRNA 346676 351762 346676 ID=Msa0527730-mRNA-1;Parent=Msa0527730;Name=Msa0527730-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.57|0.75|1|0.85|0.87|8|368|362
chr4_1 exon 346676 347169 346676 ID=Msa0527730-mRNA-1:exon:44;Parent=Msa0527730-mRNA-1
chr4_1 exon 347316 347471 347316 ID=Msa0527730-mRNA-1:exon:43;Parent=Msa0527730-mRNA-1
chr4_1 exon 347558 347656 347558 ID=Msa0527730-mRNA-1:exon:42;Parent=Msa0527730-mRNA-1
chr4_1 exon 347921 347989 347921 ID=Msa0527730-mRNA-1:exon:41;Parent=Msa0527730-mRNA-1
chr4_1 exon 349004 349202 349004 ID=Msa0527730-mRNA-1:exon:40;Parent=Msa0527730-mRNA-1
chr4_1 exon 349921 350026 349921 ID=Msa0527730-mRNA-1:exon:39;Parent=Msa0527730-mRNA-1
chr4_1 exon 351406 351608 351406 ID=Msa0527730-mRNA-1:exon:38;Parent=Msa0527730-mRNA-1
chr4_1 exon 351632 351762 351632 ID=Msa0527730-mRNA-1:exon:37;Parent=Msa0527730-mRNA-1
chr4_1 CDS 351632 351762 351632 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 351406 351608 351406 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 349921 350026 349921 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 349004 349202 349004 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 347921 347989 347921 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 347558 347656 347558 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 347316 347471 347316 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 CDS 347044 347169 347044 ID=Msa0527730-mRNA-1:cds;Parent=Msa0527730-mRNA-1
chr4_1 three_prime_UTR 346676 347043 346676 ID=Msa0527730-mRNA-1:three_prime_utr;Parent=Msa0527730-mRNA-1
Gene Sequence

>Msa0527730

ATGTATAGCAATTTCAAGGAACAAGCAATAGAGTACGTGAAACAAGCCGTACACGAAGACAATGCCGGAAACTATTCAAAAGCGTTTCCTTTATACATGAACGCTTTAGAGTATTTCAAAACCCATTTAAAAGAAGCAATTACGCAGAAATTCACCGAGTATTTACGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGATGGTGGGCCAGGGCCAGCTTCTAATGGCGATGCCGCGGTTGCTACGAGGCCGAAGAGTAAGGGGAAGGATGGTGGTGGGGAGGGTGGTGGAGGTGGTGAAGGAGAGGATCCGGAGCAGGCGAAGCTTAGAGCGGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAACACACCTTATGCTTTAGACCAGGTGCATCTTGGAGATACTCCTCATAATTTAACTGAAAAGGATTATGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGCGTGAAGGATGTTCTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGACGGATCTTGCTACAAAAGGACTTGCTTCAAAGATCCTTCCACCCCCCATTACAAGAACAGATTTTGAAAAGGTTCTTGCTAGGCAAAGGCCTACAGTAAGCAAAAGTGACCTTGAAGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGGTTAA
Protein sequence

>Msa0527730

MYSNFKEQAIEYVKQAVHEDNAGNYSKAFPLYMNALEYFKTHLKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGEGGGGGEGEDPEQAKLRAGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQVHLGDTPHNLTEKDYEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMTDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEG*